Psyllid ID: psy17243

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDEFGE
Secondary Structure (PSIPRED)
cccccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEccccccEEEEcccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEEccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEcccccccccccccccEEEEEEccEEEEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEccccccEEEEEEEEEcccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEccccEEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEEEcccccEEEEccccccc
Coil and Loop (DISEMBL)
MGGMDCLVNVWQMNSHELQSTMEGHLNTVScvaispnsifavsgsedntaKVWGLTLGSVVSTFKSHQSTILAVAVLSdsrrvvtsdkAGVIAVWVADNAQLLYSalgpskcltvthnMKYIvsgdgdnslriwptspqthkdderftvshseeitcftvtwdsqylitgsrdmSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLvvsgskdsnlIVWDMetggeehflagHLGCVTCVKlagdgtvamsdlppsrpagpkrplrrLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMeeiskipikdnvgsqglgpeQAALAQSQHFDQLEAlwnkkspprsrrfehsmskqnsyssrqhsvdtdelsspvdefge
Flexible Loop (DISEMBL)
MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVavlsdsrrvvTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVtnkslvvsgskdsnLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVamsdlppsrpagpkrplrrllkkevsldtytwqrkyghltsSIMMAAVDERLKRRFSVSasmeeiskipikdnvGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFehsmskqnsyssrqhsvdtdelsspvdefge
Low Complexity Region (SEG)
MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDEFGE
Disordered region (IsUnstruct)
****DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWP***********FTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTV*******************LLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERL*****************************************************************************************
Disordered Region (DISOPRED)
MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDE***
Disordered Region (DISEMBL)
MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKK***************************************
Disordered Region (DISPRO)
***MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSP******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDEFGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	392	2.2.26 [Sep-21-2011]
Q00808	1356	Vegetative incompatibilit	no	N/A	0.622	0.179	0.302	6e-24
P49695	742	Probable serine/threonine	yes	N/A	0.625	0.330	0.272	1e-20
Q8YTC2	1258	Uncharacterized WD repeat	no	N/A	0.612	0.190	0.263	1e-19
Q8YRI1	1526	Uncharacterized WD repeat	no	N/A	0.632	0.162	0.245	2e-19
Q61FW2	589	F-box/WD repeat-containin	N/A	N/A	0.568	0.378	0.275	3e-19
Q9V3J8	361	Protein will die slowly O	no	N/A	0.561	0.609	0.280	3e-19
Q8YV57	1683	Uncharacterized WD repeat	no	N/A	0.622	0.144	0.262	4e-19
Q3ULA2	605	F-box/WD repeat-containin	yes	N/A	0.607	0.393	0.270	8e-19
Q91854	518	Beta-TrCP OS=Xenopus laev	N/A	N/A	0.607	0.459	0.270	1e-18
Q9Y297	605	F-box/WD repeat-containin	no	N/A	0.607	0.393	0.270	1e-18

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 115/251 (45%), Gaps = 7/251 (2%)

Query: 2    GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
            G  D  + +W   S     T+EGH   V  VA SP+     SGS+D+T K+W    G+  
Sbjct: 901  GSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCT 960

Query: 62   STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA---QLLYSALGPSKCLTVTHN 118
             T + H S++L+VA   D +RV +      I +W   +    Q L    G    +  + +
Sbjct: 961  QTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPD 1020

Query: 119  MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV 178
             + + SG  D +++IW T+  T     +    H   +     + D Q + +GS D ++K+
Sbjct: 1021 GQRVASGSDDKTIKIWDTASGTCT---QTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKI 1077

Query: 179  WQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG 238
            W  V G   Q L GH D V  VA +   +  V SGS D  + +WD  +G     L GH G
Sbjct: 1078 WDAVSGTCTQTLEGHGDSVWSVAFSPDGQR-VASGSIDGTIKIWDAASGTCTQTLEGHGG 1136

Query: 239  CVTCVKLAGDG 249
             V  V  + DG
Sbjct: 1137 WVHSVAFSPDG 1147

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.
Podospora anserina (taxid: 5145)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 8/253 (3%)

Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D L++VW + S +   T+EGH + V  VA SP+     SGS+D T ++W +      + F
Sbjct: 480 DKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVF 539

Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVW-VADNAQ--LLYSALGPSKCLTVTHNMKY 121
           + H   +L +A   D   V +  + G   +W VA   +  +L         +  + +   
Sbjct: 540 EGHTHYVLDIAFSPDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSM 599

Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
           + SG  D ++R+W  +    +D      + +E +     + D   L+ GS D ++ +W V
Sbjct: 600 VASGSRDGTIRLWDVATGKERD---VLQAPAENVVSLAFSPDGSMLVHGS-DSTVHLWDV 655

Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
             G+      GHTD V  VA +  + +L+ SGS D  + +WD+    E   L GH   V 
Sbjct: 656 ASGEALHTFEGHTDWVRAVAFS-PDGALLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVH 714

Query: 242 CVKLAGDGTVAMS 254
            V    +GT   S
Sbjct: 715 SVAFHPEGTTLAS 727

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 7/247 (2%)

Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W +       T+ GH + V CVA SP+     S + D+T K+W ++ G  + T 
Sbjct: 747 DKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTL 806

Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK---CLTVTHNMKY 121
           KSH   + +VA  +D + + +      I +W     + L + +G +     +  + + K 
Sbjct: 807 KSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKI 866

Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
           +VSG GD ++++W    QTH   +     H+ E+     + D Q L   S D S+++W  
Sbjct: 867 LVSGSGDRTIKLWDC--QTHICIKTLH-GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNC 923

Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
             G+  +   G+TD    VA +  ++ ++ SGS D  + +WD +TG     L GH   + 
Sbjct: 924 RTGQCLKAWYGNTDWALPVAFS-PDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIY 982

Query: 242 CVKLAGD 248
            +  + D
Sbjct: 983 GIAFSPD 989

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 125/257 (48%), Gaps = 9/257 (3%)

Query: 2    GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
            G  D  V +W++NS +   T +GH + V+ V  +P+     SGS D T ++W ++    +
Sbjct: 1218 GSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCL 1277

Query: 62   STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHN 118
             TF+ H + + +VA   D   + +      + +W   +++ L++  G +     +T + +
Sbjct: 1278 HTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPD 1337

Query: 119  MKYIVSGDGDNSLRIWPTSPQTHKDDERFT-VSHSEEITCFTVTWDSQYLITGSRDMSLK 177
               + SG  D ++R+W  S      +  +T + H+  +     + D   L +GS D +++
Sbjct: 1338 GTMLASGSDDQTVRLWSIS----SGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVR 1393

Query: 178  VWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL 237
            +W +  GK    L GH + V  +  +  + +L+ SGS D  + +W++ +G   + L GH+
Sbjct: 1394 LWSISSGKCLYTLQGHNNWVGSIVFS-PDGTLLASGSDDQTVRLWNISSGECLYTLHGHI 1452

Query: 238  GCVTCVKLAGDGTVAMS 254
              V  V  + DG +  S
Sbjct: 1453 NSVRSVAFSSDGLILAS 1469

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q61FW2|SEL10_CAEBR F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 17/240 (7%)

Query: 20  STMEGHL-NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS 78
           + + GH  + ++C+ I  +    V+GS+DNT KVW +  G V  T   H   +    +  
Sbjct: 251 AILRGHEEHVITCMQIHND--LLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQ 308

Query: 79  DSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHNMKYIVSGDGDNSLRIWP 135
             R +V+      + VW A++  LL++  G +   +C+ + +    +V+G  D +LR+W 
Sbjct: 309 CGRYIVSGSTDRTVKVWRAEDGFLLHTLQGHTSTVRCMAMANTT--LVTGSRDCTLRVWD 366

Query: 136 TSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTD 195
                H    R    H   + C  V +D   +++G  D ++K+W    GK  + L+GH++
Sbjct: 367 IETGLHV---RTLQGHQAAVRC--VQFDGNIVVSGGYDFTVKIWDAFSGKCLRTLIGHSN 421

Query: 196 HVSCVAVAVTNKSLVVSGSKDSNLIVWDM-ETGGEE--HFLAGHLGCVTCVKLAGDGTVA 252
            V  +    + +S+V SGS D+++ VWD     G+E   FL+GH    + ++L G+  V+
Sbjct: 422 RVYSLLYE-SERSIVCSGSLDTSIRVWDFSRPEGQELIAFLSGHTSLTSGMQLRGNILVS 480

Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 15/235 (6%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
           G  D  + VW++++ +   T++GH N V C   +P S   VSGS D + ++W +  G  +
Sbjct: 132 GSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL 191

Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTH 117
            T  +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + 
Sbjct: 192 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 251

Query: 118 NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRD 173
           N KYI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D
Sbjct: 252 NGKYILAATLDNTLKLWDYS--KGKCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSED 307

Query: 174 MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS--KDSNLIVWDMET 226
             + +W +   ++ Q L GHTD V C A   T ++++ S +   D  + +W  +T
Sbjct: 308 NMVYIWNLQSKEVVQKLQGHTDTVLCTACHPT-ENIIASAALENDKTIKLWKSDT 361

Essential for viability.

Drosophila melanogaster (taxid: 7227)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 96.3 bits (238), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 123/259 (47%), Gaps = 15/259 (5%)

Query: 2    GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
            G +D  + +W  +   L  T+ GH + V  V+ SP+     SG  D T K+W  + G+++
Sbjct: 1090 GSLDKTIKLWSRDG-RLFRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLL 1148

Query: 62   STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK-CLTV--THN 118
             T   H+ T+  V    D + + ++     I +W   + QLL +  G S   +TV  + +
Sbjct: 1149 KTITGHEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPD 1208

Query: 119  MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS---HSEEITCFTVTWDSQYLITGSRDMS 175
             + I +G  D ++++W      H+ D +   +   H + +   + + D + L + S D +
Sbjct: 1209 GQTIAAGSEDKTVKLW------HRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKT 1262

Query: 176  LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
            +K+W++  GKL + L GH D V  V  +   K+ + S S+D+ + +W+   G E     G
Sbjct: 1263 IKLWRIADGKLVKTLKGHNDSVWDVNFSSDGKA-IASASRDNTIKLWNRH-GIELETFTG 1320

Query: 236  HLGCVTCVKLAGDGTVAMS 254
            H G V  V    D  +  S
Sbjct: 1321 HSGGVYAVNFLPDSNIIAS 1339

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q3ULA2|FBW1A_MOUSE F-box/WD repeat-containing protein 1A OS=Mus musculus GN=Btrc PE=1 SV=2

 Score = 95.1 bits (235), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 116/274 (42%), Gaps = 36/274 (13%)

Query: 11  WQMNSHELQ------STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           W+   H LQ       T +G    V C+      I  VSG  DNT K+W  +        
Sbjct: 286 WRCGRHSLQRIHCRSETSKG----VYCLQYDDQKI--VSGLRDNTIKIWDKSTLECKRIL 339

Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
             H  ++L +    D R ++T      + VW  +  ++L + +    C  V H   N   
Sbjct: 340 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNAGEMLNTLI--HHCEAVLHLRFNNGM 395

Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
           +V+   D S+ +W  +  T     R  V H   +    V +D +Y+++ S D ++KVW  
Sbjct: 396 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNT 453

Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
              +  + L GH   ++C+        LVVSGS D+ + +WD+E G     L GH   V 
Sbjct: 454 STCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 510

Query: 242 CVKL--------AGDGTVA----MSDLPPSRPAG 263
           C++         A DG +     M+ L P  PAG
Sbjct: 511 CIRFDNKRIVSGAYDGKIKVWDLMAALDPRAPAG 544

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Recognizes and binds to phosphorylated target proteins. SCF(BTRC) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(BTRC) mediates the ubiquitination of NFKBIA, NFKBIB and NFKBIE; the degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. Ubiquitination of NFKBIA occurs at 'Lys-21' and 'Lys-22'. SCF(BTRC) mediates the ubiquitination of phosphorylated NFKB1/nuclear factor NF-kappa-B p105 subunit, ATF4, SMAD3, SMAD4, CDC25A, DLG1, FBXO5 and probably NFKB2. SCF(BTRC) mediates the ubiquitination of phosphorylated SNAI1. May be involved in ubiquitination and subsequent proteasomal degradation through a DBB1-CUL4 E3 ubiquitin-protein ligase. Required for activation of NFKB-mediated transcription by IL1B, MAP3K14, MAP3K1, IKBKB and TNF. Required for proteolytic processing of GLI3.

Mus musculus (taxid: 10090)

>sp|Q91854|TRCB_XENLA Beta-TrCP OS=Xenopus laevis GN=fbxw1 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 115/274 (41%), Gaps = 36/274 (13%)

Query: 11  WQMNSHELQ------STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           W+   H LQ       T +G    V C+      I  VSG  DNT K+W           
Sbjct: 215 WRCGRHSLQRIHCRSETSKG----VYCLQYDDQKI--VSGLRDNTIKIWDKNTLECKRVL 268

Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
             H  ++L +    D R ++T      + VW  +  ++L + +    C  V H   N   
Sbjct: 269 MGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEAVLHLRFNNGM 324

Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
           +V+   D S+ +W  +  T     R  V H   +    V +D +Y+++ S D ++KVW  
Sbjct: 325 MVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNT 382

Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
              +  + L GH   ++C+        LVVSGS D+ + +WD+E G     L GH   V 
Sbjct: 383 STCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 439

Query: 242 CVKL--------AGDGTVAMSD----LPPSRPAG 263
           C++         A DG + + D    L P  PAG
Sbjct: 440 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 473

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. May participate in Wnt signaling.

Xenopus laevis (taxid: 8355)

>sp|Q9Y297|FBW1A_HUMAN F-box/WD repeat-containing protein 1A OS=Homo sapiens GN=BTRC PE=1 SV=1

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 115/274 (41%), Gaps = 36/274 (13%)

Query: 11  WQMNSHELQ------STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           W+   H LQ       T +G    V C+      I  VSG  DNT K+W           
Sbjct: 286 WRCGRHSLQRIHCRSETSKG----VYCLQYDDQKI--VSGLRDNTIKIWDKNTLECKRIL 339

Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
             H  ++L +    D R ++T      + VW  +  ++L + +    C  V H   N   
Sbjct: 340 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEAVLHLRFNNGM 395

Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
           +V+   D S+ +W  +  T     R  V H   +    V +D +Y+++ S D ++KVW  
Sbjct: 396 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNT 453

Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
              +  + L GH   ++C+        LVVSGS D+ + +WD+E G     L GH   V 
Sbjct: 454 STCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 510

Query: 242 CVKL--------AGDGTVAMSD----LPPSRPAG 263
           C++         A DG + + D    L P  PAG
Sbjct: 511 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 544

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Recognizes and binds to phosphorylated target proteins. SCF(BTRC) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(BTRC) mediates the ubiquitination of NFKBIA, NFKBIB and NFKBIE; the degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. Ubiquitination of NFKBIA occurs at 'Lys-21' and 'Lys-22'. SCF(BTRC) mediates the ubiquitination of phosphorylated NFKB1/nuclear factor NF-kappa-B p105 subunit, ATF4, SMAD3, SMAD4, CDC25A, DLG1, FBXO5 and probably NFKB2. SCF(BTRC) mediates the ubiquitination of phosphorylated SNAI1. May be involved in ubiquitination and subsequent proteasomal degradation through a DBB1-CUL4 E3 ubiquitin-protein ligase. Required for activation of NFKB-mediated transcription by IL1B, MAP3K14, MAP3K1, IKBKB and TNF. Required for proteolytic processing of GLI3.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
242025112	1589	conserved hypothetical protein [Pediculu	0.915	0.225	0.541	1e-116
312383066	760	hypothetical protein AND_03985 [Anophele	0.946	0.488	0.511	1e-114
158293097	1855	AGAP004827-PA [Anopheles gambiae str. PE	0.946	0.2	0.511	1e-113
307192123	1582	Uncharacterized WD repeat-containing pro	0.951	0.235	0.509	1e-112
170032224	799	conserved hypothetical protein [Culex qu	0.946	0.464	0.502	1e-112
157116902	1839	hypothetical protein AaeL_AAEL001276 [Ae	0.946	0.201	0.502	1e-111
332025516	1571	Uncharacterized WD repeat-containing pro	0.951	0.237	0.498	1e-111
307188359	1566	Uncharacterized WD repeat-containing pro	0.941	0.235	0.506	1e-109
195155354	2004	GL16699 [Drosophila persimilis] gi|19411	0.943	0.184	0.489	1e-109
322787093	1376	hypothetical protein SINV_03779 [Solenop	0.951	0.271	0.482	1e-108

>gi|242025112|ref|XP_002432970.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518479|gb|EEB20232.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/451 (54%), Positives = 296/451 (65%), Gaps = 92/451 (20%)

Query: 2    GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
            GG D LVN+WQMNSHELQ TMEGHL++V+ VA++ N +FAVSGSED+TA+VWGLTLG VV
Sbjct: 1138 GGTDSLVNIWQMNSHELQYTMEGHLSSVTSVALAANGLFAVSGSEDHTARVWGLTLGLVV 1197

Query: 62   STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS-KCLTVTHNMK 120
            S F+ HQ+T+  V+V+ DSRRV++ D+ G + +W+AD+A  L +  G + K L V+ NMK
Sbjct: 1198 SVFRGHQTTVTIVSVMLDSRRVISCDRGGTVFIWLADDATHLQTITGTAGKSLQVSSNMK 1257

Query: 121  YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQ 180
            Y V    +NSLRIW       +DDE++ V+HS+EI+CF +T DS  +ITGS+D SLKVWQ
Sbjct: 1258 YAVCAQNENSLRIWSLI----RDDEKYVVNHSDEISCFVITMDSTMVITGSKDQSLKVWQ 1313

Query: 181  VVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNL--------------------- 219
            + GGKL QVL+GHTDHV+CVAV++ NKS V+SGSKDSNL                     
Sbjct: 1314 LAGGKLTQVLMGHTDHVTCVAVSM-NKSQVISGSKDSNLIVWDIITGADLFTLTGHLGFI 1372

Query: 220  ---------------------IVWDMETGGEEHFLAGH---LG----------------- 238
                                 IVWD++ G +   L  H   LG                 
Sbjct: 1373 TCVQLSADGTLAISGSEDKCIIVWDVQKGRQLSSLTLHVPILGLCMASDASRIAVHLLES 1432

Query: 239  ------CV-----TCVKL----AGDGTVAMSDLPPSRPAG-PKRPLRRLLKKEVSLDTYT 282
                  C+     T VKL    A    ++  DL PS  AG  KRP+RRLLKKEVSLDTYT
Sbjct: 1433 TSLPIVCLHNTPATYVKLPTYVAPAKEISAPDLRPS--AGLMKRPMRRLLKKEVSLDTYT 1490

Query: 283  WQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQH 342
            WQ+KYGHLTS+IMMAAVDERLKRRFSVSASMEEISKIP   N GSQ LGPEQAALAQSQH
Sbjct: 1491 WQKKYGHLTSNIMMAAVDERLKRRFSVSASMEEISKIP---NQGSQQLGPEQAALAQSQH 1547

Query: 343  FDQLEALWNKKSPPRSRRFEHSMSKQNSYSS 373
            FDQLEALWNK+SPPR RR +  +SKQNS  S
Sbjct: 1548 FDQLEALWNKRSPPR-RRLQ--LSKQNSRQS 1575

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383066|gb|EFR28289.1| hypothetical protein AND_03985 [Anopheles darlingi]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/450 (51%), Positives = 277/450 (61%), Gaps = 79/450 (17%)

Query: 8   VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH 67
           V +WQ+NS EL S +EGH  TV+CV+ +PN     SGSED T  VW L LG+V +TFK H
Sbjct: 115 VQIWQLNSPELTSILEGHTATVTCVSFAPNCELIASGSEDKTVNVWSLALGTVTATFKGH 174

Query: 68  QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDG 127
            ++I     + DSRR++++D+ G + VW+AD+  +L S  GP KCL+VT+NMK+ V  +G
Sbjct: 175 TTSITTATFMMDSRRIISADRDGCLYVWIADSGIVLQSVQGPHKCLSVTNNMKFAVCTNG 234

Query: 128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA 187
           DNSLRIW  +    ++DE++TVSHS+EITCF +T DS Y+ITGSRDMSLKVWQ  GGKLA
Sbjct: 235 DNSLRIWSLT----REDEKYTVSHSDEITCFVITADSLYIITGSRDMSLKVWQATGGKLA 290

Query: 188 QVLVGHTDHVSCVAVAVTNKSLVVSGSK-------------------------------- 215
           QVLVGHTD VSCVAV+VT KS V+SGSK                                
Sbjct: 291 QVLVGHTDAVSCVAVSVTTKSQVISGSKDSNLIIWDIHTGEEIHTLAGHLGPVTCVKVSA 350

Query: 216 ----------DSNLIVWDMETGGEEHFLAGHL---------------------GCVTCVK 244
                     D  LIVW+ + G     L  H+                      C+  + 
Sbjct: 351 DGTTAVSGSDDKTLIVWETKRGLALTSLQLHVQFTRFDISLECSRIVVQLVDSSCLPIIC 410

Query: 245 LAGDGTVAMS---------DLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIM 295
           L       M          D+   RPAGPKRP RRLLKKEVSLDTYTWQ+KY HLTSS+M
Sbjct: 411 LHNSPASYMKLPTYSAPARDVEDLRPAGPKRPARRLLKKEVSLDTYTWQKKYAHLTSSVM 470

Query: 296 MAAVDERLKRRFSVSASMEEISKIPIKDNVGSQG-LGPEQAALAQSQHFDQLEALWNKKS 354
           MA VDERLKRRFSVSASMEEISK+    NV SQ  LGPEQAALAQSQHFDQLEALWNK+S
Sbjct: 471 MAQVDERLKRRFSVSASMEEISKLAEAKNVESQANLGPEQAALAQSQHFDQLEALWNKRS 530

Query: 355 PPRSRRFEHSMSKQNSY-SSRQHSVDTDEL 383
           PPR RR   S+S+Q+S    R  S D DE 
Sbjct: 531 PPR-RRLNASLSRQSSLVEDRIDSSDEDEF 559

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293097|ref|XP_314366.4| AGAP004827-PA [Anopheles gambiae str. PEST] gi|157016942|gb|EAA09696.4| AGAP004827-PA [Anopheles gambiae str. PEST]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/450 (51%), Positives = 283/450 (62%), Gaps = 79/450 (17%)

Query: 8    VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH 67
            V +WQ+NS EL S +EGH  TV+CV+ +PN     SGSED T  VW L LG+V +TFK H
Sbjct: 1243 VQIWQLNSPELTSILEGHSATVTCVSFAPNCELVASGSEDKTVNVWSLGLGTVTATFKGH 1302

Query: 68   QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDG 127
             ++I +V  + D+RR++++D+ G++ VW++D+  +L S  GP KCL+VT+NMK+ V  +G
Sbjct: 1303 CTSISSVTFMMDARRIISADRDGLLYVWISDSGMILQSVQGPHKCLSVTNNMKFAVCTNG 1362

Query: 128  DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA 187
            D+SLRIW  +    ++DE++TVSHS+EITCF +T DS Y+ITGSRDMSLKVWQ  GGKLA
Sbjct: 1363 DSSLRIWSLT----REDEKYTVSHSDEITCFIITADSLYVITGSRDMSLKVWQATGGKLA 1418

Query: 188  QVLVGHTDHVSCVAVAVTNKSLVVSGSK-------------------------------- 215
            QVLVGHTD V+CVAV+VTNKS V+SGSK                                
Sbjct: 1419 QVLVGHTDAVTCVAVSVTNKSQVISGSKDSNLIIWDIHTGEEIHTLAGHLGPVTCVKVSA 1478

Query: 216  ----------DSNLIVWDMETGGEEHFLAGH---------LGCVTCVKLAGDGT----VA 252
                      D  LIVW+ + G     L  H         L C   V    D +    + 
Sbjct: 1479 DGTTAVSGSDDKTLIVWETKRGLALTSLQLHVQFTRFDISLECSRIVVQLVDNSCLPIIC 1538

Query: 253  MSDLPPS-----------------RPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIM 295
            + + P S                 RPAGPKRP RRLLKKEVSLDTYTWQ+KY HLTSS+M
Sbjct: 1539 LHNSPASYIKLPTYSAPARDVEDLRPAGPKRPARRLLKKEVSLDTYTWQKKYAHLTSSVM 1598

Query: 296  MAAVDERLKRRFSVSASMEEISKIPIKDNVGSQG-LGPEQAALAQSQHFDQLEALWNKKS 354
            MA VDERLKRRFSVSASMEEISK+    NV SQ  LGPEQAALAQSQHFDQLEALWNK+S
Sbjct: 1599 MAQVDERLKRRFSVSASMEEISKLAEAKNVESQATLGPEQAALAQSQHFDQLEALWNKRS 1658

Query: 355  PPRSRRFEHSMSKQNSY-SSRQHSVDTDEL 383
            PPR RR   S+S+Q+S    R  S D DE 
Sbjct: 1659 PPR-RRLNASLSRQSSLVEDRIDSSDEDEF 1687

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192123|gb|EFN75451.1| Uncharacterized WD repeat-containing protein alr3466 [Harpegnathos saltator]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/451 (50%), Positives = 286/451 (63%), Gaps = 78/451 (17%)

Query: 2    GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
            GG+D LVN+WQ+N+HEL ST+EGH+ +V+C+A S + +F  SGSED T +VWGLTLG VV
Sbjct: 1134 GGVDSLVNLWQLNTHELLSTLEGHIASVTCIAFSASGLFVASGSEDKTVRVWGLTLGLVV 1193

Query: 62   STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
            +TF+ HQ+ I AV  + D RRVV+SD+AG I VW AD+  L+ S  GP +C  V  +M+Y
Sbjct: 1194 ATFR-HQAPITAVTAMLDGRRVVSSDRAGTIRVWAADSGTLIQSVCGPGRCFAVASDMRY 1252

Query: 122  IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
             V G  DN +RI          +E+  VSHS++ITC   T DSQYLITGSRDMSLKVWQ+
Sbjct: 1253 AVCGSDDNQVRIISLGV---GPEEKHQVSHSQDITCLVATPDSQYLITGSRDMSLKVWQL 1309

Query: 182  VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNL---------------------- 219
             GGKL+QVLVGHTDHV+CVAVAV +KS+VVSGS+D+NL                      
Sbjct: 1310 AGGKLSQVLVGHTDHVTCVAVAVLDKSIVVSGSRDANLIVWDINTGADLHTLTGHLGYVT 1369

Query: 220  --------------------IVWDMETGGEEHFLAGHLGCV------TCVKLA------- 246
                                IVWD + G     +  H+  +       C ++A       
Sbjct: 1370 CVRISGDGTLAASGSEDKSLIVWDTKKGTSLSSIMLHVPVLGVEISTDCSRMAVHLLEHK 1429

Query: 247  -------GDGTVAMSDLPPS------RPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSS 293
                    +       LPP       RP GPKRP RRLLKKEVSLDTYTWQRKYGHLTS 
Sbjct: 1430 CMPILCLHNTPAQYVKLPPYVAPRDLRPPGPKRPARRLLKKEVSLDTYTWQRKYGHLTSG 1489

Query: 294  IMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQ-GLGPEQAALAQSQHFDQLEALWNK 352
            I++++V+ERLKRRFSVSASMEEISK    D  GSQ GLGPEQAALAQSQHFDQLEALWNK
Sbjct: 1490 IIVSSVEERLKRRFSVSASMEEISK---ADLSGSQSGLGPEQAALAQSQHFDQLEALWNK 1546

Query: 353  KS-PPRSRRFEHSMSKQNSYSSRQHSVDTDE 382
            +S PPR R    +++KQ+S  + + S D++E
Sbjct: 1547 QSPPPRPRGLARTLTKQSSLQATRIS-DSEE 1576

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032224|ref|XP_001843982.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872098|gb|EDS35481.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/450 (50%), Positives = 280/450 (62%), Gaps = 79/450 (17%)

Query: 8   VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH 67
           + +WQ+N  EL + +EGH  TV+CV+ +PN  F VSGSED T  VW L LGSV +TFK H
Sbjct: 183 IQIWQLNGPELTAILEGHSGTVTCVSFAPNCEFVVSGSEDKTVNVWSLALGSVTATFKGH 242

Query: 68  QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDG 127
            + + +V  + DSRR++++D+   + VW++D+  +L S  GP KCL VT+NMK+ V  +G
Sbjct: 243 NTFVTSVTFMMDSRRIISADRDSCLFVWMSDSGTILQSVQGPFKCLAVTNNMKFAVCTNG 302

Query: 128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA 187
           D SLRIW  +    ++DE+FTVSHS EIT F +T DS YLI+GS+DMSLKVWQV GGKLA
Sbjct: 303 DTSLRIWSLT----REDEKFTVSHSGEITSFIITADSLYLISGSKDMSLKVWQVSGGKLA 358

Query: 188 QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSN----------------------------- 218
           QVLVGH+D V+CVAV+VTNK+ V+SGSKD+N                             
Sbjct: 359 QVLVGHSDAVTCVAVSVTNKNQVISGSKDTNLIIWDIHTGEEIHTLAGHLGPVTCVKVSA 418

Query: 219 -------------LIVWDMETGGEEHFLAGH---------LGC--------------VTC 242
                        LIVW+M+ G     L  H         L C              V C
Sbjct: 419 DGTTAVSGSDDKTLIVWEMKRGLALTSLQMHVQFTRFDISLECSRIVVQLVDSSCLPVIC 478

Query: 243 VKLAGDGTVAM-------SDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIM 295
           +  +    + +        D+   RPAGPKRP RRLLKKEVSLDTYTWQ+KY HLTSS+M
Sbjct: 479 LHNSPASYIKLPTYSAPARDVEDLRPAGPKRPARRLLKKEVSLDTYTWQKKYAHLTSSVM 538

Query: 296 MAAVDERLKRRFSVSASMEEISKIPIKDNVGSQG-LGPEQAALAQSQHFDQLEALWNKKS 354
           MA VDERLKRRFSVSASMEEISK+    N  SQ  +GPEQAALAQSQHFDQLEALWNK+S
Sbjct: 539 MAQVDERLKRRFSVSASMEEISKLAEAKNTESQANIGPEQAALAQSQHFDQLEALWNKRS 598

Query: 355 PPRSRRFEHSMSKQNSY-SSRQHSVDTDEL 383
           PPR RR   S+S+Q+S    R  S D DE 
Sbjct: 599 PPR-RRMNPSLSRQSSLVEDRIDSSDEDEF 627

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116902|ref|XP_001652900.1| hypothetical protein AaeL_AAEL001276 [Aedes aegypti] gi|108883428|gb|EAT47653.1| AAEL001276-PA [Aedes aegypti]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/450 (50%), Positives = 278/450 (61%), Gaps = 79/450 (17%)

Query: 8    VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH 67
            + +WQ+N+ EL + +EGH  TV+CV+ +PN  F  SGSED T  VW L LG++V+TFK H
Sbjct: 1235 IQIWQLNTPELTAILEGHTGTVTCVSFAPNCEFVASGSEDKTVNVWSLALGTIVTTFKGH 1294

Query: 68   QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDG 127
             + + +V  L DSRR++++D+   + VW+AD+  +L S  GP KCL VT+NMK+ V  +G
Sbjct: 1295 NTFVTSVTFLMDSRRIISADRESCLFVWMADSGTILQSVQGPFKCLAVTNNMKFAVCTNG 1354

Query: 128  DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA 187
            D SLRIW  +    ++DE+F VSHS EITCF +T DS YLI+GS+DMSLKVWQ  GGKLA
Sbjct: 1355 DTSLRIWSLT----REDEKFLVSHSGEITCFIITADSLYLISGSKDMSLKVWQASGGKLA 1410

Query: 188  QVLVGHTDHVSCVAVAVTNKSLVVSGSK-------------------------------- 215
            QVLVGHTD V+CVAV+VTNKS V+SGSK                                
Sbjct: 1411 QVLVGHTDAVTCVAVSVTNKSQVISGSKDSNLIIWDIHTGEEIHTLAGHLGPVTCVKVSA 1470

Query: 216  ----------DSNLIVWDMETGGEEHFLAGH---------LGCVTCVKLAGDGT----VA 252
                      D  LIVW+++ G     L  H         L C   V    D +    + 
Sbjct: 1471 DGTTAVSGSDDKTLIVWEIKRGLALTSLQLHVQFTRFDISLECSRIVVQLVDSSCLPIIC 1530

Query: 253  MSDLPPS-----------------RPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIM 295
            + + P S                 RPAGPKRP RRLLKKEVSLDTYTWQ+KY HLTSS+M
Sbjct: 1531 LHNSPASYIKLPTYSAPARDVEDLRPAGPKRPARRLLKKEVSLDTYTWQKKYAHLTSSVM 1590

Query: 296  MAAVDERLKRRFSVSASMEEISKIPIKDNVGS-QGLGPEQAALAQSQHFDQLEALWNKKS 354
            MA VDERLKRRFSVSASMEEISK+     + S Q LGPEQAALAQSQHFDQLEALWNK+S
Sbjct: 1591 MAQVDERLKRRFSVSASMEEISKLAESKTMESQQNLGPEQAALAQSQHFDQLEALWNKRS 1650

Query: 355  PPRSRRFEHSMSKQNSY-SSRQHSVDTDEL 383
            PPR RR   S+S+Q+S    R  S D DE 
Sbjct: 1651 PPR-RRVNASLSRQSSLVEDRIESSDEDEF 1679

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025516|gb|EGI65679.1| Uncharacterized WD repeat-containing protein alr3466 [Acromyrmex echinatior]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/451 (49%), Positives = 286/451 (63%), Gaps = 78/451 (17%)

Query: 2    GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
            GG+D LVN+WQ+N+HEL ST+EGH+ +++C+A S + +F  SGSED T +VWGLTLG VV
Sbjct: 1099 GGVDSLVNLWQLNTHELLSTLEGHIASITCIAFSASELFVASGSEDKTVRVWGLTLGLVV 1158

Query: 62   STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
            +TF+ HQ+ + AV  + D RRVV+SD+AG I VW AD   L+ S  GP +C  V  +M+Y
Sbjct: 1159 ATFR-HQAPVTAVTAMLDGRRVVSSDRAGSIRVWAADTGTLIQSVCGPGRCFAVASDMRY 1217

Query: 122  IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
             V G GDN +RI          +E+  VSHS++ITC   T DSQYLITGSRDMSLKVWQ+
Sbjct: 1218 AVCGSGDNQVRIISLGA---GPEEKHQVSHSQDITCLVATPDSQYLITGSRDMSLKVWQL 1274

Query: 182  VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNL---------------------- 219
             GGKL+QVLVGHTDHV+CVAVAV +KS+VVSGS+D+NL                      
Sbjct: 1275 AGGKLSQVLVGHTDHVTCVAVAVLDKSIVVSGSRDANLIVWDINTGADLHTLVGHLGYVT 1334

Query: 220  --------------------IVWDMETGGEEHFLAGHLGCV------TCVKLA------- 246
                                IVWD + G     +  H+  +       C ++A       
Sbjct: 1335 CVRLSGDGTLAVSGSEDKSLIVWDTKKGTPLSSIMLHVPVLGVEMSTDCSRMAVHLLEHK 1394

Query: 247  -------GDGTVAMSDLPPS------RPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSS 293
                    +       LPP       RP GPKRP +RLLKKEVSLDTYTWQRKYGHLTS 
Sbjct: 1395 CMPILCLHNTPAQYVKLPPYVAPRDLRPPGPKRPAKRLLKKEVSLDTYTWQRKYGHLTSG 1454

Query: 294  IMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQ-GLGPEQAALAQSQHFDQLEALWNK 352
            I++++++ERLKRRFSVSASMEEIS+  +    GSQ GLGPEQAALAQSQHFDQLEALWNK
Sbjct: 1455 IIVSSIEERLKRRFSVSASMEEISQAGL---AGSQSGLGPEQAALAQSQHFDQLEALWNK 1511

Query: 353  KS-PPRSRRFEHSMSKQNSYSSRQHSVDTDE 382
            +S PPR R    +++KQ+S  + + S D++E
Sbjct: 1512 QSPPPRPRGLVRTLTKQSSLQATRIS-DSEE 1541

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188359|gb|EFN73134.1| Uncharacterized WD repeat-containing protein alr3466 [Camponotus floridanus]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/460 (50%), Positives = 286/460 (62%), Gaps = 91/460 (19%)

Query: 2    GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
            GG+D LVN+WQ+N+HEL ST+EGH+ +++C+A S + +F  SGSED T +VWGLTLG VV
Sbjct: 1122 GGVDSLVNLWQLNTHELLSTLEGHIASITCIAFSASGLFVASGSEDKTVRVWGLTLGLVV 1181

Query: 62   STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
            +TF+ HQ+ + AV  + D RRVV+SD+AGVI VW AD+  L+ S  GP +C  V  +M+Y
Sbjct: 1182 ATFR-HQAPVTAVTAMLDGRRVVSSDRAGVIRVWAADSGTLIQSVCGPGRCFAVASDMRY 1240

Query: 122  IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
             V G GDN +RI          +E+  VSHS++ITC   T DSQYLITGSRDMSLKVWQ+
Sbjct: 1241 AVCGSGDNQVRILSLGA---GPEEKHQVSHSQDITCLVATPDSQYLITGSRDMSLKVWQL 1297

Query: 182  VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSN----------------------- 218
            VGGKL+QVLVGHTDHV+CVAVAV +KS+VVSGS+D+N                       
Sbjct: 1298 VGGKLSQVLVGHTDHVTCVAVAVLDKSIVVSGSRDANLIVWDINTGTDLHTLTGHLGYVT 1357

Query: 219  -------------------LIVWDMETG-------------GEE----------HFLAGH 236
                               LIVWD + G             G E          H L   
Sbjct: 1358 CVRLSGDGTLAASGSEDKSLIVWDTKKGTPLSSIMLHVPVLGVEMSTDCSRMAVHLLEHK 1417

Query: 237  LGCVTC--------VKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYG 288
               + C        VKL     VA  DL   RP GPKRP RRLLKKEVSLDTYTWQRKYG
Sbjct: 1418 CMPILCLHNTPAQYVKLPL--YVAPRDL---RPPGPKRPARRLLKKEVSLDTYTWQRKYG 1472

Query: 289  HLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQ-GLGPEQAALAQSQHFDQLE 347
            HLTS I ++ ++   KRRFSVSASMEEISK  +    GSQ GLGPEQAALAQSQHFDQLE
Sbjct: 1473 HLTSDIRVSNIE---KRRFSVSASMEEISKAGL---AGSQPGLGPEQAALAQSQHFDQLE 1526

Query: 348  ALWNKKS-PPRSRRFEHSMSKQNSYSSRQHSVDTDELSSP 386
            ALWNK+S PPR R    +++KQ+S  + + S D++E   P
Sbjct: 1527 ALWNKQSPPPRPRGLARTLTKQSSLQATRIS-DSEEEDIP 1565

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195155354|ref|XP_002018570.1| GL16699 [Drosophila persimilis] gi|194114366|gb|EDW36409.1| GL16699 [Drosophila persimilis]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/435 (48%), Positives = 282/435 (64%), Gaps = 65/435 (14%)

Query: 8    VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH 67
            V++ ++N+ E Q ++EGH   V+C+  +PN  F  +GS+D   +VW L     ++TFK H
Sbjct: 1329 VHLMRINTPEYQCSLEGHAGVVNCLKFAPNGEFLTTGSDDRLVQVWNLAATETINTFKGH 1388

Query: 68   QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDG 127
             + ++ V VL DS RV+++D+  ++ VW+A +  LL +  GP K L VT+NM++  S +G
Sbjct: 1389 AAPVIKVVVLMDSLRVISTDRDSLLLVWMASSGNLLQTIQGPYKSLVVTNNMRFAASSNG 1448

Query: 128  DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA 187
            DN+L+IW  +    ++DE+++VSHS+EITCF ++ DS ++ITGSRDMSLKVWQ  GGKL+
Sbjct: 1449 DNTLKIWSLT----QEDEKYSVSHSDEITCFEISADSMHIITGSRDMSLKVWQSTGGKLS 1504

Query: 188  QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAG 247
            QVLVGH+D V+CVAV+VTNK+ V+SGSKD+NLI+WD+ TG E H LAGHLG V  VK++ 
Sbjct: 1505 QVLVGHSDAVTCVAVSVTNKTQVLSGSKDTNLILWDLLTGEEVHTLAGHLGPVIGVKVSA 1564

Query: 248  DGTVAMS---------------------------------DLP----------------- 257
            DG+ A+S                                 +LP                 
Sbjct: 1565 DGSTAVSGSDDKTLIMHVPFTHFDISLEVSRVLVQLVDSYNLPVICLHNTPAQYVKLPTY 1624

Query: 258  --PSRPAGPKRP------LRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSV 309
              P++     RP      ++RLLKKEVSLDTYTWQ+KYGHLTSS+MMA VDERLKRRFSV
Sbjct: 1625 SGPTKDVDDLRPQGPKRQMKRLLKKEVSLDTYTWQKKYGHLTSSVMMAQVDERLKRRFSV 1684

Query: 310  SASMEEISKIP-IKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQ 368
            SASMEEISKI   K    +  +GPEQAALAQSQHFDQLEALWNK+SPPR RR    +S+Q
Sbjct: 1685 SASMEEISKIAENKTGASNANIGPEQAALAQSQHFDQLEALWNKRSPPR-RRHNAGLSRQ 1743

Query: 369  NSY-SSRQHSVDTDE 382
             S    R  S D DE
Sbjct: 1744 TSLVEDRLESSDDDE 1758

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787093|gb|EFZ13314.1| hypothetical protein SINV_03779 [Solenopsis invicta]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/460 (48%), Positives = 287/460 (62%), Gaps = 87/460 (18%)

Query: 2    GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVS---------GSEDNTAKV 52
            GG+D LVN+WQ+N+HEL STMEGH+ +++C+A S + +F  S         GSED T +V
Sbjct: 921  GGVDSLVNLWQLNTHELLSTMEGHIASITCIAFSASGLFVASDIKMCVNSSGSEDKTVRV 980

Query: 53   WGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKC 112
            WGLTLG VV+TF+ HQ+ + AV  + D RRVV+SD+AG I VW AD+  L+ S  GP +C
Sbjct: 981  WGLTLGLVVATFR-HQAPVTAVTAMLDGRRVVSSDRAGSIRVWAADSGTLIQSVCGPGRC 1039

Query: 113  LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR 172
              V  +M+Y + G GDN +R+          +E+  VSHS++ITC   T DSQYLITGSR
Sbjct: 1040 FAVASDMRYAICGAGDNQMRMISLGA---GPEEKHQVSHSQDITCLVATPDSQYLITGSR 1096

Query: 173  DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSN-------------- 218
            DMSLKVWQ+ GGKL+QVLVGHTDHV+CVAVAV +KS+VVSGS+D+N              
Sbjct: 1097 DMSLKVWQLAGGKLSQVLVGHTDHVTCVAVAVLDKSIVVSGSRDANLIVWDINTGADLHT 1156

Query: 219  ----------------------------LIVWDMETGGEEHFLAGHLGCV------TCVK 244
                                        L+VWD + G     +  H+  +       C +
Sbjct: 1157 LVGHLGYVTCVRLSGDGTLAVSGSEDKSLVVWDTKKGTPLSSIMLHVPVLGVEMSTDCSR 1216

Query: 245  LA--------------GDGTVAMSDLPPS------RPAGPKRPLRRLLKKEVSLDTYTWQ 284
            +A               +       LPP       RP GPKRP +RLLKKEVSLDTYTWQ
Sbjct: 1217 MAVHLLEHKCMPILCLHNTPAQYVKLPPYVAPRDLRPPGPKRPAKRLLKKEVSLDTYTWQ 1276

Query: 285  RKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQ-GLGPEQAALAQSQHF 343
            RKYGHLTS I++++++ER+KRRFSVSASMEEIS+  +    GSQ GLGPEQAALAQSQHF
Sbjct: 1277 RKYGHLTSGIIVSSIEERVKRRFSVSASMEEISQAGL---AGSQPGLGPEQAALAQSQHF 1333

Query: 344  DQLEALWNKKS-PPRSRRFEHSMSKQNSYSSRQHSVDTDE 382
            DQLEALWNK+S PPR R    +++KQ+S  + + S D++E
Sbjct: 1334 DQLEALWNKQSPPPRPRGLVRTLTKQSSLQATRIS-DSEE 1372

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
FB|FBgn0028496	1923	CG30116 [Drosophila melanogast	0.619	0.126	0.514	1.4e-108
WB|WBGene00004265	1592	qui-1 [Caenorhabditis elegans	0.622	0.153	0.279	4.3e-26
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.627	0.180	0.288	1.3e-25
ASPGD|ASPL0000046644	1311	AN2021 [Emericella nidulans (t	0.612	0.183	0.306	1.4e-24
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.561	0.609	0.280	2.9e-23
TAIR|locus:2097435	317	WDR5a "AT3G49660" [Arabidopsis	0.543	0.671	0.296	8e-23
ASPGD|ASPL0000006405	1878	AN6960 [Emericella nidulans (t	0.627	0.130	0.264	1e-22
ASPGD|ASPL0000038644	577	AN10391 [Emericella nidulans (	0.589	0.400	0.279	5.3e-21
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.543	0.691	0.276	8.4e-21
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.543	0.637	0.276	8.4e-21

FB|FBgn0028496 CG30116 [Drosophila melanogaster (taxid:7227)]

 Score = 680 (244.4 bits), Expect = 1.4e-108, Sum P(2) = 1.4e-108
 Identities = 127/247 (51%), Positives = 183/247 (74%)

Query:     8 VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH 67
             V++ ++N+ E Q T+EGH   VSC+  +PN  F  +GSED    +W L LG + ++FK H
Sbjct:  1236 VHLMRINTPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWNLALGEICNSFKGH 1295

Query:    68 QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDG 127
              + ++ V VL DS RV+++D+  ++ VW+A +  LL +  GP K L+VT+NM++ VS +G
Sbjct:  1296 TAPVVKVVVLMDSLRVISTDRDSMLLVWMAHSGNLLQTIQGPYKSLSVTNNMRFAVSTNG 1355

Query:   128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA 187
             DN+L+IW  +    ++DE+++VSHS+EITCF ++ DS ++I+GSRDMSLKVWQ  GGKL+
Sbjct:  1356 DNTLKIWSLT----QEDEKYSVSHSDEITCFEISADSVHIISGSRDMSLKVWQATGGKLS 1411

Query:   188 QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAG 247
             QVLVGH+D V+CVAV+VTNK+ V+SGSKD NLI+WD+ TG E H LAGHLG V  VK++ 
Sbjct:  1412 QVLVGHSDAVTCVAVSVTNKTQVLSGSKDMNLILWDLLTGEEVHTLAGHLGPVIGVKVSA 1471

Query:   248 DGTVAMS 254
             DG+ A+S
Sbjct:  1472 DGSTAVS 1478

GO:0016505 "apoptotic protease activator activity" evidence=NAS

WB|WBGene00004265 qui-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 296 (109.3 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
 Identities = 71/254 (27%), Positives = 132/254 (51%)

Query:     7 LVNVWQMNSHE-LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK 65
             +V +W +   + + +T++   + ++C+  S +S + +SG++     +     G VV    
Sbjct:  1187 IVALWDLEVCQCVFTTIQNKGDPITCIRYSVDSQYCISGNQAGCILILDAQNGGVVRELF 1246

Query:    66 SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA----DNAQLLYSALGPSKCLTVTHNMKY 121
              H S +L++  L  ++ +++ D  G + +W      D  +++ + + P   +  T  +  
Sbjct:  1247 MHSSEVLSIMSLVHNK-MISCDIQGKMVIWELFGDDDTPEMVATGVKPPIFVPPTGRIMV 1305

Query:   122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF-TVTWDSQYLITGSRDMSLKVWQ 180
                   +  ++IW   P+      R  +SHS+EITCF T      ++ TGSRDMSLK+WQ
Sbjct:  1306 GHCSLSNKEMKIW-AFPEEGPPVTRAKLSHSDEITCFATSPKGGNFIATGSRDMSLKIWQ 1364

Query:   181 VVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCV 240
             +  G L QVLVGH + V+C  ++   + LVVSG++D  +IVW++++G +          +
Sbjct:  1365 IDKGFLTQVLVGHENVVTCCCISFDER-LVVSGARDEKIIVWNVQSG-DMVCTVNTTAAI 1422

Query:   241 TCVKLAGDGTVAMS 254
             T + + GD TV  S
Sbjct:  1423 TSLSMTGDSTVVFS 1436

GO:0050913 "sensory perception of bitter taste" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0030424 "axon" evidence=IDA

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 304 (112.1 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 73/253 (28%), Positives = 122/253 (48%)

Query:     5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
             D  + +W   + ELQ T +GH   +  VA SP+    VSGS+DNT K+W L    +  + 
Sbjct:   981 DTTIKLWNSTTGELQQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLWDLATSELQQSL 1040

Query:    65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHNMKY 121
             + H  ++ AVA   D +++ +S     I +W +   +L  +  G S   + +T + + K 
Sbjct:  1041 EDHSRSVHAVAFSPDDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVTFSPDGKL 1100

Query:   122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
             + S   D ++++W  +P T +  +  T   S+ +     + D + L +G  D ++K+W  
Sbjct:  1101 LASNSYDGTIKLW--NPLTGELQQTLT-GRSDWVDSVAFSPDGKQLASGYYDSTIKLWDS 1157

Query:   182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
               G+L Q L GH+D +  V  +   K L+ SGS D    +WD  TG       GH   V 
Sbjct:  1158 ATGELLQTLEGHSDRIQSVVFSPDGK-LLASGSYDQTAKLWDPATGELLQIFEGHSKWVE 1216

Query:   242 CVKLAGDGTVAMS 254
              V  + DG +  S
Sbjct:  1217 SVAFSPDGKLLAS 1229

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000046644 AN2021 [Emericella nidulans (taxid:162425)]

 Score = 294 (108.6 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 77/251 (30%), Positives = 127/251 (50%)

Query:     6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK 65
             C++ ++   + +LQ  ++GH +  S +A S +S   V+GS D T ++W  T G +  TF 
Sbjct:   755 CIM-LFDTATGDLQKILKGHSHECSTMAFSSDSRQLVTGSVDCTVRLWNTTTGDLEKTFV 813

Query:    66 SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS-ALGPSKCLTVTHNMKYIVS 124
              H  T+L+VA+ SD R++V S     + +W A    LL + A G +  +  + + + I +
Sbjct:   814 GHTGTVLSVAISSDGRQIV-SGSIEAVKLWDAATGDLLKTLASGFAGSVAFSPDSRQIAA 872

Query:   125 GDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV-VG 183
             G  D  + IW  +    K  ER    H   I     + D + L+T S D ++K W + +G
Sbjct:   873 GFKDGKIFIWDAAGTLQKTLER----HPGAIMSIAFSPDVKQLVTCSTDSTIKRWDITIG 928

Query:   184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCV 243
             G   Q  VGH+ HV+ + ++   K ++ SGS D  + +WD  TG  +  L GHL  V  V
Sbjct:   929 G--VQEAVGHSKHVTTMVLSPDGK-VIASGSADKTIKLWDAATGDLQKTLTGHLDTVEKV 985

Query:   244 KLAGDGTVAMS 254
               + D    +S
Sbjct:   986 VFSLDNRQIVS 996

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 66/235 (28%), Positives = 117/235 (49%)

Query:     2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
             G  D  + VW++++ +   T++GH N V C   +P S   VSGS D + ++W +  G  +
Sbjct:   132 GSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL 191

Query:    62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTH 117
              T  +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + 
Sbjct:   192 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 251

Query:   118 NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRD 173
             N KYI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D
Sbjct:   252 NGKYILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSED 307

Query:   174 MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS--KDSNLIVWDMET 226
               + +W +   ++ Q L GHTD V C A   T ++++ S +   D  + +W  +T
Sbjct:   308 NMVYIWNLQSKEVVQKLQGHTDTVLCTACHPT-ENIIASAALENDKTIKLWKSDT 361

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

TAIR|locus:2097435 WDR5a "AT3G49660" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 8.0e-23, P = 8.0e-23
 Identities = 67/226 (29%), Positives = 112/226 (49%)

Query:     5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
             D  + +W + +  L  T+ GH N   CV  +P S   VSGS D T ++W +T G  +   
Sbjct:    92 DKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVL 151

Query:    65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
              +H   + AV    D   +V+S   G+  +W +     + + +     P   +  + N K
Sbjct:   152 PAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDENPPVSFVRFSPNGK 211

Query:   121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
             +I+ G  DN+LR+W  S  + K  + +T  H     C    F+VT + + +++GS D  +
Sbjct:   212 FILVGTLDNTLRLWNIS--SAKFLKTYT-GHVNAQYCISSAFSVT-NGKRIVSGSEDNCV 267

Query:   177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVW 222
              +W++   KL Q L GHT+ V  VA   T ++L+ SGS D  + +W
Sbjct:   268 HMWELNSKKLLQKLEGHTETVMNVACHPT-ENLIASGSLDKTVRIW 312

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0042393 "histone binding" evidence=IDA

GO:0048188 "Set1C/COMPASS complex" evidence=IPI

ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)]

 Score = 285 (105.4 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 67/253 (26%), Positives = 120/253 (47%)

Query:     5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
             D  V +W   +  LQ  ++GH ++V  V  S +S    SGS D T ++W  T G +  TF
Sbjct:   326 DGTVKIWDTATGTLQRMLKGHNDSVRSVVFSHDSRLIASGSNDRTVRIWETTTGLLRHTF 385

Query:    65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCL---TVTHNMKY 121
             + H+ +++AV+   DSRR+ ++   G + +W      L     G   C+   + + + + 
Sbjct:   386 EDHEDSVMAVSFAHDSRRLASASDGGNVKIWDTRTGSLQNVLEGHDDCVNSVSFSPDSRL 445

Query:   122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
             + S   D +++IW  +  +    +R    H++ +     + DS+ + + S DM++K+W  
Sbjct:   446 LASASDDRTVKIWHAATGSL---QRTLEGHNDWVRSVVFSHDSRLIASASDDMTVKIWDT 502

Query:   182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
                 L   L  H + V  V  +  ++ L+ S S D  + +WD  TG  E+ L GH   V 
Sbjct:   503 ATVPLQNNLESHDNWVRSVVFSHDSR-LLASASDDMTVKIWDTATGSLENTLEGHDDRVN 561

Query:   242 CVKLAGDGTVAMS 254
              V  + D  +  S
Sbjct:   562 SVSFSPDSRLLAS 574

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)]

 Score = 268 (99.4 bits), Expect = 5.3e-21, P = 5.3e-21
 Identities = 67/240 (27%), Positives = 111/240 (46%)

Query:    18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVL 77
             LQ+ +EGH   V  V+ S +S    S S+D T K+W    GS+  T + H   + +V   
Sbjct:   289 LQA-LEGHEAAVLSVSYSHDSRLLASASDDRTVKIWDTETGSLQHTLEGHSDLVRSVIFS 347

Query:    78 SDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHNMKYIVSGDGDNSLRIW 134
              DSR ++ S     + +W      L ++  G     + +  +H+ + + S   D++++IW
Sbjct:   348 HDSR-LLASASDSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSHDSQLLASASDDSTVKIW 406

Query:   135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT 194
              T   +    +     H + +     + DSQ L + S D ++K+W    G L   L GH 
Sbjct:   407 DTGTGSL---QHTLEGHRDWVRSVIFSHDSQLLASASDDSTVKIWDTGTGSLQHTLEGHR 463

Query:   195 DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
             D V  V  +  ++ L+ S S D  + +WD E G  +H L GH   VT V  + D  +  S
Sbjct:   464 DWVRSVIFSHDSR-LLASASDDRTVRIWDTEKGSHKHTLEGHSSLVTSVSFSHDSRLLAS 522

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 247 (92.0 bits), Expect = 8.4e-21, P = 8.4e-21
 Identities = 63/228 (27%), Positives = 112/228 (49%)

Query:     5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
             D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct:    82 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 141

Query:    65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
              +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct:   142 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 201

Query:   121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
             YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct:   202 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 257

Query:   177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS--KDSNLIVW 222
              +W +   ++ Q L GHTD V   A   T ++++ S +   D  + +W
Sbjct:   258 YIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 304

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 247 (92.0 bits), Expect = 8.4e-21, P = 8.4e-21
 Identities = 63/228 (27%), Positives = 112/228 (49%)

Query:     5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
             D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct:   108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 167

Query:    65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
              +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct:   168 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 227

Query:   121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
             YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct:   228 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 283

Query:   177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS--KDSNLIVW 222
              +W +   ++ Q L GHTD V   A   T ++++ S +   D  + +W
Sbjct:   284 YIWNLQTKEIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLW 330

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	392
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-45
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-38
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-37
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-32
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	7e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	9e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  157 bits (400), Expect = 2e-45
 Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 7/256 (2%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
           G  D  + VW + + EL  T++GH   V  VA S +  +  SGS D T ++W L  G  V
Sbjct: 27  GSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86

Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHN 118
            T   H S + +VA   D R + +S +   I VW  +  + L +  G +     +  + +
Sbjct: 87  RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD 146

Query: 119 MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV 178
             ++ S   D ++++W    +T K     T  H+ E+     + D + L++ S D ++K+
Sbjct: 147 GTFVASSSQDGTIKLW--DLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203

Query: 179 WQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG 238
           W +  GK    L GH + V+ VA +  +  L+ SGS+D  + VWD+ TG     L+GH  
Sbjct: 204 WDLSTGKCLGTLRGHENGVNSVAFS-PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN 262

Query: 239 CVTCVKLAGDGTVAMS 254
            VT +  + DG    S
Sbjct: 263 SVTSLAWSPDGKRLAS 278

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  138 bits (350), Expect = 3e-38
 Identities = 57/226 (25%), Positives = 106/226 (46%), Gaps = 9/226 (3%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
           G  D  + +W + + E   T+ GH + VS VA SP+     S S D T KVW +  G  +
Sbjct: 69  GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL 128

Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK---CLTVTHN 118
           +T + H   + +VA   D   V +S + G I +W     + + +  G +     +  + +
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD 188

Query: 119 MKYIVSGDGDNSLRIW-PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
            + ++S   D ++++W  ++ +           H   +     + D   L +GS D +++
Sbjct: 189 GEKLLSSSSDGTIKLWDLSTGKCLGT----LRGHENGVNSVAFSPDGYLLASGSEDGTIR 244

Query: 178 VWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
           VW +  G+  Q L GHT+ V+ +A +  +   + SGS D  + +WD
Sbjct: 245 VWDLRTGECVQTLSGHTNSVTSLAWS-PDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  136 bits (345), Expect = 2e-37
 Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 21  TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
           T++GH   V+CVA SP+     +GS D T KVW L  G ++ T K H   +  VA  +D 
Sbjct: 4   TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63

Query: 81  RRVVTSDKAGVIAVWVADNAQLLYSALGPSK---CLTVTHNMKYIVSGDGDNSLRIWPTS 137
             + +      I +W  +  + + +  G +     +  + + + + S   D ++++W   
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW--- 120

Query: 138 PQTHKDDERFTV-SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDH 196
                     T+  H++ +     + D  ++ + S+D ++K+W +  GK    L GHT  
Sbjct: 121 -DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE 179

Query: 197 VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           V+ VA +   + L+ S S D  + +WD+ TG     L GH   V  V  + DG +  S
Sbjct: 180 VNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  122 bits (308), Expect = 4e-32
 Identities = 59/211 (27%), Positives = 87/211 (41%), Gaps = 21/211 (9%)

Query: 61  VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS----ALGPSKCLTVT 116
             T K H   +  VA   D + + T    G I VW  +  +LL +               
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61

Query: 117 HNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT-VSHSEEITCFTVTWDSQYLITGSRDMS 175
               Y+ SG  D ++R+W         +   T   H+  ++    + D + L + SRD +
Sbjct: 62  DG-TYLASGSSDKTIRLWDLE----TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116

Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
           +KVW V  GK    L GHTD V+ VA +      V S S+D  + +WD+ TG     L G
Sbjct: 117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTG 175

Query: 236 HLGCVTCVKL----------AGDGTVAMSDL 256
           H G V  V            + DGT+ + DL
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  109 bits (273), Expect = 2e-26
 Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 10/244 (4%)

Query: 1   MGGMDCLVNVWQMNSH-ELQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLG 58
              +D  V +W +++  +L  T+EGH  +V+ +A SP+  + A   S D T K+W L  G
Sbjct: 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188

Query: 59  SVVSTFKSHQSTILAVAVLSDSRRVVTS-DKAGVIAVWVADNAQLLYSAL---GPSKCLT 114
             +ST   H   + ++A   D   ++ S    G I +W     +LL S L     S   +
Sbjct: 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS 248

Query: 115 VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM 174
            + +   + SG  D ++R+W     +     R    HS  +     + D + L +GS D 
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLR--SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG 306

Query: 175 SLKVWQVVGGKLAQVL--VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF 232
           ++++W +  GKL   L   GH   VS ++ +     LV  GS D  + +WD+ TG     
Sbjct: 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366

Query: 233 LAGH 236
           L GH
Sbjct: 367 LEGH 370

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.4 bits (233), Expect = 4e-21
 Identities = 65/255 (25%), Positives = 122/255 (47%), Gaps = 11/255 (4%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNS-IFAVSGSEDNTAKVWGLTLGSV 60
             +D  + +W + + +  ST+ GH + VS +A SP+  +   SGS D T ++W L+ G +
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 61  V-STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW-VADNAQLLYSALGPSK---CLTV 115
           + ST   H  ++++ +   D   + +    G I +W +  ++ LL +  G S     +  
Sbjct: 234 LRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292

Query: 116 THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVT-WDSQYLITGSRDM 174
           + + K + SG  D ++R+W                H   ++  + +   S  +  GS D 
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK-GHEGPVSSLSFSPDGSLLVSGGSDDG 351

Query: 175 SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA 234
           ++++W +  GK  + L GH++ V  V+ +   + +V SGS D  + +WD+ TG     L 
Sbjct: 352 TIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGR-VVSSGSTDGTVRLWDLSTGSLLRNLD 409

Query: 235 GHLGCVTCVKLAGDG 249
           GH   VT +  + DG
Sbjct: 410 GHTSRVTSLDFSPDG 424

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 83.6 bits (205), Expect = 2e-17
 Identities = 63/233 (27%), Positives = 117/233 (50%), Gaps = 14/233 (6%)

Query: 2   GGMDCLVNVWQMNS-HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGL-TLGS 59
           G  D  + +W +++   L+ST+ GH ++V   + SP+     SGS D T ++W L +  S
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSS 275

Query: 60  VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL-----GPSKCLT 114
           ++ T   H S++L+VA   D + + +    G + +W  +  +LL S       GP   L+
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335

Query: 115 VTHNMKYIVSGDG-DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD 173
            + +   +VSG   D ++R+W             T+     +   + + D + + +GS D
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLW----DLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTD 391

Query: 174 MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET 226
            ++++W +  G L + L GHT  V+ +  +   KSL  SGS D+ + +WD++T
Sbjct: 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA-SGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 76.7 bits (187), Expect = 3e-15
 Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 18/246 (7%)

Query: 19  QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAVAV 76
              + GH ++++ +A SP+    +SGS D T K+W L  G   + S    H S++  +A+
Sbjct: 58  SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 77  LS---DSRRVVTSDKAGVIAVW-VADNAQLLYSALGPSK---CLTVTHNMKYIVSGDG-D 128
            S   +S  + +S   G + +W ++   +L+ +  G S+    L  + + K + SG   D
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177

Query: 129 NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKL- 186
            ++++W                H++ ++    + D   LI +GS D ++++W +  GKL 
Sbjct: 178 GTIKLWDLRTGKP---LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234

Query: 187 AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH-FLAGHLGCVTCVKL 245
              L GH+D  S V+    + SL+ SGS D  + +WD+ +       L+GH   V  V  
Sbjct: 235 RSTLSGHSD--SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292

Query: 246 AGDGTV 251
           + DG +
Sbjct: 293 SPDGKL 298

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 66.3 bits (160), Expect = 8e-12
 Identities = 38/202 (18%), Positives = 84/202 (41%), Gaps = 6/202 (2%)

Query: 57  LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVT 116
           L         +  ++L++        ++      ++++    +  LL         +  +
Sbjct: 16  LKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSS-LLLRGHEDSITSIAFS 74

Query: 117 HNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTV---TWDSQYLITGSRD 173
            + + ++SG  D ++++W                H   ++   +     +S  L + S D
Sbjct: 75  PDGELLLSGSSDGTIKLWDLDNGEKLIKS-LEGLHDSSVSKLALSSPDGNSILLASSSLD 133

Query: 174 MSLKVWQVVG-GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF 232
            ++K+W +   GKL + L GH++ V+ +A +   K L    S D  + +WD+ TG     
Sbjct: 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193

Query: 233 LAGHLGCVTCVKLAGDGTVAMS 254
           LAGH   V+ +  + DG + ++
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIA 215

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.0 bits (154), Expect = 4e-11
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 11/165 (6%)

Query: 2   GGMDCLVNVWQMNSHELQSTM--EGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLG 58
           G  D  V +W + + +L S++  +GH   VS ++ SP+ S+    GS+D T ++W L  G
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361

Query: 59  SVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADN---AQLLYSALGPSKCLTV 115
             + T + H S +L+V+   D R V +    G + +W        + L         L  
Sbjct: 362 KPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Query: 116 THNMKYIVSGDGDNSLRIWPTSPQTHK----DDERFTVSHSEEIT 156
           + + K + SG  DN++R+W             D +   S S +++
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLS 465

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKL 245
           L + L GHT  V+CVA +   K L+ +GS D  + VWD+ETG     L GH G V  V  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 246 AGDGT 250
           + DGT
Sbjct: 60  SADGT 64

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVW 53
          +L  T++GH   V+ VA SP+     SGS+D T +VW
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 15 SHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVW 53
          S EL  T++GH   V+ VA SP+  +  SGS+D T K+W
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
           GKL + L GHT  V+ VA +  + +L+ SGS D  + VWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFS-PDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
           G+L + L GHT  V+ VA +  +   + SGS D  + +WD
Sbjct: 2   GELLKTLKGHTGPVTSVAFS-PDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.2 bits (96), Expect = 9e-04
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 6/138 (4%)

Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVST 63
           + +V VW +   +L + M+ H   V  +  S  +     SGS+D + K+W +  G  + T
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613

Query: 64  FKSHQSTILAVAVLSDSRRVVTSDKAG-VIAVWVADNAQL-LYSALGPSKCLTVTH--NM 119
            K+ ++ I  V   S+S R +    A   +  +   N +L L + +G SK ++     + 
Sbjct: 614 IKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS 672

Query: 120 KYIVSGDGDNSLRIWPTS 137
             +VS   DN+L++W  S
Sbjct: 673 STLVSSSTDNTLKLWDLS 690

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 151 HSEEITCFTVTWDSQYLITGSRDMSLKVW 179
           H+  +T    + D +YL +GS D ++K+W
Sbjct: 11  HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 151 HSEEITCFTVTWDSQYLITGSRDMSLKVW 179
           H+  +T    + D   L +GS D +++VW
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 58 GSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW 95
          G ++ T K H   + +VA   D + + +    G I +W
Sbjct: 2  GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
KOG0271|consensus	480		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0272|consensus	459		100.0
KOG0286|consensus	343		100.0
KOG0279|consensus	315		100.0
KOG0279|consensus	315		100.0
KOG0315|consensus	311		100.0
KOG0286|consensus	343		100.0
KOG0318|consensus	603		100.0
KOG0295|consensus	406		100.0
KOG0291|consensus	893		100.0
KOG0315|consensus	311		100.0
KOG0319|consensus	775		100.0
KOG0318|consensus	603		100.0
KOG0284|consensus	464		100.0
KOG0285|consensus	460		100.0
KOG0263|consensus	707		100.0
KOG0291|consensus	893		100.0
KOG0276|consensus	794		100.0
KOG0273|consensus	524		100.0
KOG0295|consensus	406		100.0
KOG0284|consensus	464		100.0
KOG0276|consensus	794		100.0
KOG0319|consensus	775		100.0
KOG0296|consensus	399		100.0
KOG0263|consensus	707		100.0
KOG0281|consensus	499		100.0
KOG0265|consensus	338		100.0
KOG0273|consensus	524		100.0
KOG0306|consensus	888		100.0
KOG0266|consensus	456		100.0
KOG0285|consensus	460		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292|consensus	1202		100.0
KOG0316|consensus	307		100.0
KOG0265|consensus	338		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0293|consensus	519		100.0
KOG0643|consensus	327		100.0
KOG0645|consensus	312		100.0
KOG0293|consensus	519		100.0
KOG0296|consensus	399		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0645|consensus	312		100.0
KOG0316|consensus	307		100.0
KOG0282|consensus	503		100.0
KOG0282|consensus	503		100.0
KOG0281|consensus	499		100.0
KOG0313|consensus	423		100.0
KOG0306|consensus	888		100.0
KOG0266|consensus	456		100.0
KOG1539|consensus	910		100.0
KOG1407|consensus	313		100.0
KOG0647|consensus	347		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0288|consensus	459		100.0
KOG0283|consensus	712		100.0
KOG1446|consensus	311		100.0
KOG0643|consensus	327		100.0
KOG0640|consensus	430		100.0
KOG1407|consensus	313		99.98
KOG0289|consensus	506		99.98
KOG0310|consensus	487		99.98
KOG0278|consensus	334		99.98
KOG0292|consensus	1202		99.97
KOG0275|consensus	508		99.97
KOG0274|consensus	537		99.97
KOG0305|consensus	484		99.97
KOG0313|consensus	423		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0294|consensus	362		99.97
KOG0277|consensus	311		99.97
KOG1036|consensus	323		99.97
KOG0275|consensus	508		99.97
KOG0277|consensus	311		99.97
KOG0299|consensus	479		99.97
KOG0308|consensus	735		99.97
KOG0305|consensus	484		99.97
KOG0278|consensus	334		99.97
KOG0299|consensus	479		99.97
KOG0289|consensus	506		99.97
KOG0268|consensus	433		99.97
KOG0973|consensus	942		99.97
KOG0274|consensus	537		99.97
KOG1446|consensus	311		99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0283|consensus	712		99.96
KOG0772|consensus	641		99.96
KOG1408|consensus	1080		99.96
KOG0300|consensus	481		99.96
KOG0640|consensus	430		99.96
KOG0288|consensus	459		99.96
KOG0308|consensus	735		99.96
KOG0772|consensus	641		99.96
KOG1539|consensus	910		99.96
KOG2106|consensus	626		99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG2106|consensus	626		99.96
KOG1063|consensus	764		99.96
KOG0268|consensus	433		99.96
KOG0310|consensus	487		99.96
KOG0973|consensus	942		99.96
KOG2048|consensus	691		99.96
KOG2048|consensus	691		99.96
KOG0300|consensus	481		99.96
KOG2055|consensus	514		99.96
KOG0264|consensus	422		99.95
KOG1332|consensus	299		99.95
KOG1036|consensus	323		99.95
KOG0646|consensus	476		99.95
KOG0267|consensus	825		99.95
PTZ00420	568	coronin; Provisional	99.95
KOG1332|consensus	299		99.95
KOG0264|consensus	422		99.95
KOG0641|consensus	350		99.95
KOG1273|consensus	405		99.95
KOG0294|consensus	362		99.95
KOG2096|consensus	420		99.95
KOG0641|consensus	350		99.95
KOG1408|consensus	1080		99.94
KOG0269|consensus	839		99.94
KOG0639|consensus	705		99.94
KOG0646|consensus	476		99.94
KOG0301|consensus	745		99.94
KOG2096|consensus	420		99.94
KOG0647|consensus	347		99.94
KOG0269|consensus	839		99.94
KOG1063|consensus	764		99.94
KOG0639|consensus	705		99.94
KOG0270|consensus	463		99.93
KOG0267|consensus	825		99.93
KOG0301|consensus	745		99.93
KOG1274|consensus	933		99.92
KOG0302|consensus	440		99.92
KOG1274|consensus	933		99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1273|consensus	405		99.92
KOG4283|consensus	397		99.92
KOG2055|consensus	514		99.92
KOG2445|consensus	361		99.92
KOG2445|consensus	361		99.92
KOG0650|consensus	733		99.91
KOG4283|consensus	397		99.91
KOG1963|consensus	792		99.91
KOG4378|consensus	673		99.91
KOG4328|consensus	498		99.91
KOG0321|consensus	720		99.91
KOG0302|consensus	440		99.9
KOG0321|consensus	720		99.9
KOG1445|consensus	1012		99.9
KOG2919|consensus	406		99.89
KOG1034|consensus	385		99.89
KOG4378|consensus	673		99.89
KOG1007|consensus	370		99.89
KOG4328|consensus	498		99.89
KOG0307|consensus	1049		99.88
KOG0307|consensus	1049		99.88
KOG0270|consensus	463		99.87
KOG1009|consensus	434		99.87
KOG0642|consensus	577		99.87
KOG2919|consensus	406		99.87
KOG1538|consensus	1081		99.87
KOG0650|consensus	733		99.86
KOG1587|consensus	555		99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG1538|consensus	1081		99.85
KOG1188|consensus	376		99.85
KOG0644|consensus	1113		99.85
KOG1034|consensus	385		99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG1009|consensus	434		99.84
KOG1188|consensus	376		99.84
KOG0322|consensus	323		99.84
KOG1963|consensus	792		99.84
KOG0322|consensus	323		99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.83
KOG4227|consensus	609		99.83
KOG0642|consensus	577		99.83
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG1523|consensus	361		99.82
KOG0290|consensus	364		99.82
KOG0303|consensus	472		99.81
KOG2110|consensus	391		99.81
KOG1517|consensus	1387		99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
KOG0771|consensus	398		99.8
KOG0649|consensus	325		99.79
KOG4227|consensus	609		99.79
KOG1007|consensus	370		99.79
KOG0303|consensus	472		99.78
KOG1524|consensus	737		99.78
KOG2110|consensus	391		99.78
KOG0649|consensus	325		99.76
KOG1524|consensus	737		99.76
KOG1445|consensus	1012		99.75
KOG1334|consensus	559		99.75
KOG1587|consensus	555		99.75
KOG1240|consensus	1431		99.75
PRK03629	429	tolB translocation protein TolB; Provisional	99.75
KOG1272|consensus	545		99.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.74
KOG0290|consensus	364		99.73
KOG1517|consensus	1387		99.73
KOG0771|consensus	398		99.72
PRK04922	433	tolB translocation protein TolB; Provisional	99.72
KOG1310|consensus	758		99.71
KOG3881|consensus	412		99.71
KOG1272|consensus	545		99.71
KOG0644|consensus	1113		99.7
PRK02889	427	tolB translocation protein TolB; Provisional	99.7
KOG2321|consensus	703		99.69
KOG2111|consensus	346		99.69
KOG4497|consensus	447		99.69
PRK05137	435	tolB translocation protein TolB; Provisional	99.68
KOG2139|consensus	445		99.68
KOG2394|consensus	636		99.68
KOG1523|consensus	361		99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
KOG1334|consensus	559		99.67
KOG2111|consensus	346		99.66
KOG2394|consensus	636		99.65
KOG2139|consensus	445		99.64
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.62
KOG4497|consensus	447		99.6
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.59
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.59
KOG1240|consensus	1431		99.58
PRK04922	433	tolB translocation protein TolB; Provisional	99.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
PRK03629	429	tolB translocation protein TolB; Provisional	99.58
PRK05137	435	tolB translocation protein TolB; Provisional	99.57
PRK04792	448	tolB translocation protein TolB; Provisional	99.57
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
PRK01029	428	tolB translocation protein TolB; Provisional	99.55
KOG1310|consensus	758		99.54
KOG3881|consensus	412		99.54
KOG4547|consensus	541		99.54
KOG2314|consensus	698		99.5
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.49
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.45
KOG4190|consensus	1034		99.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.44
KOG0280|consensus	339		99.42
KOG0974|consensus	967		99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.41
KOG1354|consensus	433		99.41
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.41
KOG2315|consensus	566		99.41
KOG1409|consensus	404		99.4
KOG2321|consensus	703		99.39
KOG1064|consensus	2439		99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.38
KOG1354|consensus	433		99.38
KOG4547|consensus	541		99.37
KOG0280|consensus	339		99.36
PRK01029	428	tolB translocation protein TolB; Provisional	99.36
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.35
KOG0974|consensus	967		99.35
KOG2041|consensus	1189		99.32
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.32
KOG1912|consensus	1062		99.31
KOG4532|consensus	344		99.31
KOG2041|consensus	1189		99.31
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.28
KOG2314|consensus	698		99.28
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.27
KOG1409|consensus	404		99.26
KOG2315|consensus	566		99.25
KOG1064|consensus	2439		99.23
PRK04043	419	tolB translocation protein TolB; Provisional	99.21
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.2
COG4946	668	Uncharacterized protein related to the periplasmic	99.2
KOG1832|consensus	1516		99.2
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.18
KOG3914|consensus	390		99.17
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.15
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.14
KOG4532|consensus	344		99.14
KOG1912|consensus	1062		99.13
KOG0309|consensus	1081		99.11
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.11
KOG2695|consensus	425		99.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.06
KOG3914|consensus	390		99.05
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.03
KOG2114|consensus	933		99.03
KOG0309|consensus	1081		99.02
PRK04043	419	tolB translocation protein TolB; Provisional	99.01
COG4946	668	Uncharacterized protein related to the periplasmic	99.01
KOG4714|consensus	319		99.0
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.99
KOG0882|consensus	558		98.98
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.97
KOG4714|consensus	319		98.94
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.93
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.93
KOG1645|consensus	463		98.93
KOG1275|consensus	1118		98.91
KOG4190|consensus	1034		98.89
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.88
KOG2695|consensus	425		98.88
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.87
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.82
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.81
KOG0882|consensus	558		98.8
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.79
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.79
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.75
KOG2066|consensus	846		98.69
KOG1275|consensus	1118		98.66
KOG1920|consensus	1265		98.65
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.65
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.64
KOG2114|consensus	933		98.63
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.63
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.61
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.61
PRK02888	635	nitrous-oxide reductase; Validated	98.58
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.57
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.53
KOG1920|consensus	1265		98.48
KOG2066|consensus	846		98.48
KOG1832|consensus	1516		98.43
KOG3617|consensus	1416		98.41
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.38
KOG1008|consensus	783		98.38
KOG1645|consensus	463		98.37
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.37
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.35
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.33
KOG3621|consensus	726		98.32
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.31
COG3391	381	Uncharacterized conserved protein [Function unknow	98.28
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.25
PRK02888	635	nitrous-oxide reductase; Validated	98.21
KOG4649|consensus	354		98.21
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.21
KOG1008|consensus	783		98.2
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.19
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.16
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.13
KOG3621|consensus	726		98.12
COG3391	381	Uncharacterized conserved protein [Function unknow	98.1
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.09
KOG4649|consensus	354		98.04
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.03
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.03
KOG2444|consensus	238		98.01
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.01
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.01
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.99
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.98
KOG3617|consensus	1416		97.97
KOG4640|consensus	665		97.95
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.92
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.91
PRK13616	591	lipoprotein LpqB; Provisional	97.81
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.78
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.71
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.71
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.71
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.66
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.63
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.61
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.59
PHA02713	557	hypothetical protein; Provisional	97.57
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.49
KOG4640|consensus	665		97.48
PRK13616	591	lipoprotein LpqB; Provisional	97.39
KOG4499|consensus	310		97.39
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.29
KOG2395|consensus	644		97.29
KOG2079|consensus	1206		97.28
KOG2444|consensus	238		97.26
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.26
KOG4499|consensus	310		97.19
KOG4441|consensus	571		97.17
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.12
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.12
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.12
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.09
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.07
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.92
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.86
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.86
KOG4441|consensus	571		96.85
KOG2079|consensus	1206		96.82
KOG1897|consensus	1096		96.79
PHA02713	557	hypothetical protein; Provisional	96.79
KOG2395|consensus	644		96.69
PHA03098	534	kelch-like protein; Provisional	96.63
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.59
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.57
KOG3630|consensus	1405		96.48
KOG3630|consensus	1405		96.47
PHA03098	534	kelch-like protein; Provisional	96.34
KOG2280|consensus	829		96.32
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.3
PRK10115	686	protease 2; Provisional	96.25
PHA02790	480	Kelch-like protein; Provisional	96.23
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.22
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.09
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.02
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.92
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.9
KOG1916|consensus	1283		95.87
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.86
KOG1897|consensus	1096		95.74
PRK13684	334	Ycf48-like protein; Provisional	95.72
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.65
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.56
COG5276	370	Uncharacterized conserved protein [Function unknow	95.53
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.49
KOG2280|consensus	829		95.26
KOG2377|consensus	657		95.23
PHA02790	480	Kelch-like protein; Provisional	95.22
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.06
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.88
COG5167	776	VID27 Protein involved in vacuole import and degra	94.78
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.76
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.58
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.44
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.34
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.94
PRK10115	686	protease 2; Provisional	93.91
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.8
KOG1900|consensus	1311		93.65
KOG1900|consensus	1311		93.56
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.5
KOG2377|consensus	657		93.46
KOG2247|consensus	615		93.34
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.04
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.9
COG4590	733	ABC-type uncharacterized transport system, permeas	92.59
KOG2247|consensus	615		92.56
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.53
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.47
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.4
KOG4460|consensus	741		91.8
COG5167	776	VID27 Protein involved in vacuole import and degra	91.79
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.6
PLN02193	470	nitrile-specifier protein	91.5
PLN02193	470	nitrile-specifier protein	91.47
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	91.36
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.09
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.08
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.06
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.7
PLN02153	341	epithiospecifier protein	90.62
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	90.38
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.34
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.27
COG4590	733	ABC-type uncharacterized transport system, permeas	90.01
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.0
KOG1983|consensus	993		89.93
KOG1898|consensus	1205		89.74
KOG1916|consensus	1283		89.69
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.51
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	89.43
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	89.25
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.04
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	88.74
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.57
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.51
PLN00033	398	photosystem II stability/assembly factor; Provisio	88.27
PLN02153	341	epithiospecifier protein	88.26
PF14727	418	PHTB1_N: PTHB1 N-terminus	87.39
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	87.2
COG5276	370	Uncharacterized conserved protein [Function unknow	87.16
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	87.08
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.05
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.98
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	86.76
KOG3616|consensus	1636		86.64
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.52
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	86.02
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	85.96
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	85.59
COG4880	603	Secreted protein containing C-terminal beta-propel	85.46
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	84.65
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	84.07
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	83.72
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.41
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	83.31
KOG4460|consensus	741		83.29
KOG1520|consensus	376		83.18
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	82.62
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	81.9
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.03
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	80.64
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	80.28

>KOG0271|consensus

Probab=100.00  E-value=1.1e-51  Score=330.32  Aligned_cols=321  Identities=24%  Similarity=0.359  Sum_probs=264.9

Q ss_pred             ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEc
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA   97 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   97 (392)
                      +...+.+|..+|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.+++|+|||+.|++|+.||.|++||.
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            33457899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceee----eecccceeEEEEeC-----CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEE
Q psy17243         98 DNAQLL----YSALGPSKCLTVTH-----NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI  168 (392)
Q Consensus        98 ~~~~~~----~~~~~~~~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (392)
                      ++++.+    ..+...+.+++|.|     ..++|++++.||.++|||+.   .........+|..+|+|++|--++ +|+
T Consensus       187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~---~~~~~~~lsgHT~~VTCvrwGG~g-liy  262 (480)
T KOG0271|consen  187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK---LGTCVRTLSGHTASVTCVRWGGEG-LIY  262 (480)
T ss_pred             CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc---CceEEEEeccCccceEEEEEcCCc-eEE
Confidence            988664    45667889999876     67799999999999999997   555666677999999999997554 999


Q ss_pred             EeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEec-----------------------------------CCCcEEEEe
Q psy17243        169 TGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAV-----------------------------------TNKSLVVSG  213 (392)
Q Consensus       169 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-----------------------------------~~~~~l~~~  213 (392)
                      +|+.|++|++|+...|++.+.+++|...|+.++.+.                                   ..++.|++|
T Consensus       263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg  342 (480)
T KOG0271|consen  263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG  342 (480)
T ss_pred             ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence            999999999999999999999999999999998871                                   123469999


Q ss_pred             cCCCeEEEEECCC-CceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcce
Q psy17243        214 SKDSNLIVWDMET-GGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTS  292 (392)
Q Consensus       214 ~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (392)
                      +.|.++.+|+-.. .+++..+.+|...|+.+.||||++++++++.++....                   |....|....
T Consensus       343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkL-------------------W~g~tGk~la  403 (480)
T KOG0271|consen  343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKL-------------------WDGRTGKFLA  403 (480)
T ss_pred             cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceee-------------------eeCCCcchhh
Confidence            9999999999764 4578899999999999999999999999765433322                   2222221111


Q ss_pred             eEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccc-cccCc
Q psy17243        293 SIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMS-KQNSY  371 (392)
Q Consensus       293 ~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~-~~~~~  371 (392)
                      .+..                        +-..+-.++||.|.++|+ +++.|.++++||+++.+.    ...++ +...+
T Consensus       404 sfRG------------------------Hv~~VYqvawsaDsRLlV-S~SkDsTLKvw~V~tkKl----~~DLpGh~DEV  454 (480)
T KOG0271|consen  404 SFRG------------------------HVAAVYQVAWSADSRLLV-SGSKDSTLKVWDVRTKKL----KQDLPGHADEV  454 (480)
T ss_pred             hhhh------------------------ccceeEEEEeccCccEEE-EcCCCceEEEEEeeeeee----cccCCCCCceE
Confidence            0000                        000011127899999988 999999999999988665    34455 55668


Q ss_pred             cccccccCccCCCCccccc
Q psy17243        372 SSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       372 ~~~~fspdg~~l~~~~~d~  390 (392)
                      ..+.|||||+.+++|..|.
T Consensus       455 f~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  455 FAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             EEEEecCCCceeecCCCce
Confidence            8899999999999998875

>KOG0271|consensus

Probab=100.00  E-value=9.9e-49  Score=313.43  Aligned_cols=253  Identities=25%  Similarity=0.419  Sum_probs=225.4

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCcee-EEecccccceEEEEEec-
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV-STFKSHQSTILAVAVLS-   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~-   78 (392)
                      ||+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||.++|+++ ..+.+|...|++++|.| 
T Consensus       132 tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~  211 (480)
T KOG0271|consen  132 TGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPL  211 (480)
T ss_pred             ecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeeccc
Confidence            6899999999999999999999999999999999999999999999999999999998775 57899999999999976 


Q ss_pred             ----CCCEEEEEeCCCeEEEEEcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecc
Q psy17243         79 ----DSRRVVTSDKAGVIAVWVADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH  151 (392)
Q Consensus        79 ----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  151 (392)
                          ..++|++++.||.++|||+..+.++..+.+   +++|+.|--++ ++++|+.|++|++|+...+   ...+...+|
T Consensus       212 hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG---~~~r~lkGH  287 (480)
T KOG0271|consen  212 HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG---KLCRELKGH  287 (480)
T ss_pred             ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccch---hHHHhhccc
Confidence                567999999999999999999988776554   77888887554 8999999999999998743   334445588


Q ss_pred             ccceEEEEEE-----------cC-------------------------CCEEEEeeCCCcEEEEEcCCC-eEEEEEecCC
Q psy17243        152 SEEITCFTVT-----------WD-------------------------SQYLITGSRDMSLKVWQVVGG-KLAQVLVGHT  194 (392)
Q Consensus       152 ~~~v~~~~~~-----------~~-------------------------~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~  194 (392)
                      ...|+.++++           |.                         +..|++|+.|.++.+|+.... +++..+.+|.
T Consensus       288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq  367 (480)
T KOG0271|consen  288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQ  367 (480)
T ss_pred             chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchh
Confidence            8999988877           22                         235999999999999998654 5888899999


Q ss_pred             CceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        195 DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       195 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      .-|+.+.|+ |++.++++++.|..|++||.++|+.+..+.+|-+.|..++|+.|.+++++++++
T Consensus       368 ~lVn~V~fS-Pd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD  430 (480)
T KOG0271|consen  368 ALVNHVSFS-PDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD  430 (480)
T ss_pred             hheeeEEEC-CCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC
Confidence            999999999 889999999999999999999999999999999999999999999999887644

>KOG0272|consensus

Probab=100.00  E-value=1.5e-46  Score=304.54  Aligned_cols=258  Identities=21%  Similarity=0.297  Sum_probs=241.5

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCC--CCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEec
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPN--SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~   78 (392)
                      ||+.+|.++||+..+...+.+|.+|...|.++.|+|.  +..||+|+.||++++|++++..++..+.+|...|..++|+|
T Consensus       192 T~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP  271 (459)
T KOG0272|consen  192 TGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP  271 (459)
T ss_pred             EeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecC
Confidence            6899999999999999999999999999999999996  56899999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         79 DSRRVVTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        79 ~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      +|++|.+++.|.+-++||++++..+..   +...+.+++|+++|..+++|+.|..-+|||++++   ..+.+..+|..+|
T Consensus       272 sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg---r~im~L~gH~k~I  348 (459)
T KOG0272|consen  272 SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG---RCIMFLAGHIKEI  348 (459)
T ss_pred             CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccC---cEEEEecccccce
Confidence            999999999999999999999987654   4457789999999999999999999999999954   4455666899999


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      .+++|+|+|..|++|+.|++++|||++..+.+..+.+|.+-|+.+.|+|..+.+|++++.|++++||.-.+.+++..+.+
T Consensus       349 ~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG  428 (459)
T KOG0272|consen  349 LSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG  428 (459)
T ss_pred             eeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence            99999999999999999999999999999999999999999999999987999999999999999999999999999999


Q ss_pred             cccceeEEEEcCCCeEEEEcCCCCCC
Q psy17243        236 HLGCVTCVKLAGDGTVAMSDLPPSRP  261 (392)
Q Consensus       236 ~~~~v~~~~~~~dg~~~~~~~~~~~~  261 (392)
                      |.+.|.++.+++|+..+++...+...
T Consensus       429 He~kV~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  429 HEGKVISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             CccceEEEEeccCCceEEEeccCcee
Confidence            99999999999999999998765443

>KOG0272|consensus

Probab=100.00  E-value=4.4e-46  Score=301.78  Aligned_cols=232  Identities=22%  Similarity=0.336  Sum_probs=214.9

Q ss_pred             cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC--CCEEEEEeCCCeEEEEEcCCce
Q psy17243         24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD--SRRVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~  101 (392)
                      +.+.+|..+.|+++++.|+|||.+|.+++|+..+...++++.+|...|.++.|+|.  +..+++++.||++++|++++..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            56789999999999999999999999999999999999999999999999999997  5689999999999999999988


Q ss_pred             eeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEE
Q psy17243        102 LLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV  178 (392)
Q Consensus       102 ~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  178 (392)
                      .+..+.+   .+..++|+|+|++|++++.|.+-++||++   ...+.....+|...|.+++|.+||.++++|+.|..-+|
T Consensus       253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~---tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE---TKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV  329 (459)
T ss_pred             chhhhhcchhhheeeeecCCCceeeecccccchhhcccc---cchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence            8776665   57789999999999999999999999998   44555566799999999999999999999999999999


Q ss_pred             EEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcC-CCeEEEEcCC
Q psy17243        179 WQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAG-DGTVAMSDLP  257 (392)
Q Consensus       179 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-dg~~~~~~~~  257 (392)
                      ||+++++++..+.+|..+|..++|+ |++..|++|+.|++++|||++..+++..+++|.+-|+.+.|+| .|.+++++..
T Consensus       330 WDlRtgr~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy  408 (459)
T KOG0272|consen  330 WDLRTGRCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY  408 (459)
T ss_pred             eecccCcEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence            9999999999999999999999999 8999999999999999999999999999999999999999998 6777777654


Q ss_pred             CC
Q psy17243        258 PS  259 (392)
Q Consensus       258 ~~  259 (392)
                      +.
T Consensus       409 D~  410 (459)
T KOG0272|consen  409 DN  410 (459)
T ss_pred             Cc
Confidence            43

>KOG0286|consensus

Probab=100.00  E-value=1.5e-40  Score=257.66  Aligned_cols=238  Identities=19%  Similarity=0.315  Sum_probs=211.2

Q ss_pred             cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        17 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      +..++|++|.++|.++.|++|.++|+++|.||.+.|||.-+....+.++.....|..++|+|.++++++|+-|+...||+
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            34578999999999999999999999999999999999999999999988889999999999999999999999999999


Q ss_pred             cCCc------e---eeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc-CCCE
Q psy17243         97 ADNA------Q---LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW-DSQY  166 (392)
Q Consensus        97 ~~~~------~---~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  166 (392)
                      +.+.      +   .+..+.+...|..|.+ ...|++++.|.+..+||++++   +....+.+|.+.|.+++++| +++.
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCCe
Confidence            9854      1   2334455667888877 668999999999999999854   44455669999999999999 8999


Q ss_pred             EEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc--cccceeEEE
Q psy17243        167 LITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG--HLGCVTCVK  244 (392)
Q Consensus       167 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~  244 (392)
                      +++|+.|+..++||++.+.+++.|.+|...|++++|. |++.-+++|+.|++.++||++..+.+..+..  -..+|++++
T Consensus       202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~  280 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA  280 (343)
T ss_pred             EEecccccceeeeeccCcceeEeecccccccceEEEc-cCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE
Confidence            9999999999999999999999999999999999999 7888899999999999999999998887763  234899999


Q ss_pred             EcCCCeEEEEcCCCC
Q psy17243        245 LAGDGTVAMSDLPPS  259 (392)
Q Consensus       245 ~~~dg~~~~~~~~~~  259 (392)
                      ||..|+++..+..+.
T Consensus       281 FS~SGRlLfagy~d~  295 (343)
T KOG0286|consen  281 FSKSGRLLFAGYDDF  295 (343)
T ss_pred             EcccccEEEeeecCC
Confidence            999999999986543

>KOG0279|consensus

Probab=100.00  E-value=7.5e-40  Score=252.16  Aligned_cols=253  Identities=22%  Similarity=0.338  Sum_probs=219.0

Q ss_pred             CCccCCeEEEEECC-----CccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEE
Q psy17243          1 MGGMDCLVNVWQMN-----SHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVA   75 (392)
Q Consensus         1 tg~~dg~i~vwd~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~   75 (392)
                      +++.|..+.+|++.     .|..++.+++|...|..+..+++|++.++++.|+++++||+.+++..+.|.+|...|.+++
T Consensus        33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva  112 (315)
T KOG0279|consen   33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVA  112 (315)
T ss_pred             EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEE
Confidence            47889999999984     4777899999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCceeeeec----ccceeEEEEeCC--CCEEEEecCCCcEEEEeCCCCCCCCcceeee
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQLLYSA----LGPSKCLTVTHN--MKYIVSGDGDNSLRIWPTSPQTHKDDERFTV  149 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  149 (392)
                      |++|.+.+++|+.|.+|++|+..........    ..-+.|+.|+|+  ..+|++++.|+.|++||++   ..+......
T Consensus       113 ~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~---~~~l~~~~~  189 (315)
T KOG0279|consen  113 FSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR---NCQLRTTFI  189 (315)
T ss_pred             ecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC---Ccchhhccc
Confidence            9999999999999999999999876554332    345889999998  7899999999999999998   444444566


Q ss_pred             ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      +|.+.++.++++|||.++++|+.||.+.+||++.++.+..+. |...|.+++|+ |+...|+.+ .+..|+|||+.++..
T Consensus       190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fs-pnrywL~~a-t~~sIkIwdl~~~~~  266 (315)
T KOG0279|consen  190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFS-PNRYWLCAA-TATSIKIWDLESKAV  266 (315)
T ss_pred             cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEec-CCceeEeec-cCCceEEEeccchhh
Confidence            899999999999999999999999999999999999988776 78999999999 566555544 566799999999888


Q ss_pred             eeeecc----c-----ccceeEEEEcCCCeEEEEcCCCC
Q psy17243        230 EHFLAG----H-----LGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       230 ~~~~~~----~-----~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      +..+..    .     .....+++|++||..+..+..+.
T Consensus       267 v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~  305 (315)
T KOG0279|consen  267 VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN  305 (315)
T ss_pred             hhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence            765542    1     22456889999999999987543

>KOG0279|consensus

Probab=100.00  E-value=2.3e-40  Score=255.01  Aligned_cols=237  Identities=25%  Similarity=0.413  Sum_probs=209.4

Q ss_pred             ccceeeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCC-----CCceeEEecccccceEEEEEecCCCEEEEEeCC
Q psy17243         16 HELQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLT-----LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA   89 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   89 (392)
                      ..+..++++|++.|+.++..+. ...+++++.|.++.+|++.     .|..++.+.+|...|..+..++++++.++++.|
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            3456678999999999999986 5688999999999999874     567789999999999999999999999999999


Q ss_pred             CeEEEEEcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeec-cccceEEEEEEcC--
Q psy17243         90 GVIAVWVADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS-HSEEITCFTVTWD--  163 (392)
Q Consensus        90 ~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--  163 (392)
                      +++++||+.+++..+.+.+   .+.+++++++.+++++|+.|.+|++|+....   ........ +...|.|++|+|+  
T Consensus        85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~---ck~t~~~~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV---CKYTIHEDSHREWVSCVRFSPNES  161 (315)
T ss_pred             ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc---EEEEEecCCCcCcEEEEEEcCCCC
Confidence            9999999999977666554   5789999999999999999999999998622   22222222 3789999999998  


Q ss_pred             CCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEE
Q psy17243        164 SQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCV  243 (392)
Q Consensus       164 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  243 (392)
                      ..+|++++.|+++++||+++.+....+.+|.+.++.++++ +++.++++|+.||.+.+||++.++.++.+. |...|.++
T Consensus       162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl  239 (315)
T KOG0279|consen  162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSL  239 (315)
T ss_pred             CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeE
Confidence            6799999999999999999999999999999999999999 889999999999999999999999988775 78999999


Q ss_pred             EEcCCCeEEEEcCC
Q psy17243        244 KLAGDGTVAMSDLP  257 (392)
Q Consensus       244 ~~~~dg~~~~~~~~  257 (392)
                      +|+|+...++.+..
T Consensus       240 ~fspnrywL~~at~  253 (315)
T KOG0279|consen  240 CFSPNRYWLCAATA  253 (315)
T ss_pred             EecCCceeEeeccC
Confidence            99999888877653

>KOG0315|consensus

Probab=100.00  E-value=3.5e-39  Score=244.51  Aligned_cols=263  Identities=18%  Similarity=0.319  Sum_probs=231.8

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc--eeEEecccccceEEEEEec
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~   78 (392)
                      |++.|.+|++|...+|.+.++++...+.|+.+...|+++.||+++. ..|++||+++++  ++.++.+|...|+++.|..
T Consensus        15 sA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~   93 (311)
T KOG0315|consen   15 SAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC   93 (311)
T ss_pred             eccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEee
Confidence            5789999999999999999999977889999999999999998874 689999998875  5889999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceee--eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         79 DSRRVVTSDKAGVIAVWVADNAQLL--YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        79 ~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      +|+.+++|++||+++|||++...+.  ..+..+++++..+|+...|++|..+|.|++||+.......+  ........|.
T Consensus        94 dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~--liPe~~~~i~  171 (311)
T KOG0315|consen   94 DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE--LIPEDDTSIQ  171 (311)
T ss_pred             cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc--cCCCCCccee
Confidence            9999999999999999999987654  45567999999999999999999999999999986533332  2234557899


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCC------eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC-ce
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGG------KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG-GE  229 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~  229 (392)
                      ++...|||.+|+.+...|+.++|++-+.      +++.+++.|...+..+.++ ++.++|++++.|.+++||+.++. +.
T Consensus       172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS-Pd~k~lat~ssdktv~iwn~~~~~kl  250 (311)
T KOG0315|consen  172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS-PDVKYLATCSSDKTVKIWNTDDFFKL  250 (311)
T ss_pred             eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC-CCCcEEEeecCCceEEEEecCCceee
Confidence            9999999999999999999999998654      4677889999999999999 78999999999999999999987 66


Q ss_pred             eeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCc
Q psy17243        230 EHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRP  267 (392)
Q Consensus       230 ~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~  267 (392)
                      ...+.+|...+..++||.||++++++..+.....+..+
T Consensus       251 e~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  251 ELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             EEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            67889999999999999999999999877655544433

>KOG0286|consensus

Probab=100.00  E-value=2.2e-38  Score=245.66  Aligned_cols=251  Identities=20%  Similarity=0.291  Sum_probs=228.8

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC------ceeEEecccccceEEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG------SVVSTFKSHQSTILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~   74 (392)
                      +++.||.+.|||.-+..+.+.+.-....|..++|+|.|+++|+|+-|+...||++.+.      +..+++.+|.+.+.++
T Consensus        72 SaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC  151 (343)
T KOG0286|consen   72 SASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCC  151 (343)
T ss_pred             eeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEE
Confidence            5789999999999998889999888999999999999999999999999999999855      4556789999999999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc---ceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeec
Q psy17243         75 AVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG---PSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS  150 (392)
Q Consensus        75 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  150 (392)
                      .|.+ ...|++++.|.+..+||+++++.+..+.+   .+.++.++| +++.+++|+.|+..++||++.+   .....+.+
T Consensus       152 ~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---~c~qtF~g  227 (343)
T KOG0286|consen  152 RFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---QCVQTFEG  227 (343)
T ss_pred             EEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---ceeEeecc
Confidence            9987 56899999999999999999999887665   678899999 9999999999999999999954   55566779


Q ss_pred             cccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec--CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG--HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      |...|++++|.|+|.-+++|+.|++.++||++..+.+..+..  ...+|++++|+ ..+++|++|..|.++.+||.-.++
T Consensus       228 hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  228 HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS-KSGRLLFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc-ccccEEEeeecCCceeEeeccccc
Confidence            999999999999999999999999999999999998888763  23579999999 889999999999999999999999


Q ss_pred             eeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        229 EEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       229 ~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .+..+.+|.+.|.++..+|||..+++++
T Consensus       307 ~vg~L~GHeNRvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  307 RVGVLAGHENRVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             eEEEeeccCCeeEEEEECCCCcEEEecc
Confidence            9999999999999999999999988875

>KOG0318|consensus

Probab=100.00  E-value=6.4e-39  Score=267.18  Aligned_cols=361  Identities=16%  Similarity=0.181  Sum_probs=279.1

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec---ccccceEEEEEe
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK---SHQSTILAVAVL   77 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~   77 (392)
                      ||++|+.|.+|+-...+...++..|..-|.|+.|+|||.++++++.||++.+||-.+++.+..+.   +|++.|.++.|+
T Consensus       165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs  244 (603)
T KOG0318|consen  165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS  244 (603)
T ss_pred             eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC
Confidence            68999999999999999999999999999999999999999999999999999999999999998   899999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCceeeeeccccee------EEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecc
Q psy17243         78 SDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK------CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH  151 (392)
Q Consensus        78 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  151 (392)
                      ||++++++++.|.+++|||+.+.+++.++.....      .+.|.  ...|++.+.+|.|.+++.....   ......+|
T Consensus       245 PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~---~~~~i~GH  319 (603)
T KOG0318|consen  245 PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS---VLKVISGH  319 (603)
T ss_pred             CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC---hhheeccc
Confidence            9999999999999999999999988877654221      22233  6689999999999999987443   55666799


Q ss_pred             ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEE-ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL-VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      ...|+++..++++++|++|+.||.|.-|+..++..-+.. .+|...|.+++.+  ....+++.+.|.++++.++.....-
T Consensus       320 nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~~~~t  397 (603)
T KOG0318|consen  320 NKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKDNGYT  397 (603)
T ss_pred             ccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec--CCCcEEEEecCCeEEEEecccCccc
Confidence            999999999999999999999999999999988765544 6799999999887  3345677889999999998654332


Q ss_pred             ee--ecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEE
Q psy17243        231 HF--LAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFS  308 (392)
Q Consensus       231 ~~--~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (392)
                      ..  ++-..++. +++..+|+.+++......-.         ++..         ....-..+-.+........+++.++
T Consensus       398 ~~~~~~lg~QP~-~lav~~d~~~avv~~~~~iv---------~l~~---------~~~~~~~~~~y~~s~vAv~~~~~~v  458 (603)
T KOG0318|consen  398 KSEVVKLGSQPK-GLAVLSDGGTAVVACISDIV---------LLQD---------QTKVSSIPIGYESSAVAVSPDGSEV  458 (603)
T ss_pred             ccceeecCCCce-eEEEcCCCCEEEEEecCcEE---------EEec---------CCcceeeccccccceEEEcCCCCEE
Confidence            21  22222333 78888886554443321100         0000         0000011111222233445667788


Q ss_pred             EeeccccceecceeccC------------CCC---CCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccc
Q psy17243        309 VSASMEEISKIPIKDNV------------GSQ---GLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSS  373 (392)
Q Consensus       309 ~s~s~d~~~~~~~~~~~------------~~~---~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~  373 (392)
                      +.|+.|+.+.+......            +.+   ++|||+.||| ++...+.+-+||+.+.+.  ......-+..++..
T Consensus       459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla-~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~  535 (603)
T KOG0318|consen  459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA-AGDASRKVVLYDVASREV--KTNRWAFHTAKINC  535 (603)
T ss_pred             EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE-EeccCCcEEEEEcccCce--ecceeeeeeeeEEE
Confidence            88888887777644321            222   9999999999 878889999999988766  22455557788999


Q ss_pred             cccccCccCCCCccccc
Q psy17243        374 RQHSVDTDELSSPVDEF  390 (392)
Q Consensus       374 ~~fspdg~~l~~~~~d~  390 (392)
                      ++|||+.+.+|||+-|.
T Consensus       536 ~aWsP~n~~vATGSlDt  552 (603)
T KOG0318|consen  536 VAWSPNNKLVATGSLDT  552 (603)
T ss_pred             EEeCCCceEEEeccccc
Confidence            99999999999999775

>KOG0295|consensus

Probab=100.00  E-value=3.4e-39  Score=257.21  Aligned_cols=252  Identities=22%  Similarity=0.390  Sum_probs=229.5

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC-CceeEEecccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL-GSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      +++.|++|++||..++++...+++|.+.|..++|+..|++|++++.|-.+++||.++ .++++.+.+|+..|.+++|.|.
T Consensus       125 ~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~  204 (406)
T KOG0295|consen  125 SASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL  204 (406)
T ss_pred             EecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec
Confidence            357899999999999999999999999999999999999999999999999999987 6778888999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeecccc---eeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYSALGP---SKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      |.++++++.|.+|+.|++.++.+++.+.++   +..+..+.||..+++++.|.+|++|-+.+.+.+.   ....|+.+|.
T Consensus       205 gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~---~lR~hEh~vE  281 (406)
T KOG0295|consen  205 GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA---ELREHEHPVE  281 (406)
T ss_pred             CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhh---hhhccccceE
Confidence            999999999999999999999999988775   5678889999999999999999999987543333   3447899999


Q ss_pred             EEEEEcC---------------CCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEE
Q psy17243        157 CFTVTWD---------------SQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV  221 (392)
Q Consensus       157 ~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  221 (392)
                      |++|.|.               +.++.+++.|++|++||+.++.++.++.+|...|..++|+ ++|++|+++..|+++++
T Consensus       282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~-p~Gkyi~ScaDDktlrv  360 (406)
T KOG0295|consen  282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS-PGGKYILSCADDKTLRV  360 (406)
T ss_pred             EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEc-CCCeEEEEEecCCcEEE
Confidence            9999771               2589999999999999999999999999999999999999 88999999999999999


Q ss_pred             EECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        222 WDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       222 wd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ||+++++++..+..|..-++++.|+.+..+++++.
T Consensus       361 wdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGs  395 (406)
T KOG0295|consen  361 WDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGS  395 (406)
T ss_pred             EEeccceeeeccCCCcceeEEEecCCCCceEEecc
Confidence            99999999999999999999999998766666653

>KOG0291|consensus

Probab=100.00  E-value=5.4e-38  Score=272.20  Aligned_cols=366  Identities=18%  Similarity=0.251  Sum_probs=293.8

Q ss_pred             CCccCCeEEEEECCCccc--eeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC---------------------
Q psy17243          1 MGGMDCLVNVWQMNSHEL--QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL---------------------   57 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------------------   57 (392)
                      +|+.|-.+++|.++..+.  ...+.+|++.|.++-|..+..-+++.+.||.+.+|....                     
T Consensus       162 ~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~  241 (893)
T KOG0291|consen  162 TGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD  241 (893)
T ss_pred             eccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence            589999999999987666  566889999999999999999999999999999997651                     


Q ss_pred             --Cce-----------eEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc---cceeEEEEeCCCCE
Q psy17243         58 --GSV-----------VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKY  121 (392)
Q Consensus        58 --~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~  121 (392)
                        ++.           ..-+......|++.+|++..+.|+++-..|...+|.+....+++.+.   .++..+.++..|.+
T Consensus       242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDW  321 (893)
T KOG0291|consen  242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDW  321 (893)
T ss_pred             ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCE
Confidence              111           01112233679999999999999999999999999999998887654   57889999999999


Q ss_pred             EEEecCC-CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEE
Q psy17243        122 IVSGDGD-NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV  200 (392)
Q Consensus       122 l~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~  200 (392)
                      ++.|+.. |.+.+|+..+   ........+|...+++++++|||+++++|++||.|+|||..++-+..++..|+..|+.+
T Consensus       322 iA~g~~klgQLlVweWqs---EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v  398 (893)
T KOG0291|consen  322 IAFGCSKLGQLLVWEWQS---ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAV  398 (893)
T ss_pred             EEEcCCccceEEEEEeec---cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEE
Confidence            9999875 8999999873   33334455899999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccc-ceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccc
Q psy17243        201 AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG-CVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLD  279 (392)
Q Consensus       201 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (392)
                      .|+ ..++.+++.+.||+|+.||+...+..+++..... ...+++..|.|.++..+..+                  ...
T Consensus       399 ~f~-~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d------------------~F~  459 (893)
T KOG0291|consen  399 QFT-ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQD------------------SFE  459 (893)
T ss_pred             EEE-ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccc------------------eEE
Confidence            999 8899999999999999999999999888875433 57788999999998887532                  344


Q ss_pred             eeEEEeccCCcceeEEEeec-----ccccceeEEEeeccccceecceeccC-CC------------CCCChhhhhhhccc
Q psy17243        280 TYTWQRKYGHLTSSIMMAAV-----DERLKRRFSVSASMEEISKIPIKDNV-GS------------QGLGPEQAALAQSQ  341 (392)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~s~d~~~~~~~~~~~-~~------------~~~s~dg~~la~s~  341 (392)
                      .+.|..+.|++..++.....     ...+.+..++++|.|.++++|..-.. +.            ++|+|||+.|| .+
T Consensus       460 IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ela-Va  538 (893)
T KOG0291|consen  460 IFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELA-VA  538 (893)
T ss_pred             EEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEE-EE
Confidence            67787777766655554321     23456779999999999999975322 11            19999999999 78


Q ss_pred             ChHHHHHHhhCCCCCCc-----------cc------cccccccccCccccccccCccCCCCcccc
Q psy17243        342 HFDQLEALWNKKSPPRS-----------RR------FEHSMSKQNSYSSRQHSVDTDELSSPVDE  389 (392)
Q Consensus       342 ~~d~~i~~Wd~~~~~~~-----------~~------~~~~~~~~~~~~~~~fspdg~~l~~~~~d  389 (392)
                      .-||.|.+||+......           .+      ....-.....++++++|+||++|++|+.-
T Consensus       539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~s  603 (893)
T KOG0291|consen  539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGES  603 (893)
T ss_pred             EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCc
Confidence            99999999998654331           01      01111122346779999999999887654

>KOG0315|consensus

Probab=100.00  E-value=1.3e-37  Score=236.00  Aligned_cols=242  Identities=25%  Similarity=0.400  Sum_probs=215.0

Q ss_pred             ccCCeEEEEECCCcc--ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          3 GMDCLVNVWQMNSHE--LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +..-.|++||+.+++  ++.++.+|+..|+++.|..+|+++++|+.||+++|||++...+.+.++ |..+|+++..+|+.
T Consensus        58 a~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ  136 (311)
T KOG0315|consen   58 AGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ  136 (311)
T ss_pred             ccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc
Confidence            455689999998754  588899999999999999999999999999999999999977777777 78999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeee----ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCC---Ccceeeecccc
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLY----SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHK---DDERFTVSHSE  153 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~  153 (392)
                      ..|+++..+|.|++||+.+..+..    +...++.++.+.|+|.+++.+...|..++|++-.....   ........|..
T Consensus       137 teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~  216 (311)
T KOG0315|consen  137 TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG  216 (311)
T ss_pred             ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence            999999999999999999875543    34457899999999999999999999999998764332   22334557999


Q ss_pred             ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeee
Q psy17243        154 EITCFTVTWDSQYLITGSRDMSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF  232 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  232 (392)
                      .+..+.++||+++|++++.|.+++||+..+. +....+.+|...+...+|+ .++.+|++|+.|+.+++|++..++.+..
T Consensus       217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS-~dg~YlvTassd~~~rlW~~~~~k~v~q  295 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS-ADGEYLVTASSDHTARLWDLSAGKEVRQ  295 (311)
T ss_pred             eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec-cCccEEEecCCCCceeecccccCceeee
Confidence            9999999999999999999999999999888 6667789999999999999 8999999999999999999999999999


Q ss_pred             ecccccceeEEEEc
Q psy17243        233 LAGHLGCVTCVKLA  246 (392)
Q Consensus       233 ~~~~~~~v~~~~~~  246 (392)
                      ..+|.....|++..
T Consensus       296 y~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  296 YQGHHKAAVCVALN  309 (311)
T ss_pred             cCCcccccEEEEee
Confidence            99999888887764

>KOG0319|consensus

Probab=100.00  E-value=1.6e-38  Score=274.85  Aligned_cols=372  Identities=19%  Similarity=0.253  Sum_probs=297.3

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCC--eEEEEeCCCeEEEEeCCCCce-eEEecccccceEEEEEe
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSI--FAVSGSEDNTAKVWGLTLGSV-VSTFKSHQSTILAVAVL   77 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~   77 (392)
                      +|+.||.|+|||+..+...+.|++|.+.|.++.|+|+-.  .|++|..|+++++||+++... +..+..|.+.|++++|.
T Consensus       122 tggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~  201 (775)
T KOG0319|consen  122 TGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFS  201 (775)
T ss_pred             eccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeec
Confidence            689999999999999999999999999999999999654  589999999999999996654 78888999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCceeeeecc--cceeEEEEeCC-----CCEEEEecCCCcEEEEeCCCCCCCCcceeeec
Q psy17243         78 SDSRRVVTSDKAGVIAVWVADNAQLLYSAL--GPSKCLTVTHN-----MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS  150 (392)
Q Consensus        78 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  150 (392)
                      +++..+++++.|..+.+||+.+.+.+...+  ..+.++.+-++     +.++++++.+|.+++||.++........... 
T Consensus       202 ~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-  280 (775)
T KOG0319|consen  202 EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-  280 (775)
T ss_pred             cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-
Confidence            999999999999999999997776655443  34556666665     6799999999999999998765443333221 


Q ss_pred             cccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                       ...+..+...+....++....|..+.+||.++.++.+.+.+..+.|..++|--+..++|+.++..+.+++|++.+..+.
T Consensus       281 -~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~  359 (775)
T KOG0319|consen  281 -SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ  359 (775)
T ss_pred             -chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE
Confidence             2225555555555667777778999999999999999999999999999998788899999999999999999877765


Q ss_pred             eeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEe
Q psy17243        231 HFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVS  310 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  310 (392)
                       .+.+|...|.++....+|-+++++.++.....     |++-....  .........||...+..+..  ......++++
T Consensus       360 -ii~GH~e~vlSL~~~~~g~llat~sKD~svil-----Wr~~~~~~--~~~~~a~~~gH~~svgava~--~~~~asffvs  429 (775)
T KOG0319|consen  360 -IIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL-----WRLNNNCS--KSLCVAQANGHTNSVGAVAG--SKLGASFFVS  429 (775)
T ss_pred             -EEeCchhheeeeeecccCcEEEEecCCceEEE-----EEecCCcc--hhhhhhhhcccccccceeee--cccCccEEEE
Confidence             88999999999997778889999886654433     33311111  11112234477776666665  3444578999


Q ss_pred             eccccceecceecc----------------------CCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccc
Q psy17243        311 ASMEEISKIPIKDN----------------------VGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQ  368 (392)
Q Consensus       311 ~s~d~~~~~~~~~~----------------------~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~  368 (392)
                      +|.|.++++|..+.                      .+.++.+|+.+++| ||+.|++.+||++.+...    ...++++
T Consensus       430 vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA-T~SqDktaKiW~le~~~l----~~vLsGH  504 (775)
T KOG0319|consen  430 VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA-TGSQDKTAKIWDLEQLRL----LGVLSGH  504 (775)
T ss_pred             ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE-ecccccceeeecccCceE----EEEeeCC
Confidence            99999999998764                      12228899999999 999999999999984333    5666666


Q ss_pred             cC-ccccccccCccCCCCcccc
Q psy17243        369 NS-YSSRQHSVDTDELSSPVDE  389 (392)
Q Consensus       369 ~~-~~~~~fspdg~~l~~~~~d  389 (392)
                      .+ +-++.|||..+.|||.+.|
T Consensus       505 ~RGvw~V~Fs~~dq~laT~SgD  526 (775)
T KOG0319|consen  505 TRGVWCVSFSKNDQLLATCSGD  526 (775)
T ss_pred             ccceEEEEeccccceeEeccCC
Confidence            66 6669999999999988876

>KOG0318|consensus

Probab=100.00  E-value=4.5e-37  Score=256.23  Aligned_cols=349  Identities=17%  Similarity=0.241  Sum_probs=247.8

Q ss_pred             eccCCcCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCc
Q psy17243         22 MEGHLNTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA  100 (392)
Q Consensus        22 ~~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  100 (392)
                      +.+|...|++++|-|... ++++|+.|++|.+|+-...+...++..|..-|.++.|+|||+++++++.||++.+||-.++
T Consensus       143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg  222 (603)
T KOG0318|consen  143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG  222 (603)
T ss_pred             eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence            345666666666666443 4666666666666665555666677789999999999999999999999999999999999


Q ss_pred             eeeeecc------cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCC
Q psy17243        101 QLLYSAL------GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM  174 (392)
Q Consensus       101 ~~~~~~~------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  174 (392)
                      +.+..+.      +.+..++|+||+..+++++.|.++++||+.+............-...-..+-|.  +..|++.+.+|
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G  300 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSG  300 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCc
Confidence            9887654      578899999999999999999999999998664333322221112333333454  66899999999


Q ss_pred             cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee-cccccceeEEEEcCCCeEEE
Q psy17243        175 SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL-AGHLGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~dg~~~~  253 (392)
                      +|.+++...+.+++.+.+|...|+++..+ +++.+|++|+.||.|.-|+..++..-... .+|...|.+++-+..+.++.
T Consensus       301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~-~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t  379 (603)
T KOG0318|consen  301 TINYLNPSDPSVLKVISGHNKSITALTVS-PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT  379 (603)
T ss_pred             EEEEecccCCChhheecccccceeEEEEc-CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence            99999999999999999999999999999 67799999999999999999988765544 67999999999998888877


Q ss_pred             EcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeecccc---------ceecceecc
Q psy17243        254 SDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEE---------ISKIPIKDN  324 (392)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~---------~~~~~~~~~  324 (392)
                      .+.++.        ++............. ....++.|..+....-     +..++.+..++         ...++..-.
T Consensus       380 ~g~Dd~--------l~~~~~~~~~~t~~~-~~~lg~QP~~lav~~d-----~~~avv~~~~~iv~l~~~~~~~~~~~~y~  445 (603)
T KOG0318|consen  380 IGWDDT--------LRVISLKDNGYTKSE-VVKLGSQPKGLAVLSD-----GGTAVVACISDIVLLQDQTKVSSIPIGYE  445 (603)
T ss_pred             EecCCe--------EEEEecccCcccccc-eeecCCCceeEEEcCC-----CCEEEEEecCcEEEEecCCcceeeccccc
Confidence            766441        111111100000000 1123444443222211     11112222222         122221111


Q ss_pred             CCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCcccc
Q psy17243        325 VGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDE  389 (392)
Q Consensus       325 ~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d  389 (392)
                      ....+++|++.+.| .|+.|+.|+||.+........ ...+.+...++.++|||||.+||++|-.
T Consensus       446 ~s~vAv~~~~~~va-VGG~Dgkvhvysl~g~~l~ee-~~~~~h~a~iT~vaySpd~~yla~~Da~  508 (603)
T KOG0318|consen  446 SSAVAVSPDGSEVA-VGGQDGKVHVYSLSGDELKEE-AKLLEHRAAITDVAYSPDGAYLAAGDAS  508 (603)
T ss_pred             cceEEEcCCCCEEE-EecccceEEEEEecCCcccce-eeeecccCCceEEEECCCCcEEEEeccC
Confidence            22339999999998 899999999999988665222 3455567778889999999999988754

>KOG0284|consensus

Probab=100.00  E-value=3e-39  Score=261.09  Aligned_cols=261  Identities=19%  Similarity=0.268  Sum_probs=229.5

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccc-ccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH-QSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~   79 (392)
                      ||+..|.+.+|+..+......++.|..+|+++.|++++.++++|+.+|.|++|+..-. .++.++.| ...|.+++|+|+
T Consensus       113 tgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpn  191 (464)
T KOG0284|consen  113 TGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPN  191 (464)
T ss_pred             eecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCC
Confidence            6889999999999887777778899999999999999999999999999999996644 34444444 489999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      ...+++++.||+|+|||....+.-..   +.-.++++.|+|....+++++.|..|++||.+++..   +.....|...|.
T Consensus       192 DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c---l~tlh~HKntVl  268 (464)
T KOG0284|consen  192 DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC---LATLHGHKNTVL  268 (464)
T ss_pred             CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcch---hhhhhhccceEE
Confidence            99999999999999999987765443   344689999999999999999999999999985544   444557999999


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee-cc
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL-AG  235 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~  235 (392)
                      .+.|++++++|++++.|..+++||+++.+.+..+++|+..++++.|+|-...+|.+|+.||.|..|.+...+++..+ .+
T Consensus       269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A  348 (464)
T KOG0284|consen  269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA  348 (464)
T ss_pred             EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999866666555 47


Q ss_pred             cccceeEEEEcCCCeEEEEcCCCCCCCCCC
Q psy17243        236 HLGCVTCVKLAGDGTVAMSDLPPSRPAGPK  265 (392)
Q Consensus       236 ~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~  265 (392)
                      |...|.+++|+|=|.+++++..+.....+.
T Consensus       349 Hd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  349 HDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             cccceeeeeccccceeEeecCCCcceeeec
Confidence            999999999999999999998775554433

>KOG0285|consensus

Probab=100.00  E-value=2.7e-37  Score=245.97  Aligned_cols=235  Identities=23%  Similarity=0.455  Sum_probs=217.3

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      .++.+.+++|.+.|.|+++.|...+|++|+.|++++|||+.+|++..++.+|...|..+++++-..|+++++.|+.|+.|
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            46677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243         96 VADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus        96 d~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      |++..+.++.+.+   .+.|+..+|.-..|++|+.|..+++||++   .........+|..+|.++.+.|-...+++|+.
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR---tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~  297 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR---TRASVHVLSGHTNPVASVMCQPTDPQVITGSH  297 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeec---ccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence            9999999887665   67899999999999999999999999998   55556667789999999999998889999999


Q ss_pred             CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEE
Q psy17243        173 DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVA  252 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~  252 (392)
                      |++|++||++.++....+..|+..+.+++.+ |....+++++.| .|+-|++..+..+..+.+|...|++++.+.||-++
T Consensus       298 D~tvrlWDl~agkt~~tlt~hkksvral~lh-P~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~  375 (460)
T KOG0285|consen  298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLH-PKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLV  375 (460)
T ss_pred             CceEEEeeeccCceeEeeecccceeeEEecC-CchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEE
Confidence            9999999999999999999999999999999 677788888766 69999999999999999999999999999998776


Q ss_pred             EEc
Q psy17243        253 MSD  255 (392)
Q Consensus       253 ~~~  255 (392)
                      ..+
T Consensus       376 ~G~  378 (460)
T KOG0285|consen  376 SGG  378 (460)
T ss_pred             EcC
Confidence            654

>KOG0263|consensus

Probab=100.00  E-value=9.1e-38  Score=272.58  Aligned_cols=205  Identities=24%  Similarity=0.489  Sum_probs=191.6

Q ss_pred             eeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcC
Q psy17243         19 QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD   98 (392)
Q Consensus        19 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   98 (392)
                      .+++.+|.++|..+.|+|+.++|+++|.|++|++|.+.+..++-.+++|..+|..+.|+|.|-++++++.|++-++|...
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD  523 (707)
T ss_pred             eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence            34577999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Cceeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCc
Q psy17243         99 NAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS  175 (392)
Q Consensus        99 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (392)
                      ..+.++.+.   ..+.|+.|+|+.+++++|+.|.++++||+.++   ...+.+.+|..+|.+++|+|+|++|++|+.||.
T Consensus       524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~  600 (707)
T KOG0263|consen  524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL  600 (707)
T ss_pred             cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC---cEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence            887776554   46789999999999999999999999999844   446777899999999999999999999999999


Q ss_pred             EEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      |.+||+.+++++..+.+|++.|.++.|+ .++.+|++|+.|++|++||+...
T Consensus       601 I~iWDl~~~~~v~~l~~Ht~ti~SlsFS-~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  601 IKIWDLANGSLVKQLKGHTGTIYSLSFS-RDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEEEEcCCCcchhhhhcccCceeEEEEe-cCCCEEEecCCCCeEEEEEchhh
Confidence            9999999999999999999999999999 88999999999999999998753

>KOG0291|consensus

Probab=100.00  E-value=1.3e-36  Score=263.73  Aligned_cols=366  Identities=17%  Similarity=0.254  Sum_probs=289.1

Q ss_pred             ccCCeEEEEECCC--------ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce--eEEecccccceE
Q psy17243          3 GMDCLVNVWQMNS--------HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV--VSTFKSHQSTIL   72 (392)
Q Consensus         3 ~~dg~i~vwd~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~   72 (392)
                      +..+.+.||....        ..+.+++.+|-..|.++.|+.|.++|++|+.|-++++|.++..+-  ...+.+|...|.
T Consensus       114 ~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~Vv  193 (893)
T KOG0291|consen  114 GCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVV  193 (893)
T ss_pred             EecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceE
Confidence            3456788898643        334567789999999999999999999999999999999987665  667889999999


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEcCC-----------------------cee-----e------eecc---cceeEEEE
Q psy17243         73 AVAVLSDSRRVVTSDKAGVIAVWVADN-----------------------AQL-----L------YSAL---GPSKCLTV  115 (392)
Q Consensus        73 ~~~~~~~~~~l~~~~~d~~i~iwd~~~-----------------------~~~-----~------~~~~---~~~~~~~~  115 (392)
                      ...|..+...+++.+.||.+.+|....                       ++.     .      .-+.   ..+++..+
T Consensus       194 acfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f  273 (893)
T KOG0291|consen  194 ACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF  273 (893)
T ss_pred             EEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec
Confidence            999999999999999999999996651                       110     0      0111   35678899


Q ss_pred             eCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC-CcEEEEEcCCCeEEEEEecCC
Q psy17243        116 THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-MSLKVWQVVGGKLAQVLVGHT  194 (392)
Q Consensus       116 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~  194 (392)
                      ++..+.|+++-..|...+|++..   ...+....-...+|..++|+..|.+|+.|+.. |.+-||+..+..-+.+.++|.
T Consensus       274 H~~t~~lvvgFssG~f~LyelP~---f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~  350 (893)
T KOG0291|consen  274 HKGTNLLVVGFSSGEFGLYELPD---FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS  350 (893)
T ss_pred             cCCceEEEEEecCCeeEEEecCC---ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc
Confidence            99999999999999999999863   33333333456889999999999999999875 899999999998888899999


Q ss_pred             CceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCcccccccc
Q psy17243        195 DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKK  274 (392)
Q Consensus       195 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~  274 (392)
                      ..+++++++ ++++++++|+.||+|+|||..++-+..++..|...|+.+.|+..|+.+++.+-++....+....++-.  
T Consensus       351 ~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf--  427 (893)
T KOG0291|consen  351 DRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF--  427 (893)
T ss_pred             cceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee--
Confidence            999999999 88999999999999999999999999999999999999999999999999887766655443322221  


Q ss_pred             ccccceeEEEeccCCcceeEEEeecccccceeEEEeecccc-ceecceecc-------CCCC------CCChhhhhhhcc
Q psy17243        275 EVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEE-ISKIPIKDN-------VGSQ------GLGPEQAALAQS  340 (392)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~-~~~~~~~~~-------~~~~------~~s~dg~~la~s  340 (392)
                               .......+.  ........+.+..+..|+.|. .|.+|....       .||.      +|+|+|..|| +
T Consensus       428 ---------RTft~P~p~--QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La-S  495 (893)
T KOG0291|consen  428 ---------RTFTSPEPI--QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA-S  495 (893)
T ss_pred             ---------eeecCCCce--eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE-e
Confidence                     222222222  223333345577888888776 678886431       1332      6999999998 9


Q ss_pred             cChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCcccc
Q psy17243        341 QHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDE  389 (392)
Q Consensus       341 ~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d  389 (392)
                      +++|++||+||+-.....   ..++.....+.+++|+|||+.||++.-|
T Consensus       496 ~SWDkTVRiW~if~s~~~---vEtl~i~sdvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  496 GSWDKTVRIWDIFSSSGT---VETLEIRSDVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             ccccceEEEEEeeccCce---eeeEeeccceeEEEEcCCCCeEEEEEec
Confidence            999999999999776431   3556667778889999999999865544

>KOG0276|consensus

Probab=100.00  E-value=1.3e-37  Score=264.48  Aligned_cols=253  Identities=22%  Similarity=0.330  Sum_probs=226.1

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCE
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      -.+|.|.|||.++...++.+.-..-+|.+..|-+..+++++|+.|..|+||+.++++.++.+..|..-|.+++.+|...+
T Consensus        32 LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~  111 (794)
T KOG0276|consen   32 LYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPY  111 (794)
T ss_pred             eecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCe
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCc-eeeeecc---cceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         83 VVTSDKAGVIAVWVADNA-QLLYSAL---GPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        83 l~~~~~d~~i~iwd~~~~-~~~~~~~---~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      +++++.|-+|++||.+.. .+.+.+.   ..+.+++|+| |.+.+++++-|++|++|.+.   .........+|...|+|
T Consensus       112 vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg---s~~~nfTl~gHekGVN~  188 (794)
T KOG0276|consen  112 VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG---SPHPNFTLEGHEKGVNC  188 (794)
T ss_pred             EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcC---CCCCceeeeccccCcce
Confidence            999999999999999877 3334444   4678999999 67899999999999999997   33344455699999999


Q ss_pred             EEEEcC--CCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        158 FTVTWD--SQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       158 ~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      +++-+-  ..+|++|+.|.+|+|||..+.++++++.+|...|..+.|+ +.-.++++|+.||+++||+..+.+....+.-
T Consensus       189 Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fh-p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~  267 (794)
T KOG0276|consen  189 VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFH-PELPIIISGSEDGTVRIWNSKTYKLEKTLNY  267 (794)
T ss_pred             EEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEec-CCCcEEEEecCCccEEEecCcceehhhhhhc
Confidence            999875  4699999999999999999999999999999999999999 6778999999999999999999888888777


Q ss_pred             cccceeEEEEcCCCeEEEEcCCCC
Q psy17243        236 HLGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       236 ~~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      ....+.+++-.+.+..++.+.+.+
T Consensus       268 gleRvW~I~~~k~~~~i~vG~Deg  291 (794)
T KOG0276|consen  268 GLERVWCIAAHKGDGKIAVGFDEG  291 (794)
T ss_pred             CCceEEEEeecCCCCeEEEeccCC
Confidence            777899998888777777776653

>KOG0273|consensus

Probab=100.00  E-value=2.7e-37  Score=254.24  Aligned_cols=267  Identities=18%  Similarity=0.269  Sum_probs=225.2

Q ss_pred             CCccCCeEEEEECCC----ccceeeec----------cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc
Q psy17243          1 MGGMDCLVNVWQMNS----HELQSTME----------GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS   66 (392)
Q Consensus         1 tg~~dg~i~vwd~~~----~~~~~~~~----------~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~   66 (392)
                      +|+.|-..++|++..    +.....|+          ..+..|++++|+.+|..||+|+.||.++||+ .+|.++.++..
T Consensus       196 sg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~  274 (524)
T KOG0273|consen  196 SGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQ  274 (524)
T ss_pred             ccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhc
Confidence            467788899999864    11111121          1246799999999999999999999999999 56888899999


Q ss_pred             cccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCC
Q psy17243         67 HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKD  143 (392)
Q Consensus        67 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  143 (392)
                      |+++|.++.|+..|.+|++++.|+++.+||..+++..+.+..   +...+.|-. ...|++++.|+.|+++.+.   ...
T Consensus       275 HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~---~~~  350 (524)
T KOG0273|consen  275 HKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVG---EDR  350 (524)
T ss_pred             cCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEec---CCC
Confidence            999999999999999999999999999999988877655443   223455543 4578999999999999997   555


Q ss_pred             cceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecC--------CCcEEEEecC
Q psy17243        144 DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT--------NKSLVVSGSK  215 (392)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~l~~~~~  215 (392)
                      +.....+|.++|.++.|+|.+.+|++++.|++++||..........+.+|...|..+.|+|.        .+..+++++.
T Consensus       351 P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~  430 (524)
T KOG0273|consen  351 PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF  430 (524)
T ss_pred             cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec
Confidence            56666789999999999999999999999999999999999999999999999999999974        3568999999


Q ss_pred             CCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCcccccc
Q psy17243        216 DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLL  272 (392)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  272 (392)
                      |++|++||+..+.++..+..|..+|.+++|+|+|++++++..++....+..+...+.
T Consensus       431 dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~  487 (524)
T KOG0273|consen  431 DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV  487 (524)
T ss_pred             CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee
Confidence            999999999999999999999999999999999999999987766655555444443

>KOG0295|consensus

Probab=100.00  E-value=1.8e-37  Score=247.43  Aligned_cols=289  Identities=22%  Similarity=0.286  Sum_probs=240.1

Q ss_pred             cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        17 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      .+...+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+++|.+.+..+.|+..|+++++++.|-.+++||
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD  178 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence            45566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCc-ee---eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243         97 ADNA-QL---LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus        97 ~~~~-~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      ..+. ++   +..+...+.++++-|.+.++++++.|.+|+.|++.++   .......+|...|..++.+.||.++++++.
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg---~cv~t~~~h~ewvr~v~v~~DGti~As~s~  255 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG---YCVKTFPGHSEWVRMVRVNQDGTIIASCSN  255 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc---eeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence            9874 33   3345557889999999999999999999999999844   445566688999999999999999999999


Q ss_pred             CCcEEEEEcCCCeEEEEEecCCCceeEEEEecC--------------CCcEEEEecCCCeEEEEECCCCceeeeeccccc
Q psy17243        173 DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT--------------NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG  238 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (392)
                      |.++++|-+.++++...++.|..+|.+++|.|.              .+.++.+++.|++|++||+.++.++.++.+|.+
T Consensus       256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn  335 (406)
T KOG0295|consen  256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN  335 (406)
T ss_pred             CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc
Confidence            999999999999999999999999999999862              246999999999999999999999999999999


Q ss_pred             ceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeecccccee
Q psy17243        239 CVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISK  318 (392)
Q Consensus       239 ~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~  318 (392)
                      .|..++|+|.|+++++..+++....+.....+-..        .|. ...|...++.     ...+..|+++|+.|.+++
T Consensus       336 wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk--------~~~-ah~hfvt~lD-----fh~~~p~VvTGsVdqt~K  401 (406)
T KOG0295|consen  336 WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK--------TLE-AHEHFVTSLD-----FHKTAPYVVTGSVDQTVK  401 (406)
T ss_pred             eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee--------ccC-CCcceeEEEe-----cCCCCceEEeccccceee
Confidence            99999999999999998876554333222211111        111 1122222222     222233788888888888


Q ss_pred             ccee
Q psy17243        319 IPIK  322 (392)
Q Consensus       319 ~~~~  322 (392)
                      +|.+
T Consensus       402 vwEc  405 (406)
T KOG0295|consen  402 VWEC  405 (406)
T ss_pred             eeec
Confidence            8864

>KOG0284|consensus

Probab=100.00  E-value=1.4e-38  Score=257.22  Aligned_cols=227  Identities=21%  Similarity=0.315  Sum_probs=201.1

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCce--e
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ--L  102 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~  102 (392)
                      -+.+|..+.|.|+|+.|++|+..|.+.+|+.........++.|+.+|.++.|++++..+++|+.+|.|++|+..-..  .
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            34689999999999999999999999999986555555667899999999999999999999999999999876553  3


Q ss_pred             eeecc-cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEc
Q psy17243        103 LYSAL-GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV  181 (392)
Q Consensus       103 ~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  181 (392)
                      ++.+. ..+++++|+|+...|++++.||.|+|||....   .+.....+|.-.|.+++|+|...++++++.|..|++||.
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~---kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp  251 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP---KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP  251 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---chhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence            44444 68999999999999999999999999999843   333444689999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCe-EEEEc
Q psy17243        182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT-VAMSD  255 (392)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~-~~~~~  255 (392)
                      ++++++.++.+|+..|..+.|+ +++++|++++.|..++++|+++.+.+..+++|...|+++.|+|-.. ++.++
T Consensus       252 rSg~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg  325 (464)
T KOG0284|consen  252 RSGSCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG  325 (464)
T ss_pred             CCcchhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence            9999999999999999999999 6679999999999999999999999999999999999999999544 34443

>KOG0276|consensus

Probab=100.00  E-value=1e-36  Score=259.18  Aligned_cols=356  Identities=15%  Similarity=0.181  Sum_probs=276.8

Q ss_pred             ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEc
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA   97 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   97 (392)
                      ..+.+..|+..|.++.|+|...+++++-.+|.|.|||.++..+++.+.-.+-+|.+..|.+..+.+++|+.|..|++|+.
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            34556669999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC-CCEEEEeeCC
Q psy17243         98 DNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD-SQYLITGSRD  173 (392)
Q Consensus        98 ~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d  173 (392)
                      .+++.+..+..   .+++++.+|...++++++.|-.|++||.+.  .........+|...|.+++|+|. .+.+++++-|
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD  162 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD  162 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC--ceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence            99998876654   678999999999999999999999999973  34455667799999999999995 6799999999


Q ss_pred             CcEEEEEcCCCeEEEEEecCCCceeEEEEecC-CCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEE
Q psy17243        174 MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT-NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVA  252 (392)
Q Consensus       174 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~  252 (392)
                      ++|++|.+.+..+..++.+|...|+|+.+-+. +..+|++|+.|..|+|||..+..+++++.+|...|..+.|+|.-.++
T Consensus       163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii  242 (794)
T KOG0276|consen  163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII  242 (794)
T ss_pred             ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence            99999999999999999999999999999743 35699999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCCh
Q psy17243        253 MSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGP  332 (392)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~  332 (392)
                      +++.+++....+....+++...-.--....|....              ....+.++.|.+++.+.+-..+.....++.+
T Consensus       243 isgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~--------------~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~  308 (794)
T KOG0276|consen  243 ISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAA--------------HKGDGKIAVGFDEGSVTVKLGREEPAVSMDS  308 (794)
T ss_pred             EEecCCccEEEecCcceehhhhhhcCCceEEEEee--------------cCCCCeEEEeccCCcEEEEccCCCCceeecC
Confidence            99998877666655544443322211122232211              1223346777777777766555444445666


Q ss_pred             hhhhhhcccChHHHHHHh------hCCCCCCccccccccccccCcc-ccccccCccCCC-Ccccc
Q psy17243        333 EQAALAQSQHFDQLEALW------NKKSPPRSRRFEHSMSKQNSYS-SRQHSVDTDELS-SPVDE  389 (392)
Q Consensus       333 dg~~la~s~~~d~~i~~W------d~~~~~~~~~~~~~~~~~~~~~-~~~fspdg~~l~-~~~~d  389 (392)
                      .|+.+-+-.++=..+.+-      ++.++++...-.+.+....-+. .++-||+|++++ +|+.+
T Consensus       309 ~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGE  373 (794)
T KOG0276|consen  309 NGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGE  373 (794)
T ss_pred             CccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCcc
Confidence            665544111111222222      4455555111134444433333 399999999987 66544

>KOG0319|consensus

Probab=100.00  E-value=2.3e-37  Score=267.79  Aligned_cols=366  Identities=21%  Similarity=0.256  Sum_probs=286.9

Q ss_pred             CCccCCeEEEEECCCcc-ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNSHE-LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      +|..|+.|++||+.+.. ++..+..|.+.|++++|++|+.-+++++.|..+.|||+.+.+..+.++ -...+.++.+.++
T Consensus       166 sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp-~ye~~E~vv~l~~  244 (775)
T KOG0319|consen  166 SGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLP-LYESLESVVRLRE  244 (775)
T ss_pred             ecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheec-hhhheeeEEEech
Confidence            58899999999998554 488899999999999999999999999999999999998877777776 3456777788777


Q ss_pred             -----CCEEEEEeCCCeEEEEEcCCceeeeeccc----------------------------------------------
Q psy17243         80 -----SRRVVTSDKAGVIAVWVADNAQLLYSALG----------------------------------------------  108 (392)
Q Consensus        80 -----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------------------------------------  108 (392)
                           +.++++++.+|.+++||.++++++.....                                              
T Consensus       245 ~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd  324 (775)
T KOG0319|consen  245 ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND  324 (775)
T ss_pred             hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch
Confidence                 67999999999999999987654332111                                              


Q ss_pred             ceeEEE-EeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe--
Q psy17243        109 PSKCLT-VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK--  185 (392)
Q Consensus       109 ~~~~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--  185 (392)
                      .+..++ +.|+.+++++++..+.+++|++.+...    ....+|...|.++....+|-+|++|+.|.++++|.+.++.  
T Consensus       325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~  400 (775)
T KOG0319|consen  325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYC----QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK  400 (775)
T ss_pred             hheeeeecCCccceEEEEeCCCceEEEecCCCce----EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence            112222 356778999999999999998754332    3667999999999966678899999999999999885442  


Q ss_pred             --EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee---------eeecccccceeEEEEcCCCeEEEE
Q psy17243        186 --LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE---------HFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       186 --~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                        ++....+|...|.+++++.....+|+++|.|+++++|++...+.-         .....|...|++++.+|+.+++++
T Consensus       401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT  480 (775)
T KOG0319|consen  401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT  480 (775)
T ss_pred             hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence              456678999999999998777889999999999999999862211         133579999999999999999999


Q ss_pred             cCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccC-------CC
Q psy17243        255 DLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNV-------GS  327 (392)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~-------~~  327 (392)
                      ++.++....+..+..++.           ....||...+-.+.+.   +..+.++++|.|.++++|.....       ||
T Consensus       481 ~SqDktaKiW~le~~~l~-----------~vLsGH~RGvw~V~Fs---~~dq~laT~SgD~TvKIW~is~fSClkT~eGH  546 (775)
T KOG0319|consen  481 GSQDKTAKIWDLEQLRLL-----------GVLSGHTRGVWCVSFS---KNDQLLATCSGDKTVKIWSISTFSCLKTFEGH  546 (775)
T ss_pred             cccccceeeecccCceEE-----------EEeeCCccceEEEEec---cccceeEeccCCceEEEEEeccceeeeeecCc
Confidence            998876655555433332           2233665554444443   23457899999999999976432       33


Q ss_pred             C------CCChhhhhhhcccChHHHHHHhhCCCCCCccccccccc-cccCccccccccCccCCCCccccc
Q psy17243        328 Q------GLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMS-KQNSYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       328 ~------~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~fspdg~~l~~~~~d~  390 (392)
                      .      +|-.+|+.|+ |++.||.||||++.+.++.    ..+. +..++-+++-+|++..++||+.|.
T Consensus       547 ~~aVlra~F~~~~~qli-S~~adGliKlWnikt~eC~----~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg  611 (775)
T KOG0319|consen  547 TSAVLRASFIRNGKQLI-SAGADGLIKLWNIKTNECE----MTLDAHNDRVWALSVSPLLDMFVTGGGDG  611 (775)
T ss_pred             cceeEeeeeeeCCcEEE-eccCCCcEEEEeccchhhh----hhhhhccceeEEEeecCccceeEecCCCe
Confidence            3      8889999998 9999999999999999983    3344 445577799999999999888763

>KOG0296|consensus

Probab=100.00  E-value=7.9e-37  Score=243.86  Aligned_cols=308  Identities=16%  Similarity=0.201  Sum_probs=247.9

Q ss_pred             ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEc
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA   97 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   97 (392)
                      -+..|..|+.+|.+++.+|+.++++||+.|..-.+|++.++.....+.+|+..|+++.|+.+|.+|++|+.+|.|++|+.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            35578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCC
Q psy17243         98 DNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM  174 (392)
Q Consensus        98 ~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  174 (392)
                      .++.....+..   .+..+.|+|.+..|++|+.||.+.+|.+.++   ...+...+|..++++=.|.|+|+.++++..||
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~---~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg  212 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ---ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG  212 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc---ceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence            99988777653   5678899999999999999999999999743   55566678999999999999999999999999


Q ss_pred             cEEEEEcCCCeEEEEEecC-CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc--------cccceeEEEE
Q psy17243        175 SLKVWQVVGGKLAQVLVGH-TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG--------HLGCVTCVKL  245 (392)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~  245 (392)
                      +|++|++.+++++..+... ....+++.++ ..+..++.|+.++.+++-+..+++.+....+        +...+.++.+
T Consensus       213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~-~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~  291 (399)
T KOG0296|consen  213 TIIVWNPKTGQPLHKITQAEGLELPCISLN-LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES  291 (399)
T ss_pred             eEEEEecCCCceeEEecccccCcCCccccc-cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence            9999999999999888633 3456788888 7788999999999999999999988776552        3333334433


Q ss_pred             cC---CCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceeccee
Q psy17243        246 AG---DGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIK  322 (392)
Q Consensus       246 ~~---dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~  322 (392)
                      .|   .-.+.                                                        +.|+.|+++.+|..
T Consensus       292 ~~~ss~lpL~--------------------------------------------------------A~G~vdG~i~iyD~  315 (399)
T KOG0296|consen  292 IPSSSKLPLA--------------------------------------------------------ACGSVDGTIAIYDL  315 (399)
T ss_pred             cccccccchh--------------------------------------------------------hcccccceEEEEec
Confidence            32   11111                                                        22233333333322


Q ss_pred             cc------------CCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCccccc
Q psy17243        323 DN------------VGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       323 ~~------------~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d~  390 (392)
                      ..            +-...|-+ ..+|+ +++.||.||.||+++++...   .-..++..+..++.+||+++++|+++|.
T Consensus       316 a~~~~R~~c~he~~V~~l~w~~-t~~l~-t~c~~g~v~~wDaRtG~l~~---~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  316 AASTLRHICEHEDGVTKLKWLN-TDYLL-TACANGKVRQWDARTGQLKF---TYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             ccchhheeccCCCceEEEEEcC-cchhe-eeccCceEEeeeccccceEE---EEecCchheeEEEEcCCCcEEEEecCCC
Confidence            10            00003455 57777 89999999999999998833   3345667788899999999999999885

>KOG0263|consensus

Probab=100.00  E-value=1.5e-36  Score=264.98  Aligned_cols=237  Identities=23%  Similarity=0.451  Sum_probs=214.6

Q ss_pred             eeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC-------------------------------ceeEEeccccc
Q psy17243         21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-------------------------------SVVSTFKSHQS   69 (392)
Q Consensus        21 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------------------------------~~~~~~~~~~~   69 (392)
                      ++..-...++|..|++++.+||.|-.|..|++|.+...                               ....++.+|.+
T Consensus       373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G  452 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG  452 (707)
T ss_pred             EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence            34444567999999999999999999999999987621                               12345678999


Q ss_pred             ceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcce
Q psy17243         70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER  146 (392)
Q Consensus        70 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  146 (392)
                      +|....|+|+.++|+++++|+++++|.+.+...+....   .|+..+.|+|.|-+||+++.|++-++|...   .....+
T Consensus       453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d---~~~PlR  529 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD---HNKPLR  529 (707)
T ss_pred             ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc---cCCchh
Confidence            99999999999999999999999999999998775544   488899999999999999999999999987   566777


Q ss_pred             eeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        147 FTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      ...+|...|.|+.|+|+.+|+++|+.|.++++||+.+|..++.|.+|.++|++++|+ +++.+|++|+.||.|.+||+.+
T Consensus       530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S-p~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS-PCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc-CCCceEeecccCCcEEEEEcCC
Confidence            788999999999999999999999999999999999999999999999999999999 6999999999999999999999


Q ss_pred             CceeeeecccccceeEEEEcCCCeEEEEcCCCCCC
Q psy17243        227 GGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRP  261 (392)
Q Consensus       227 ~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~  261 (392)
                      ++++..+.+|.+.|.++.|+.||.+++++..+...
T Consensus       609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV  643 (707)
T KOG0263|consen  609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSV  643 (707)
T ss_pred             CcchhhhhcccCceeEEEEecCCCEEEecCCCCeE
Confidence            99999999999999999999999999998755443

>KOG0281|consensus

Probab=100.00  E-value=6.4e-37  Score=243.17  Aligned_cols=247  Identities=28%  Similarity=0.511  Sum_probs=212.5

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|..|++|+|||.++.+..+.+.||++.|.|+.|.  .+.|++|+.|.+|+|||+++++++.++-.|...|..+.|+  .
T Consensus       212 SGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--n  287 (499)
T KOG0281|consen  212 SGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--N  287 (499)
T ss_pred             cccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--C
Confidence            58899999999999999999999999999999995  4599999999999999999999999999999999999997  4


Q ss_pred             CEEEEEeCCCeEEEEEcCCcee------eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccc
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQL------LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  154 (392)
                      .++++++.|..+.+||+.....      +..+...++.+.|+  .+++++++.|.+|++|++.+   ....+...+|...
T Consensus       288 g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st---~efvRtl~gHkRG  362 (499)
T KOG0281|consen  288 GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST---CEFVRTLNGHKRG  362 (499)
T ss_pred             CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc---eeeehhhhccccc
Confidence            5999999999999999987642      23344456666664  55999999999999999984   3445566689999


Q ss_pred             eEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce-----
Q psy17243        155 ITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE-----  229 (392)
Q Consensus       155 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----  229 (392)
                      |-|+.+  .++++++|+.|.+|++||+..|.+++.+.+|..-|.|+.|.   ...+++|..||+|+|||+..+..     
T Consensus       363 IAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd---~krIVSGaYDGkikvWdl~aaldpra~~  437 (499)
T KOG0281|consen  363 IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDPRAPA  437 (499)
T ss_pred             ceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec---CceeeeccccceEEEEecccccCCcccc
Confidence            999887  58899999999999999999999999999999999999996   66789999999999999987542     


Q ss_pred             ----eeeecccccceeEEEE--------cCCCeEEEEcCCCCCC
Q psy17243        230 ----EHFLAGHLGCVTCVKL--------AGDGTVAMSDLPPSRP  261 (392)
Q Consensus       230 ----~~~~~~~~~~v~~~~~--------~~dg~~~~~~~~~~~~  261 (392)
                          +..+..|.+.|..+.|        +.|..+++|++.+..+
T Consensus       438 ~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  438 STLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             cchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCc
Confidence                3455668888888877        4588899998866544

>KOG0265|consensus

Probab=100.00  E-value=4.6e-35  Score=228.07  Aligned_cols=256  Identities=20%  Similarity=0.328  Sum_probs=226.5

Q ss_pred             CCccCCeEEEEEC-CCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQM-NSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      ||+.|..|.+|++ ...+....+++|.+.|..+.|.+|++.|++++.|.+|+.||.++|+.++.++.|...|+++.-..-
T Consensus        64 SgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rr  143 (338)
T KOG0265|consen   64 SGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRR  143 (338)
T ss_pred             ecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCcccc
Confidence            6899999999995 566777889999999999999999999999999999999999999999999999999999985544


Q ss_pred             CC-EEEEEeCCCeEEEEEcCCceeeeec--ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         80 SR-RVVTSDKAGVIAVWVADNAQLLYSA--LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        80 ~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      |. .+.+++.|+++++||+++...++.+  +-+..++.|..++..+.+|+-|+.|++||++   .........+|..+|+
T Consensus       144 g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r---~~d~~~~lsGh~DtIt  220 (338)
T KOG0265|consen  144 GPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR---KNDGLYTLSGHADTIT  220 (338)
T ss_pred             CCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccc---cCcceEEeecccCcee
Confidence            54 5667889999999999999998887  4577899999999999999999999999998   4455566679999999


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCC----eEEEEEecCCC----ceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGG----KLAQVLVGHTD----HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      .+..+++|.++.+-+.|.++++||++..    +++..+.+|..    ....++|+ +++..+.+|+.|..+++||.....
T Consensus       221 ~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws-p~~~~i~ags~dr~vyvwd~~~r~  299 (338)
T KOG0265|consen  221 GLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS-PNGTKITAGSADRFVYVWDTTSRR  299 (338)
T ss_pred             eEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc-CCCCccccccccceEEEeeccccc
Confidence            9999999999999999999999999753    45777776543    33467899 788899999999999999999999


Q ss_pred             eeeeecccccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        229 EEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       229 ~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      .+..+++|.+.|+++.|+|...++.+...+++
T Consensus       300 ~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  300 ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             EEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence            99999999999999999999999999875543

>KOG0273|consensus

Probab=100.00  E-value=8.7e-35  Score=239.50  Aligned_cols=250  Identities=23%  Similarity=0.336  Sum_probs=223.3

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ||+.||.+++|+.. +.++.+|..|+++|.++.|+..|.||++++.|+++.+||..++...+.+..|..+-..+.|..+ 
T Consensus       252 tG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-  329 (524)
T KOG0273|consen  252 TGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-  329 (524)
T ss_pred             EeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-
Confidence            58899999999964 7888999999999999999999999999999999999999999999999999988888999754 


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      ..+++.+.|+.|+++.+....++.+   +.+++.++.|+|.+.+|++++.|+++++|....   .....-..+|...|..
T Consensus       330 ~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~---~~~~~~l~~Hskei~t  406 (524)
T KOG0273|consen  330 DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ---SNSVHDLQAHSKEIYT  406 (524)
T ss_pred             ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC---Ccchhhhhhhccceee
Confidence            5789999999999999987766544   566899999999999999999999999999863   3333444579999999


Q ss_pred             EEEEcCC---------CEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        158 FTVTWDS---------QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       158 ~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      +.|+|.+         ..+++++.|++|++||+..+.+++.|..|..+|++++|+ +++.++++|+.||.|.+|+.++++
T Consensus       407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS-~~g~ylAsGs~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFS-PNGRYLASGSLDGCVHIWSTKTGK  485 (524)
T ss_pred             EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEec-CCCcEEEecCCCCeeEeccccchh
Confidence            9999953         479999999999999999999999999999999999999 889999999999999999999999


Q ss_pred             eeeeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        229 EEHFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       229 ~~~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      ..+.+.+ .+.|..++|+.+|..+.....
T Consensus       486 l~~s~~~-~~~Ifel~Wn~~G~kl~~~~s  513 (524)
T KOG0273|consen  486 LVKSYQG-TGGIFELCWNAAGDKLGACAS  513 (524)
T ss_pred             eeEeecC-CCeEEEEEEcCCCCEEEEEec
Confidence            9998875 456999999999988877543

>KOG0306|consensus

Probab=100.00  E-value=3.1e-35  Score=255.11  Aligned_cols=377  Identities=17%  Similarity=0.232  Sum_probs=292.6

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|-.||.|++|+..+.....++.+|...|+++.|...|..|++||.|+.|.+||+-...-...+.+|+..|+.+-|..+.
T Consensus        82 VGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~  161 (888)
T KOG0306|consen   82 VGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD  161 (888)
T ss_pred             EEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC
Confidence            47789999999999999999999999999999999999999999999999999998888889999999999999999888


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCC-------------------
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSP-------------------  138 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~-------------------  138 (392)
                      +.+++.+.|+.|++||+++..+..++.   +.+..+++.+  +.+++++.|+.+++|++..                   
T Consensus       162 ~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~  239 (888)
T KOG0306|consen  162 SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF  239 (888)
T ss_pred             eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence            999999999999999999998877654   4566777766  7788888888888887710                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy17243        139 --------------------------------------------------------------------------------  138 (392)
Q Consensus       139 --------------------------------------------------------------------------------  138 (392)
                                                                                                      
T Consensus       240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~  319 (888)
T KOG0306|consen  240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT  319 (888)
T ss_pred             eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence                                                                                            


Q ss_pred             ------------CCCC-------------------Ccc---------eeeeccccceEEEEEEcCCCEEEEeeCCCcEEE
Q psy17243        139 ------------QTHK-------------------DDE---------RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV  178 (392)
Q Consensus       139 ------------~~~~-------------------~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  178 (392)
                                  +...                   ...         ....+|...|.+++++.+...+++|+ .+.+++
T Consensus       320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~Siki  398 (888)
T KOG0306|consen  320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKI  398 (888)
T ss_pred             hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEE
Confidence                        0000                   000         01235778899999998877777665 568999


Q ss_pred             EEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        179 WQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       179 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      |+..+.++++++..  +.+.+..|. |++.+++.|...|.+.+||+.+...+.++++|.+.|.+++.+||++.++++..+
T Consensus       399 Wn~~t~kciRTi~~--~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saD  475 (888)
T KOG0306|consen  399 WNRDTLKCIRTITC--GYILASKFV-PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSAD  475 (888)
T ss_pred             EEccCcceeEEecc--ccEEEEEec-CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCC
Confidence            99999999999863  478888999 788899999999999999999999999999999999999999999999999866


Q ss_pred             CCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceec-------cCCCC---
Q psy17243        259 SRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKD-------NVGSQ---  328 (392)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~-------~~~~~---  328 (392)
                      .....+...+..-..... ..... -.....+.-...+..+..+++++|++.+=.|.+++++..+       .-||-   
T Consensus       476 ktVkfWdf~l~~~~~gt~-~k~ls-l~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV  553 (888)
T KOG0306|consen  476 KTVKFWDFKLVVSVPGTQ-KKVLS-LKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV  553 (888)
T ss_pred             cEEEEEeEEEEeccCccc-ceeee-eccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence            554433322221100000 00000 0000000001112344557789999999999999987554       23544   


Q ss_pred             ---CCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCcccc
Q psy17243        329 ---GLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDE  389 (392)
Q Consensus       329 ---~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d  389 (392)
                         ..|||++.++ |++.|+.|++|-+.-+.+-+   .-+.++.++..+.|-|+..++-+.+.|
T Consensus       554 ~smDIS~DSkliv-TgSADKnVKiWGLdFGDCHK---S~fAHdDSvm~V~F~P~~~~FFt~gKD  613 (888)
T KOG0306|consen  554 LSMDISPDSKLIV-TGSADKNVKIWGLDFGDCHK---SFFAHDDSVMSVQFLPKTHLFFTCGKD  613 (888)
T ss_pred             eEEeccCCcCeEE-eccCCCceEEeccccchhhh---hhhcccCceeEEEEcccceeEEEecCc
Confidence               8999999998 99999999999999998832   334566778889999988777665554

>KOG0266|consensus

Probab=100.00  E-value=7.4e-35  Score=260.29  Aligned_cols=254  Identities=26%  Similarity=0.483  Sum_probs=223.9

Q ss_pred             CCccCCeEEEEECCCcc--ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeC-CCCceeEEecccccceEEEEEe
Q psy17243          1 MGGMDCLVNVWQMNSHE--LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGL-TLGSVVSTFKSHQSTILAVAVL   77 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~   77 (392)
                      +++.|+.+++|+..+.+  ..+.+.+|...|..++|+|+++++++++.|++|+|||+ ..+..++++++|...|++++|+
T Consensus       176 ~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~  255 (456)
T KOG0266|consen  176 AASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS  255 (456)
T ss_pred             EccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEec
Confidence            36789999999998877  78888899999999999999999999999999999999 5668999999999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecccc-
Q psy17243         78 SDSRRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE-  153 (392)
Q Consensus        78 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-  153 (392)
                      |+++.+++|+.|++|++||+++++++..+   ...+.+++|++++++|++++.|+.|++||+.++... .......+.. 
T Consensus       256 p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~  334 (456)
T KOG0266|consen  256 PDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENS  334 (456)
T ss_pred             CCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCC
Confidence            99999999999999999999998876654   457889999999999999999999999999866532 1112222222 


Q ss_pred             -ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEE---EEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        154 -EITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV---AVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       154 -~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                       ++++++|+|++.+++++..|+.+++||+..++....+.+|...+.++   ..+ ..+.++++|+.|+.|++||+.++..
T Consensus       335 ~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~sg~~d~~v~~~~~~s~~~  413 (456)
T KOG0266|consen  335 APVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS-TGGKLIYSGSEDGSVYVWDSSSGGI  413 (456)
T ss_pred             CceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc-CCCCeEEEEeCCceEEEEeCCccch
Confidence             69999999999999999999999999999999999999988764333   333 6789999999999999999999999


Q ss_pred             eeeeccc-ccceeEEEEcCCCeEEEEcC
Q psy17243        230 EHFLAGH-LGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       230 ~~~~~~~-~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +..+.+| ...+..+.+++...++++..
T Consensus       414 ~~~l~~h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  414 LQRLEGHSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             hhhhcCCCCCceeccccCCCcCeeeecC
Confidence            9999999 88999999999999999875

>KOG0285|consensus

Probab=100.00  E-value=2.6e-35  Score=234.71  Aligned_cols=254  Identities=19%  Similarity=0.393  Sum_probs=226.6

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ||+.|++|+|||+.++++..++.+|-..|..+++|+-..|+++++.|+.|+.||++..+.++.+.+|-+.|.+++.+|.-
T Consensus       168 tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl  247 (460)
T KOG0285|consen  168 TGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL  247 (460)
T ss_pred             ecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      ..|++++.|.++++||+++...+..+.   .++..+.+.|-...+++|+.|++|++||++.+   ........|...+.+
T Consensus       248 dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag---kt~~tlt~hkksvra  324 (460)
T KOG0285|consen  248 DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG---KTMITLTHHKKSVRA  324 (460)
T ss_pred             eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccC---ceeEeeecccceeeE
Confidence            999999999999999999998776655   57888999998999999999999999999843   444455678999999


Q ss_pred             EEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec---
Q psy17243        158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA---  234 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---  234 (392)
                      ++.+|....+++++.| .|+-|++..+..+..+.+|+..|++++..  .+.++++|+.+|.+.+||.+++...+..+   
T Consensus       325 l~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n--sD~v~~~G~dng~~~fwdwksg~nyQ~~~t~v  401 (460)
T KOG0285|consen  325 LCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN--SDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIV  401 (460)
T ss_pred             EecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeec--cCceEEEcCCceEEEEEecCcCcccccccccc
Confidence            9999999999999877 59999999999999999999999999886  45688899999999999999886655442   


Q ss_pred             -----ccccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        235 -----GHLGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       235 -----~~~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                           ..+..|.+.+|...|..++++-.++.
T Consensus       402 qpGSl~sEagI~as~fDktg~rlit~eadKt  432 (460)
T KOG0285|consen  402 QPGSLESEAGIFASCFDKTGSRLITGEADKT  432 (460)
T ss_pred             cCCccccccceeEEeecccCceEEeccCCcc
Confidence                 12347899999999999999864433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.9e-34  Score=245.88  Aligned_cols=234  Identities=25%  Similarity=0.460  Sum_probs=206.4

Q ss_pred             eeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcC
Q psy17243         19 QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD   98 (392)
Q Consensus        19 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   98 (392)
                      ++++++|..+|.+++|+|++++|++++.||.|++|++.+++....+..|...+..+.|.|+++.+++++.++.+++||+.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            35677899999999999999999999999999999999998888888899999999999999999999999999999999


Q ss_pred             Cceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCc
Q psy17243         99 NAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS  175 (392)
Q Consensus        99 ~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (392)
                      +++.+..+   ...+.++.++++++++++++.++.|.+||+...   ........|...+.+++|+|++.++++++.++.
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG---KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc---EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence            86555443   347889999999888988888999999999733   223333367888999999999989998888999


Q ss_pred             EEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      |++||+++++.+..+..|...+.++.|+ +++..+++++.|+.|++||+++++.+..+..|...+.++.|+|++.+++++
T Consensus       159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  237 (289)
T cd00200         159 IKLWDLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG  237 (289)
T ss_pred             EEEEEccccccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence            9999999999999998899999999999 566677778889999999999999988888899999999999998888887


Q ss_pred             C
Q psy17243        256 L  256 (392)
Q Consensus       256 ~  256 (392)
                      .
T Consensus       238 ~  238 (289)
T cd00200         238 S  238 (289)
T ss_pred             c
Confidence            5

>KOG0292|consensus

Probab=100.00  E-value=6.1e-35  Score=257.53  Aligned_cols=255  Identities=18%  Similarity=0.297  Sum_probs=229.3

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCE
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      --.|.|++||..-+.++..+..|.++|..++|+|.+.++++|+.|-.|++|+..+.+++.++.+|-..|..+.|++.-..
T Consensus        28 lHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPW  107 (1202)
T KOG0292|consen   28 LHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPW  107 (1202)
T ss_pred             ecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCce
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCC----------------
Q psy17243         83 VVTSDKAGVIAVWVADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKD----------------  143 (392)
Q Consensus        83 l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~----------------  143 (392)
                      |++++.|.+|+||+..+.+++..+.+   .+.|..|+|....+++++-|.+|++||+.....+.                
T Consensus       108 IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~  187 (1202)
T KOG0292|consen  108 ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN  187 (1202)
T ss_pred             EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence            99999999999999999998776655   67899999999999999999999999986422111                


Q ss_pred             ----------cceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe--EEEEEecCCCceeEEEEecCCCcEEE
Q psy17243        144 ----------DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK--LAQVLVGHTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       144 ----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~  211 (392)
                                ......+|...|+-++|+|.-.++++|+.|..|++|.+...+  .+.+..+|...|.++-|+ +..++++
T Consensus       188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh-p~q~lIl  266 (1202)
T KOG0292|consen  188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH-PHQDLIL  266 (1202)
T ss_pred             hhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec-CccceeE
Confidence                      112345799999999999999999999999999999987554  456678999999999999 7788999


Q ss_pred             EecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        212 SGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       212 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      +.+.|++|+|||+...+.++.+...+.....++-+|...+++.+.+.
T Consensus       267 SnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDs  313 (1202)
T KOG0292|consen  267 SNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDS  313 (1202)
T ss_pred             ecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCC
Confidence            99999999999999999999998888899999999999999886533

>KOG0316|consensus

Probab=100.00  E-value=3e-34  Score=216.18  Aligned_cols=248  Identities=21%  Similarity=0.259  Sum_probs=215.1

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      |++.|.+|++|+...+.+++++.+|...|..++.+.|+..+++|+.|..+.+||+++|+.++.+.+|.+.|+.++|+.+.
T Consensus        34 tcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees  113 (307)
T KOG0316|consen   34 TCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES  113 (307)
T ss_pred             EcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCc--eeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         81 RRVVTSDKAGVIAVWVADNA--QLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~--~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      ..+++|+.|..+++||-++.  ++++.+.   ..+.++.+  .+..+++|+.||+++.||++.+...     ......+|
T Consensus       114 SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~-----sDy~g~pi  186 (307)
T KOG0316|consen  114 SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLS-----SDYFGHPI  186 (307)
T ss_pred             eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceee-----hhhcCCcc
Confidence            99999999999999998765  3444333   34444444  5678999999999999999854332     12346799


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEE--EEecCCCcEEEEecCCCeEEEEECCCCceeeee
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                      ++++|+++++..++++.|+++++.|-.+++.+..+++|...-..+  ++. .....+++|++||.|++||+.....+..+
T Consensus       187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~-qsdthV~sgSEDG~Vy~wdLvd~~~~sk~  265 (307)
T KOG0316|consen  187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN-QSDTHVFSGSEDGKVYFWDLVDETQISKL  265 (307)
T ss_pred             eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec-ccceeEEeccCCceEEEEEeccceeeeee
Confidence            999999999999999999999999999999999999998765433  455 56778999999999999999999999999


Q ss_pred             cccccc-eeEEEEcCCCeEEEEcC
Q psy17243        234 AGHLGC-VTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       234 ~~~~~~-v~~~~~~~dg~~~~~~~  256 (392)
                      ..+... |.+++++|.-.-++++.
T Consensus       266 ~~~~~v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  266 SVVSTVIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             ccCCceeEEeeecccCccceeEec
Confidence            888876 89999999766555543

>KOG0265|consensus

Probab=100.00  E-value=1.4e-33  Score=219.81  Aligned_cols=236  Identities=17%  Similarity=0.332  Sum_probs=198.4

Q ss_pred             ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC-CCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT-LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      ++..+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++. .-+-...+++|.+.|..+.|.+|++.+++++.|.+++.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            344567899999999999999999999999999999953 4455677889999999999999999999999999999999


Q ss_pred             cCCceeeeecccceeEEEEe-C--C-CCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243         97 ADNAQLLYSALGPSKCLTVT-H--N-MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~-~--~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      .++++.++.+..+..++-.- |  - ..++.+++.|+++++||+++...   .+. .....+++++.|..++..+++|+-
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~---~~t-~~~kyqltAv~f~d~s~qv~sggI  194 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA---IKT-FENKYQLTAVGFKDTSDQVISGGI  194 (338)
T ss_pred             cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch---hhc-cccceeEEEEEecccccceeeccc
Confidence            99999999988876554332 2  2 34677888999999999984332   222 245678999999999999999999


Q ss_pred             CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC----Cceeeeeccccc----ceeEEE
Q psy17243        173 DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET----GGEEHFLAGHLG----CVTCVK  244 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~----~v~~~~  244 (392)
                      |+.|++||++....+..+.+|.++|+.+..+ +++.++.+-+.|.++++||++-    .+++..+.+|..    ....++
T Consensus       195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             cCceeeeccccCcceEEeecccCceeeEEec-cCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence            9999999999999999999999999999999 7888999999999999999874    334666666543    345789


Q ss_pred             EcCCCeEEEEcCCC
Q psy17243        245 LAGDGTVAMSDLPP  258 (392)
Q Consensus       245 ~~~dg~~~~~~~~~  258 (392)
                      |+|+++.+..++.+
T Consensus       274 wsp~~~~i~ags~d  287 (338)
T KOG0265|consen  274 WSPNGTKITAGSAD  287 (338)
T ss_pred             ccCCCCcccccccc
Confidence            99999988887644

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.4e-33  Score=236.42  Aligned_cols=255  Identities=28%  Similarity=0.479  Sum_probs=226.5

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|++|++.+++....+..|...+..+.|+|++++|++++.||.|++|++++++.+..+..|...+.++.|++++
T Consensus        26 ~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~  105 (289)
T cd00200          26 TGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG  105 (289)
T ss_pred             EeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC
Confidence            36679999999999998888899999999999999999999999999999999999988888898899999999999998


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      +++++++.++.+.+||+.+++....+   ...+.++.++|++.++++++.++.|++||++....   ......+...+.+
T Consensus       106 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~  182 (289)
T cd00200         106 RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC---VATLTGHTGEVNS  182 (289)
T ss_pred             CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc---ceeEecCccccce
Confidence            88888888999999999987766554   34688999999999999988899999999974332   3333467779999


Q ss_pred             EEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccc
Q psy17243        158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL  237 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  237 (392)
                      +.|+|+++.+++++.++.|++||+++++.+..+..|...+.++.|+ +++.++++++.||.|++||+.+++....+..|.
T Consensus       183 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~  261 (289)
T cd00200         183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS-PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT  261 (289)
T ss_pred             EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc-CCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence            9999999999999999999999999999988888899999999999 558888888889999999999999999999999


Q ss_pred             cceeEEEEcCCCeEEEEcCCCC
Q psy17243        238 GCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       238 ~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      ..|.+++|++++.+++++..++
T Consensus       262 ~~i~~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         262 NSVTSLAWSPDGKRLASGSADG  283 (289)
T ss_pred             CcEEEEEECCCCCEEEEecCCC
Confidence            9999999999999999876543

>KOG0293|consensus

Probab=100.00  E-value=1.6e-34  Score=234.28  Aligned_cols=246  Identities=22%  Similarity=0.377  Sum_probs=211.5

Q ss_pred             CCccCCeEEEEECCC---ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc-cccceEEEEE
Q psy17243          1 MGGMDCLVNVWQMNS---HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS-HQSTILAVAV   76 (392)
Q Consensus         1 tg~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~   76 (392)
                      ||+.|.+..+|.+..   .++.+++.+|..+|..+.||||.++|++|+.|..+.+||+.+|.....+.. +...+.+++|
T Consensus       241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W  320 (519)
T KOG0293|consen  241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW  320 (519)
T ss_pred             eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence            588999999998753   456888999999999999999999999999999999999999998887763 3578999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCceeee---ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecccc
Q psy17243         77 LSDSRRVVTSDKAGVIAVWVADNAQLLY---SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        77 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      .|||..+++|+.|+.+..||++....-.   .....+.++++.+||+++++.+.|..|++|+........    ......
T Consensus       321 ~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~----lise~~  396 (519)
T KOG0293|consen  321 CPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG----LISEEQ  396 (519)
T ss_pred             ccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc----cccccC
Confidence            9999999999999999999998654321   122457899999999999999999999999986332221    234568


Q ss_pred             ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCc--eeEEEEecCCCcEEEEecCCCeEEEEECCCCceee
Q psy17243        154 EITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDH--VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      +|++++++.+++++++.-.+..+++||++..+.++++.+|+..  +..-+|.-.+..++++|++|+.|+||+..+++++.
T Consensus       397 ~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~  476 (519)
T KOG0293|consen  397 PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA  476 (519)
T ss_pred             ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE
Confidence            8999999999999999999999999999999999999999865  33345664567899999999999999999999999


Q ss_pred             eecccccceeEEEEcCCCe
Q psy17243        232 FLAGHLGCVTCVKLAGDGT  250 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~dg~  250 (392)
                      .+.+|...|++++|+|...
T Consensus       477 ~LsGHs~~vNcVswNP~~p  495 (519)
T KOG0293|consen  477 VLSGHSKTVNCVSWNPADP  495 (519)
T ss_pred             eecCCcceeeEEecCCCCH
Confidence            9999999999999998643

>KOG0643|consensus

Probab=100.00  E-value=3.3e-34  Score=219.81  Aligned_cols=234  Identities=15%  Similarity=0.205  Sum_probs=206.7

Q ss_pred             eeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCc
Q psy17243         21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA  100 (392)
Q Consensus        21 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  100 (392)
                      .+++|..+++.+.|+.+|.+|++|+.|.+..+|--.+|+.+.++.+|.+.|.++....+.+++++|+.|.++++||.++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecc--cceeEEEEeCCCCEEEEecCC-----CcEEEEeCCCCC----CCCcceeeeccccceEEEEEEcCCCEEEE
Q psy17243        101 QLLYSAL--GPSKCLTVTHNMKYIVSGDGD-----NSLRIWPTSPQT----HKDDERFTVSHSEEITCFTVTWDSQYLIT  169 (392)
Q Consensus       101 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  169 (392)
                      +.+....  .++..+.|++++++++....+     +.|.++|++...    ...+......+.+.++.+-|.|-+++|++
T Consensus        85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~  164 (327)
T KOG0643|consen   85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA  164 (327)
T ss_pred             cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence            9987655  578899999999998887653     689999998443    23334444567789999999999999999


Q ss_pred             eeCCCcEEEEEcCCCe-EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCC
Q psy17243        170 GSRDMSLKVWQVVGGK-LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGD  248 (392)
Q Consensus       170 ~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~d  248 (392)
                      |.+||.|.+||+++++ .+.....|...|+.++++ ++..++++++.|.+-++||..+.+.+.++. ...+|++.+++|-
T Consensus       165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~  242 (327)
T KOG0643|consen  165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPL  242 (327)
T ss_pred             ecCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEEee-ecccccceecccc
Confidence            9999999999999984 455567799999999999 889999999999999999999999998887 5679999999997


Q ss_pred             CeEEEEcC
Q psy17243        249 GTVAMSDL  256 (392)
Q Consensus       249 g~~~~~~~  256 (392)
                      ...++.+.
T Consensus       243 ~d~VilgG  250 (327)
T KOG0643|consen  243 LDHVILGG  250 (327)
T ss_pred             cceEEecC
Confidence            66666543

>KOG0645|consensus

Probab=100.00  E-value=3.2e-33  Score=214.78  Aligned_cols=233  Identities=20%  Similarity=0.319  Sum_probs=196.7

Q ss_pred             cceeeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCC---ceeEEe-cccccceEEEEEecCCCEEEEEeCCCe
Q psy17243         17 ELQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLG---SVVSTF-KSHQSTILAVAVLSDSRRVVTSDKAGV   91 (392)
Q Consensus        17 ~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~   91 (392)
                      ..++.+++|++.+..++|+|. |..||+|+.|..|++|+...+   .+...+ .+|+..|.+++|+|.|++|++++.|.+
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            356778899999999999997 889999999999999998853   333333 368999999999999999999999999


Q ss_pred             EEEEEcCCc--eeee---ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCE
Q psy17243         92 IAVWVADNA--QLLY---SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY  166 (392)
Q Consensus        92 i~iwd~~~~--~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (392)
                      +.||.-..+  +++.   .+...+.|++|+++|++||+++.|..|-+|.+..............|...|..+.|+|...+
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl  164 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL  164 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence            999987655  3333   45557899999999999999999999999999877777777778899999999999999999


Q ss_pred             EEEeeCCCcEEEEEcC---CCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEE
Q psy17243        167 LITGSRDMSLKVWQVV---GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCV  243 (392)
Q Consensus       167 l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  243 (392)
                      |++++.|.+|++|+-.   .-.+.+++.+|...|.+++|. +.+..|++++.|++++||...+.-    -..|...+..+
T Consensus       165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~-~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v  239 (312)
T KOG0645|consen  165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD-NIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDV  239 (312)
T ss_pred             eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec-CCCceEEEecCCcceEeeeeccCc----chhcccceEee
Confidence            9999999999999876   336889999999999999999 677899999999999999865221    12367788899


Q ss_pred             EEcCCCeEEEEcC
Q psy17243        244 KLAGDGTVAMSDL  256 (392)
Q Consensus       244 ~~~~dg~~~~~~~  256 (392)
                      +|. +| .++++.
T Consensus       240 ~W~-~~-~IaS~g  250 (312)
T KOG0645|consen  240 PWD-NG-VIASGG  250 (312)
T ss_pred             eec-cc-ceEecc
Confidence            998 33 445544

>KOG0293|consensus

Probab=100.00  E-value=1.4e-34  Score=234.53  Aligned_cols=278  Identities=15%  Similarity=0.252  Sum_probs=221.9

Q ss_pred             cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC---ceeEEecccccceEEEEEecCCCEEEEEeCCCeEE
Q psy17243         17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG---SVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIA   93 (392)
Q Consensus        17 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   93 (392)
                      +..+.+..|++.|+-+.||++|+|||+++.|.+..+|++...   +..+++.+|..+|..+.|+||.++|++++.+..+.
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            445667889999999999999999999999999999987554   44788889999999999999999999999999999


Q ss_pred             EEEcCCceeeeeccc----ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEE
Q psy17243         94 VWVADNAQLLYSALG----PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLIT  169 (392)
Q Consensus        94 iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  169 (392)
                      +||..++.....+..    .+.+.+|.||+..+++|+.|+.+..||+.....   ..........|.++++++||+++++
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~---~~W~gvr~~~v~dlait~Dgk~vl~  371 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL---GNWEGVRDPKVHDLAITYDGKYVLL  371 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh---hcccccccceeEEEEEcCCCcEEEE
Confidence            999999988765443    567999999999999999999999999974321   1122223467999999999999999


Q ss_pred             eeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccc--eeEEEEc-
Q psy17243        170 GSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGC--VTCVKLA-  246 (392)
Q Consensus       170 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~-  246 (392)
                      .+.|..|++|+..+......+. ...+|++++++ .++.+++..-.+..+++||++..+.+..+.+|...  +..-+|- 
T Consensus       372 v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS-~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg  449 (519)
T KOG0293|consen  372 VTVDKKIRLYNREARVDRGLIS-EEQPITSFSIS-KDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG  449 (519)
T ss_pred             Eecccceeeechhhhhhhcccc-ccCceeEEEEc-CCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence            9999999999988765554443 56789999999 88889888889999999999999889899888642  2222222 


Q ss_pred             CCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceec---
Q psy17243        247 GDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKD---  323 (392)
Q Consensus       247 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~---  323 (392)
                      .+..+                                                        +++||.|+.+.+|+..   
T Consensus       450 ~~~~f--------------------------------------------------------iaSGSED~kvyIWhr~sgk  473 (519)
T KOG0293|consen  450 GNDKF--------------------------------------------------------IASGSEDSKVYIWHRISGK  473 (519)
T ss_pred             CCcce--------------------------------------------------------EEecCCCceEEEEEccCCc
Confidence            22344                                                        4445555555555432   


Q ss_pred             ----------cCCCCCCChhhhhhhcccChHHHHHHhhCCCC
Q psy17243        324 ----------NVGSQGLGPEQAALAQSQHFDQLEALWNKKSP  355 (392)
Q Consensus       324 ----------~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~  355 (392)
                                ....++|+|..+.+.++|++||+||||.....
T Consensus       474 ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  474 LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence                      22333899998877779999999999987654

>KOG0296|consensus

Probab=100.00  E-value=1e-33  Score=226.19  Aligned_cols=257  Identities=16%  Similarity=0.278  Sum_probs=217.2

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ||+.|..-.+|++.+++....+.+|+..|+++.|+.+|.+||||..+|.|+||+..++.....+...-..|.=+.|+|.+
T Consensus        81 TGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a  160 (399)
T KOG0296|consen   81 TGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA  160 (399)
T ss_pred             ecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccc
Confidence            68999999999999999999999999999999999999999999999999999999999888887667788889999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeee---ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcce-----------
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLY---SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER-----------  146 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----------  146 (392)
                      ..|+.|+.||.+-+|.+.++...+   -+..+.++-.|.|+|+.++++..||+|++||+.+........           
T Consensus       161 ~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~  240 (399)
T KOG0296|consen  161 HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCIS  240 (399)
T ss_pred             cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccc
Confidence            999999999999999999864443   445577889999999999999999999999997643221111           


Q ss_pred             -------------------------------------eeeccccceEEEEEEc---CCCEEEEeeCCCcEEEEEcCCCeE
Q psy17243        147 -------------------------------------FTVSHSEEITCFTVTW---DSQYLITGSRDMSLKVWQVVGGKL  186 (392)
Q Consensus       147 -------------------------------------~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~  186 (392)
                                                           ....+...+.|+.+.|   .=.+.++|+-||+|.|||+...+.
T Consensus       241 ~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~  320 (399)
T KOG0296|consen  241 LNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL  320 (399)
T ss_pred             cccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh
Confidence                                                 0001122223333333   334678899999999999998887


Q ss_pred             EEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        187 AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       187 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      .+.+. |..+|+.+.|. + ..+|++++.||.|+.||.++|++...+.+|...|.+++++|+++++++.+.+..
T Consensus       321 R~~c~-he~~V~~l~w~-~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  321 RHICE-HEDGVTKLKWL-N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             heecc-CCCceEEEEEc-C-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence            77766 88999999998 3 678899999999999999999999999999999999999999999999876543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.4e-33  Score=268.83  Aligned_cols=249  Identities=18%  Similarity=0.283  Sum_probs=203.3

Q ss_pred             CCeEEEEECCCccceee-----eccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC----c----eeEEecccccce
Q psy17243          5 DCLVNVWQMNSHELQST-----MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG----S----VVSTFKSHQSTI   71 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~----~~~~~~~~~~~v   71 (392)
                      +|.+++|+..+.+....     +..|...|.+++|+|++++|++|+.|+.|+||++...    .    ....+. +...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence            56678888876554433     3458999999999999999999999999999997542    1    122333 35679


Q ss_pred             EEEEEecC-CCEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcce
Q psy17243         72 LAVAVLSD-SRRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDER  146 (392)
Q Consensus        72 ~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  146 (392)
                      .+++|++. +.+|++++.||.|++||+.+++.+..+   ...+.+++|+| ++.+|++|+.|+.|++||++.....   .
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~---~  612 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI---G  612 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE---E
Confidence            99999874 689999999999999999988776544   45789999997 7899999999999999999754322   2


Q ss_pred             eeeccccceEEEEEE-cCCCEEEEeeCCCcEEEEEcCCCe-EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        147 FTVSHSEEITCFTVT-WDSQYLITGSRDMSLKVWQVVGGK-LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       147 ~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      .. .+...+.++.|+ +++.+|++|+.||.|++||+++.+ ++..+.+|...|.++.|.  ++.+|++++.|+.|++||+
T Consensus       613 ~~-~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~  689 (793)
T PLN00181        613 TI-KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDL  689 (793)
T ss_pred             EE-ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeC
Confidence            22 234678999995 468999999999999999998765 567788999999999997  4678999999999999999


Q ss_pred             CCC------ceeeeecccccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        225 ETG------GEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       225 ~~~------~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      ..+      +.+..+.+|...+..++|++++.+++++..++.
T Consensus       690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~  731 (793)
T PLN00181        690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE  731 (793)
T ss_pred             CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence            743      567789999999999999999999999875543

>KOG0645|consensus

Probab=100.00  E-value=1.9e-32  Score=210.60  Aligned_cols=253  Identities=18%  Similarity=0.238  Sum_probs=209.3

Q ss_pred             CCccCCeEEEEECCC---ccceeee-ccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC--ceeEEecccccceEEE
Q psy17243          1 MGGMDCLVNVWQMNS---HELQSTM-EGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--SVVSTFKSHQSTILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~~~---~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~   74 (392)
                      |++.|+.|++|+..+   ..+...+ .+|+..|.+++|+|.|++|+++|.|.++.||.-..+  +++..+.+|++.|.++
T Consensus        32 scg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~V  111 (312)
T KOG0645|consen   32 SCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCV  111 (312)
T ss_pred             eecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEE
Confidence            578999999999984   4445445 359999999999999999999999999999986644  7789999999999999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCce------eeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee
Q psy17243         75 AVLSDSRRVVTSDKAGVIAVWVADNAQ------LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        75 ~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      +|+++|++|++++.|..|-||.+....      .+..+...+..+.|+|...+|++++.|++|++|.-.....-......
T Consensus       112 aws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl  191 (312)
T KOG0645|consen  112 AWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL  191 (312)
T ss_pred             EEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe
Confidence            999999999999999999999887542      34556677889999999999999999999999987644444555666


Q ss_pred             eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC-
Q psy17243        149 VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG-  227 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-  227 (392)
                      .+|...|.+++|++.|..|++++.|++++||...+.-    -..|+..++.+.|.   ...|++++.|+.|++|.-... 
T Consensus       192 ~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~  264 (312)
T KOG0645|consen  192 DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD---NGVIASGGGDDAIRLFKESDSP  264 (312)
T ss_pred             cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec---ccceEeccCCCEEEEEEecCCC
Confidence            7888899999999999999999999999999976321    12377889999997   568999999999999986642 


Q ss_pred             -----ceee-eecccccceeEEEEcCC-CeEEEEcCCCCC
Q psy17243        228 -----GEEH-FLAGHLGCVTCVKLAGD-GTVAMSDLPPSR  260 (392)
Q Consensus       228 -----~~~~-~~~~~~~~v~~~~~~~d-g~~~~~~~~~~~  260 (392)
                           +.+. .-..|...|++++|.|. ...++++.+++.
T Consensus       265 d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~  304 (312)
T KOG0645|consen  265 DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI  304 (312)
T ss_pred             CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence                 1111 33468889999999994 567777765543

>KOG0316|consensus

Probab=100.00  E-value=5.4e-34  Score=214.77  Aligned_cols=216  Identities=18%  Similarity=0.339  Sum_probs=193.8

Q ss_pred             ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEc
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA   97 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   97 (392)
                      ..+.+..|.++|.++.|+-+|+|.++|+.|.+|++|+...+.+++++.+|...|..++.+.|+..+++++.|..+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCC
Q psy17243         98 DNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM  174 (392)
Q Consensus        98 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  174 (392)
                      ++++.++.+.   +.++.+.|+.+...+++|+.|..+++||.++.... +.+........|.++...  +..+++|+.||
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e-PiQildea~D~V~Si~v~--~heIvaGS~DG  165 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE-PIQILDEAKDGVSSIDVA--EHEIVAGSVDG  165 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC-ccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence            9999987665   47899999999999999999999999999876443 334444567788888875  66899999999


Q ss_pred             cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccc
Q psy17243        175 SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGC  239 (392)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (392)
                      +++.||++.++...-+.+  .+|++++|+ ++++..++++.|+++++.|-.+|+.+..+++|.+.
T Consensus       166 tvRtydiR~G~l~sDy~g--~pit~vs~s-~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~  227 (307)
T KOG0316|consen  166 TVRTYDIRKGTLSSDYFG--HPITSVSFS-KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM  227 (307)
T ss_pred             cEEEEEeecceeehhhcC--CcceeEEec-CCCCEEEEeeccceeeecccchhHHHHHhcccccc
Confidence            999999999988776654  589999999 78889999999999999999999999999998653

>KOG0282|consensus

Probab=100.00  E-value=7.7e-35  Score=240.62  Aligned_cols=241  Identities=17%  Similarity=0.277  Sum_probs=205.3

Q ss_pred             ccceeeeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCC-CceeEEecccccceEEEEEecCCCEEEEEeCCCeEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTL-GSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIA   93 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   93 (392)
                      .+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+++|..+++++.|+.++
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            356678899999999999999 889999999999999999976 899999999999999999999999999999999999


Q ss_pred             EEEcCCceeeeeccc--ceeEEEEeCCC-CEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEe
Q psy17243         94 VWVADNAQLLYSALG--PSKCLTVTHNM-KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITG  170 (392)
Q Consensus        94 iwd~~~~~~~~~~~~--~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  170 (392)
                      +||.++|+++..+..  ...|+.++|++ +.+++|..|+.|+.||+++++   .......|-+.|..+.|-++++++++.
T Consensus       284 lwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  284 LWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---VVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH---HHHHHHhhhhheeeeEEccCCceEeee
Confidence            999999999877654  67899999988 899999999999999999654   334445688999999999999999999


Q ss_pred             eCCCcEEEEEcCCCeEEEEEe-cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce---eeeeccccc--ceeEEE
Q psy17243        171 SRDMSLKVWQVVGGKLAQVLV-GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE---EHFLAGHLG--CVTCVK  244 (392)
Q Consensus       171 ~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~~~  244 (392)
                      +.|+.++||+.+.+-+++... .+.....++..+ +++.++++-+.|+.|.++.+...-.   -..+.+|..  .-..+.
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH-PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecC-CCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence            999999999999887665443 233355678888 7888999999999999998764322   235667754  567889


Q ss_pred             EcCCCeEEEEcCCCCC
Q psy17243        245 LAGDGTVAMSDLPPSR  260 (392)
Q Consensus       245 ~~~dg~~~~~~~~~~~  260 (392)
                      |||||.+++++..+++
T Consensus       440 fSpDG~~l~SGdsdG~  455 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGK  455 (503)
T ss_pred             EcCCCCeEEeecCCcc
Confidence            9999999999874443

>KOG0282|consensus

Probab=100.00  E-value=5.4e-34  Score=235.65  Aligned_cols=252  Identities=20%  Similarity=0.270  Sum_probs=216.9

Q ss_pred             CCccCCeEEEEECCC-ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNS-HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      +|+.|+.|+||++-. +++++++.+|..+|..++|+++|..+++++.|+.|++||+++|+++..+. ....++++.|+|+
T Consensus       232 S~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd  310 (503)
T KOG0282|consen  232 SGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPD  310 (503)
T ss_pred             ecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCC
Confidence            589999999999865 89999999999999999999999999999999999999999999999998 5678899999999


Q ss_pred             C-CEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         80 S-RRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        80 ~-~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      + +.+++|+.|+.|+.||+++++.++++   .+.+..+.|-++++++++.+.|+.+++|+.+..-.......  .+....
T Consensus       311 ~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~--~~~hsm  388 (503)
T KOG0282|consen  311 NQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD--PEMHTM  388 (503)
T ss_pred             CCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc--hhhccC
Confidence            8 78999999999999999999988765   45788999999999999999999999999975433333222  234456


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCe---EEEEEecCCCc--eeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGK---LAQVLVGHTDH--VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      .++..+|+++++++-+.|..|.+|.+...-   ..+.+.+|..+  -..+.|| +++.+|++|+.||.+.+||.++-+.+
T Consensus       389 P~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS-pDG~~l~SGdsdG~v~~wdwkt~kl~  467 (503)
T KOG0282|consen  389 PCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS-PDGRTLCSGDSDGKVNFWDWKTTKLV  467 (503)
T ss_pred             cceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc-CCCCeEEeecCCccEEEeechhhhhh
Confidence            788899999999999999999999975432   23456777543  4567899 78999999999999999999999999


Q ss_pred             eeecccccceeEEEEcCCCe-EEEEcC
Q psy17243        231 HFLAGHLGCVTCVKLAGDGT-VAMSDL  256 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~~dg~-~~~~~~  256 (392)
                      ..++.|.+++..+.|+|... .++++.
T Consensus       468 ~~lkah~~~ci~v~wHP~e~Skvat~~  494 (503)
T KOG0282|consen  468 SKLKAHDQPCIGVDWHPVEPSKVATCG  494 (503)
T ss_pred             hccccCCcceEEEEecCCCcceeEecc
Confidence            99999999999999999543 444443

>KOG0281|consensus

Probab=100.00  E-value=2.3e-34  Score=228.71  Aligned_cols=222  Identities=26%  Similarity=0.496  Sum_probs=195.8

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeee
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY  104 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  104 (392)
                      ....|+|+.+.  ...+++|..|++|+|||.++..+.+.+.+|.+.|.|+.|.  .+.|++|+.|.+|++||.++++++.
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence            45679999885  4469999999999999999999999999999999999994  5699999999999999999999988


Q ss_pred             ecccc---eeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEc
Q psy17243        105 SALGP---SKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV  181 (392)
Q Consensus       105 ~~~~~---~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  181 (392)
                      .+..+   +..+.|  +..++++++.|..+.+||+.............+|...|+.+.|+  .+++++++.|.+|++|++
T Consensus       272 tlihHceaVLhlrf--~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~  347 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRF--SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST  347 (499)
T ss_pred             HHhhhcceeEEEEE--eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence            76654   344445  45689999999999999998776666666677999999999995  669999999999999999


Q ss_pred             CCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcC--------CCeEEE
Q psy17243        182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAG--------DGTVAM  253 (392)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--------dg~~~~  253 (392)
                      .+++.++.+.+|...|.|+.+.   +.++++|+.|.+|++||+..|.++..+++|+.-|.++.|..        ||++-+
T Consensus       348 st~efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikv  424 (499)
T KOG0281|consen  348 STCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV  424 (499)
T ss_pred             cceeeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEE
Confidence            9999999999999999998875   89999999999999999999999999999999999999964        677777


Q ss_pred             EcCC
Q psy17243        254 SDLP  257 (392)
Q Consensus       254 ~~~~  257 (392)
                      |++.
T Consensus       425 Wdl~  428 (499)
T KOG0281|consen  425 WDLQ  428 (499)
T ss_pred             Eecc
Confidence            7653

>KOG0313|consensus

Probab=100.00  E-value=1.3e-32  Score=220.98  Aligned_cols=251  Identities=24%  Similarity=0.403  Sum_probs=211.6

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCC---CeEEEEeCCCeEEEEeCCCCce----eEEecccccceEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNS---IFAVSGSEDNTAKVWGLTLGSV----VSTFKSHQSTILA   73 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~   73 (392)
                      ||+.||.+++||.. |+...++.+|.++|.+++|.-..   ..|++++.|.++++|.++.++.    ++.-++|+..|.+
T Consensus       120 tgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~s  198 (423)
T KOG0313|consen  120 TGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDS  198 (423)
T ss_pred             EeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeE
Confidence            68999999999965 89999999999999988885433   3599999999999999987753    3344589999999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCc-------------------------e---eeeecccceeEEEEeCCCCEEEEe
Q psy17243         74 VAVLSDSRRVVTSDKAGVIAVWVADNA-------------------------Q---LLYSALGPSKCLTVTHNMKYIVSG  125 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~d~~i~iwd~~~~-------------------------~---~~~~~~~~~~~~~~~~~~~~l~~~  125 (392)
                      +...+++..+++|+.|..|++|+..+.                         .   .+..+..++..+.|++ ...++++
T Consensus       199 Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~  277 (423)
T KOG0313|consen  199 VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSV  277 (423)
T ss_pred             EEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEee
Confidence            999999999999999999999983211                         0   1223345677888887 7789999


Q ss_pred             cCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe---EEEEEecCCCceeEEEE
Q psy17243        126 DGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK---LAQVLVGHTDHVSCVAV  202 (392)
Q Consensus       126 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~  202 (392)
                      +.|.+|+.||+.++.....    ......+.++.++|..++|++|+.|..|++||.+++.   ..+.+.+|+..|.++.|
T Consensus       278 SwDHTIk~WDletg~~~~~----~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw  353 (423)
T KOG0313|consen  278 SWDHTIKVWDLETGGLKST----LTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW  353 (423)
T ss_pred             cccceEEEEEeecccceee----eecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec
Confidence            9999999999986544432    2456789999999999999999999999999998863   45778999999999999


Q ss_pred             ecCCCcEEEEecCCCeEEEEECCCCc-eeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        203 AVTNKSLVVSGSKDSNLIVWDMETGG-EEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       203 ~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      +|.+..+|++++.|+++++||+++.+ ++..+.+|...|.++.|+. +..++++..+
T Consensus       354 sp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD  409 (423)
T KOG0313|consen  354 SPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGAD  409 (423)
T ss_pred             CCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCc
Confidence            99999999999999999999999988 9999999999999999985 4556666544

>KOG0306|consensus

Probab=100.00  E-value=8.1e-33  Score=240.17  Aligned_cols=260  Identities=20%  Similarity=0.303  Sum_probs=233.4

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCE
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      +..+.|++|+..+.+.++++...  .+.+..|.|.++++++|...|.+.+||+.+...+.+++.|.+.|.+++.+||++.
T Consensus       391 ga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g  468 (888)
T KOG0306|consen  391 GAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKG  468 (888)
T ss_pred             cCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCc
Confidence            45688999999999999999743  8999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCc--------e-------eeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCccee
Q psy17243         83 VVTSDKAGVIAVWVADNA--------Q-------LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERF  147 (392)
Q Consensus        83 l~~~~~d~~i~iwd~~~~--------~-------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  147 (392)
                      +++|+.|.+|++||..-.        +       ....+...+.|+.++||+++|+++--|.++++|-+.+   ......
T Consensus       469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt---lKFfls  545 (888)
T KOG0306|consen  469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT---LKFFLS  545 (888)
T ss_pred             eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc---eeeeee
Confidence            999999999999987421        1       1234456788999999999999999999999998873   333444


Q ss_pred             eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        148 TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      ..+|.-||.|+.++||++++++|+.|.+|++|-+.-|.+-+.+.+|.+.|.++.|. |...++++++.|+.|+-||-.+.
T Consensus       546 LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~-P~~~~FFt~gKD~kvKqWDg~kF  624 (888)
T KOG0306|consen  546 LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL-PKTHLFFTCGKDGKVKQWDGEKF  624 (888)
T ss_pred             ecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc-ccceeEEEecCcceEEeechhhh
Confidence            56899999999999999999999999999999999999999999999999999999 57888899999999999999999


Q ss_pred             ceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCcc
Q psy17243        228 GEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPL  268 (392)
Q Consensus       228 ~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~  268 (392)
                      +.++.+.+|...|.+++.+|+|.+++++..+..+..+.+.-
T Consensus       625 e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  625 EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            99999999999999999999999999998877666555444

>KOG0266|consensus

Probab=100.00  E-value=2.9e-32  Score=243.69  Aligned_cols=236  Identities=22%  Similarity=0.406  Sum_probs=205.9

Q ss_pred             eecc-CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc--eeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEc
Q psy17243         21 TMEG-HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA   97 (392)
Q Consensus        21 ~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   97 (392)
                      .+.. |...|.++.|+++|+++++++.|+.+++|+....+  ....+.+|...|.+++|+|+++++++++.|++|++||+
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence            3434 47889999999999999999999999999998887  77788889999999999999999999999999999999


Q ss_pred             -CCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC
Q psy17243         98 -DNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD  173 (392)
Q Consensus        98 -~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  173 (392)
                       ..+..++.   +...+.+++|+|+++.+++|+.|+.|++||+++   ........+|...|++++|++++++|++++.|
T Consensus       233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---GECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC---CeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence             44455554   455789999999999999999999999999985   44555666899999999999999999999999


Q ss_pred             CcEEEEEcCCCe--EEEEEecCCCc--eeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccc---eeEEEEc
Q psy17243        174 MSLKVWQVVGGK--LAQVLVGHTDH--VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGC---VTCVKLA  246 (392)
Q Consensus       174 g~i~i~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~  246 (392)
                      +.|++||+.++.  +...+..+...  +++++|+ +++.+++++..|+.+++||+..++.+..+.+|...   +.+...+
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~  388 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS  388 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEEC-CCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence            999999999998  56777766655  9999999 88999999999999999999999999999988874   4455667


Q ss_pred             CCCeEEEEcCCCCC
Q psy17243        247 GDGTVAMSDLPPSR  260 (392)
Q Consensus       247 ~dg~~~~~~~~~~~  260 (392)
                      +++++++++..+..
T Consensus       389 ~~~~~i~sg~~d~~  402 (456)
T KOG0266|consen  389 TGGKLIYSGSEDGS  402 (456)
T ss_pred             CCCCeEEEEeCCce
Confidence            89999999875543

>KOG1539|consensus

Probab=100.00  E-value=7.3e-32  Score=236.80  Aligned_cols=367  Identities=16%  Similarity=0.250  Sum_probs=269.4

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      |+.+|.+.+|++.+++.+.+++++...|+++.=+|--..+|.|..+|+|.+++++.++.+.+++...++|+++.|.-||+
T Consensus       178 Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~  257 (910)
T KOG1539|consen  178 GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN  257 (910)
T ss_pred             eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC
Confidence            78899999999999999999999999999999999888999999999999999999999999995569999999999987


Q ss_pred             E-EEEEeCCCeEEEEEcCCceeeeec----ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCC-CCcceeeeccccce
Q psy17243         82 R-VVTSDKAGVIAVWVADNAQLLYSA----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTH-KDDERFTVSHSEEI  155 (392)
Q Consensus        82 ~-l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~v  155 (392)
                      . +++++..|.+.+||++..+.+...    .+.+....+-|....+++++.|+.+++|=.+++.. ...++...+|..+.
T Consensus       258 p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp  337 (910)
T KOG1539|consen  258 PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP  337 (910)
T ss_pred             eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence            5 566667799999999998775543    35678888999999999999999999886654433 34455667888899


Q ss_pred             EEEEEE-cCCCEEEEeeCCCcEEEEEcCC---------------------------------------------------
Q psy17243        156 TCFTVT-WDSQYLITGSRDMSLKVWQVVG---------------------------------------------------  183 (392)
Q Consensus       156 ~~~~~~-~~~~~l~~~~~dg~i~i~d~~~---------------------------------------------------  183 (392)
                      .|+.|. .++..+.+++.|++++.+++..                                                   
T Consensus       338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~  417 (910)
T KOG1539|consen  338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA  417 (910)
T ss_pred             hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence            999887 5677888888888777765521                                                   


Q ss_pred             --------------CeE-EEEEe-----cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee---cccccce
Q psy17243        184 --------------GKL-AQVLV-----GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL---AGHLGCV  240 (392)
Q Consensus       184 --------------~~~-~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v  240 (392)
                                    ... .+.+.     .....+++++.+ ..|++.+.|...|.|-+|++.+|-....+   +.|.++|
T Consensus       418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V  496 (910)
T KOG1539|consen  418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEV  496 (910)
T ss_pred             ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcccCeeecccccCccccCce
Confidence                          000 00010     012457788888 78999999999999999999999888887   5899999


Q ss_pred             eEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecc
Q psy17243        241 TCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIP  320 (392)
Q Consensus       241 ~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~  320 (392)
                      +.++...-++.++++..++-...+...-..+..          .-..++....+.......     .++.+-+|..+.+.
T Consensus       497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~----------~l~l~~~~~~iv~hr~s~-----l~a~~~ddf~I~vv  561 (910)
T KOG1539|consen  497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK----------SLRLGSSITGIVYHRVSD-----LLAIALDDFSIRVV  561 (910)
T ss_pred             eEEEecCCCceEEEccCcceEEEEecCCcceee----------eeccCCCcceeeeeehhh-----hhhhhcCceeEEEE
Confidence            999999988888887655443332221111111          001122211111111111     12223333333332


Q ss_pred             e-------------eccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCcc
Q psy17243        321 I-------------KDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPV  387 (392)
Q Consensus       321 ~-------------~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~  387 (392)
                      +             .......+|||||++|+ +++.|++||+||+.++...    -.+.......++.|||.|++|||..
T Consensus       562 D~~t~kvvR~f~gh~nritd~~FS~DgrWli-sasmD~tIr~wDlpt~~lI----D~~~vd~~~~sls~SPngD~LAT~H  636 (910)
T KOG1539|consen  562 DVVTRKVVREFWGHGNRITDMTFSPDGRWLI-SASMDSTIRTWDLPTGTLI----DGLLVDSPCTSLSFSPNGDFLATVH  636 (910)
T ss_pred             EchhhhhhHHhhccccceeeeEeCCCCcEEE-EeecCCcEEEEeccCccee----eeEecCCcceeeEECCCCCEEEEEE
Confidence            2             11222229999999999 9999999999999998872    2233444566699999999999887


Q ss_pred             cc
Q psy17243        388 DE  389 (392)
Q Consensus       388 ~d  389 (392)
                      .|
T Consensus       637 vd  638 (910)
T KOG1539|consen  637 VD  638 (910)
T ss_pred             ec
Confidence            76

>KOG1407|consensus

Probab=100.00  E-value=2.3e-31  Score=203.63  Aligned_cols=253  Identities=15%  Similarity=0.244  Sum_probs=224.0

Q ss_pred             CCccCCeEEEEECCCccceee--eccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEe
Q psy17243          1 MGGMDCLVNVWQMNSHELQST--MEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVL   77 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~   77 (392)
                      +|+.|+++.+|+++..+....  .++|.+.|-.++|+| +...+++++.|.+|++||+..++++.......+. .-+.|+
T Consensus        37 sgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~ws  115 (313)
T KOG1407|consen   37 SGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWS  115 (313)
T ss_pred             ecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEc
Confidence            478999999999987765544  567999999999998 5678999999999999999999999988854444 568899


Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCceeeeecc--cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         78 SDSRRVVTSDKAGVIAVWVADNAQLLYSAL--GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        78 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      |+|+++++++.|..|...|.++.+.....+  ..+..++|+.++++++.....|.|.|....   ..+.+....+|....
T Consensus       116 p~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp---sLkpv~si~AH~snC  192 (313)
T KOG1407|consen  116 PDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP---SLKPVQSIKAHPSNC  192 (313)
T ss_pred             CCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc---ccccccccccCCcce
Confidence            999999999999999999999998876544  467788999888888888888999998876   444455566899999


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      .|+.|+|+|++|++|+.|..+.+||+...-+++.+..+.-+|..+.|+ .++++|+++++|..|-|=++++|..+..++ 
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS-~dg~~lASaSEDh~IDIA~vetGd~~~eI~-  270 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS-HDGRMLASASEDHFIDIAEVETGDRVWEIP-  270 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec-cCcceeeccCccceEEeEecccCCeEEEee-
Confidence            999999999999999999999999999999999999999999999999 899999999999999999999999999987 


Q ss_pred             cccceeEEEEcCCCeEEEEcCCCC
Q psy17243        236 HLGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       236 ~~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      +.++...++|+|...+|+.+.+++
T Consensus       271 ~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  271 CEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             ccCCceeEEecCCCceeeEEecCC
Confidence            789999999999999999887553

>KOG0647|consensus

Probab=100.00  E-value=1.2e-31  Score=209.20  Aligned_cols=253  Identities=17%  Similarity=0.257  Sum_probs=213.3

Q ss_pred             CCccCCeEEEEECCC-ccce-eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEec
Q psy17243          1 MGGMDCLVNVWQMNS-HELQ-STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~   78 (392)
                      +|+.||+||+|+++. +... +....|.++|.+++|+.+|..+++|+.|+.+++||+.+++ ...+..|..+|..+.|-+
T Consensus        45 A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~  123 (347)
T KOG0647|consen   45 AGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVP  123 (347)
T ss_pred             ecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEec
Confidence            478899999999976 3333 4456799999999999999999999999999999999995 456667999999999988


Q ss_pred             CCC--EEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         79 DSR--RVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        79 ~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      ...  .|++|+.|.+|+.||.+....+.....|-.+-+..-...+++++..++.|.+|+++.+.... ........-.++
T Consensus       124 ~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~-k~~~SpLk~Q~R  202 (347)
T KOG0647|consen  124 GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEF-KRIESPLKWQTR  202 (347)
T ss_pred             CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchh-hhhcCcccceee
Confidence            765  89999999999999999999999988888888888888899999999999999997543322 122223456789


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCC--eEEEEEecCCC---------ceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGG--KLAQVLVGHTD---------HVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      |++..++....+.|+-+|.+.|..+..+  +.-..++.|..         .|+.|+|+| ....|++++.||++.+||-+
T Consensus       203 ~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  203 CVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             EEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecch
Confidence            9999999888899999999999998776  33344555542         478899995 56678889999999999999


Q ss_pred             CCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        226 TGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       226 ~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ....+...+.|..+|++..|+.+|.+++.++
T Consensus       282 ar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  282 ARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             hhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            8888889999999999999999999999875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1e-30  Score=250.74  Aligned_cols=255  Identities=14%  Similarity=0.260  Sum_probs=209.9

Q ss_pred             CCccCCeEEEEECCCc----c----ceeeeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecccccce
Q psy17243          1 MGGMDCLVNVWQMNSH----E----LQSTMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTI   71 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~----~----~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v   71 (392)
                      ||+.|+.|+||++.+.    .    ....+. +...|.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|...|
T Consensus       500 tgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V  578 (793)
T PLN00181        500 TAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRV  578 (793)
T ss_pred             EEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCE
Confidence            5789999999997542    1    122333 456899999988 57899999999999999999999999999999999


Q ss_pred             EEEEEec-CCCEEEEEeCCCeEEEEEcCCceeeeecc--cceeEEEEe-CCCCEEEEecCCCcEEEEeCCCCCCCCccee
Q psy17243         72 LAVAVLS-DSRRVVTSDKAGVIAVWVADNAQLLYSAL--GPSKCLTVT-HNMKYIVSGDGDNSLRIWPTSPQTHKDDERF  147 (392)
Q Consensus        72 ~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  147 (392)
                      ++++|+| ++.+|++++.|+.|++||+.++..+..+.  ..+.++.|+ +++.+|++|+.|+.|++||++....  ....
T Consensus       579 ~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--~~~~  656 (793)
T PLN00181        579 WSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCT  656 (793)
T ss_pred             EEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--cceE
Confidence            9999997 78899999999999999999887765443  366788885 5799999999999999999974321  2334


Q ss_pred             eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC------CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEE
Q psy17243        148 TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG------GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV  221 (392)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  221 (392)
                      ..+|...|.++.|. ++.+|++++.|++|++||++.      .+++..+.+|...+.+++|+ +++.+|++|+.|+.|++
T Consensus       657 ~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s-~~~~~lasgs~D~~v~i  734 (793)
T PLN00181        657 MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS-VSDGYIATGSETNEVFV  734 (793)
T ss_pred             ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc-CCCCEEEEEeCCCEEEE
Confidence            45788999999997 678999999999999999974      35778899999999999999 56789999999999999


Q ss_pred             EECCCCceeeee-------------cccccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        222 WDMETGGEEHFL-------------AGHLGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       222 wd~~~~~~~~~~-------------~~~~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      |+...+.++..+             ..+...|.+++|+|++..++++..++.
T Consensus       735 w~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~  786 (793)
T PLN00181        735 YHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN  786 (793)
T ss_pred             EECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence            998766543221             234567999999999999999875543

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=4.3e-30  Score=229.67  Aligned_cols=245  Identities=13%  Similarity=0.143  Sum_probs=191.4

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCc--------eeEEecccccce
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGS--------VVSTFKSHQSTI   71 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v   71 (392)
                      .|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++.        .+..+.+|...|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            3678899999998877788889999999999999996 7899999999999999997642        344678899999


Q ss_pred             EEEEEecCCCEE-EEEeCCCeEEEEEcCCceeeeec--ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee
Q psy17243         72 LAVAVLSDSRRV-VTSDKAGVIAVWVADNAQLLYSA--LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        72 ~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      .+++|+|++..+ ++++.|+.|++||+++++.+..+  ...+.+++|+++|.+|++++.|+.|++||++++..   ....
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~---i~tl  205 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI---ASSF  205 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE---EEEE
Confidence            999999998764 68899999999999998765443  45788999999999999999999999999985433   2334


Q ss_pred             eccccceEE-----EEEEcCCCEEEEeeCCC----cEEEEEcCC-CeEEEEEecCC--CceeEEEEecCCCcEEEEecCC
Q psy17243        149 VSHSEEITC-----FTVTWDSQYLITGSRDM----SLKVWQVVG-GKLAQVLVGHT--DHVSCVAVAVTNKSLVVSGSKD  216 (392)
Q Consensus       149 ~~~~~~v~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d  216 (392)
                      ..|.+.+.+     ..|++++.+|++++.++    .|+|||+++ .+++..+..+.  +.+. ..+.++.+.++++|+.|
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~-p~~D~~tg~l~lsGkGD  284 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI-PHYDESTGLIYLIGKGD  284 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE-EeeeCCCCCEEEEEECC
Confidence            466655433     23457888999888764    799999995 55665543222  2222 24555778899999999


Q ss_pred             CeEEEEECCCCceeeeec--ccccceeEEEEcCCCe
Q psy17243        217 SNLIVWDMETGGEEHFLA--GHLGCVTCVKLAGDGT  250 (392)
Q Consensus       217 g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~dg~  250 (392)
                      +.|++|++..+. +..+.  .+..++.+++|.|...
T Consensus       285 ~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        285 GNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             CeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence            999999998764 23222  2556788999998644

>KOG0288|consensus

Probab=100.00  E-value=4e-32  Score=220.37  Aligned_cols=252  Identities=21%  Similarity=0.390  Sum_probs=218.6

Q ss_pred             CCccCCeEEEEECCCcc--ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEec
Q psy17243          1 MGGMDCLVNVWQMNSHE--LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~   78 (392)
                      ||+.|..|++|++...+  .+.++.+..++|+++.|.++++++++++.|+.+++|++...+...++.+|.+.|+++.|..
T Consensus       192 tgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~  271 (459)
T KOG0288|consen  192 TGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL  271 (459)
T ss_pred             hcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc
Confidence            68999999999987665  7888999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEE
Q psy17243         79 DSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF  158 (392)
Q Consensus        79 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~  158 (392)
                      ....+++|+.|.+|++||+....+..+......|..+--....+++|..|++|++||++......    .....+.|+++
T Consensus       272 ~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~----sv~~gg~vtSl  347 (459)
T KOG0288|consen  272 SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTR----SVPLGGRVTSL  347 (459)
T ss_pred             cccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceee----EeecCcceeeE
Confidence            77779999999999999999998888777655554444447789999999999999997544332    22345699999


Q ss_pred             EEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecC----CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec
Q psy17243        159 TVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH----TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA  234 (392)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  234 (392)
                      ..++++..|++++.|.++.++|+++.+..+.+.+.    ....+.+.|+ |++.|+++|+.||.|+||++.++++...+.
T Consensus       348 ~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS-pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~  426 (459)
T KOG0288|consen  348 DLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS-PDGSYVAAGSADGSVYIWSVFTGKLEKVLS  426 (459)
T ss_pred             eeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC-CCCceeeeccCCCcEEEEEccCceEEEEec
Confidence            99999999999999999999999999888777542    2347889999 789999999999999999999999988877


Q ss_pred             cccc--ceeEEEEcCCCeEEEEcCC
Q psy17243        235 GHLG--CVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       235 ~~~~--~v~~~~~~~dg~~~~~~~~  257 (392)
                      ....  .|++++|+|.|..+++...
T Consensus       427 ~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  427 LSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             cCCCCcceEEEEEcCCCchhhcccC
Confidence            6544  5999999999999998764

>KOG0283|consensus

Probab=100.00  E-value=1.6e-31  Score=235.56  Aligned_cols=242  Identities=18%  Similarity=0.247  Sum_probs=198.6

Q ss_pred             eeeec-cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC----------------------------------------
Q psy17243         19 QSTME-GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL----------------------------------------   57 (392)
Q Consensus        19 ~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~----------------------------------------   57 (392)
                      .+.+. .|.+.|+++.|++||+|||+|+.||.|+||.+..                                        
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34455 7999999999999999999999999999997643                                        


Q ss_pred             --------------------CceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee--cccceeEEEE
Q psy17243         58 --------------------GSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS--ALGPSKCLTV  115 (392)
Q Consensus        58 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~  115 (392)
                                          .++++.+.+|.+.|..+.|+.+ ++|++++.|.+|++|++...+++..  +..-++|++|
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF  417 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF  417 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence                                0233445789999999999965 5999999999999999999988764  5668999999


Q ss_pred             eC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec--
Q psy17243        116 TH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG--  192 (392)
Q Consensus       116 ~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  192 (392)
                      +| |.++|++|+-|+.++||++.   ..+... -.....-|++++|.|||++.++|+.+|.+++|+....+......-  
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~---d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSIS---DKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             cccCCCcEeecccccceEEeecC---cCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence            99 88999999999999999995   223222 234458899999999999999999999999999988776554321  


Q ss_pred             C------CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccc--ceeEEEEcCCCeEEEEcCCCCCCCCC
Q psy17243        193 H------TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG--CVTCVKLAGDGTVAMSDLPPSRPAGP  264 (392)
Q Consensus       193 ~------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~dg~~~~~~~~~~~~~~~  264 (392)
                      |      ...|+.+.|.|.+...++..+.|..|||||.++.+++..++++..  .-....|+.||++++++.++.....|
T Consensus       494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW  573 (712)
T KOG0283|consen  494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW  573 (712)
T ss_pred             ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence            1      227999999977776677778999999999999999999987654  34577899999999999877655444


Q ss_pred             C
Q psy17243        265 K  265 (392)
Q Consensus       265 ~  265 (392)
                      .
T Consensus       574 ~  574 (712)
T KOG0283|consen  574 K  574 (712)
T ss_pred             e
Confidence            3

>KOG1446|consensus

Probab=100.00  E-value=1.6e-29  Score=198.97  Aligned_cols=254  Identities=15%  Similarity=0.207  Sum_probs=220.0

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeC--CCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSE--DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      .+.|.++++||..+++.++++..++-.|..++|......++.++.  |.+|+..++.+.+.++.+.+|...|.+++.+|-
T Consensus        32 ss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~  111 (311)
T KOG1446|consen   32 SSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPK  111 (311)
T ss_pred             ecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCC
Confidence            467889999999999999999988889999999887776776666  889999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeeccc-ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee--eccccceE
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYSALG-PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT--VSHSEEIT  156 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~v~  156 (392)
                      +..+++++.|++|++||++..++...+.. .-...++.|+|-++|++.....|++||++.-.......+.  .+...+.+
T Consensus       112 ~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~  191 (311)
T KOG1446|consen  112 DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT  191 (311)
T ss_pred             CCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcccee
Confidence            99999999999999999998777655544 4567899999999999999889999999865443332222  24467889


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCce---eEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHV---SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                      .+.|+|||++|+.+...+.+++.|.-+|.....+..+...-   -..+|. |+++++++|+.||+|.+|++++++.+..+
T Consensus       192 ~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft-Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~  270 (311)
T KOG1446|consen  192 DLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT-PDSKFVLSGSDDGTIHVWNLETGKKVAVL  270 (311)
T ss_pred             eeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC-CCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence            99999999999999999999999999999888887665432   355677 88999999999999999999999999999


Q ss_pred             cc-cccceeEEEEcCCCeEEEEcC
Q psy17243        234 AG-HLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       234 ~~-~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .+ +.+++.++.|+|--.+++++.
T Consensus       271 ~~~~~~~~~~~~fnP~~~mf~sa~  294 (311)
T KOG1446|consen  271 RGPNGGPVSCVRFNPRYAMFVSAS  294 (311)
T ss_pred             cCCCCCCccccccCCceeeeeecC
Confidence            88 688999999999888887764

>KOG0643|consensus

Probab=100.00  E-value=4.1e-31  Score=202.85  Aligned_cols=254  Identities=21%  Similarity=0.285  Sum_probs=211.6

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +++.|.++.||-..+|+.+.++.+|++.|+|+....+.+++++|+.|.++++||+++|+++..++ ...+|..+.|+++|
T Consensus        27 scaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g  105 (327)
T KOG0643|consen   27 SCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG  105 (327)
T ss_pred             EecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC
Confidence            46789999999988999999999999999999999999999999999999999999999999998 68899999999999


Q ss_pred             CEEEEEeC-----CCeEEEEEcCCc-------eee---eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcc
Q psy17243         81 RRVVTSDK-----AGVIAVWVADNA-------QLL---YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        81 ~~l~~~~~-----d~~i~iwd~~~~-------~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  145 (392)
                      ++++....     .+.|.++|++..       ++.   ......++.+.|.|-++.|++|..+|.|..||++++..  ..
T Consensus       106 n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~--~v  183 (327)
T KOG0643|consen  106 NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE--LV  183 (327)
T ss_pred             cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce--ee
Confidence            98887754     467999998833       322   23345678899999999999999999999999985433  22


Q ss_pred             eeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCe-EEEEEC
Q psy17243        146 RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSN-LIVWDM  224 (392)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~  224 (392)
                      .....|...|+.+++++|..++++++.|.+-++||+++.+.++++. -..+|++.+++|..+..++.|+.+-. |.-=+.
T Consensus       184 ~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~  262 (327)
T KOG0643|consen  184 DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTST  262 (327)
T ss_pred             echhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecc
Confidence            3334688899999999999999999999999999999999999987 46799999999666655555554421 222223


Q ss_pred             CCC------------ceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        225 ETG------------GEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       225 ~~~------------~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      +.+            +.+..+++|-++|++++|+|||+..+++.++
T Consensus       263 r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGED  308 (327)
T KOG0643|consen  263 RAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGED  308 (327)
T ss_pred             cccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCC
Confidence            333            4566788999999999999999999998755

>KOG0640|consensus

Probab=100.00  E-value=1.1e-31  Score=210.31  Aligned_cols=234  Identities=16%  Similarity=0.279  Sum_probs=194.4

Q ss_pred             eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC------------C------ceeEEecccccceEEEEEecCCC
Q psy17243         20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL------------G------SVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus        20 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      ..+..|++++.+.+|+|||.++++|+.|..|+|.|++.            +      -.++++..|..+|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            34567999999999999999999999999999999861            1      24677888999999999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeee-----cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLYS-----ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      .|++++.|++|+++|.......+.     -..++.++.|+|.|.++++|..-..+++||+++.+..........|...|+
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~  265 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT  265 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence            999999999999999987644332     235889999999999999999999999999986654443334457899999


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe-cCC-CceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV-GHT-DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA  234 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  234 (392)
                      ++.+++.+++.++++.||.|++||--+++++..+. .|. ..|.+..|. .+++++++.+.|..+++|.+.+++.+..+.
T Consensus       266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWEISTGRMLKEYT  344 (430)
T ss_pred             EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence            99999999999999999999999999999988774 454 467888888 899999999999999999999999998876


Q ss_pred             ccc-----cceeEEEEcCCCeEEEE
Q psy17243        235 GHL-----GCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       235 ~~~-----~~v~~~~~~~dg~~~~~  254 (392)
                      +-.     .--+...|+....+++.
T Consensus       345 GAg~tgrq~~rtqAvFNhtEdyVl~  369 (430)
T KOG0640|consen  345 GAGTTGRQKHRTQAVFNHTEDYVLF  369 (430)
T ss_pred             cCCcccchhhhhhhhhcCccceEEc
Confidence            531     12234445555555544

>KOG1407|consensus

Probab=99.98  E-value=5.2e-31  Score=201.63  Aligned_cols=234  Identities=16%  Similarity=0.226  Sum_probs=205.6

Q ss_pred             eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEE--ecccccceEEEEEecC-CCEEEEEeCCCeEEEEE
Q psy17243         20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST--FKSHQSTILAVAVLSD-SRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        20 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd   96 (392)
                      +.+++|..+|.+++|+.+|..|++|+.|+++.+|+++..+....  ..+|.+.|-.++|+|. ...+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            56778999999999999999999999999999999988765543  4578889999999875 46899999999999999


Q ss_pred             cCCceeeeeccc--ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCC
Q psy17243         97 ADNAQLLYSALG--PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM  174 (392)
Q Consensus        97 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  174 (392)
                      ++.+++......  .-.-+.|+|++.+++++..|..|.+.|.++.+.....    .....+.-++|+.++.+++.....|
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~----~~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE----QFKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh----cccceeeeeeecCCCCEEEEecCCc
Confidence            999998876544  5567899999999999999999999999754433322    3345678888998888888888789


Q ss_pred             cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEE
Q psy17243        175 SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                      +|.|......+++..+++|.....||.|+ |++++|++|+.|-.+.+||++..-+++.+..+.-+|+.++|+.||+++++
T Consensus       170 ~v~ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS  248 (313)
T KOG1407|consen  170 CVEILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS  248 (313)
T ss_pred             eEEEEeccccccccccccCCcceEEEEEC-CCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeec
Confidence            99999999999999999999999999999 78999999999999999999999999999999999999999999999999


Q ss_pred             cCCC
Q psy17243        255 DLPP  258 (392)
Q Consensus       255 ~~~~  258 (392)
                      ++++
T Consensus       249 aSED  252 (313)
T KOG1407|consen  249 ASED  252 (313)
T ss_pred             cCcc
Confidence            8754

>KOG0289|consensus

Probab=99.98  E-value=4.6e-30  Score=209.73  Aligned_cols=253  Identities=17%  Similarity=0.245  Sum_probs=223.4

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ||+.|..+.++|..+.+.+..++||...|+.+.|+|+...+++++.|-.|+||.............|+.+|+.+..+|.|
T Consensus       236 TGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg  315 (506)
T KOG0289|consen  236 TGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG  315 (506)
T ss_pred             ecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCC
Confidence            68999999999999999999999999999999999999999999999999999999888888888999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeeccc-----ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSALG-----PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      .||++++.|++..+.|++++..+.....     ...+..|+|||..|.+|..|+.|++||+.++.   ....+.+|.++|
T Consensus       316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~---~~a~Fpght~~v  392 (506)
T KOG0289|consen  316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT---NVAKFPGHTGPV  392 (506)
T ss_pred             cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc---ccccCCCCCCce
Confidence            9999999999999999999988765443     47899999999999999999999999998554   344455799999


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecC-CCceeEEEEecCCCcEEEEecCCCeEEEEECC--CCceeee
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH-TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME--TGGEEHF  232 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~  232 (392)
                      ..++|+.+|-+|++++.|+.|++||+|..+..+++.-. ..++.++.|. ..+.+|+.++.|=.|++++-.  +..++..
T Consensus       393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD-~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~  471 (506)
T KOG0289|consen  393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFD-QSGTYLGIAGSDLQVYICKKKTKSWTEIKE  471 (506)
T ss_pred             eEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEc-CCCCeEEeecceeEEEEEecccccceeeeh
Confidence            99999999999999999999999999998877776533 2368999999 778888888777666666633  4567778


Q ss_pred             ecccccceeEEEEcCCCeEEEEcCC
Q psy17243        233 LAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       233 ~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      +..|.+..+.+.|....++++++..
T Consensus       472 ~~~~sg~st~v~Fg~~aq~l~s~sm  496 (506)
T KOG0289|consen  472 LADHSGLSTGVRFGEHAQYLASTSM  496 (506)
T ss_pred             hhhcccccceeeecccceEEeeccc
Confidence            8889999999999999999998763

>KOG0310|consensus

Probab=99.98  E-value=3.2e-30  Score=213.67  Aligned_cols=250  Identities=18%  Similarity=0.317  Sum_probs=215.7

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC-EE
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR-RV   83 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l   83 (392)
                      .-.+.+|+..+....+.+......|.++.|..||++|++|...|.|+|+|..+...+..+.+|..++..+.|+|+++ .+
T Consensus        47 S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l  126 (487)
T KOG0310|consen   47 SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTML  126 (487)
T ss_pred             ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEE
Confidence            34688999998888888888889999999999999999999999999999777777889999999999999999765 56


Q ss_pred             EEEeCCCeEEEEEcCCceeeee---cccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEE
Q psy17243         84 VTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFT  159 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~  159 (392)
                      ++|+.|+.+++||+.+......   +...+.|.+++| ++..+++|+.||.|++||++...   .......|..+|..+.
T Consensus       127 ~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg~pVe~vl  203 (487)
T KOG0310|consen  127 VSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHGCPVESVL  203 (487)
T ss_pred             EecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCCCceeeEE
Confidence            7788889999999999876434   445788999998 45689999999999999998543   4445568999999999


Q ss_pred             EEcCCCEEEEeeCCCcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccc
Q psy17243        160 VTWDSQYLITGSRDMSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG  238 (392)
Q Consensus       160 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (392)
                      +-|.|..+++++. ..+++||+.+| +.+..+..|...|+|+.+. .++..|++++-|+.|++||+.+.+.+..+. ..+
T Consensus       204 ~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~-s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~  280 (487)
T KOG0310|consen  204 ALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLA-SDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPG  280 (487)
T ss_pred             EcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEee-cCCceEeecccccceEEEEccceEEEEeee-ccc
Confidence            9999999998874 57999999855 5555666699999999999 678999999999999999999999888876 678


Q ss_pred             ceeEEEEcCCCeEEEEcCCCCC
Q psy17243        239 CVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       239 ~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      +|.+++.+||++.++.+..++-
T Consensus       281 pvLsiavs~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  281 PVLSIAVSPDDQTVVIGMSNGL  302 (487)
T ss_pred             ceeeEEecCCCceEEEecccce
Confidence            9999999999999999876643

>KOG0278|consensus

Probab=99.98  E-value=9.2e-32  Score=204.56  Aligned_cols=249  Identities=24%  Similarity=0.362  Sum_probs=216.5

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      ++.||.-.+-+-++|.-+.++.+|++.|++...+.+...-|+++.|-+-++||.-+|..+..+. |+.-|.+++|+.|.+
T Consensus        35 a~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~  113 (334)
T KOG0278|consen   35 ASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSN  113 (334)
T ss_pred             eccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccch
Confidence            5566666666778889999999999999999999998889999999999999999999999998 999999999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCcee----eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         82 RVVTSDKAGVIAVWVADNAQL----LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      +|++|+.+..+++||++..+.    +..+.+.+..+.|....+.++++..|+.|++||.+++...+.+    ....+|++
T Consensus       114 ~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL----~~~s~VtS  189 (334)
T KOG0278|consen  114 YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL----EFNSPVTS  189 (334)
T ss_pred             hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE----ecCCCCcc
Confidence            999999999999999987653    3456667888999999999999999999999999876554433    45688999


Q ss_pred             EEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee-ccc
Q psy17243        158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL-AGH  236 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~  236 (392)
                      +.++++|++|.++. .+.|.+||..+...++.+. -...|.+..++ |+..++++|+.|..++.||..++..+..+ ++|
T Consensus       190 lEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SASL~-P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh  266 (334)
T KOG0278|consen  190 LEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESASLH-PKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH  266 (334)
T ss_pred             eeeccCCCEEEEec-CceeEEeccccccceeecc-Ccccccccccc-CCCceEEecCcceEEEEEeccCCceeeecccCC
Confidence            99999998776654 6789999999999888876 35678888999 55589999999999999999999999886 899


Q ss_pred             ccceeEEEEcCCCeEEEEcCCC
Q psy17243        237 LGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       237 ~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      .++|.|+.|+|||...++++++
T Consensus       267 ~gpVhcVrFSPdGE~yAsGSED  288 (334)
T KOG0278|consen  267 FGPVHCVRFSPDGELYASGSED  288 (334)
T ss_pred             CCceEEEEECCCCceeeccCCC
Confidence            9999999999999998886533

>KOG0292|consensus

Probab=99.97  E-value=8.4e-31  Score=231.62  Aligned_cols=239  Identities=20%  Similarity=0.396  Sum_probs=211.7

Q ss_pred             eeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCc
Q psy17243         21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA  100 (392)
Q Consensus        21 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  100 (392)
                      .++..+..|..++|+|...+++++-..|.|++||.+-+.++..|..|+++|..++|+|....+++|+.|-.|++|+..+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            45556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEE
Q psy17243        101 QLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK  177 (392)
Q Consensus       101 ~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  177 (392)
                      +++.++.+   .+..+.|++.-.++++++.|.+|++|+..   ....+....+|...|.|..|+|....+++++-|.+|+
T Consensus        84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq---sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR  160 (1202)
T KOG0292|consen   84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ---SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR  160 (1202)
T ss_pred             eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc---CCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence            99887766   57899999999999999999999999997   4555666779999999999999999999999999999


Q ss_pred             EEEcCCCe-----------------------------EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        178 VWQVVGGK-----------------------------LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       178 i~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      +||+...+                             ..+.+.+|...|+-++|+ +.-.++++|+.|..|++|.+..-+
T Consensus       161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-CCcceEEecCCcceeeEEEecccc
Confidence            99984210                             123467899999999999 667899999999999999987654


Q ss_pred             --eeeeecccccceeEEEEcCCCeEEEEcCCCCCCCC
Q psy17243        229 --EEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAG  263 (392)
Q Consensus       229 --~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~  263 (392)
                        .+.+..+|.+.|.++-|+|...++++..+++.+..
T Consensus       240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV  276 (1202)
T KOG0292|consen  240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV  276 (1202)
T ss_pred             ceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence              45578899999999999999999999876655443

>KOG0275|consensus

Probab=99.97  E-value=6.9e-31  Score=207.29  Aligned_cols=280  Identities=22%  Similarity=0.286  Sum_probs=224.7

Q ss_pred             cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEe--------cccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF--------KSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      +.++.+-|..|+|||+||++|+.||.|.+||..+|+..+.+        .-+..+|.|+.|+.|...+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            35567889999999999999999999999999999765544        3477899999999999999999999999999


Q ss_pred             EcCCceeeeecc----cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee
Q psy17243         96 VADNAQLLYSAL----GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS  171 (392)
Q Consensus        96 d~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  171 (392)
                      .+++|++++.+.    ..+.|+.|+.|+..+++++.|..+++.-+.+++.   ++...+|.+.|+...|.++|.++++++
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~---LKEfrGHsSyvn~a~ft~dG~~iisaS  367 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC---LKEFRGHSSYVNEATFTDDGHHIISAS  367 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh---HHHhcCccccccceEEcCCCCeEEEec
Confidence            999999987654    5789999999999999999999999998875544   444558999999999999999999999


Q ss_pred             CCCcEEEEEcCCCeEEEEEec--CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc---cccceeEEEEc
Q psy17243        172 RDMSLKVWQVVGGKLAQVLVG--HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG---HLGCVTCVKLA  246 (392)
Q Consensus       172 ~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~  246 (392)
                      .||+|++|+.++.+++.+++.  ...+|+++...|.+...++.+...++|.|.++. |+.++.+..   ..+...++..+
T Consensus       368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS  446 (508)
T KOG0275|consen  368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS  446 (508)
T ss_pred             CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence            999999999999999988764  456789999998999999999999999999986 777777643   34567788899


Q ss_pred             CCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCC
Q psy17243        247 GDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVG  326 (392)
Q Consensus       247 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~  326 (392)
                      |-|.++....++.                   ..|.+....|.                       .+.+..+-. +..-
T Consensus       447 pkGewiYcigED~-------------------vlYCF~~~sG~-----------------------LE~tl~VhE-kdvI  483 (508)
T KOG0275|consen  447 PKGEWIYCIGEDG-------------------VLYCFSVLSGK-----------------------LERTLPVHE-KDVI  483 (508)
T ss_pred             CCCcEEEEEccCc-------------------EEEEEEeecCc-----------------------eeeeeeccc-cccc
Confidence            9999887754321                   12332222222                       222222211 1122


Q ss_pred             CCCCChhhhhhhcccChHHHHHHhh
Q psy17243        327 SQGLGPEQAALAQSQHFDQLEALWN  351 (392)
Q Consensus       327 ~~~~s~dg~~la~s~~~d~~i~~Wd  351 (392)
                      ..+.+|....|| +=++||.+++|.
T Consensus       484 Gl~HHPHqNllA-sYsEDgllKLWk  507 (508)
T KOG0275|consen  484 GLTHHPHQNLLA-SYSEDGLLKLWK  507 (508)
T ss_pred             ccccCcccchhh-hhcccchhhhcC
Confidence            225678888888 889999999994

>KOG0274|consensus

Probab=99.97  E-value=7.1e-30  Score=227.56  Aligned_cols=235  Identities=27%  Similarity=0.489  Sum_probs=210.8

Q ss_pred             CCccCCeEEEEECCCccceee-eccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNSHELQST-MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      +|+.|++|++||..++..+.. +.+|.+.|.++++...+.+|++|+.|.++++||..+|++...+.+|.+.|.++...  
T Consensus       223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--  300 (537)
T KOG0274|consen  223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--  300 (537)
T ss_pred             ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--
Confidence            478899999999999998888 99999999999998878899999999999999999999999999999999999885  


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      ...+++|+.|.+|++|++.++..+....   .++.++..+  +.++++|+.|+.|++||+.   ....+....+|...|.
T Consensus       301 ~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~---~~~cl~sl~gH~~~V~  375 (537)
T KOG0274|consen  301 PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR---TGKCLKSLSGHTGRVY  375 (537)
T ss_pred             CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh---hceeeeeecCCcceEE
Confidence            4578889999999999999998876544   577788777  8899999999999999998   4455556668999999


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      ++.+.+. .++++|+.|++|++||+++. +++..+.+|...+..+.+.   +++|++++.|++|++||..+++++..+.+
T Consensus       376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~---~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR---DNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             EEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc---cceeEeccccccEEEeecccCceeeeecc
Confidence            9987654 89999999999999999999 9999999999999877764   78999999999999999999999999998


Q ss_pred             -cccceeEEEEc
Q psy17243        236 -HLGCVTCVKLA  246 (392)
Q Consensus       236 -~~~~v~~~~~~  246 (392)
                       |...|..+++.
T Consensus       452 ~~~~~v~~l~~~  463 (537)
T KOG0274|consen  452 RHVGGVSALALG  463 (537)
T ss_pred             CCcccEEEeecC
Confidence             67888888876

>KOG0305|consensus

Probab=99.97  E-value=2e-29  Score=216.67  Aligned_cols=251  Identities=18%  Similarity=0.232  Sum_probs=219.7

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc-cccceEEEEEecCCCEE
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS-HQSTILAVAVLSDSRRV   83 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l   83 (392)
                      ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|-+++|.  +..+
T Consensus       196 g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~l  273 (484)
T KOG0305|consen  196 GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVL  273 (484)
T ss_pred             cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceE
Confidence            45799999999987776666689999999999999999999999999999999999999998 99999999997  6789


Q ss_pred             EEEeCCCeEEEEEcCCceeee----ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEE
Q psy17243         84 VTSDKAGVIAVWVADNAQLLY----SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFT  159 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~  159 (392)
                      .+|+.++.|..+|++..+...    .+...+..+.|++++.++++|+.|+.+.|||..   ..........|...|..++
T Consensus       274 ssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~---~~~p~~~~~~H~aAVKA~a  350 (484)
T KOG0305|consen  274 SSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL---SPEPKFTFTEHTAAVKALA  350 (484)
T ss_pred             EEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC---CccccEEEeccceeeeEee
Confidence            999999999999999876544    356678899999999999999999999999995   4455556668999999999


Q ss_pred             EEcC-CCEEEEee--CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEec-CCCeEEEEECCCCceeeeecc
Q psy17243        160 VTWD-SQYLITGS--RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS-KDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       160 ~~~~-~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      |+|- ..+||+|+  .|++|++||..+++.+..+. -...|..+.|++...+++.+-+ .++.|.||+..+.+.+..+.+
T Consensus       351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g  429 (484)
T KOG0305|consen  351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG  429 (484)
T ss_pred             eCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC
Confidence            9995 66888876  49999999999999988876 4678999999977767766644 577899999999999999999


Q ss_pred             cccceeEEEEcCCCeEEEEcCCCCCC
Q psy17243        236 HLGCVTCVKLAGDGTVAMSDLPPSRP  261 (392)
Q Consensus       236 ~~~~v~~~~~~~dg~~~~~~~~~~~~  261 (392)
                      |...|..++++|||..++++..+...
T Consensus       430 H~~RVl~la~SPdg~~i~t~a~DETl  455 (484)
T KOG0305|consen  430 HTSRVLYLALSPDGETIVTGAADETL  455 (484)
T ss_pred             CcceeEEEEECCCCCEEEEecccCcE
Confidence            99999999999999999998755433

>KOG0313|consensus

Probab=99.97  E-value=4.1e-30  Score=206.64  Aligned_cols=222  Identities=22%  Similarity=0.365  Sum_probs=195.9

Q ss_pred             CCccCCeEEEEECCCccce----eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC--------------------
Q psy17243          1 MGGMDCLVNVWQMNSHELQ----STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT--------------------   56 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~--------------------   56 (392)
                      +|+.|.++++|.++.++..    +..+||...|-++...+++..+++|+.|.+|+||+.+                    
T Consensus       164 sas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~  243 (423)
T KOG0313|consen  164 SASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR  243 (423)
T ss_pred             EecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence            5889999999998766433    3345999999999999999999999999999999932                    


Q ss_pred             -----CCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc--ceeEEEEeCCCCEEEEecCCC
Q psy17243         57 -----LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG--PSKCLTVTHNMKYIVSGDGDN  129 (392)
Q Consensus        57 -----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~  129 (392)
                           ++.++-.+.+|..+|.++.|++ ...+++++.|.+|+.||++++....+...  ...|+..+|..++|++|+.|.
T Consensus       244 ~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr  322 (423)
T KOG0313|consen  244 EKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDR  322 (423)
T ss_pred             hhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCC
Confidence                 1234567789999999999987 67899999999999999999988776654  678999999999999999999


Q ss_pred             cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCC-CEEEEeeCCCcEEEEEcCCCe-EEEEEecCCCceeEEEEecCCC
Q psy17243        130 SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS-QYLITGSRDMSLKVWQVVGGK-LAQVLVGHTDHVSCVAVAVTNK  207 (392)
Q Consensus       130 ~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~  207 (392)
                      .+++||.+.+..........+|...|.++.|+|.. .+|++++.|+++++||+++.+ ++..+.+|.+.|.++.|.  ++
T Consensus       323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~  400 (423)
T KOG0313|consen  323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EG  400 (423)
T ss_pred             ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CC
Confidence            99999999887777777778999999999999974 568899999999999999988 999999999999999997  67


Q ss_pred             cEEEEecCCCeEEEEECC
Q psy17243        208 SLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       208 ~~l~~~~~dg~i~iwd~~  225 (392)
                      ..+++|+.|++|+|+.-.
T Consensus       401 ~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  401 GLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ceEEeccCcceEEEeccc
Confidence            799999999999999643

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.2e-28  Score=219.45  Aligned_cols=224  Identities=13%  Similarity=0.136  Sum_probs=176.3

Q ss_pred             eeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCC-------ceeEEecccccceEEEEEecCC-CEEEEEeCCCe
Q psy17243         21 TMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLG-------SVVSTFKSHQSTILAVAVLSDS-RRVVTSDKAGV   91 (392)
Q Consensus        21 ~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~   91 (392)
                      .+.+|.+.|++++|+| ++++|++|+.|++|++||+.++       +.+..+.+|...|.+++|+|++ ++|++++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4778999999999999 8889999999999999999765       3567888999999999999985 68999999999


Q ss_pred             EEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccc-eEEEEEEcCCCEE
Q psy17243         92 IAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEE-ITCFTVTWDSQYL  167 (392)
Q Consensus        92 i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l  167 (392)
                      |++||+++++.+..+   ...+.+++|+|++.+|++++.|+.|++||++++..   ......|... +..+.|.+++..+
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~---v~tl~~H~~~~~~~~~w~~~~~~i  226 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI---VSSVEAHASAKSQRCLWAKRKDLI  226 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE---EEEEecCCCCcceEEEEcCCCCeE
Confidence            999999998876554   45789999999999999999999999999985432   2233355543 4467788887777


Q ss_pred             EEee----CCCcEEEEEcCCCe-EEEEEecCC-CceeEEEEecCCCcEEEEec-CCCeEEEEECCCCceeeeecc-cccc
Q psy17243        168 ITGS----RDMSLKVWQVVGGK-LAQVLVGHT-DHVSCVAVAVTNKSLVVSGS-KDSNLIVWDMETGGEEHFLAG-HLGC  239 (392)
Q Consensus       168 ~~~~----~dg~i~i~d~~~~~-~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~  239 (392)
                      ++++    .|+.|++||+++.. ++.....+. ..+....|+ +++.+|++++ .|+.|++||+.+++.+..... +..+
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d-~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~  305 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFD-EDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEP  305 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEc-CCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCC
Confidence            7654    47899999998764 344333333 344455677 6677777766 599999999999887765443 4456


Q ss_pred             eeEEEEcCC
Q psy17243        240 VTCVKLAGD  248 (392)
Q Consensus       240 v~~~~~~~d  248 (392)
                      +..++|.|.
T Consensus       306 ~~g~~~~pk  314 (493)
T PTZ00421        306 HKGLCMMPK  314 (493)
T ss_pred             CcceEeccc
Confidence            778888874

>KOG0294|consensus

Probab=99.97  E-value=3.1e-29  Score=196.94  Aligned_cols=239  Identities=14%  Similarity=0.280  Sum_probs=198.1

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCC--eEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEec
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSI--FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~   78 (392)
                      +|+.|-+|+|||+.+.+.+..+..|.+.|+++.|.++-.  .|++|+.||.|.+|+...-.++..+++|.+.|+.++.+|
T Consensus        58 SGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP  137 (362)
T KOG0294|consen   58 SGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP  137 (362)
T ss_pred             ccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC
Confidence            689999999999999999999999999999999999764  899999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeee--ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         79 DSRRVVTSDKAGVIAVWVADNAQLLY--SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        79 ~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      .++.-++.+.|+.++.||+-+++.-.  .+......+.|+|.|.+++.+..+ .|-+|.+.........    .....+.
T Consensus       138 S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i----~~~~r~l  212 (362)
T KOG0294|consen  138 SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREI----ENPKRIL  212 (362)
T ss_pred             CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhh----hccccce
Confidence            99999999999999999999887643  444556679999999999988775 4788987633222211    2234566


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEE-EecCCCcEEEEecCCCeEEEEECCCC-----cee
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVA-VAVTNKSLVVSGSKDSNLIVWDMETG-----GEE  230 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~  230 (392)
                      |+.|. ++..|++|..|+.|.+||..+..+...+.+|..+|..+. +..+.+.+|++++.||.|+|||++..     +++
T Consensus       213 ~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l  291 (362)
T KOG0294|consen  213 CATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLL  291 (362)
T ss_pred             eeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCccee
Confidence            76665 577999999999999999999999999999999999998 44456789999999999999999865     333


Q ss_pred             eeecccccceeEEEEc
Q psy17243        231 HFLAGHLGCVTCVKLA  246 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~  246 (392)
                      ..+. ....++|+...
T Consensus       292 ~e~n-~~~RltCl~~~  306 (362)
T KOG0294|consen  292 AELN-TNVRLTCLRVK  306 (362)
T ss_pred             EEee-cCCccceeeeh
Confidence            3333 24456665543

>KOG0277|consensus

Probab=99.97  E-value=1.3e-29  Score=193.22  Aligned_cols=249  Identities=20%  Similarity=0.249  Sum_probs=205.2

Q ss_pred             cCCeEEEEECCCccceeeecc--CCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCC-CceeEEecccccceEEEEEecC
Q psy17243          4 MDCLVNVWQMNSHELQSTMEG--HLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTL-GSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      .+|.+.|.++...+-+..+..  -.+.+..++|+++ ...+++++.||+++|||+.. ..++..++.|...|.++.|++-
T Consensus        36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~  115 (311)
T KOG0277|consen   36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV  115 (311)
T ss_pred             cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence            468899999865554544432  4678999999995 46788999999999999643 3678899999999999999885


Q ss_pred             -CCEEEEEeCCCeEEEEEcCCceeeeecccce---eEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccc
Q psy17243         80 -SRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        80 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  154 (392)
                       ...+++++.|++|++|+...++.+.++.++.   ....|+| ..+.+++++.|+.+++||++..   ........|..+
T Consensus       116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~---gk~~~i~ah~~E  192 (311)
T KOG0277|consen  116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP---GKFMSIEAHNSE  192 (311)
T ss_pred             cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC---CceeEEEeccce
Confidence             4567888999999999999999888887754   4567888 6789999999999999999854   222335578899


Q ss_pred             eEEEEEEc-CCCEEEEeeCCCcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc-eee
Q psy17243        155 ITCFTVTW-DSQYLITGSRDMSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG-EEH  231 (392)
Q Consensus       155 v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~  231 (392)
                      +.|+.|+. +.+.|++|+.|+.|++||+++. .++..+.+|.-.|..++|+|....+|++++.|-+++|||...+. .+.
T Consensus       193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e  272 (311)
T KOG0277|consen  193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE  272 (311)
T ss_pred             eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh
Confidence            99999987 4678999999999999999875 57888999999999999999999999999999999999998544 455


Q ss_pred             eecccccceeEEEEcC-CCeEEEEc
Q psy17243        232 FLAGHLGCVTCVKLAG-DGTVAMSD  255 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~-dg~~~~~~  255 (392)
                      +...|..-+..+.|++ +...+++.
T Consensus       273 ~~~~HtEFv~g~Dws~~~~~~vAs~  297 (311)
T KOG0277|consen  273 TVDHHTEFVCGLDWSLFDPGQVAST  297 (311)
T ss_pred             hhhccceEEeccccccccCceeeec
Confidence            6777888999999987 44455554

>KOG1036|consensus

Probab=99.97  E-value=7.9e-29  Score=194.24  Aligned_cols=250  Identities=15%  Similarity=0.173  Sum_probs=208.4

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      ++.||.+++||+....+...++ |..++.+++|.++. .+++|+.||.|+.+|++++.... +..|..+|.++.+.+...
T Consensus        31 ssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~  107 (323)
T KOG1036|consen   31 SSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVG  107 (323)
T ss_pred             EeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc-eEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCC
Confidence            5789999999999887777776 99999999999854 68999999999999999887654 445999999999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEE
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVT  161 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (392)
                      .+++|+.|++|++||.++.........+-...+++-.++.|++|+.+..+.+||++...... .........++.|+++.
T Consensus       108 ~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~-q~reS~lkyqtR~v~~~  186 (323)
T KOG1036|consen  108 CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF-QRRESSLKYQTRCVALV  186 (323)
T ss_pred             eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchh-hhccccceeEEEEEEEe
Confidence            99999999999999999866666555555566667788899999999999999998654433 22233456789999999


Q ss_pred             cCCCEEEEeeCCCcEEEEEcCCC----eEEEEEecCC---------CceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        162 WDSQYLITGSRDMSLKVWQVVGG----KLAQVLVGHT---------DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       162 ~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      |++.=+++++-||.|.+=.+...    +....|+.|.         -+|++++|+| -...|+||+.||.|.+||+.+.+
T Consensus       187 pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~rK  265 (323)
T KOG1036|consen  187 PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFNRK  265 (323)
T ss_pred             cCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcchh
Confidence            98888999999999988666554    3334455553         2689999995 47789999999999999999999


Q ss_pred             eeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        229 EEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       229 ~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .+..+......|.+++|+.||..|+.+.
T Consensus       266 rl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  266 RLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             hhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            9999988888899999999999999875

>KOG0275|consensus

Probab=99.97  E-value=4.2e-30  Score=202.86  Aligned_cols=258  Identities=15%  Similarity=0.240  Sum_probs=223.0

Q ss_pred             CCccCCeEEEEECCCccceeeec--------cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-ccccce
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTME--------GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTI   71 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v   71 (392)
                      +|+.||-|.|||..+|++.+.++        -+..+|.|+.|+.|...||+|+.||.|++|.+++|++++.+. .|...|
T Consensus       230 sgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGv  309 (508)
T KOG0275|consen  230 SGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGV  309 (508)
T ss_pred             eccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCe
Confidence            58999999999999998876653        378899999999999999999999999999999999999997 899999


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee
Q psy17243         72 LAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        72 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      +++.|+.|+..+++++.|.++++.-+.+|+++.++.+   .++...|.++|+.+++++.||+|++|+..+.......+..
T Consensus       310 t~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~  389 (508)
T KOG0275|consen  310 TCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL  389 (508)
T ss_pred             eEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC
Confidence            9999999999999999999999999999999887776   4578899999999999999999999999876555444433


Q ss_pred             eccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCCeEEEEEecC---CCceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        149 VSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVGGKLAQVLVGH---TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                       +...+|+++-.-|. ...++++...++++|.++. |+.++.+...   .+...+.+.+ +.+.++.+.+.|+.++.|.+
T Consensus       390 -~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS-pkGewiYcigED~vlYCF~~  466 (508)
T KOG0275|consen  390 -GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS-PKGEWIYCIGEDGVLYCFSV  466 (508)
T ss_pred             -CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec-CCCcEEEEEccCcEEEEEEe
Confidence             45677888877774 5688888889999999974 7777777532   3445566778 78899999999999999999


Q ss_pred             CCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCC
Q psy17243        225 ETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRP  261 (392)
Q Consensus       225 ~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~  261 (392)
                      .+|+....+..|+..+..++-+|...++++-.+++..
T Consensus       467 ~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgll  503 (508)
T KOG0275|consen  467 LSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLL  503 (508)
T ss_pred             ecCceeeeeecccccccccccCcccchhhhhcccchh
Confidence            9999999999999999999999999999887665443

>KOG0277|consensus

Probab=99.97  E-value=3.2e-30  Score=196.64  Aligned_cols=222  Identities=18%  Similarity=0.256  Sum_probs=190.1

Q ss_pred             CCccCCeEEEEECC-CccceeeeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEec
Q psy17243          1 MGGMDCLVNVWQMN-SHELQSTMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~   78 (392)
                      +++.||++++||+. ..++++.++.|...|.++.|++ ++..++++|.|++|++|+..-++.+.++.+|...|...+|+|
T Consensus        78 ~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp  157 (311)
T KOG0277|consen   78 AASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSP  157 (311)
T ss_pred             EEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCC
Confidence            46789999999974 3567888999999999999999 566788889999999999999999999999999999999999


Q ss_pred             C-CCEEEEEeCCCeEEEEEcCCcee---eeecccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeecccc
Q psy17243         79 D-SRRVVTSDKAGVIAVWVADNAQL---LYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        79 ~-~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      . .+.+++++.|+++++||++....   +..+...+.|+.|+. +.+.+++|+.|+.|+.||++...  ..+....+|.-
T Consensus       158 ~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~  235 (311)
T KOG0277|consen  158 HIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGL  235 (311)
T ss_pred             CCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCce
Confidence            6 57899999999999999876532   333445778888887 66789999999999999998543  33444468999


Q ss_pred             ceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        154 EITCFTVTWD-SQYLITGSRDMSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       154 ~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      .|..++|+|. ...|++++.|-+++|||...+ ..+.+...|+.-+..+.|++-.+.++++.+.|+.++||+.
T Consensus       236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999999997 568999999999999999754 4556667788899999999889999999999999999984

>KOG0299|consensus

Probab=99.97  E-value=4.6e-30  Score=211.27  Aligned_cols=288  Identities=20%  Similarity=0.319  Sum_probs=228.8

Q ss_pred             eeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCcee----EE-------------e-cccccceEEEEEecCC
Q psy17243         19 QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV----ST-------------F-KSHQSTILAVAVLSDS   80 (392)
Q Consensus        19 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~   80 (392)
                      ...+..|..+|.+++++|+.++.++++.+|+|.-|++.+++..    ..             - +.|...+.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4566779999999999999999999999999999999887633    11             0 2677889999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      ++|++|+.|..|.||+.++.+.++.   +.+.+.+++|-...+.+++++.|+.|++|++.   .........+|+..|..
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~---~~s~vetlyGHqd~v~~  291 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID---QLSYVETLYGHQDGVLG  291 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehh---HhHHHHHHhCCccceee
Confidence            9999999999999999999988766   44578899999999999999999999999997   55556666799999999


Q ss_pred             EEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccc
Q psy17243        158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL  237 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  237 (392)
                      +....-++.+-+|+.|+++++|++.. .....+.+|.+.+.|++|-  +...+++|+.||.|.+|++.+.+++.......
T Consensus       292 IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH  368 (479)
T KOG0299|consen  292 IDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAH  368 (479)
T ss_pred             echhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEeeccc
Confidence            99888888888888999999999944 3344567889999999997  67788999999999999999998887655321


Q ss_pred             cceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccce
Q psy17243        238 GCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEIS  317 (392)
Q Consensus       238 ~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~  317 (392)
                      +.+.      +.       ++   ..  .+              .|..                                
T Consensus       369 gv~~------~~-------~~---~~--~~--------------~Wit--------------------------------  384 (479)
T KOG0299|consen  369 GVIP------EL-------DP---VN--GN--------------FWIT--------------------------------  384 (479)
T ss_pred             cccC------Cc-------cc---cc--cc--------------ccee--------------------------------
Confidence            1111      10       00   00  00              0110                                


Q ss_pred             ecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCc
Q psy17243        318 KIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSP  386 (392)
Q Consensus       318 ~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~  386 (392)
                               ..+..|...++| +|+.+|.||||-+.++.++..+..+++...-+++++|+++|++|++|
T Consensus       385 ---------sla~i~~sdL~a-sGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  385 ---------SLAVIPGSDLLA-SGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ---------eeEecccCceEE-ecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence                     112234445556 99999999999999998766667778777788889999999977754

>KOG0308|consensus

Probab=99.97  E-value=1.3e-29  Score=217.04  Aligned_cols=242  Identities=21%  Similarity=0.340  Sum_probs=206.3

Q ss_pred             CCccCCeEEEEECCCcc------ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC--ceeEEecccccceE
Q psy17243          1 MGGMDCLVNVWQMNSHE------LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--SVVSTFKSHQSTIL   72 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~   72 (392)
                      |||.||.|++|++....      .+..++.|.+.|+.+....+++.|+++|.|-+|++|+...+  -++.++..|...|.
T Consensus        42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk  121 (735)
T KOG0308|consen   42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK  121 (735)
T ss_pred             ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe
Confidence            69999999999985322      36678889999999999999999999999999999999887  67888999999999


Q ss_pred             EEEE-ecCCCEEEEEeCCCeEEEEEcCCce--eeee------------cccceeEEEEeCCCCEEEEecCCCcEEEEeCC
Q psy17243         73 AVAV-LSDSRRVVTSDKAGVIAVWVADNAQ--LLYS------------ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTS  137 (392)
Q Consensus        73 ~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~------------~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~  137 (392)
                      |+++ .++...+++|+-|+.|.+||++++.  .+..            ...++.+++.++.+..+++|+..+.+++||.+
T Consensus       122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr  201 (735)
T KOG0308|consen  122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR  201 (735)
T ss_pred             eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccc
Confidence            9999 7888899999999999999999772  2222            22367899999999999999999999999998


Q ss_pred             CCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC
Q psy17243        138 PQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                      +.+...   ...+|...|.++..++||+.+++++.||+|++||+...+++.++..|+..|.++..+ ++-..+++|+.||
T Consensus       202 t~~kim---kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~-~sf~~vYsG~rd~  277 (735)
T KOG0308|consen  202 TCKKIM---KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSS-PSFTHVYSGGRDG  277 (735)
T ss_pred             ccccee---eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeC-CCcceEEecCCCC
Confidence            544333   333999999999999999999999999999999999999999999999999999998 7788999999999


Q ss_pred             eEEEEECCCCceeeeecccccceeEEEEc
Q psy17243        218 NLIVWDMETGGEEHFLAGHLGCVTCVKLA  246 (392)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  246 (392)
                      .|..=|+++......+-....+|..+..+
T Consensus       278 ~i~~Tdl~n~~~~tlick~daPv~~l~~~  306 (735)
T KOG0308|consen  278 NIYRTDLRNPAKSTLICKEDAPVLKLHLH  306 (735)
T ss_pred             cEEecccCCchhheEeecCCCchhhhhhc
Confidence            99999999864443333344455555554

>KOG0305|consensus

Probab=99.97  E-value=3.7e-29  Score=215.02  Aligned_cols=279  Identities=15%  Similarity=0.192  Sum_probs=216.3

Q ss_pred             eEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc--
Q psy17243         30 SCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL--  107 (392)
Q Consensus        30 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--  107 (392)
                      .-+.|+. .+.|+.|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.  
T Consensus       181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~  258 (484)
T KOG0305|consen  181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS  258 (484)
T ss_pred             hHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence            3456663 34566664 4579999999998766666568899999999999999999999999999998887766544  


Q ss_pred             --cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe
Q psy17243        108 --GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK  185 (392)
Q Consensus       108 --~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  185 (392)
                        ..+.+++|.  +..+.+|+.++.|..+|++..+....  ...+|...|+.+.|++|+++|++|+.|+.+.|||....+
T Consensus       259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~  334 (484)
T KOG0305|consen  259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE  334 (484)
T ss_pred             cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence              466788887  77899999999999999986544433  355899999999999999999999999999999998889


Q ss_pred             EEEEEecCCCceeEEEEecCCCcEEEEec--CCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCC
Q psy17243        186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGS--KDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAG  263 (392)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~  263 (392)
                      +...+..|...|..++|+|-...+||+|+  .|++|++||..+++.+..+. ....|.++.|++..+-+++.......  
T Consensus       335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n--  411 (484)
T KOG0305|consen  335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN--  411 (484)
T ss_pred             ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCC--
Confidence            99999999999999999999999999976  69999999999999988775 56789999999998767665421111  


Q ss_pred             CCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhhhcccCh
Q psy17243        264 PKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHF  343 (392)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~  343 (392)
                                   .+..|.|..                 ++..-.+.|         +...+.+.++||||..++ +|+.
T Consensus       412 -------------~i~lw~~ps-----------------~~~~~~l~g---------H~~RVl~la~SPdg~~i~-t~a~  451 (484)
T KOG0305|consen  412 -------------QITLWKYPS-----------------MKLVAELLG---------HTSRVLYLALSPDGETIV-TGAA  451 (484)
T ss_pred             -------------cEEEEeccc-----------------cceeeeecC---------CcceeEEEEECCCCCEEE-Eecc
Confidence                         111111100                 000000001         111122236899999998 9999


Q ss_pred             HHHHHHhhCCCCCC
Q psy17243        344 DQLEALWNKKSPPR  357 (392)
Q Consensus       344 d~~i~~Wd~~~~~~  357 (392)
                      |.++++|++-+...
T Consensus       452 DETlrfw~~f~~~~  465 (484)
T KOG0305|consen  452 DETLRFWNLFDERP  465 (484)
T ss_pred             cCcEEeccccCCCC
Confidence            99999999877533

>KOG0278|consensus

Probab=99.97  E-value=4.1e-30  Score=195.62  Aligned_cols=222  Identities=18%  Similarity=0.342  Sum_probs=195.1

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc-eeEEecccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS-VVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~   79 (392)
                      +++.|=+-+|||.-+|..+..+. |+.-|.+++|+.|.++|++|+.+..++|||++..+ +..++.+|.+.|..+.|...
T Consensus        76 saaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e  154 (334)
T KOG0278|consen   76 SAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE  154 (334)
T ss_pred             hhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc
Confidence            46678888999999999999998 99999999999999999999999999999998664 56788899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeec--ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYSA--LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      .+.|++...|++|++||.+++..++.+  +.+++++.++++|++|.++.. +.|.+||..+-.....    ..-...|.+
T Consensus       155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs----~k~P~nV~S  229 (334)
T KOG0278|consen  155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKS----YKMPCNVES  229 (334)
T ss_pred             CceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC-ceeEEeccccccceee----ccCcccccc
Confidence            999999999999999999999988765  568999999999998877654 6799999974332222    234567889


Q ss_pred             EEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEE-ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL-VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      ..++|+...+++|++|..++.||..++..+..+ ++|.++|.|+.|+ |++...++|++||+|++|...-++.
T Consensus       230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS-PdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS-PDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC-CCCceeeccCCCceEEEEEecCCCc
Confidence            999999999999999999999999999998886 8999999999999 7889999999999999999875543

>KOG0299|consensus

Probab=99.97  E-value=1.5e-28  Score=202.45  Aligned_cols=249  Identities=17%  Similarity=0.358  Sum_probs=208.5

Q ss_pred             CCccCCeEEEEECCCccce----ee---e-----------ccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeE
Q psy17243          1 MGGMDCLVNVWQMNSHELQ----ST---M-----------EGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS   62 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~----~~---~-----------~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~   62 (392)
                      +++.+|+|.-|++.+++..    ..   +           ++|...|.+++.++|++||++|+.|..|.||+.++.+.++
T Consensus       159 sask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~  238 (479)
T KOG0299|consen  159 SASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK  238 (479)
T ss_pred             ecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh
Confidence            4688999999999777633    11   1           2688999999999999999999999999999999999999


Q ss_pred             EecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeee---ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCC
Q psy17243         63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY---SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ  139 (392)
Q Consensus        63 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  139 (392)
                      .+.+|.+.|.+++|-.....+++++.|+.+++|+++....+.   .++..+..+.....++.+-+|+.|+++++|++.  
T Consensus       239 ~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~--  316 (479)
T KOG0299|consen  239 VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP--  316 (479)
T ss_pred             cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecc--
Confidence            999999999999999888999999999999999999876654   455567777777788888888899999999994  


Q ss_pred             CCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe-cC-----------CCceeEEEEecCCC
Q psy17243        140 THKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV-GH-----------TDHVSCVAVAVTNK  207 (392)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~-----------~~~v~~~~~~~~~~  207 (392)
                        ......+.++.+.+-|++|-. ...+++|+.+|.|.+|++.+.+++.... +|           +..|++++.. ++.
T Consensus       317 --eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i-~~s  392 (479)
T KOG0299|consen  317 --EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVI-PGS  392 (479)
T ss_pred             --ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEec-ccC
Confidence              222334557888999999984 5689999999999999999988887653 12           2378899999 788


Q ss_pred             cEEEEecCCCeEEEEECCCC----ceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        208 SLVVSGSKDSNLIVWDMETG----GEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       208 ~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +++++|+.+|.|++|.+..+    .++..+. -.+.|++++|+++|+.++.+.
T Consensus       393 dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  393 DLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             ceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence            99999999999999999887    3444454 567899999999999777764

>KOG0289|consensus

Probab=99.97  E-value=1.2e-28  Score=201.53  Aligned_cols=228  Identities=19%  Similarity=0.255  Sum_probs=202.1

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCc---eee
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA---QLL  103 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~  103 (392)
                      ..+.++...|....+++|+.|..+.++|...++.+..+++|...|+.+.++|+...+++++.|..|++|.....   ...
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            56888888887778999999999999999999999999999999999999999999999999999999987654   345


Q ss_pred             eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC
Q psy17243        104 YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                      ..+..+++.+..+|.+.||++++.|+...+.|++++......... ...-.+++.+|+|||.+|.+|..||.++|||+.+
T Consensus       300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks  378 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS  378 (506)
T ss_pred             ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence            677889999999999999999999999999999865443322221 2345689999999999999999999999999999


Q ss_pred             CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccc-cceeEEEEcCCCeEEEEcC
Q psy17243        184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL-GCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~dg~~~~~~~  256 (392)
                      +..+..|.+|.++|..++|+ .+|.+|++++.|+.|++||++..+...++.... .++.++.|.+.|++++.+.
T Consensus       379 ~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g  451 (506)
T KOG0289|consen  379 QTNVAKFPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG  451 (506)
T ss_pred             ccccccCCCCCCceeEEEec-cCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence            99999999999999999999 999999999999999999999988777776443 3799999999999999864

>KOG0268|consensus

Probab=99.97  E-value=3.8e-30  Score=205.69  Aligned_cols=283  Identities=17%  Similarity=0.226  Sum_probs=213.2

Q ss_pred             ceeeeccCCcCeeEEEecCCC-CeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         18 LQSTMEGHLNTVSCVAISPNS-IFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      .+..|.+|.+.|.|++=+|+. ..+++|+.||.|+|||+.+..++.+++.|.+.|..|++..  ..+++++.|.+|+.|.
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence            345678999999999999976 6899999999999999999999999999999999999986  6899999999999999


Q ss_pred             cCCceeeeeccc--ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCC-CEEEEeeCC
Q psy17243         97 ADNAQLLYSALG--PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS-QYLITGSRD  173 (392)
Q Consensus        97 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  173 (392)
                      ++.. .+..+.+  ....+..+..++.+++++.  .|.|||..-.   .+.....-....|.++.|+|.. ..|+++..|
T Consensus       136 ~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~---~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  136 IDGP-PLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD---NPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             ccCC-cceeeeccccccccccccccccccccCc--eeeecccccC---CccceeecCCCceeEEecCCCcchheeeeccC
Confidence            8764 4444433  3345555666777887764  5889998733   3333333456789999999975 467777799


Q ss_pred             CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc-eeeeecccccceeEEEEcCCCeEE
Q psy17243        174 MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG-EEHFLAGHLGCVTCVKLAGDGTVA  252 (392)
Q Consensus       174 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~dg~~~  252 (392)
                      +.|.+||++++++++.+. -...-+.|+|+| ....+++|+.|..++.||++..+ ++....+|.+.|.++.|||.|+-+
T Consensus       210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef  287 (433)
T KOG0268|consen  210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF  287 (433)
T ss_pred             CceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence            999999999999988775 356678899996 77788999999999999998754 667888999999999999999999


Q ss_pred             EEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceec
Q psy17243        253 MSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKD  323 (392)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~  323 (392)
                      ++++.+..+.........             .+..-|......+..+..+.|.+|+++||+|+.+++|.+.
T Consensus       288 vsgsyDksIRIf~~~~~~-------------SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  288 VSGSYDKSIRIFPVNHGH-------------SRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             ccccccceEEEeecCCCc-------------chhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            998866443221110000             0011122222223334445666777777777777777654

>KOG0973|consensus

Probab=99.97  E-value=1.8e-28  Score=221.93  Aligned_cols=260  Identities=22%  Similarity=0.315  Sum_probs=210.5

Q ss_pred             CCc--cCCeEEEEECCC------------ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC---------
Q psy17243          1 MGG--MDCLVNVWQMNS------------HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL---------   57 (392)
Q Consensus         1 tg~--~dg~i~vwd~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------   57 (392)
                      ||+  .||.++||+.+.            .+.+.++..|.+.|+|+.|+|||++||+|+.|+.|.||....         
T Consensus        30 TgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs  109 (942)
T KOG0973|consen   30 TGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGS  109 (942)
T ss_pred             cCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccc
Confidence            567  888999998742            344566778999999999999999999999999999998762         


Q ss_pred             ---------CceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEe
Q psy17243         58 ---------GSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSG  125 (392)
Q Consensus        58 ---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~  125 (392)
                               -+.+..+.+|...|..++|+|++.+|++++.|++|.+|+..+.+.+..   +.+.+..+.|.|-|++|++-
T Consensus       110 ~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASq  189 (942)
T KOG0973|consen  110 TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQ  189 (942)
T ss_pred             cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeee
Confidence                     136678889999999999999999999999999999999999876554   55678899999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCCcceee---eccccceEEEEEEcCCCEEEEeeC----CCcEEEEEcCCCeEEEEEecCCCcee
Q psy17243        126 DGDNSLRIWPTSPQTHKDDERFT---VSHSEEITCFTVTWDSQYLITGSR----DMSLKVWQVVGGKLAQVLVGHTDHVS  198 (392)
Q Consensus       126 ~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~v~  198 (392)
                      +.|++|++|+...-.........   .........+.|+|||.+|++...    -.++.|.+-.+.+.-..+.+|..++.
T Consensus       190 sdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~e  269 (942)
T KOG0973|consen  190 SDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVE  269 (942)
T ss_pred             cCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceE
Confidence            99999999996532111111111   123445778999999999998643    45788998888888889999999999


Q ss_pred             EEEEecC----C--------C----cEEEEecCCCeEEEEECCCCceeeeecc-cccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        199 CVAVAVT----N--------K----SLVVSGSKDSNLIVWDMETGGEEHFLAG-HLGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       199 ~~~~~~~----~--------~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      ++.|+|.    +        .    ..+++|+.|++|.||.....+++..+.. .+..|..|+|+|||..|...+.++.
T Consensus       270 vvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt  348 (942)
T KOG0973|consen  270 VVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT  348 (942)
T ss_pred             EEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence            9999972    1        1    1789999999999999988887765543 4568999999999988877765543

>KOG0274|consensus

Probab=99.97  E-value=2e-28  Score=218.28  Aligned_cols=220  Identities=27%  Similarity=0.453  Sum_probs=188.6

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEE-ecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST-FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL  103 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  103 (392)
                      +...+.+..|.  ..++++++.|++|++||..++..+.. +.+|.+.|.++++...+.++++|+.|.++++||..++++.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            56678888888  44799999999999999999999888 9999999999999887889999999999999999999999


Q ss_pred             eecccceeE-EEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcC
Q psy17243        104 YSALGPSKC-LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV  182 (392)
Q Consensus       104 ~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  182 (392)
                      ..+.++... .++......+++|+.|.+|++|++.   ....+....+|..+|.++.++  +.++++|+.|++|.+||+.
T Consensus       285 ~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~---n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  285 HSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVT---NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             EEecCCCceEEEEEccCceEeeccCCceEEEEecc---CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence            988875543 3445566678888999999999998   445555555699999999987  7899999999999999999


Q ss_pred             CCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC-ceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        183 GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG-GEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      ++++++.+.+|...|+++.+. .. ..+++|+.|++|++||++++ +++..+.+|...+..+.+  .+++++++
T Consensus       360 ~~~cl~sl~gH~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~  429 (537)
T KOG0274|consen  360 TGKCLKSLSGHTGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSS  429 (537)
T ss_pred             hceeeeeecCCcceEEEEEec-Cc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEec
Confidence            999999999999999999886 22 89999999999999999999 999999999887754443  23444443

>KOG1446|consensus

Probab=99.96  E-value=1.6e-27  Score=187.82  Aligned_cols=283  Identities=12%  Similarity=0.152  Sum_probs=221.3

Q ss_pred             CccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeC--CCeE
Q psy17243         15 SHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK--AGVI   92 (392)
Q Consensus        15 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i   92 (392)
                      +.+..+.+..-...|.++.|+++|.+|++++.|.+++|||..+++.++++..++-.+..++|....+.++.++.  |.+|
T Consensus         3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence            45566677777889999999999999999999999999999999999999988889999999988888887776  8899


Q ss_pred             EEEEcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEE
Q psy17243         93 AVWVADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLIT  169 (392)
Q Consensus        93 ~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  169 (392)
                      +..++.+.+.++.+.+   .+..++.+|-+..+++++.|++|++||++..+....+.     ...-..++|.|+|-++|+
T Consensus        83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-----~~~~pi~AfDp~GLifA~  157 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-----LSGRPIAAFDPEGLIFAL  157 (311)
T ss_pred             EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-----cCCCcceeECCCCcEEEE
Confidence            9999999999988766   57899999999999999999999999998443332222     223345689999999999


Q ss_pred             eeCCCcEEEEEcCCC--eEEEEEe---cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEE
Q psy17243        170 GSRDMSLKVWQVVGG--KLAQVLV---GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK  244 (392)
Q Consensus       170 ~~~dg~i~i~d~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  244 (392)
                      +.....|++||++.-  .+...+.   +.....+.+.|+ ++|.+++.+...+.+++.|.-+|..+..+..+...     
T Consensus       158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS-~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~-----  231 (311)
T KOG1446|consen  158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS-PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA-----  231 (311)
T ss_pred             ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEc-CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC-----
Confidence            988889999999864  3334433   335678999999 77888888888999999999988877666544221     


Q ss_pred             EcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceecc
Q psy17243        245 LAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDN  324 (392)
Q Consensus       245 ~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~  324 (392)
                          +.+-                                                        +               
T Consensus       232 ----~~~~--------------------------------------------------------~---------------  236 (311)
T KOG1446|consen  232 ----GNLP--------------------------------------------------------L---------------  236 (311)
T ss_pred             ----CCcc--------------------------------------------------------e---------------
Confidence                0000                                                        1               


Q ss_pred             CCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCccc
Q psy17243        325 VGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVD  388 (392)
Q Consensus       325 ~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~  388 (392)
                        ...|+||++++. ++++||+|.+|++.++.....+..+  .-.....+.|.|....+|+++.
T Consensus       237 --~a~ftPds~Fvl-~gs~dg~i~vw~~~tg~~v~~~~~~--~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  237 --SATFTPDSKFVL-SGSDDGTIHVWNLETGKKVAVLRGP--NGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             --eEEECCCCcEEE-EecCCCcEEEEEcCCCcEeeEecCC--CCCCccccccCCceeeeeecCc
Confidence              113788888887 8889999999999888774443333  2223334779998888887764

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.9e-27  Score=210.68  Aligned_cols=227  Identities=15%  Similarity=0.215  Sum_probs=166.1

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCcee-------------EEecccccceEEEEEec-CCCEEEEEeCCC
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV-------------STFKSHQSTILAVAVLS-DSRRVVTSDKAG   90 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~   90 (392)
                      |-..|.....++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++++|++++.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            3445666666777666777777777777765433222             24678999999999999 788999999999


Q ss_pred             eEEEEEcCCce-------e---eeecccceeEEEEeCCC-CEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEE
Q psy17243         91 VIAVWVADNAQ-------L---LYSALGPSKCLTVTHNM-KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFT  159 (392)
Q Consensus        91 ~i~iwd~~~~~-------~---~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~  159 (392)
                      +|++||+.++.       .   +..+...+.+++|+|++ ++|++++.|+.|++||+....   .......|...|.+++
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~---~~~~l~~h~~~V~sla  175 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK---AVEVIKCHSDQITSLE  175 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe---EEEEEcCCCCceEEEE
Confidence            99999997652       1   23345578899999975 699999999999999998543   3334456888999999


Q ss_pred             EEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCc-eeEEEEecCCCcEEEEe---cCCCeEEEEECCCCce-eeeec
Q psy17243        160 VTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDH-VSCVAVAVTNKSLVVSG---SKDSNLIVWDMETGGE-EHFLA  234 (392)
Q Consensus       160 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~  234 (392)
                      |+|++++|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+..+.++.+|   +.|+.|++||+++... +....
T Consensus       176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~  255 (493)
T PTZ00421        176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD  255 (493)
T ss_pred             EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence            9999999999999999999999999999999888765 34677885444444444   3589999999987543 22222


Q ss_pred             cc-ccceeEEEEcCCCeEEEE
Q psy17243        235 GH-LGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       235 ~~-~~~v~~~~~~~dg~~~~~  254 (392)
                      .+ ...+....|++|+.+++.
T Consensus       256 ~d~~~~~~~~~~d~d~~~L~l  276 (493)
T PTZ00421        256 LDQSSALFIPFFDEDTNLLYI  276 (493)
T ss_pred             cCCCCceEEEEEcCCCCEEEE
Confidence            12 123334445555554443

>KOG0283|consensus

Probab=99.96  E-value=2.8e-28  Score=215.26  Aligned_cols=207  Identities=17%  Similarity=0.262  Sum_probs=173.1

Q ss_pred             ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEec-CCCEEEEEeCCCeEEEEE
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS-DSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd   96 (392)
                      +++.+.||.+.|..|.|+.++ +|++++.|.+|++|++...++++.|. |..-|+|++|+| |.+++++|+-|+.++||+
T Consensus       361 P~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWs  438 (712)
T KOG0283|consen  361 PFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWS  438 (712)
T ss_pred             chhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEee
Confidence            345567999999999999875 89999999999999999999999998 999999999999 568999999999999999


Q ss_pred             cCCceeeee--cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeee-----ccccceEEEEEEcC-CCEEE
Q psy17243         97 ADNAQLLYS--ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV-----SHSEEITCFTVTWD-SQYLI  168 (392)
Q Consensus        97 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~-~~~l~  168 (392)
                      +...+.+..  ...-|+++++.|+|+..++|+.+|.+++|+....+......+..     .....|+.+.|.|. ...++
T Consensus       439 I~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vL  518 (712)
T KOG0283|consen  439 ISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVL  518 (712)
T ss_pred             cCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEE
Confidence            999988764  45678999999999999999999999999987544332222211     11238999999975 34677


Q ss_pred             EeeCCCcEEEEEcCCCeEEEEEecCCCc--eeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        169 TGSRDMSLKVWQVVGGKLAQVLVGHTDH--VSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       169 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      +.+.|..|+|||.++.+++..|+++...  -....|+ .++.+|++++.|..|+||+....
T Consensus       519 VTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs-~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  519 VTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFS-SDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             EecCCCceEEEeccchhhhhhhcccccCCcceeeeEc-cCCCEEEEeecCceEEEEeCCCC
Confidence            8888999999999998999888875432  2355788 69999999999999999998543

>KOG0772|consensus

Probab=99.96  E-value=8.9e-28  Score=200.60  Aligned_cols=239  Identities=16%  Similarity=0.205  Sum_probs=186.5

Q ss_pred             ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc----eeEEec-ccccceEEEEEecCCCEEEEEeCCCeE
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS----VVSTFK-SHQSTILAVAVLSDSRRVVTSDKAGVI   92 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i   92 (392)
                      ....+++|+..|.++++.|.|..|++|+.|..|++||+....    ..+.+. .....|.+++|++.+..|++.+.....
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            345678899999999999999999999999999999986432    222232 344679999999999999999999999


Q ss_pred             EEEEcCCceeeeecc---------------cceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCCCcceee---ecccc
Q psy17243         93 AVWVADNAQLLYSAL---------------GPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHKDDERFT---VSHSE  153 (392)
Q Consensus        93 ~iwd~~~~~~~~~~~---------------~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~  153 (392)
                      +++|-...+......               ..++|.+|+|. ...|++++.||++++||+........+...   .+..-
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            999987665543322               24578899995 457999999999999999855433222211   12345


Q ss_pred             ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe---EEEEEecCCC--ceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        154 EITCFTVTWDSQYLITGSRDMSLKVWQVVGGK---LAQVLVGHTD--HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      +++.++|++++++|++|+.||.|.+|+.....   ....-.+|..  .|+||.|+ .++++|++-+.|+++++||+++.+
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-YDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec-cccchhhhccCCCceeeeeccccc
Confidence            78899999999999999999999999985542   1233356776  89999999 889999999999999999999865


Q ss_pred             -eeeeecccc--cceeEEEEcCCCeEEEEcCC
Q psy17243        229 -EEHFLAGHL--GCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       229 -~~~~~~~~~--~~v~~~~~~~dg~~~~~~~~  257 (392)
                       ++....+..  .+-+.++||||.++++++..
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence             444444332  36778999999999999864

>KOG1408|consensus

Probab=99.96  E-value=5.1e-28  Score=209.61  Aligned_cols=225  Identities=18%  Similarity=0.170  Sum_probs=163.2

Q ss_pred             ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCC--CcEEEEecCCCeEEEEECCC-Cc
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTN--KSLVVSGSKDSNLIVWDMET-GG  228 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~-~~  228 (392)
                      ...+.+++.+|++++|++|...|++++|++.+.+....+.+|...|.|+.++.+.  ..+|++++.|..|+|||+.. ..
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~  538 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD  538 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence            4568999999999999999999999999999999999999999999999998653  57899999999999999874 45


Q ss_pred             eeeeecccccceeEEEEcCCC--eEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeeccccccee
Q psy17243        229 EEHFLAGHLGCVTCVKLAGDG--TVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRR  306 (392)
Q Consensus       229 ~~~~~~~~~~~v~~~~~~~dg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (392)
                      +++++.+|...|+++.|...|  ..+++...++.+...      ...+......+.-+   -+...-..+...+-.+.-+
T Consensus       539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr------~~qk~~~g~~f~r~---t~t~~ktTlYDm~Vdp~~k  609 (1080)
T KOG1408|consen  539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFR------VNQKASSGRLFPRH---TQTLSKTTLYDMAVDPTSK  609 (1080)
T ss_pred             hhhhhcccccceeEEEEeecCCceEEEeccCchhhhee------hhccccCceecccc---ccccccceEEEeeeCCCcc
Confidence            677899999999999998776  566666544333221      11111111111101   1111112222233344466


Q ss_pred             EEEeeccccceecceecc-------------CCCC---CCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccC
Q psy17243        307 FSVSASMEEISKIPIKDN-------------VGSQ---GLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNS  370 (392)
Q Consensus       307 ~~~s~s~d~~~~~~~~~~-------------~~~~---~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~  370 (392)
                      +++++..|..+++.....             .|..   ...|.|-||| +...|+++.++|...+++..   ....+..-
T Consensus       610 ~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a-tScsdktl~~~Df~sgEcvA---~m~GHsE~  685 (1080)
T KOG1408|consen  610 LVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA-TSCSDKTLCFVDFVSGECVA---QMTGHSEA  685 (1080)
T ss_pred             eEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE-EeecCCceEEEEeccchhhh---hhcCcchh
Confidence            888888888888764321             1222   6678999999 88999999999999999832   33444455


Q ss_pred             ccccccccCccCCCCcccc
Q psy17243        371 YSSRQHSVDTDELSSPVDE  389 (392)
Q Consensus       371 ~~~~~fspdg~~l~~~~~d  389 (392)
                      ++.+.|++|.+.|++++.|
T Consensus       686 VTG~kF~nDCkHlISvsgD  704 (1080)
T KOG1408|consen  686 VTGVKFLNDCKHLISVSGD  704 (1080)
T ss_pred             eeeeeecccchhheeecCC
Confidence            7779999999999977665

>KOG0300|consensus

Probab=99.96  E-value=4.9e-28  Score=190.71  Aligned_cols=242  Identities=17%  Similarity=0.352  Sum_probs=207.7

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeC------CC-----------------
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGL------TL-----------------   57 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~------~~-----------------   57 (392)
                      +++.|.+.+||.+++++++.++.+|.+.|++++|++.+.++++++.|++-.||..      ..                 
T Consensus       165 tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD  244 (481)
T KOG0300|consen  165 TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD  244 (481)
T ss_pred             ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc
Confidence            5788999999999999999999999999999999999999999999999999952      10                 


Q ss_pred             -------------C----ceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccc---eeEEEEeC
Q psy17243         58 -------------G----SVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGP---SKCLTVTH  117 (392)
Q Consensus        58 -------------~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~  117 (392)
                                   +    .++..+.+|.+.|.+..|...++.+++++.|.+..+||+++++.+..+.++   .+.++-+|
T Consensus       245 e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp  324 (481)
T KOG0300|consen  245 EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP  324 (481)
T ss_pred             ccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC
Confidence                         0    235567889999999999999999999999999999999999998877664   46677899


Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe-EEEEEecCCCc
Q psy17243        118 NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK-LAQVLVGHTDH  196 (392)
Q Consensus       118 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~  196 (392)
                      ..+++++.+.|.+.++||++  ........+.+|...|++..|..+. .+++|+.|.+|++||+++.+ ++..+. -..+
T Consensus       325 tQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~  400 (481)
T KOG0300|consen  325 TQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSP  400 (481)
T ss_pred             cceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCc
Confidence            99999999999999999998  3455666778999999999998655 68999999999999998864 566665 5678


Q ss_pred             eeEEEEecCCCcEEEEecCCCeEEEEECCCCceee-----eecccccceeEEEEcCC
Q psy17243        197 VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH-----FLAGHLGCVTCVKLAGD  248 (392)
Q Consensus       197 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~d  248 (392)
                      ++.++.+ .++.+++.-..+..|++||++.. .+.     .-++|...|+|++|..+
T Consensus       401 ~NRvavs-~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  401 ANRVAVS-KGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             cceeEee-cCCceEEeccCCceEEEEecCCC-ccccCCcccccccceeeeeeecccc
Confidence            9999999 77888998888999999999744 333     34578889999999765

>KOG0640|consensus

Probab=99.96  E-value=4.7e-28  Score=190.12  Aligned_cols=262  Identities=17%  Similarity=0.306  Sum_probs=212.2

Q ss_pred             CCccCCeEEEEECCC------------------ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeE
Q psy17243          1 MGGMDCLVNVWQMNS------------------HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS   62 (392)
Q Consensus         1 tg~~dg~i~vwd~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~   62 (392)
                      ||+.|..|+|.|++.                  .-.++++..|..+|+++.|+|....|++++.|++|+++|+......+
T Consensus       129 TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr  208 (430)
T KOG0640|consen  129 TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR  208 (430)
T ss_pred             ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH
Confidence            689999999999851                  13567788899999999999999999999999999999997654333


Q ss_pred             Eec--ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeee------ecccceeEEEEeCCCCEEEEecCCCcEEEE
Q psy17243         63 TFK--SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY------SALGPSKCLTVTHNMKYIVSGDGDNSLRIW  134 (392)
Q Consensus        63 ~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~  134 (392)
                      .++  ....+|.++.|+|.|.+|++|..-.++++||+++.++..      .+.+.++++.+++.+++.++++.||.|++|
T Consensus       209 A~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~Iklw  288 (430)
T KOG0640|consen  209 AFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLW  288 (430)
T ss_pred             HHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEee
Confidence            222  245789999999999999999999999999999988754      345678999999999999999999999999


Q ss_pred             eCCCCCCCCcceeeecc-ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCC-----ceeEEEEecCCCc
Q psy17243        135 PTSPQTHKDDERFTVSH-SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTD-----HVSCVAVAVTNKS  208 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~  208 (392)
                      |--+........  .+| ...|++..|..+++++++.+.|..+++|.+.+++++..+.+-..     --+...|+ ..+.
T Consensus       289 DGVS~rCv~t~~--~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFN-htEd  365 (430)
T KOG0640|consen  289 DGVSNRCVRTIG--NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFN-HTED  365 (430)
T ss_pred             ccccHHHHHHHH--hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhc-Cccc
Confidence            986544333222  234 46789999999999999999999999999999999999876411     12334566 4555


Q ss_pred             EEEEec-CCCeEEEEECCCCceeeee-cccccceeEEEEcCCCeEEEEcCCCCCCCCCC
Q psy17243        209 LVVSGS-KDSNLIVWDMETGGEEHFL-AGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPK  265 (392)
Q Consensus       209 ~l~~~~-~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~  265 (392)
                      +++.-. ..+.+.-||.++...+..+ .+|++.+..+.-||.+..++++.++.+...|.
T Consensus       366 yVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  366 YVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             eEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence            555443 4678999999998776544 47999999999999999999998887765543

>KOG0288|consensus

Probab=99.96  E-value=1e-29  Score=206.46  Aligned_cols=282  Identities=16%  Similarity=0.232  Sum_probs=223.5

Q ss_pred             ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc--eeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      ....+..|.+.+..+.|-++...|++|+.|..|++|++...+  .+.++.+..++|+++.|.++++++++++.|+.+++|
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW  246 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence            344567899999999999998899999999999999987666  677888888999999999999999999999999999


Q ss_pred             EcCCceeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243         96 VADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus        96 d~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      ++.+.+...++.   ..+.++.+......+++|+.|.+|+.||+..........    ....+..+..+  ...+++|..
T Consensus       247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l----~~S~cnDI~~~--~~~~~SgH~  320 (459)
T KOG0288|consen  247 NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL----PGSQCNDIVCS--ISDVISGHF  320 (459)
T ss_pred             eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc----ccccccceEec--ceeeeeccc
Confidence            999998766554   466788887777779999999999999997533322221    23445555554  557899999


Q ss_pred             CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEE
Q psy17243        173 DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVA  252 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~  252 (392)
                      |+.|++||.+...+......+. .|+++..+ .++..+.+++.|.++.+.|+++.+....+.            ..|...
T Consensus       321 DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls-~~g~~lLsssRDdtl~viDlRt~eI~~~~s------------A~g~k~  386 (459)
T KOG0288|consen  321 DKKVRFWDIRSADKTRSVPLGG-RVTSLDLS-MDGLELLSSSRDDTLKVIDLRTKEIRQTFS------------AEGFKC  386 (459)
T ss_pred             ccceEEEeccCCceeeEeecCc-ceeeEeec-cCCeEEeeecCCCceeeeecccccEEEEee------------cccccc
Confidence            9999999999999999988765 99999999 677777888999999999999877655443            222222


Q ss_pred             EEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCCh
Q psy17243        253 MSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGP  332 (392)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~  332 (392)
                      +++                                                                |     ....|||
T Consensus       387 asD----------------------------------------------------------------w-----trvvfSp  397 (459)
T KOG0288|consen  387 ASD----------------------------------------------------------------W-----TRVVFSP  397 (459)
T ss_pred             ccc----------------------------------------------------------------c-----ceeEECC
Confidence            221                                                                0     0123899


Q ss_pred             hhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCccccc
Q psy17243        333 EQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       333 dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d~  390 (392)
                      |+.|+| +|+.||.|+||++.+++....+..+- ...-+++++|+|-|..|++++.++
T Consensus       398 d~~Yva-AGS~dgsv~iW~v~tgKlE~~l~~s~-s~~aI~s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  398 DGSYVA-AGSADGSVYIWSVFTGKLEKVLSLST-SNAAITSLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             CCceee-eccCCCcEEEEEccCceEEEEeccCC-CCcceEEEEEcCCCchhhcccCCc
Confidence            999999 99999999999999998855432221 122477799999999999988765

>KOG0308|consensus

Probab=99.96  E-value=2.4e-28  Score=209.27  Aligned_cols=235  Identities=18%  Similarity=0.324  Sum_probs=202.7

Q ss_pred             CCcCee---EEEecC-CCCeEEEEeCCCeEEEEeCCCCc------eeEEecccccceEEEEEecCCCEEEEEeCCCeEEE
Q psy17243         25 HLNTVS---CVAISP-NSIFAVSGSEDNTAKVWGLTLGS------VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAV   94 (392)
Q Consensus        25 h~~~v~---~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   94 (392)
                      |...|.   ++..+. ++++|++|+.||.|++|++....      .+..++.|...|+.+....+++.|++++.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            444555   455544 67789999999999999986432      36778889999999999999999999999999999


Q ss_pred             EEcCCc-----eeeeecccceeEEEE-eCCCCEEEEecCCCcEEEEeCCCCCC--------CCcceeeeccccceEEEEE
Q psy17243         95 WVADNA-----QLLYSALGPSKCLTV-THNMKYIVSGDGDNSLRIWPTSPQTH--------KDDERFTVSHSEEITCFTV  160 (392)
Q Consensus        95 wd~~~~-----~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~--------~~~~~~~~~~~~~v~~~~~  160 (392)
                      |+....     ..++.+...+.|+++ .++...+++|+-|+.|.+||++.+..        ........++..+|.+++.
T Consensus       100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~  179 (735)
T KOG0308|consen  100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM  179 (735)
T ss_pred             eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence            998876     346778889999999 88899999999999999999986532        1111112267789999999


Q ss_pred             EcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccce
Q psy17243        161 TWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCV  240 (392)
Q Consensus       161 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  240 (392)
                      ++.+..+++|+..+.+++||.++.+.+..+++|...|..+..+ +++..+++++.||+|++||+...+++.++..|...|
T Consensus       180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~-dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V  258 (735)
T KOG0308|consen  180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN-DDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV  258 (735)
T ss_pred             CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEc-CCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence            9999999999999999999999999999999999999999999 899999999999999999999999999999999999


Q ss_pred             eEEEEcCCCeEEEEcCCCCC
Q psy17243        241 TCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       241 ~~~~~~~dg~~~~~~~~~~~  260 (392)
                      .++.-+|+-..+.++..++.
T Consensus       259 WaL~~~~sf~~vYsG~rd~~  278 (735)
T KOG0308|consen  259 WALQSSPSFTHVYSGGRDGN  278 (735)
T ss_pred             EEEeeCCCcceEEecCCCCc
Confidence            99999998888888876644

>KOG0772|consensus

Probab=99.96  E-value=9.4e-28  Score=200.45  Aligned_cols=252  Identities=18%  Similarity=0.231  Sum_probs=199.6

Q ss_pred             CCccCCeEEEEECCCc----cceeeecc-CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeE------------E
Q psy17243          1 MGGMDCLVNVWQMNSH----ELQSTMEG-HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS------------T   63 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~----~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~------------~   63 (392)
                      ||+.|..|++||++..    +-.+.|.. -...|.++.|++.+..|++.+.....+|+|-+-.+...            .
T Consensus       184 sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~n  263 (641)
T KOG0772|consen  184 SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYN  263 (641)
T ss_pred             eccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhc
Confidence            6899999999999642    22333332 34579999999999988888888899999965433332            2


Q ss_pred             ecccccceEEEEEecCC-CEEEEEeCCCeEEEEEcCCceeee-ec--------ccceeEEEEeCCCCEEEEecCCCcEEE
Q psy17243         64 FKSHQSTILAVAVLSDS-RRVVTSDKAGVIAVWVADNAQLLY-SA--------LGPSKCLTVTHNMKYIVSGDGDNSLRI  133 (392)
Q Consensus        64 ~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~-~~--------~~~~~~~~~~~~~~~l~~~~~d~~i~~  133 (392)
                      -++|...+++.+|+|.. ..+++++.||++++||+.+.+... .+        ..+++.++|+++++.||+|+.||.|.+
T Consensus       264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~  343 (641)
T KOG0772|consen  264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQI  343 (641)
T ss_pred             cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceee
Confidence            35788999999999976 478999999999999998764321 11        126788999999999999999999999


Q ss_pred             EeCCCCCCCCcceeeecccc--ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe-EEEEEecC--CCceeEEEEecCCCc
Q psy17243        134 WPTSPQTHKDDERFTVSHSE--EITCFTVTWDSQYLITGSRDMSLKVWQVVGGK-LAQVLVGH--TDHVSCVAVAVTNKS  208 (392)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~--~~~v~~~~~~~~~~~  208 (392)
                      |+...........+..+|..  .|+|+.|+++|++|++-+.|+++++||+++.+ ++....+-  .-+-+.++|+ ++..
T Consensus       344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS-Pd~k  422 (641)
T KOG0772|consen  344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS-PDDK  422 (641)
T ss_pred             eecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC-CCce
Confidence            99876666666777778877  99999999999999999999999999998764 55544432  2345778999 6788


Q ss_pred             EEEEec------CCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEE
Q psy17243        209 LVVSGS------KDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       209 ~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~  253 (392)
                      +|++|.      ..|.+.+||..+...++.+.-....|..+.|+|--..+.
T Consensus       423 li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~  473 (641)
T KOG0772|consen  423 LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF  473 (641)
T ss_pred             EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence            888876      346899999999999998887788999999999533333

>KOG1539|consensus

Probab=99.96  E-value=7.9e-28  Score=211.65  Aligned_cols=304  Identities=18%  Similarity=0.270  Sum_probs=234.1

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCCceeEEec-ccccceEEEEEecC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSD   79 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~   79 (392)
                      |..+|+|.+++++.++.+.+++...+.|+++.|..||. .+++|+..|.+.+||++..+.+..+. .|.+.|....|.|.
T Consensus       220 G~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~  299 (910)
T KOG1539|consen  220 GLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG  299 (910)
T ss_pred             eccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC
Confidence            78899999999999999999994459999999999987 56677777999999999888877666 67788888888888


Q ss_pred             CCEEEEEeCCCeEEEEEcCCc------------------------------------------------------e----
Q psy17243         80 SRRVVTSDKAGVIAVWVADNA------------------------------------------------------Q----  101 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~------------------------------------------------------~----  101 (392)
                      ...+++++.|+.+++|=.+++                                                      +    
T Consensus       300 epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~  379 (910)
T KOG1539|consen  300 EPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNK  379 (910)
T ss_pred             CceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccc
Confidence            888888888887777722200                                                      0    


Q ss_pred             ----ee-----------------------------------------------------ee------cccceeEEEEeCC
Q psy17243        102 ----LL-----------------------------------------------------YS------ALGPSKCLTVTHN  118 (392)
Q Consensus       102 ----~~-----------------------------------------------------~~------~~~~~~~~~~~~~  118 (392)
                          .+                                                     ..      ....+.++++++-
T Consensus       380 ~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C  459 (910)
T KOG1539|consen  380 KRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC  459 (910)
T ss_pred             cccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc
Confidence                00                                                     00      0012356788888


Q ss_pred             CCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCcee
Q psy17243        119 MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVS  198 (392)
Q Consensus       119 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~  198 (392)
                      |++.+.|+..|.|.+|++.++-..........|..+|+.++...-++.+++++.+|.+.+||..+...+..+. -...++
T Consensus       460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~  538 (910)
T KOG1539|consen  460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSIT  538 (910)
T ss_pred             CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcc
Confidence            9999999999999999998665444443345899999999998888999999999999999999888777776 456777


Q ss_pred             EEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCcccccccccccc
Q psy17243        199 CVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSL  278 (392)
Q Consensus       199 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (392)
                      ++..+ ....+++.+..|-.|+++|..+.+.++.+.+|.+.|++++|||||++++++..++.+                 
T Consensus       539 ~iv~h-r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tI-----------------  600 (910)
T KOG1539|consen  539 GIVYH-RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTI-----------------  600 (910)
T ss_pred             eeeee-ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcE-----------------
Confidence            88887 667788889999999999999999999999999999999999999999986533222                 


Q ss_pred             ceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhhhcccChH-HHHHHhhC
Q psy17243        279 DTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFD-QLEALWNK  352 (392)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d-~~i~~Wd~  352 (392)
                        ..|....++....+.+...                         .-...|||+|.+|| |++.| .-|++|--
T Consensus       601 --r~wDlpt~~lID~~~vd~~-------------------------~~sls~SPngD~LA-T~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  601 --RTWDLPTGTLIDGLLVDSP-------------------------CTSLSFSPNGDFLA-TVHVDQNGIYLWSN  647 (910)
T ss_pred             --EEEeccCcceeeeEecCCc-------------------------ceeeEECCCCCEEE-EEEecCceEEEEEc
Confidence              2233333332222111111                         11126999999999 77777 67999964

>KOG2106|consensus

Probab=99.96  E-value=1.4e-26  Score=192.98  Aligned_cols=349  Identities=13%  Similarity=0.161  Sum_probs=248.8

Q ss_pred             cCCeEEEEECCCccceee---eccC-CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          4 MDCLVNVWQMNSHELQST---MEGH-LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~---~~~h-~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      ..|.+..|+.+.+.+.+.   ++.+ +..|.|++|.++|. +++|..+|.|.||+..+.+..+....|++.|.+++...+
T Consensus       220 Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~  298 (626)
T KOG2106|consen  220 GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD  298 (626)
T ss_pred             CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC
Confidence            357899999987765543   4433 36699999999997 789999999999999888888887799999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeec--------------------------------------------ccceeEEEE
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYSA--------------------------------------------LGPSKCLTV  115 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------------------------------------~~~~~~~~~  115 (392)
                      |..| +|+.|..|..||-. -+.++..                                            ......++.
T Consensus       299 Gtll-SGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~  376 (626)
T KOG2106|consen  299 GTLL-SGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT  376 (626)
T ss_pred             ccEe-ecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence            8654 59999999999832 1111100                                            011235778


Q ss_pred             eCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCC
Q psy17243        116 THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTD  195 (392)
Q Consensus       116 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  195 (392)
                      +|+.+++++++.|+.+++|+-      ...........++.|+.|+|.| .++.|...|...+.|.++...+..-.. ..
T Consensus       377 hps~~q~~T~gqdk~v~lW~~------~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~  448 (626)
T KOG2106|consen  377 HPSKNQLLTCGQDKHVRLWND------HKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NE  448 (626)
T ss_pred             CCChhheeeccCcceEEEccC------CceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CC
Confidence            899999999999999999981      2233334456889999999999 999999999999999999666655554 88


Q ss_pred             ceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee-ee-cccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccc
Q psy17243        196 HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH-FL-AGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLK  273 (392)
Q Consensus       196 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  273 (392)
                      ++++++|+ +++.+|+.|+.|+.|+||.+....... .. +.+.++|+.+.|++|++++.+.+-+..+..+....-..  
T Consensus       449 ~ls~v~ys-p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~--  525 (626)
T KOG2106|consen  449 QLSVVRYS-PDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQ--  525 (626)
T ss_pred             ceEEEEEc-CCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcc--
Confidence            99999999 789999999999999999987654333 22 22347999999999999999987665544442111111  


Q ss_pred             cccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCC
Q psy17243        274 KEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKK  353 (392)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~  353 (392)
                       ..+.+...|.....               .-.|.+.++.+++..-       ..+-+.+.+.|| +|.+.|.|+|+...
T Consensus       526 -~ts~kDvkW~t~~c---------------~lGF~v~g~s~~t~i~-------a~~rs~~~~~lA-~gdd~g~v~lf~yP  581 (626)
T KOG2106|consen  526 -ITSVKDVKWATYTC---------------TLGFEVFGGSDGTDIN-------AVARSHCEKLLA-SGDDFGKVHLFSYP  581 (626)
T ss_pred             -cceecceeeeeeEE---------------EEEEEEecccCCchHH-------Hhhhhhhhhhhh-ccccCceEEEEccc
Confidence             11133333432211               0112344443333221       125678899998 98888999999775


Q ss_pred             CCCCccccccccccccCccccccccCccCCCCccccc
Q psy17243        354 SPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d~  390 (392)
                      -............+.+.+.+++|+-+...|.+...|.
T Consensus       582 c~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~  618 (626)
T KOG2106|consen  582 CSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDT  618 (626)
T ss_pred             cCCCcccceeeccccceeEEEEEeeCCceEEecCCCc
Confidence            5444333344455555677799998877776433664

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=2.7e-26  Score=197.32  Aligned_cols=248  Identities=14%  Similarity=0.104  Sum_probs=183.9

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeE-EEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      +++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+
T Consensus         6 s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~   83 (300)
T TIGR03866         6 SNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPN   83 (300)
T ss_pred             EecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCC
Confidence            46789999999999999888887654 46789999999876 5677889999999999988877765443 567899999


Q ss_pred             CCEEEEE-eCCCeEEEEEcCCceeeeecc--cceeEEEEeCCCCEEEEecCCC-cEEEEeCCCCCCCCcceeeeccccce
Q psy17243         80 SRRVVTS-DKAGVIAVWVADNAQLLYSAL--GPSKCLTVTHNMKYIVSGDGDN-SLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        80 ~~~l~~~-~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      ++.++++ ..++.+++||+.+.+.+..+.  .....+.++|++++++++..++ .+.+||..+....   ... ......
T Consensus        84 g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~---~~~-~~~~~~  159 (300)
T TIGR03866        84 GKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV---DNV-LVDQRP  159 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE---EEE-EcCCCc
Confidence            9987665 568999999999987766554  3457899999999999988765 4667787643221   111 223345


Q ss_pred             EEEEEEcCCCEEEEe-eCCCcEEEEEcCCCeEEEEEecCC-----C--ceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        156 TCFTVTWDSQYLITG-SRDMSLKVWQVVGGKLAQVLVGHT-----D--HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-----~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      ..++|+|++++|+++ ..++.|.+||+++++.+..+..+.     .  ....++|+|.+...+++...++.+.+||++++
T Consensus       160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            778999999988655 458999999999988777654321     1  23467888444443455556778999999988


Q ss_pred             ceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        228 GEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       228 ~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      +.+..+. +...+.+++|+|+|+.++++
T Consensus       240 ~~~~~~~-~~~~~~~~~~~~~g~~l~~~  266 (300)
T TIGR03866       240 EVLDYLL-VGQRVWQLAFTPDEKYLLTT  266 (300)
T ss_pred             cEEEEEE-eCCCcceEEECCCCCEEEEE
Confidence            7765543 33467778888887776653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106|consensus

Probab=99.96  E-value=4.1e-27  Score=196.15  Aligned_cols=328  Identities=16%  Similarity=0.255  Sum_probs=233.9

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecC--CCCeEEEE--eCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSG--SEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      -.|++||..+...+..+-.....|.|++|++  .|.+|+.-  +.+..+.+||...+......+..+..|....|+|.+.
T Consensus       134 phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~  213 (626)
T KOG2106|consen  134 PHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP  213 (626)
T ss_pred             CeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCC
Confidence            3699999888888888877888999999999  34555443  4567799999999988888888888899999999998


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeee-------cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccc
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLYS-------ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  154 (392)
                      .+++....+.+.+|+++.+...+.       ....+.|++|.+++. +++|..+|.|.+|+.......   +....|++.
T Consensus       214 nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~---k~~~aH~gg  289 (626)
T KOG2106|consen  214 NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS---KQVHAHDGG  289 (626)
T ss_pred             cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE---eEeeecCCc
Confidence            888888899999999998865432       124788999999886 679999999999998643322   223389999


Q ss_pred             eEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEE-----------------------------------------EEecC
Q psy17243        155 ITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQ-----------------------------------------VLVGH  193 (392)
Q Consensus       155 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------------------------------------~~~~~  193 (392)
                      |.+++...+|.+|- |+.|..|..||-. -+.++                                         ...+|
T Consensus       290 v~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh  367 (626)
T KOG2106|consen  290 VFSLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGH  367 (626)
T ss_pred             eEEEEEecCccEee-cCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEec
Confidence            99999999986555 9999999999831 11110                                         11346


Q ss_pred             CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccc
Q psy17243        194 TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLK  273 (392)
Q Consensus       194 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  273 (392)
                      ......++.+ +..+++++++.|+.+++|+  ..+++.... -..++.++.|+|.| .++.+.-.++        +-++.
T Consensus       368 ~delwgla~h-ps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~--------w~V~d  434 (626)
T KOG2106|consen  368 GDELWGLATH-PSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGR--------WFVLD  434 (626)
T ss_pred             ccceeeEEcC-CChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccce--------EEEEe
Confidence            6677778888 5666778888999999998  344444332 45678889999998 6666542211        00000


Q ss_pred             cccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCC
Q psy17243        274 KEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKK  353 (392)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~  353 (392)
                      .+.                             +.+++--.|       ........|+|||.+|| .|+.|+.|+||.+.
T Consensus       435 ~e~-----------------------------~~lv~~~~d-------~~~ls~v~ysp~G~~lA-vgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  435 TET-----------------------------QDLVTIHTD-------NEQLSVVRYSPDGAFLA-VGSHDNHIYIYRVS  477 (626)
T ss_pred             ccc-----------------------------ceeEEEEec-------CCceEEEEEcCCCCEEE-EecCCCeEEEEEEC
Confidence            000                             000110000       00011126999999999 89999999999998


Q ss_pred             CCCCccccccccccccCccccccccCccCCCCccccc
Q psy17243        354 SPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d~  390 (392)
                      ...+.-........ +.++.|.||+|+++|++.+.|+
T Consensus       478 ~~g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~~S~d~  513 (626)
T KOG2106|consen  478 ANGRKYSRVGKCSG-SPITHLDWSSDSQFLVSNSGDY  513 (626)
T ss_pred             CCCcEEEEeeeecC-ceeEEeeecCCCceEEeccCce
Confidence            77663222222333 5677799999999999877665

>KOG1063|consensus

Probab=99.96  E-value=1.2e-27  Score=206.52  Aligned_cols=376  Identities=16%  Similarity=0.239  Sum_probs=265.6

Q ss_pred             CccCCeEEEEECC--CccceeeeccCCcCeeEEEecCCC---CeEEEEeCCCeEEEEeCCCCc-----------------
Q psy17243          2 GGMDCLVNVWQMN--SHELQSTMEGHLNTVSCVAISPNS---IFAVSGSEDNTAKVWGLTLGS-----------------   59 (392)
Q Consensus         2 g~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~~dg~v~iwd~~~~~-----------------   59 (392)
                      |+.+..|.++.-.  +.+.+..+.||.+.|.+++|...+   -+|+++|.|..|+||.+.-+.                 
T Consensus       165 Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~  244 (764)
T KOG1063|consen  165 GGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL  244 (764)
T ss_pred             cCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence            6777888888754  456778899999999999998744   388999999999999764221                 


Q ss_pred             ----eeE----------EecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee-------eecc---cceeEEEE
Q psy17243         60 ----VVS----------TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL-------YSAL---GPSKCLTV  115 (392)
Q Consensus        60 ----~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------~~~~---~~~~~~~~  115 (392)
                          ...          .+.+|++.|+++.|+|.+..|++++.|.++.+|...+..-+       ....   +.-....|
T Consensus       245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw  324 (764)
T KOG1063|consen  245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW  324 (764)
T ss_pred             ceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence                111          12389999999999999999999999999999987765221       1111   12456789


Q ss_pred             eCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC----eEEEEEe
Q psy17243        116 THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG----KLAQVLV  191 (392)
Q Consensus       116 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~  191 (392)
                      +|+++.+++-+..|..++|.......-.......+|...|..++|.|.|.+|++.+.|.+-++|-.-..    ..+..-+
T Consensus       325 ~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ  404 (764)
T KOG1063|consen  325 SPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ  404 (764)
T ss_pred             cCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc
Confidence            999999999999999999984333333445556689999999999999999999999999999875411    2233334


Q ss_pred             cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC--------------------------------------------
Q psy17243        192 GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG--------------------------------------------  227 (392)
Q Consensus       192 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------------------------------------  227 (392)
                      -|...++|+++- +....+++|.....+|+|+....                                            
T Consensus       405 iHGyDl~c~~~v-n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~  483 (764)
T KOG1063|consen  405 IHGYDLTCLSFV-NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGG  483 (764)
T ss_pred             cccccceeeehc-cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccc
Confidence            578889999998 44778889999999999976421                                            


Q ss_pred             --------------------------------ceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccc
Q psy17243        228 --------------------------------GEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKE  275 (392)
Q Consensus       228 --------------------------------~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (392)
                                                      -.++.+.+|...|.+++.+|+|++++++.+.........-++..    
T Consensus       484 ~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t----  559 (764)
T KOG1063|consen  484 EAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNT----  559 (764)
T ss_pred             ccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEec----
Confidence                                            01123447888999999999999999988654332221111111    


Q ss_pred             cccceeEEEe---ccCCcceeEEEeecccccceeEEEeeccccceecceeccC-----------CCC------CCChhhh
Q psy17243        276 VSLDTYTWQR---KYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNV-----------GSQ------GLGPEQA  335 (392)
Q Consensus       276 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~-----------~~~------~~s~dg~  335 (392)
                           -.|..   ..+|...   +.....+++++|+++.|+|.+..+|.....           .|.      .|+||++
T Consensus       560 -----~~W~~~~~L~~HsLT---VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~  631 (764)
T KOG1063|consen  560 -----ANWLQVQELEGHSLT---VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK  631 (764)
T ss_pred             -----cchhhhheecccceE---EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc
Confidence                 11211   1244443   444556778999999999999888865211           111      8999999


Q ss_pred             hhhcccChHHHHHHhhCCCC--CCccccccccccccCcccccccc----CccCCCCcccccCC
Q psy17243        336 ALAQSQHFDQLEALWNKKSP--PRSRRFEHSMSKQNSYSSRQHSV----DTDELSSPVDEFGE  392 (392)
Q Consensus       336 ~la~s~~~d~~i~~Wd~~~~--~~~~~~~~~~~~~~~~~~~~fsp----dg~~l~~~~~d~~~  392 (392)
                      ++| |++.|+.|++|...+.  ....++ ..+.....++.+++-|    +-..+++.+-+.||
T Consensus       632 ~Fa-TaSRDK~VkVW~~~~~~d~~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~Ge  692 (764)
T KOG1063|consen  632 YFA-TASRDKKVKVWEEPDLRDKYISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGE  692 (764)
T ss_pred             eeE-EecCCceEEEEeccCchhhhhhhh-chhccCCceeeEEeeccccccccceEEEEecccE
Confidence            988 9999999999998877  332211 2333344455555443    32335544444443

>KOG0268|consensus

Probab=99.96  E-value=5.8e-28  Score=193.28  Aligned_cols=255  Identities=16%  Similarity=0.209  Sum_probs=208.9

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|++||+.+.++...++.|.+.|..|++..  ..+++++.|.+|+.|.++- .++.++. .+..+..+.-+..+
T Consensus        84 SGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~til-g~s~~~gIdh~~~~  159 (433)
T KOG0268|consen   84 SGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTIL-GKSVYLGIDHHRKN  159 (433)
T ss_pred             ccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeee-cccccccccccccc
Confidence            689999999999999999999999999999999987  5688999999999999765 4666665 35667778777777


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeecc---cceeEEEEeCCC-CEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSAL---GPSKCLTVTHNM-KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      ..+++++.+  |.|||.....++..+.   ..+.++.++|.. ..|+++..|+.|.+||++.......+..    ...-+
T Consensus       160 ~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~----~mRTN  233 (433)
T KOG0268|consen  160 SVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL----TMRTN  233 (433)
T ss_pred             ccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee----ecccc
Confidence            788888754  9999998877776654   366899999955 4666777999999999996655444333    34567


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      .|+|+|..-.+.++++|..++.||++.. .++..+.+|.+.|..+.|+ |.|.-+++||.|.+|+||..+.+.....+..
T Consensus       234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs-ptG~EfvsgsyDksIRIf~~~~~~SRdiYht  312 (433)
T KOG0268|consen  234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS-PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT  312 (433)
T ss_pred             ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC-CCcchhccccccceEEEeecCCCcchhhhhH
Confidence            8999998888999999999999999875 5778889999999999999 6677789999999999999998765544322


Q ss_pred             -cccceeEEEEcCCCeEEEEcCCCCCCCCCCC
Q psy17243        236 -HLGCVTCVKLAGDGTVAMSDLPPSRPAGPKR  266 (392)
Q Consensus       236 -~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~  266 (392)
                       .-+.|.++.||-|.+++++++++.....|..
T Consensus       313 kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  313 KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             hhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence             2347999999999999999998876655543

>KOG0310|consensus

Probab=99.96  E-value=7.5e-27  Score=193.85  Aligned_cols=221  Identities=23%  Similarity=0.347  Sum_probs=190.6

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      .|...|.|+|+|.++...++.+.+|+.+|..+.|+| ++..|++|+.|+.+++||+.+......+.+|...|.+.+|+|.
T Consensus        85 aGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~  164 (487)
T KOG0310|consen   85 AGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPA  164 (487)
T ss_pred             ccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccC
Confidence            477889999999888888999999999999999999 5567889999999999999999887789999999999999997


Q ss_pred             CC-EEEEEeCCCeEEEEEcCCc-eeeee--cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         80 SR-RVVTSDKAGVIAVWVADNA-QLLYS--ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        80 ~~-~l~~~~~d~~i~iwd~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      .. .+++|+.||.|++||++.. ..+.+  +..|+..+.+-|.|..+++++. ..+++||+.++.+...  ....|...|
T Consensus       165 ~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~--~~~~H~KtV  241 (487)
T KOG0310|consen  165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT--SMFNHNKTV  241 (487)
T ss_pred             CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh--hhhcccceE
Confidence            54 7899999999999999877 44444  4568999999999999998875 6799999975543322  223499999


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      +|+++..++..|++++-|+.+++||+.+.+.+..+. ..++|.+++.+ +++..++.|-.||.+.+-+...
T Consensus       242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs-~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVS-PDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             EEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEec-CCCceEEEecccceeeeehhhc
Confidence            999999999999999999999999999989888887 67899999999 6777888899999988775443

>KOG0973|consensus

Probab=99.96  E-value=9.8e-28  Score=217.25  Aligned_cols=313  Identities=17%  Similarity=0.211  Sum_probs=216.9

Q ss_pred             CCcCeeEEEecCCCCeEEEEe--CCCeEEEEeCCC------------CceeEEecccccceEEEEEecCCCEEEEEeCCC
Q psy17243         25 HLNTVSCVAISPNSIFAVSGS--EDNTAKVWGLTL------------GSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG   90 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   90 (392)
                      +...|.++..+|++..++||+  .||.+.||+.+.            .+.+.++..|.+.|+|+.|+|||++|++|++|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            456699999999999999999  899999998642            244567778999999999999999999999999


Q ss_pred             eEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEe
Q psy17243         91 VIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITG  170 (392)
Q Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  170 (392)
                      .|.+|.... ...               +..+-+.+....+.-|        .......+|...|..++|+|++.+|+++
T Consensus        92 ~v~iW~~~~-~~~---------------~~~fgs~g~~~~vE~w--------k~~~~l~~H~~DV~Dv~Wsp~~~~lvS~  147 (942)
T KOG0973|consen   92 LVMIWERAE-IGS---------------GTVFGSTGGAKNVESW--------KVVSILRGHDSDVLDVNWSPDDSLLVSV  147 (942)
T ss_pred             eEEEeeecc-cCC---------------ccccccccccccccee--------eEEEEEecCCCccceeccCCCccEEEEe
Confidence            999998764 100               0111111112222223        2334455799999999999999999999


Q ss_pred             eCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccc------ceeEEE
Q psy17243        171 SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG------CVTCVK  244 (392)
Q Consensus       171 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~  244 (392)
                      +.|++|.||+.++.+.+..+.+|.+.|..+.|. |-+++|++-+.|++|+||+..+....+.+..+-.      -+..+.
T Consensus       148 s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS  226 (942)
T KOG0973|consen  148 SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS  226 (942)
T ss_pred             cccceEEEEccccceeeeeeecccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence            999999999999999999999999999999999 7789999999999999999888777666654432      577899


Q ss_pred             EcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEE-EeccCCcceeEEEeecccccceeEEEeeccccceecceec
Q psy17243        245 LAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTW-QRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKD  323 (392)
Q Consensus       245 ~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~  323 (392)
                      |||||.++++.-.-..    ..+...++.++.    |.. ....||......+.+-+...              +.... 
T Consensus       227 WSPDG~~las~nA~n~----~~~~~~IieR~t----Wk~~~~LvGH~~p~evvrFnP~lf--------------e~~~~-  283 (942)
T KOG0973|consen  227 WSPDGHHLASPNAVNG----GKSTIAIIERGT----WKVDKDLVGHSAPVEVVRFNPKLF--------------ERNNK-  283 (942)
T ss_pred             cCCCcCeecchhhccC----CcceeEEEecCC----ceeeeeeecCCCceEEEEeChHHh--------------ccccc-
Confidence            9999999999642211    111112222111    110 11236655443333222211              00000 


Q ss_pred             cCCCCCCChhhhh-hhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCcccc
Q psy17243        324 NVGSQGLGPEQAA-LAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDE  389 (392)
Q Consensus       324 ~~~~~~~s~dg~~-la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d  389 (392)
                       .|. .-.|+..| ++++|+.|++|-||....+.+ ......+ ....+.+++|||||..|.+.+-|
T Consensus       284 -ng~-~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP-l~vi~~l-f~~SI~DmsWspdG~~LfacS~D  346 (942)
T KOG0973|consen  284 -NGT-STQPNCYYCIAAVGSQDRSLSVWNTALPRP-LFVIHNL-FNKSIVDMSWSPDGFSLFACSLD  346 (942)
T ss_pred             -cCC-ccCCCcceEEEEEecCCccEEEEecCCCCc-hhhhhhh-hcCceeeeeEcCCCCeEEEEecC
Confidence             000 11233334 567999999999998854433 2223333 24568889999999877654444

>KOG2048|consensus

Probab=99.96  E-value=3.4e-26  Score=197.13  Aligned_cols=343  Identities=15%  Similarity=0.175  Sum_probs=240.6

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCcee-EEeccc-ccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV-STFKSH-QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL  102 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  102 (392)
                      -..+|.+|+|+.+.+.||.+-.||.|.||++..+-.. ..+.++ +..|.+++|. ++..|++.+.+|.|.-||+.+++.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence            4578999999999999999999999999999886443 344444 4679999999 566899999999999999999988


Q ss_pred             eeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEE
Q psy17243        103 LYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVW  179 (392)
Q Consensus       103 ~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  179 (392)
                      ++.+.   +.+.+++.+|.+..+++|+.||.+..++...+.... ........+.+.+++|+|++..++.|+.||.|++|
T Consensus       103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~-~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw  181 (691)
T KOG2048|consen  103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY-KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW  181 (691)
T ss_pred             eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE-EeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence            87654   478999999999999999999977777765432221 22222346889999999999999999999999999


Q ss_pred             EcCCCeEEEEEec--------CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeE
Q psy17243        180 QVVGGKLAQVLVG--------HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTV  251 (392)
Q Consensus       180 d~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~  251 (392)
                      |..++..++....        ...-|.++.+-  ....|++|..-|+|.+||...+.+++.+..|...|.+++..+++..
T Consensus       182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~  259 (691)
T KOG2048|consen  182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR  259 (691)
T ss_pred             EcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe
Confidence            9999887763221        22346677776  4567899999999999999999999999999999999999999777


Q ss_pred             EEEcCCCCCCCCCCCccccccccccccceeEEEe---ccCCcceeEEEeecccccceeEEEeeccccceecceeccC---
Q psy17243        252 AMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQR---KYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNV---  325 (392)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~---  325 (392)
                      ++++.-+.+..       .+......-   +|..   ...|...+-.+...+.     .+++|+.|.++.+...+..   
T Consensus       260 vfsaGvd~~ii-------~~~~~~~~~---~wv~~~~r~~h~hdvrs~av~~~-----~l~sgG~d~~l~i~~s~~~~~~  324 (691)
T KOG2048|consen  260 VFSAGVDPKII-------QYSLTTNKS---EWVINSRRDLHAHDVRSMAVIEN-----ALISGGRDFTLAICSSREFKNM  324 (691)
T ss_pred             EEEccCCCceE-------EEEecCCcc---ceeeeccccCCcccceeeeeecc-----eEEecceeeEEEEccccccCch
Confidence            77765332221       111111100   1221   2233334333443333     6799999987776544321   


Q ss_pred             CCC--CCChhhhhhhcccCh--------HHHHHHhhCCCC----CCcccc--ccccccccCccccccccCccCCCCcc
Q psy17243        326 GSQ--GLGPEQAALAQSQHF--------DQLEALWNKKSP----PRSRRF--EHSMSKQNSYSSRQHSVDTDELSSPV  387 (392)
Q Consensus       326 ~~~--~~s~dg~~la~s~~~--------d~~i~~Wd~~~~----~~~~~~--~~~~~~~~~~~~~~fspdg~~l~~~~  387 (392)
                      .+.  ...|.+..++ .+..        +..+.+|.+...    +.+...  ...+.....+...+.||||++||.+.
T Consensus       325 ~h~~~~~~p~~~~v~-~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st  401 (691)
T KOG2048|consen  325 DHRQKNLFPASDRVS-VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST  401 (691)
T ss_pred             hhhccccccccceee-cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEee
Confidence            111  2233333333 2333        345666765544    222221  23333444577799999999999543

>KOG2048|consensus

Probab=99.96  E-value=2e-26  Score=198.52  Aligned_cols=251  Identities=17%  Similarity=0.227  Sum_probs=204.3

Q ss_pred             CccCCeEEEEECCCc-cceeeeccC-CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          2 GGMDCLVNVWQMNSH-ELQSTMEGH-LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         2 g~~dg~i~vwd~~~~-~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      +-.||.|.+|++... -....+.++ ...|.+++|++.+ .|++.+.+|.|.-||+.++++...+....+.|.+++.+|.
T Consensus        43 sRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~  121 (691)
T KOG2048|consen   43 SRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE  121 (691)
T ss_pred             eccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc
Confidence            457899999999764 344556665 4679999999655 5788889999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeee-----cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCccee-----ee
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYS-----ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERF-----TV  149 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~  149 (392)
                      +..+++|+.||.++.++...++..+.     ..+.+.++.|+|++..++.|+.||.|++||...+........     ..
T Consensus       122 ~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k  201 (691)
T KOG2048|consen  122 NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK  201 (691)
T ss_pred             cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccccc
Confidence            99999999999888888888776543     345788999999999999999999999999986654441111     11


Q ss_pred             ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      ....-|.++.|..++ .|++|...|+|.+||...+..++.+..|...|.+++.. ++++.+++++.|+.|.-|...+.+.
T Consensus       202 ~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  202 REPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             CCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCcc
Confidence            233456777777554 79999999999999999999999999999999999999 7788899999999999998876644


Q ss_pred             ----eeeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        230 ----EHFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       230 ----~~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                          ......|...|.+++..++  .++++..
T Consensus       280 ~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~  309 (691)
T KOG2048|consen  280 EWVINSRRDLHAHDVRSMAVIEN--ALISGGR  309 (691)
T ss_pred             ceeeeccccCCcccceeeeeecc--eEEecce
Confidence                2234467888999998876  5555543

>KOG0300|consensus

Probab=99.96  E-value=6.3e-27  Score=184.50  Aligned_cols=237  Identities=20%  Similarity=0.321  Sum_probs=197.1

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      .++++.+.+|.+.|+.++.......+.+++.|.+.+||.++++.++.++.+|.+.|+++.|++.+.++++++.|++-.||
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            45677889999999999998877899999999999999999999999999999999999999999999999999999999


Q ss_pred             Ec----CCce------------------------------------ee---eecccceeEEEEeCCCCEEEEecCCCcEE
Q psy17243         96 VA----DNAQ------------------------------------LL---YSALGPSKCLTVTHNMKYIVSGDGDNSLR  132 (392)
Q Consensus        96 d~----~~~~------------------------------------~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  132 (392)
                      ..    +..+                                    ++   ..+...+.+..|-..++.+++++.|.+-.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            51    1000                                    00   11122344556777889999999999999


Q ss_pred             EEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEEE
Q psy17243        133 IWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       133 ~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~  211 (392)
                      +||++++.   ......+|....+.++-+|..+++++.+.|.+.++||++.. ..+..|++|...|+++.|.  .+..++
T Consensus       298 lwDVEtge---~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~--~dd~vV  372 (481)
T KOG0300|consen  298 LWDVETGE---VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN--TDDRVV  372 (481)
T ss_pred             eeeeccCc---eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe--cCCcee
Confidence            99998544   44455689999999999999999999999999999999854 4567899999999999998  455689


Q ss_pred             EecCCCeEEEEECCCCc-eeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        212 SGSKDSNLIVWDMETGG-EEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       212 ~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      +|+.|.+|+|||+++.+ ++.++. ...+++.++.+..+.+++.-.+.
T Consensus       373 SgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDN  419 (481)
T KOG0300|consen  373 SGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDN  419 (481)
T ss_pred             ecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCC
Confidence            99999999999999765 455555 56788999999888888875543

>KOG2055|consensus

Probab=99.96  E-value=3.8e-27  Score=194.25  Aligned_cols=280  Identities=13%  Similarity=0.202  Sum_probs=217.2

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCC--CCceeEEecccccceEEEEEecCCC-EEEEEeCCCeEEEEEcCCcee
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLT--LGSVVSTFKSHQSTILAVAVLSDSR-RVVTSDKAGVIAVWVADNAQL  102 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~  102 (392)
                      .+.|+++.|+|....|++|+.|++++||.++  ....++.+.....+|.+..|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            4789999999999999999999999999875  3345677777788999999999999 899999999999999998876


Q ss_pred             eeecc------cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcE
Q psy17243        103 LYSAL------GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSL  176 (392)
Q Consensus       103 ~~~~~------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  176 (392)
                      .....      .......+++++++|+..+..|.|.+....+.......    ...+.|..++|+.+++.|++++.+|.|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~----KieG~v~~~~fsSdsk~l~~~~~~GeV  368 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF----KIEGVVSDFTFSSDSKELLASGGTGEV  368 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee----eeccEEeeEEEecCCcEEEEEcCCceE
Confidence            43221      24457889999999999999999999987654433332    346889999999999999999999999


Q ss_pred             EEEEcCCCeEEEEEecCCC-ceeEEEEecCCCcEEEEecCCCeEEEEECCC------CceeeeecccccceeEEEEcCCC
Q psy17243        177 KVWQVVGGKLAQVLVGHTD-HVSCVAVAVTNKSLVVSGSKDSNLIVWDMET------GGEEHFLAGHLGCVTCVKLAGDG  249 (392)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~~~~~~dg  249 (392)
                      .+||++...+++.+....+ .-++++.+ .++.+|++|+..|.|.|||.++      ++++..+..-...|++|.|++|.
T Consensus       369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~  447 (514)
T KOG2055|consen  369 YVWNLRQNSCLHRFVDDGSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA  447 (514)
T ss_pred             EEEecCCcceEEEEeecCccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence            9999999999998874322 23566777 6788999999999999999653      56777777777899999999999


Q ss_pred             eEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCC-
Q psy17243        250 TVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQ-  328 (392)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~-  328 (392)
                      ++++.++......                      ...-|.++......++..                   ....+++ 
T Consensus       448 qiLAiaS~~~kna----------------------lrLVHvPS~TVFsNfP~~-------------------n~~vg~vt  486 (514)
T KOG2055|consen  448 QILAIASRVKKNA----------------------LRLVHVPSCTVFSNFPTS-------------------NTKVGHVT  486 (514)
T ss_pred             hhhhhhhhccccc----------------------eEEEeccceeeeccCCCC-------------------CCcccceE
Confidence            9999876221110                      011233333322222111                   1123333 


Q ss_pred             --CCChhhhhhhcccChHHHHHHhhC
Q psy17243        329 --GLGPEQAALAQSQHFDQLEALWNK  352 (392)
Q Consensus       329 --~~s~dg~~la~s~~~d~~i~~Wd~  352 (392)
                        +|||.|-+|| .|.++|.+.||.+
T Consensus       487 c~aFSP~sG~lA-vGNe~grv~l~kL  511 (514)
T KOG2055|consen  487 CMAFSPNSGYLA-VGNEAGRVHLFKL  511 (514)
T ss_pred             EEEecCCCceEE-eecCCCceeeEee
Confidence              8999999999 8899999999976

>KOG0264|consensus

Probab=99.95  E-value=6.6e-27  Score=192.62  Aligned_cols=232  Identities=18%  Similarity=0.237  Sum_probs=190.2

Q ss_pred             cCCcCeeEEEecCCC-CeEEEEeCCCeEEEEeCCCCc----------eeEEecccccceEEEEEecCCC-EEEEEeCCCe
Q psy17243         24 GHLNTVSCVAISPNS-IFAVSGSEDNTAKVWGLTLGS----------VVSTFKSHQSTILAVAVLSDSR-RVVTSDKAGV   91 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~   91 (392)
                      .|.+.|+.+.+-|+. ..+++.+..+.|.|||..+..          +-..+.+|...-+++.|++... .|++++.|+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            499999999999955 567778888999999986432          1226778988788899988654 7899999999


Q ss_pred             EEEEEcCCcee----------eeecccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEE
Q psy17243         92 IAVWVADNAQL----------LYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTV  160 (392)
Q Consensus        92 i~iwd~~~~~~----------~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~  160 (392)
                      |.+||+.....          ...+...+..++|++ +...|++++.|+.+.|||+++. .........+|..++.|++|
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEe
Confidence            99999975433          123445677888988 5668889999999999999975 44555566689999999999


Q ss_pred             EcC-CCEEEEeeCCCcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC-----------
Q psy17243        161 TWD-SQYLITGSRDMSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG-----------  227 (392)
Q Consensus       161 ~~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------  227 (392)
                      +|- +..|++|+.|++|.+||+|+. +++..+.+|...|.++.|+|....+|++++.|+.+.|||+..-           
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d  360 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED  360 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence            995 567889999999999999986 5788999999999999999999999999999999999998742           


Q ss_pred             ---ceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        228 ---GEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       228 ---~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                         +++..-.||...|..+.|+|....++...
T Consensus       361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv  392 (422)
T KOG0264|consen  361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASV  392 (422)
T ss_pred             CCcceeEEecCcccccccccCCCCCCeEEEEe
Confidence               22345568999999999999988777654

>KOG1332|consensus

Probab=99.95  E-value=2.7e-27  Score=179.67  Aligned_cols=237  Identities=16%  Similarity=0.229  Sum_probs=195.5

Q ss_pred             ccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC---ceeEEecccccceEEEEEec--CCCEEEEEeCCCeEEEEEc
Q psy17243         23 EGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG---SVVSTFKSHQSTILAVAVLS--DSRRVVTSDKAGVIAVWVA   97 (392)
Q Consensus        23 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~   97 (392)
                      ..|.+.|..+...--|++||||+.|++|+|+.++..   +++.++.+|.++|..++|..  -|.+|++++.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            468899998888888999999999999999998765   46789999999999999976  6899999999999999999


Q ss_pred             CCceeee-----ecccceeEEEEeC--CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC---C---
Q psy17243         98 DNAQLLY-----SALGPSKCLTVTH--NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD---S---  164 (392)
Q Consensus        98 ~~~~~~~-----~~~~~~~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~---  164 (392)
                      ++++-.+     .+...+++++|.|  .|-.|++++.||.|.+.+++........+....|.-.|++++|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            9885432     3455788999887  4678999999999999999876444555566789999999999985   3   


Q ss_pred             --------CEEEEeeCCCcEEEEEcCCCe--EEEEEecCCCceeEEEEecCC---CcEEEEecCCCeEEEEECCCCc---
Q psy17243        165 --------QYLITGSRDMSLKVWQVVGGK--LAQVLVGHTDHVSCVAVAVTN---KSLVVSGSKDSNLIVWDMETGG---  228 (392)
Q Consensus       165 --------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~---  228 (392)
                              +.|++|+.|..|+||+..+++  ..+.+.+|.+.|..++|.|..   ...|+++++||++.||..+...   
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence                    569999999999999998763  345588999999999999754   4589999999999999876321   


Q ss_pred             eeeeecccccceeEEEEcCCCeEEEEcCCCC
Q psy17243        229 EEHFLAGHLGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       229 ~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      ....++.....+..++||..|.+|+....+.
T Consensus       248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdN  278 (299)
T KOG1332|consen  248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDN  278 (299)
T ss_pred             cccccccCCcceEEEEEeccccEEEEecCCc
Confidence            1123344556899999999999999876543

>KOG1036|consensus

Probab=99.95  E-value=7.4e-27  Score=183.24  Aligned_cols=274  Identities=18%  Similarity=0.252  Sum_probs=207.1

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee--
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL--  102 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--  102 (392)
                      ....|.++.|+|.+..|++++.||++++||+....+...++ |..++.+++|.+ ...+++|+.||.|+.+|+.++..  
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence            46789999999998899999999999999999887777777 899999999986 56899999999999999998754  


Q ss_pred             eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcC
Q psy17243        103 LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV  182 (392)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  182 (392)
                      +..+..++.|+...+....+++|+.|+.|++||.+..   ... ........|.++...  ++.|++|+.+..+.+||++
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~---~~~-~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLR  163 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK---VVV-GTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLR  163 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEEEEecccc---ccc-cccccCceEEEEecc--CCEEEEeecCceEEEEEcc
Confidence            6688889999999999999999999999999999842   111 112334577777664  7789999999999999999


Q ss_pred             CCeEEEEE--ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc----eeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        183 GGKLAQVL--VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG----EEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       183 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +.....+.  ...+-.+.|+++.| ++.=+++++-||.|.+=.++..+    .-..++.|..       +.++.-++.  
T Consensus       164 n~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~-------~~~~~~~~y--  233 (323)
T KOG1036|consen  164 NLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL-------SEKDTEIIY--  233 (323)
T ss_pred             cccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeec-------ccCCceEEE--
Confidence            87644322  23455789999996 55556778889998876666442    1223333311       112222221  


Q ss_pred             CCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhh
Q psy17243        257 PPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAA  336 (392)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~  336 (392)
                                                                                         .+...+|+|--..
T Consensus       234 -------------------------------------------------------------------PVNai~Fhp~~~t  246 (323)
T KOG1036|consen  234 -------------------------------------------------------------------PVNAIAFHPIHGT  246 (323)
T ss_pred             -------------------------------------------------------------------EeceeEeccccce
Confidence                                                                               1223357888777


Q ss_pred             hhcccChHHHHHHhhCCCCCCccccccccccc-cCccccccccCccCCCCccc
Q psy17243        337 LAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQ-NSYSSRQHSVDTDELSSPVD  388 (392)
Q Consensus       337 la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~-~~~~~~~fspdg~~l~~~~~  388 (392)
                      +| ||+.||-|.+||+...++..    .+... .++.+++|+.||..||+++.
T Consensus       247 fa-TgGsDG~V~~Wd~~~rKrl~----q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  247 FA-TGGSDGIVNIWDLFNRKRLK----QLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EE-ecCCCceEEEccCcchhhhh----hccCCCCceEEEEeccCCCeEEEEec
Confidence            88 99999999999998776633    33333 45777999999999997764

>KOG0646|consensus

Probab=99.95  E-value=7.4e-27  Score=192.83  Aligned_cols=240  Identities=19%  Similarity=0.329  Sum_probs=198.7

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEE
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVT   85 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   85 (392)
                      ..|.+|.+.........---.++|.+++-+|+|.+|+.|+..|.|++|.+.+|.++..+..|-..|+++.|+.|+.+|++
T Consensus        61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiT  140 (476)
T KOG0646|consen   61 PLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIIT  140 (476)
T ss_pred             ccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEe
Confidence            35778887655544433335688999999999999999989999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEEcCC---------ceeeee---cccceeEEEEeCC--CCEEEEecCCCcEEEEeCCCCCCCCcceeeecc
Q psy17243         86 SDKAGVIAVWVADN---------AQLLYS---ALGPSKCLTVTHN--MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH  151 (392)
Q Consensus        86 ~~~d~~i~iwd~~~---------~~~~~~---~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  151 (392)
                      |+.||.|.+|.+..         .+.++.   +.-+++.+.+.+.  ..++++++.|.++++||+..+    .+......
T Consensus       141 gskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----~LLlti~f  216 (476)
T KOG0646|consen  141 GSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG----VLLLTITF  216 (476)
T ss_pred             cCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc----eeeEEEec
Confidence            99999999997642         223333   3336666666553  568999999999999999744    33334456


Q ss_pred             ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC----------------eEEEEEecCCC--ceeEEEEecCCCcEEEEe
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG----------------KLAQVLVGHTD--HVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~  213 (392)
                      +..+.++++.|.++.+++|+.+|.|.+.++...                ..+..+.+|.+  .|+|++++ .++.+|++|
T Consensus       217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-~DgtlLlSG  295 (476)
T KOG0646|consen  217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-TDGTLLLSG  295 (476)
T ss_pred             CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe-cCccEEEee
Confidence            789999999999999999999999999887432                24456778888  99999999 899999999


Q ss_pred             cCCCeEEEEECCCCceeeeecccccceeEEEEcCCCe
Q psy17243        214 SKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT  250 (392)
Q Consensus       214 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~  250 (392)
                      +.||.|+|||+.+.++++++....++|+.+.+.|=-+
T Consensus       296 d~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  296 DEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             CCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence            9999999999999999998887788999999976433

>KOG0267|consensus

Probab=99.95  E-value=2.6e-28  Score=211.50  Aligned_cols=233  Identities=22%  Similarity=0.414  Sum_probs=213.4

Q ss_pred             eccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCce
Q psy17243         22 MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        22 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  101 (392)
                      +..|...|.++..-..++.+++|+.|..+.+|.+.....+..+.+|..+|.++.|+++...|++|+.+|+|++||++..+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            44688899999987788899999999999999998888888899999999999999999999999999999999999998


Q ss_pred             eeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEE
Q psy17243        102 LLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV  178 (392)
Q Consensus       102 ~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  178 (392)
                      .++.+.+   .+..+.|+|-+.+++.|+.|+.+.+||.+   .........+|...+.++.|+|+|++++.+++|..++|
T Consensus       104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R---k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki  180 (825)
T KOG0267|consen  104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR---KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKI  180 (825)
T ss_pred             hhhhhhccccCcceeeeccceEEeccccccccceehhhh---ccCceeeecCCcceeEEEeecCCCceeeccCCcceeee
Confidence            8776655   66788999999999999999999999997   55666666679999999999999999999999999999


Q ss_pred             EEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        179 WQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       179 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      ||+..++.+..|..|.+.+..+.|+ +.+-++++|+.|+++++||+++.+.+.........|.+..|+|+++.+.++...
T Consensus       181 ~d~~agk~~~ef~~~e~~v~sle~h-p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  181 WDLTAGKLSKEFKSHEGKVQSLEFH-PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ecccccccccccccccccccccccC-chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            9999999999999999999999999 778899999999999999999999988888888899999999999999998654

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=5.5e-25  Score=197.08  Aligned_cols=211  Identities=12%  Similarity=0.148  Sum_probs=162.8

Q ss_pred             EeCCCeEEEEeCCCCceeEEecccccceEEEEEecC-CCEEEEEeCCCeEEEEEcCCce-----------eeeeccccee
Q psy17243         44 GSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD-SRRVVTSDKAGVIAVWVADNAQ-----------LLYSALGPSK  111 (392)
Q Consensus        44 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~  111 (392)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+ +++|++|+.|+.|++||+.++.           .+..+...+.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            567889999998888888899999999999999997 7899999999999999997642           1233556789


Q ss_pred             EEEEeCCCCE-EEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEE
Q psy17243        112 CLTVTHNMKY-IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL  190 (392)
Q Consensus       112 ~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  190 (392)
                      +++|+|++.. +++++.|+.|++||++.....    ....+...|.+++|+|+|++|++++.|+.|+|||+++++.+..+
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~----~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA----FQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEE----EEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            9999998876 468899999999999854322    12235678999999999999999999999999999999999999


Q ss_pred             ecCCCceeEEE-----EecCCCcEEEEecCC----CeEEEEECCC-Cceeeeec--ccccceeEEEEcCCCeEEEEcCCC
Q psy17243        191 VGHTDHVSCVA-----VAVTNKSLVVSGSKD----SNLIVWDMET-GGEEHFLA--GHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       191 ~~~~~~v~~~~-----~~~~~~~~l~~~~~d----g~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      .+|.+.+....     |+ +++.+|++++.|    +.|+|||+++ .+++..+.  .+.+.+......++|.+++++..+
T Consensus       206 ~gH~g~~~s~~v~~~~fs-~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD  284 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLG-GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD  284 (568)
T ss_pred             ecccCCceeEEEEeeeEc-CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence            99988654433     33 456677776665    3799999995 45555443  223333333445567777776544


Q ss_pred             C
Q psy17243        259 S  259 (392)
Q Consensus       259 ~  259 (392)
                      .
T Consensus       285 ~  285 (568)
T PTZ00420        285 G  285 (568)
T ss_pred             C
Confidence            3

>KOG1332|consensus

Probab=99.95  E-value=2.1e-26  Score=174.84  Aligned_cols=223  Identities=18%  Similarity=0.243  Sum_probs=182.3

Q ss_pred             CCccCCeEEEEECCCc---cceeeeccCCcCeeEEEecC--CCCeEEEEeCCCeEEEEeCCCCce--eEEecccccceEE
Q psy17243          1 MGGMDCLVNVWQMNSH---ELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVWGLTLGSV--VSTFKSHQSTILA   73 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~   73 (392)
                      |+++|++|+|+...+.   +++.+|.+|.++|..++|..  -|.+||++++||.|.||.-+.++-  ......|...|++
T Consensus        28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNs  107 (299)
T KOG1332|consen   28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNS  107 (299)
T ss_pred             eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhccccee
Confidence            6789999999998653   57788999999999999966  789999999999999999887743  4456679999999


Q ss_pred             EEEecC--CCEEEEEeCCCeEEEEEcCCc------eeeeecccceeEEEEeCC---C-----------CEEEEecCCCcE
Q psy17243         74 VAVLSD--SRRVVTSDKAGVIAVWVADNA------QLLYSALGPSKCLTVTHN---M-----------KYIVSGDGDNSL  131 (392)
Q Consensus        74 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~---~-----------~~l~~~~~d~~i  131 (392)
                      ++|.|.  |-.|++++.||.|.+.+.+..      +....+...+++++|.|.   |           +.|++|+.|..|
T Consensus       108 V~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~V  187 (299)
T KOG1332|consen  108 VAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLV  187 (299)
T ss_pred             ecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccce
Confidence            999987  458899999999999987654      334456667888998885   3           569999999999


Q ss_pred             EEEeCCCCCCCCcceeeeccccceEEEEEEcCC----CEEEEeeCCCcEEEEEcCCCe---EEEEEecCCCceeEEEEec
Q psy17243        132 RIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS----QYLITGSRDMSLKVWQVVGGK---LAQVLVGHTDHVSCVAVAV  204 (392)
Q Consensus       132 ~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~  204 (392)
                      ++|+.....-. ......+|...|+.++|.|.-    .+|+++++||++.||..+...   ....+......+..+.|+ 
T Consensus       188 kiW~~~~~~w~-~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS-  265 (299)
T KOG1332|consen  188 KIWKFDSDSWK-LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWS-  265 (299)
T ss_pred             eeeecCCcchh-hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEe-
Confidence            99999876333 333356899999999999963    579999999999999876321   223344467889999999 


Q ss_pred             CCCcEEEEecCCCeEEEEECC
Q psy17243        205 TNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       205 ~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      ..+++|+.++.|+.|.+|.-.
T Consensus       266 ~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  266 LSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ccccEEEEecCCcEEEEEEeC
Confidence            788899999999999999754

>KOG0264|consensus

Probab=99.95  E-value=4.4e-26  Score=187.81  Aligned_cols=223  Identities=18%  Similarity=0.268  Sum_probs=184.1

Q ss_pred             CCccCCeEEEEECCCc----------cceeeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCc-------eeE
Q psy17243          1 MGGMDCLVNVWQMNSH----------ELQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGS-------VVS   62 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~-------~~~   62 (392)
                      |++..+.|.|||..+.          .+...|.+|...=++++|++. .-.|++++.|++|++||+....       ...
T Consensus       142 t~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~  221 (422)
T KOG0264|consen  142 TKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKT  221 (422)
T ss_pred             ecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceE
Confidence            4678899999998532          222378899998889999994 3479999999999999996543       345


Q ss_pred             EecccccceEEEEEecCC-CEEEEEeCCCeEEEEEcCCc--ee---eeecccceeEEEEeC-CCCEEEEecCCCcEEEEe
Q psy17243         63 TFKSHQSTILAVAVLSDS-RRVVTSDKAGVIAVWVADNA--QL---LYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWP  135 (392)
Q Consensus        63 ~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~--~~---~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d  135 (392)
                      .+.+|...|..++|++-. ..+.+++.|+.+.|||+++.  +.   ...+..++.|++|+| ++..||+|+.|++|.+||
T Consensus       222 ~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwD  301 (422)
T KOG0264|consen  222 IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWD  301 (422)
T ss_pred             EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEee
Confidence            678899999999999865 46788999999999999953  22   344567899999999 566788999999999999


Q ss_pred             CCCCCCCCcceeeeccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCC--------------eEEEEEecCCCceeEE
Q psy17243        136 TSPQTHKDDERFTVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVGG--------------KLAQVLVGHTDHVSCV  200 (392)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~~v~~~  200 (392)
                      ++....  .+....+|...|.++.|+|. ...|++++.|+.+.+||+..-              +++..-.||...|..+
T Consensus       302 lRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df  379 (422)
T KOG0264|consen  302 LRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF  379 (422)
T ss_pred             chhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccc
Confidence            996443  55666789999999999997 568899999999999999532              2345667899999999


Q ss_pred             EEecCCCcEEEEecCCCeEEEEECC
Q psy17243        201 AVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       201 ~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      .|+|.....+++.+.|+.+.||+..
T Consensus       380 sWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  380 SWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cCCCCCCeEEEEecCCceEEEeecc
Confidence            9998888999999999999999876

>KOG0641|consensus

Probab=99.95  E-value=4e-24  Score=160.94  Aligned_cols=230  Identities=18%  Similarity=0.271  Sum_probs=182.8

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC------CC---------ceeEEecccccceEEEEEecCCCEEEEEeCC
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT------LG---------SVVSTFKSHQSTILAVAVLSDSRRVVTSDKA   89 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~------~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   89 (392)
                      ....|.+++|+|.|.+.++|+...+++|....      .+         -..+.-+.|.+.|.|.+|+|+|+.|++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            56789999999999999999999999987442      11         1123345689999999999999999999999


Q ss_pred             CeEEEEEcCCcee--------eeecccceeEEEEeCC----CCEEEEec-CCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         90 GVIAVWVADNAQL--------LYSALGPSKCLTVTHN----MKYIVSGD-GDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        90 ~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~----~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      .+|++...+....        +.-+.+.+..++|..+    +..|++++ .|-.|++-|...   .+......+|.+.|.
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~---g~~~~a~sghtghil  187 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR---GQGFHALSGHTGHIL  187 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC---CCcceeecCCcccEE
Confidence            9999986554322        2334567888888543    34555544 356666667653   344455568888888


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec--C-----CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG--H-----TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      .+ ++.++-++++|+.|.+|++||++-..++..+..  |     ...|..++.. +.+++|++|-.|....+||++.++.
T Consensus       188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd-psgrll~sg~~dssc~lydirg~r~  265 (350)
T KOG0641|consen  188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD-PSGRLLASGHADSSCMLYDIRGGRM  265 (350)
T ss_pred             EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC-CCcceeeeccCCCceEEEEeeCCce
Confidence            76 667899999999999999999998888877642  2     3568899999 7899999999999999999999999


Q ss_pred             eeeecccccceeEEEEcCCCeEEEEcCCCC
Q psy17243        230 EHFLAGHLGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       230 ~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      ++.+..|...|.++.|+|...+++++..+.
T Consensus       266 iq~f~phsadir~vrfsp~a~yllt~syd~  295 (350)
T KOG0641|consen  266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDM  295 (350)
T ss_pred             eeeeCCCccceeEEEeCCCceEEEEecccc
Confidence            999999999999999999999999987553

>KOG1273|consensus

Probab=99.95  E-value=1.4e-25  Score=176.56  Aligned_cols=290  Identities=14%  Similarity=0.137  Sum_probs=212.7

Q ss_pred             eeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee--c
Q psy17243         29 VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS--A  106 (392)
Q Consensus        29 v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~  106 (392)
                      -.|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|.+++|+++|++|++++.|..|.+||+..+.+++.  +
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            78999999999999999999999999999998899999999999999999999999999999999999999998764  5


Q ss_pred             ccceeEEEEeCCCC-EEEEecCCCcEEEEeCCCCCCCCcceeeec-cccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC
Q psy17243        107 LGPSKCLTVTHNMK-YIVSGDGDNSLRIWPTSPQTHKDDERFTVS-HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG  184 (392)
Q Consensus       107 ~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  184 (392)
                      ..++....|+|... .+++.-.+..-.+.++..........-..+ ......+..|.+.|+++++|...|.+.++|..+.
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~  185 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL  185 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence            67899999999543 344433444445555542111110000000 1111223358888999999999999999999999


Q ss_pred             eEEEEEecCC-CceeEEEEecCCCcEEEEecCCCeEEEEECCCC-------ce--eeeeccc--ccceeEEEEcCCCeEE
Q psy17243        185 KLAQVLVGHT-DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG-------GE--EHFLAGH--LGCVTCVKLAGDGTVA  252 (392)
Q Consensus       185 ~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~~--~~~v~~~~~~~dg~~~  252 (392)
                      +++..++-.. ..|..+.++ ..+.+|+.-+.|+.||.|+++.-       ++  .+.++.-  .-.=.+++|+.||.++
T Consensus       186 e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv  264 (405)
T KOG1273|consen  186 ECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYV  264 (405)
T ss_pred             eeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEE
Confidence            9998887655 788899998 88999999999999999998621       11  1122110  1123478899999999


Q ss_pred             EEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecc------cccceeEEEeeccccceecceeccCC
Q psy17243        253 MSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVD------ERLKRRFSVSASMEEISKIPIKDNVG  326 (392)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~s~d~~~~~~~~~~~~  326 (392)
                      +.+.                  ...-..|.|.+..|.+..++.....+      ..+-+..+++- ..+.+.+|......
T Consensus       265 ~a~s------------------~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  265 CAGS------------------ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE  325 (405)
T ss_pred             Eecc------------------ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence            9875                  11233677888888777766655422      33334455555 67889999765443


Q ss_pred             CC-CCChhhhhhh
Q psy17243        327 SQ-GLGPEQAALA  338 (392)
Q Consensus       327 ~~-~~s~dg~~la  338 (392)
                      .- +|.||-+.|-
T Consensus       326 nwsafAPdFqele  338 (405)
T KOG1273|consen  326 NWSAFAPDFQELE  338 (405)
T ss_pred             chhhcCchHHHHH
Confidence            33 8999988876

>KOG0294|consensus

Probab=99.95  E-value=1.1e-25  Score=177.07  Aligned_cols=226  Identities=15%  Similarity=0.257  Sum_probs=186.5

Q ss_pred             eeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC--EEEEEeCCCeEEEEE
Q psy17243         19 QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR--RVVTSDKAGVIAVWV   96 (392)
Q Consensus        19 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd   96 (392)
                      +..+..|.++|++++.  ++.++|+|+.|-+|+|||+.....+..+..|.+.|+++.|.+.-.  .|++|+.||.|.+|+
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            4566789999999998  578999999999999999999999999999999999999998765  899999999999999


Q ss_pred             cCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC
Q psy17243         97 ADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD  173 (392)
Q Consensus        97 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  173 (392)
                      ...-+++..   +.+.++.++++|.+++-++.+.|+.+++||+-.+........    ....+.+.|+|.|.+++.+..+
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L----~~~at~v~w~~~Gd~F~v~~~~  189 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL----KNKATLVSWSPQGDHFVVSGRN  189 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc----CCcceeeEEcCCCCEEEEEecc
Confidence            988876654   455789999999999999999999999999976554433222    2333448999999999988866


Q ss_pred             CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEE--cCCCeE
Q psy17243        174 MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKL--AGDGTV  251 (392)
Q Consensus       174 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~dg~~  251 (392)
                       .|-+|.+.+......+.. ...+.|+.|.  ++..|++|..|+.|.+||.++..+...+.+|...|-++.+  .|++.+
T Consensus       190 -~i~i~q~d~A~v~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~  265 (362)
T KOG0294|consen  190 -KIDIYQLDNASVFREIEN-PKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEY  265 (362)
T ss_pred             -EEEEEecccHhHhhhhhc-cccceeeeec--CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceE
Confidence             589999988776665542 3556777775  6778899999999999999999999999999999988874  234444


Q ss_pred             EEE
Q psy17243        252 AMS  254 (392)
Q Consensus       252 ~~~  254 (392)
                      +++
T Consensus       266 lvT  268 (362)
T KOG0294|consen  266 LVT  268 (362)
T ss_pred             EEE
Confidence            443

>KOG2096|consensus

Probab=99.95  E-value=1.9e-25  Score=176.16  Aligned_cols=234  Identities=16%  Similarity=0.224  Sum_probs=177.9

Q ss_pred             eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc------------------------------------eeEE
Q psy17243         20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS------------------------------------VVST   63 (392)
Q Consensus        20 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------------------------------------~~~~   63 (392)
                      ..|++|.+.|++++|+.||++|++++.|++|++|++++..                                    .+..
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            4578999999999999999999999999999999986321                                    1111


Q ss_pred             e-----------------------cccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc---ceeEEEEeC
Q psy17243         64 F-----------------------KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG---PSKCLTVTH  117 (392)
Q Consensus        64 ~-----------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~  117 (392)
                      +                       +.|.-.+..+-...++++|++++.|..|.+|+++ |+.+.....   .....+++|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            1                       1133445556666678899999999999999999 877776654   345678999


Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCCC-----CcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC-------e
Q psy17243        118 NMKYIVSGDGDNSLRIWPTSPQTHK-----DDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG-------K  185 (392)
Q Consensus       118 ~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~  185 (392)
                      +|+++++++..-.|++|.+--.+..     .......+|...|..++|+++...+++.+.||.++|||..-.       +
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk  318 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK  318 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence            9999999999999999987422211     122234589999999999999999999999999999998422       2


Q ss_pred             EEEEE----ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec-ccccceeEEEEcCCCeEEEEcC
Q psy17243        186 LAQVL----VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA-GHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       186 ~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .++..    ..-.+....++++ |++..|+.+ ....++++..++++....++ .|...|.+++|+++|+++++..
T Consensus       319 ~Lk~g~~pl~aag~~p~RL~ls-P~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  319 ILKEGSAPLHAAGSEPVRLELS-PSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             HhhcCCcchhhcCCCceEEEeC-CCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence            22222    1112233478899 556666544 46679999999988777664 5889999999999999999975

>KOG0641|consensus

Probab=99.95  E-value=2.5e-24  Score=162.04  Aligned_cols=233  Identities=19%  Similarity=0.262  Sum_probs=185.4

Q ss_pred             ccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce-----eEEecccccceEEEEEecC----CCEEEEEe-CCCeE
Q psy17243         23 EGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV-----VSTFKSHQSTILAVAVLSD----SRRVVTSD-KAGVI   92 (392)
Q Consensus        23 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~d~~i   92 (392)
                      +.|.+.|+|.+|+|+|++|++|+.|.+|++.-++...+     -.++..|.+.|..++|..+    +..|++++ .|..|
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            45899999999999999999999999999987654322     2356679999999999764    34566554 46788


Q ss_pred             EEEEcCCceeeeecccceeEE--EEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeee----ccccceEEEEEEcCCCE
Q psy17243         93 AVWVADNAQLLYSALGPSKCL--TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV----SHSEEITCFTVTWDSQY  166 (392)
Q Consensus        93 ~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~  166 (392)
                      ++-|...++.++.+.++...+  .++-++-++++|+.|.+|++||++-......+....    -..+.|..++..|.|++
T Consensus       166 y~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl  245 (350)
T KOG0641|consen  166 YITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL  245 (350)
T ss_pred             EEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence            888999998877766544322  245578899999999999999998443322221111    12367899999999999


Q ss_pred             EEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC----ceeeeecccccceeE
Q psy17243        167 LITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG----GEEHFLAGHLGCVTC  242 (392)
Q Consensus       167 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~  242 (392)
                      |++|..|....+||++.+++++.+..|...|.|+.|+ +...++++++.|..|++-|+...    -++.....|...+..
T Consensus       246 l~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs-p~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~  324 (350)
T KOG0641|consen  246 LASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS-PGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQ  324 (350)
T ss_pred             eeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC-CCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEE
Confidence            9999999999999999999999999999999999999 78899999999999999998632    233455678889999


Q ss_pred             EEEcCCCeEEEEcC
Q psy17243        243 VKLAGDGTVAMSDL  256 (392)
Q Consensus       243 ~~~~~dg~~~~~~~  256 (392)
                      +.|+|..--+++..
T Consensus       325 ~rwh~~d~sfisss  338 (350)
T KOG0641|consen  325 CRWHPQDFSFISSS  338 (350)
T ss_pred             EEecCccceeeecc
Confidence            99999877777654

>KOG1408|consensus

Probab=99.94  E-value=5e-26  Score=197.38  Aligned_cols=243  Identities=17%  Similarity=0.198  Sum_probs=197.0

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC---CCEEEEEeCCCeEEEEEcCCce
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD---SRRVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~  101 (392)
                      ....+.+++.+|++++||+|..-|+++||++...+....+..|+..|.|+.|+..   .++|++++.|..|.+||....-
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence            3467999999999999999999999999999999999999999999999999853   4689999999999999997653


Q ss_pred             e----eeecccceeEEEEeCCC--CEEEEecCCCcEEEEeCCCCCCCC--cceeeeccccceEEEEEEcCCCEEEEeeCC
Q psy17243        102 L----LYSALGPSKCLTVTHNM--KYIVSGDGDNSLRIWPTSPQTHKD--DERFTVSHSEEITCFTVTWDSQYLITGSRD  173 (392)
Q Consensus       102 ~----~~~~~~~~~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  173 (392)
                      .    +-.+...++++.|..++  ..+++++.|..|.+--........  ...........+..++..|..+++++++.|
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD  617 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD  617 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence            3    33445578889888877  778899999887543222110010  111111234568899999999999999999


Q ss_pred             CcEEEEEcCCCeEEEEEec---CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCe
Q psy17243        174 MSLKVWQVVGGKLAQVLVG---HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT  250 (392)
Q Consensus       174 g~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~  250 (392)
                      ..|+|||+.+++..+.|++   |.+....+... |.+.++++.+.|.++.++|+.+++++..+.+|...|+.+.|.+|-+
T Consensus       618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lD-PSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk  696 (1080)
T KOG1408|consen  618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILD-PSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK  696 (1080)
T ss_pred             cceEEEeccccceeeeecccccCCCceEEEEEC-CCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccch
Confidence            9999999999999999875   55667788888 7789999999999999999999999999999999999999999888


Q ss_pred             EEEEcCCCCCCCCCCCcc
Q psy17243        251 VAMSDLPPSRPAGPKRPL  268 (392)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~  268 (392)
                      .+++...++-+..|..|.
T Consensus       697 HlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  697 HLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hheeecCCceEEEEECch
Confidence            877776665544444443

>KOG0269|consensus

Probab=99.94  E-value=3.7e-26  Score=199.72  Aligned_cols=226  Identities=22%  Similarity=0.372  Sum_probs=191.6

Q ss_pred             CCccCCeEEEEECCC---ccceeeeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEE
Q psy17243          1 MGGMDCLVNVWQMNS---HELQSTMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAV   76 (392)
Q Consensus         1 tg~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~   76 (392)
                      |++.+|.|.+||+..   .+.+..|..|+..+.++.|++ ...+|++||.||+|++||++..+...++.+....|..+.|
T Consensus       105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f  184 (839)
T KOG0269|consen  105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF  184 (839)
T ss_pred             eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceee
Confidence            567899999999987   667778899999999999999 4568999999999999999999999999988899999999


Q ss_pred             ecC-CCEEEEEeCCCeEEEEEcCCcee----eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecc
Q psy17243         77 LSD-SRRVVTSDKAGVIAVWVADNAQL----LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH  151 (392)
Q Consensus        77 ~~~-~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  151 (392)
                      +|. +.+++++...|.+.+||++....    +..+.+++.|+.|+|++.+||+|+.|+.|+|||...........  ...
T Consensus       185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t--InT  262 (839)
T KOG0269|consen  185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT--INT  262 (839)
T ss_pred             ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE--Eee
Confidence            985 57899999999999999998743    45678899999999999999999999999999998654444333  345


Q ss_pred             ccceEEEEEEcCCCE-EEEeeC--CCcEEEEEcCCCe-EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        152 SEEITCFTVTWDSQY-LITGSR--DMSLKVWQVVGGK-LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~-l~~~~~--dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      ..++.++.|-|...+ |++++.  |-.|+|||++..- +...+..|...++.++|...+...+.+++.||.|..-.+++.
T Consensus       263 iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  263 IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            689999999998654 555553  7889999998764 567788899999999998667888999999999877666554


Q ss_pred             c
Q psy17243        228 G  228 (392)
Q Consensus       228 ~  228 (392)
                      .
T Consensus       343 t  343 (839)
T KOG0269|consen  343 T  343 (839)
T ss_pred             c
Confidence            3

>KOG0639|consensus

Probab=99.94  E-value=7e-26  Score=188.88  Aligned_cols=275  Identities=19%  Similarity=0.282  Sum_probs=211.6

Q ss_pred             cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC---ceeEEecc--cccceEEEEEecCCCEEEEEeCCCeEEEEEcC
Q psy17243         24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG---SVVSTFKS--HQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD   98 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   98 (392)
                      .|..-|.++.++...++++||+ .|.|+|||+...   ..+..+..  ..+.|.++...|||+.|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            4888899999999999999997 478999998643   23334432  45679999999999999999999999999998


Q ss_pred             Cceeee--eccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC
Q psy17243         99 NAQLLY--SALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD  173 (392)
Q Consensus        99 ~~~~~~--~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  173 (392)
                      ......  ++..   ....++++||.+..++++.||.|.|||+.   ....++.+.+|...+.||.+++||..|.+|+-|
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh---nq~~VrqfqGhtDGascIdis~dGtklWTGGlD  572 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH---NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD  572 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc---cceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence            765432  2222   33578899999999999999999999998   555566677999999999999999999999999


Q ss_pred             CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEE
Q psy17243        174 MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       174 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~  253 (392)
                      .+|+.||+++++.+.... ....|.++..+ +.+.+++.|-.++.+.|-..... ..+.+.-|+..|.++.|.+.|++++
T Consensus       573 ntvRcWDlregrqlqqhd-F~SQIfSLg~c-P~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfv  649 (705)
T KOG0639|consen  573 NTVRCWDLREGRQLQQHD-FSSQIFSLGYC-PTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFV  649 (705)
T ss_pred             cceeehhhhhhhhhhhhh-hhhhheecccC-CCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceee
Confidence            999999999998776654 56789999999 78889999999999999887644 4456777999999999999999999


Q ss_pred             EcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecc
Q psy17243        254 SDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIP  320 (392)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~  320 (392)
                      +..++.-...+..|....+-.               ......+...+-..+.+|+|+||.|....++
T Consensus       650 StGkDnlLnawrtPyGasiFq---------------skE~SsVlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  650 STGKDNLLNAWRTPYGASIFQ---------------SKESSSVLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             ecCchhhhhhccCccccceee---------------ccccCcceeeeeccCceEEEecCCCcceEEE
Confidence            987665544444443322111               0001112223334556777777777654443

>KOG0646|consensus

Probab=99.94  E-value=8.3e-26  Score=186.69  Aligned_cols=224  Identities=18%  Similarity=0.338  Sum_probs=186.2

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC---------CCceeEEecccccceE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT---------LGSVVSTFKSHQSTIL   72 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~---------~~~~~~~~~~~~~~v~   72 (392)
                      |+..|.|++|.+.+|.++..+.+|-..|+|+.|+.|+.+|++|+.||.|.+|.+.         +-++++.+..|.-+|+
T Consensus        99 g~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsIT  178 (476)
T KOG0646|consen   99 GTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSIT  178 (476)
T ss_pred             ecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeE
Confidence            4478999999999999999999999999999999999999999999999999763         3467888999999999


Q ss_pred             EEEEecC--CCEEEEEeCCCeEEEEEcCCceeeeecc--cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCC-------
Q psy17243         73 AVAVLSD--SRRVVTSDKAGVIAVWVADNAQLLYSAL--GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTH-------  141 (392)
Q Consensus        73 ~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-------  141 (392)
                      ++...+.  ..++++++.|.++++||+..+..+....  ..+.+++++|.+..+++|+.+|.|.+.++.....       
T Consensus       179 Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~  258 (476)
T KOG0646|consen  179 DLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQ  258 (476)
T ss_pred             EEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccc
Confidence            9998765  3589999999999999999999887654  5678999999999999999999999988754321       


Q ss_pred             ------CCcceeeecccc--ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEe
Q psy17243        142 ------KDDERFTVSHSE--EITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       142 ------~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  213 (392)
                            ........+|..  +|+|++++-||.+|++|+.||.+.|||+.+.++++++....++|+.+.+.|-....+..-
T Consensus       259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~  338 (476)
T KOG0646|consen  259 KGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFE  338 (476)
T ss_pred             cccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceeccc
Confidence                  112223345666  999999999999999999999999999999999998886789999999975544444433


Q ss_pred             cCCCeEEEEECC
Q psy17243        214 SKDSNLIVWDME  225 (392)
Q Consensus       214 ~~dg~i~iwd~~  225 (392)
                      +....+-.|++.
T Consensus       339 ~~~ps~~~~~lk  350 (476)
T KOG0646|consen  339 HKQPSLPNPHLK  350 (476)
T ss_pred             ccCccCCchHhh
Confidence            334445555543

>KOG0301|consensus

Probab=99.94  E-value=4.4e-25  Score=190.82  Aligned_cols=243  Identities=19%  Similarity=0.336  Sum_probs=200.4

Q ss_pred             CCccCCeEEEEECCCccce--eeeccCCcCeeE-EEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQ--STMEGHLNTVSC-VAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAV   76 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~-~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~   76 (392)
                      +||.||++++|+-...+.+  ..+.+|.+-|.+ +++.+ ++-.|++|+.|.++.+|......++..+++|+..|.++..
T Consensus        30 s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~  109 (745)
T KOG0301|consen   30 SGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSI  109 (745)
T ss_pred             ecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeec
Confidence            4789999999997655444  347778888877 88886 4446999999999999999999999999999999999998


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCce-eeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         77 LSDSRRVVTSDKAGVIAVWVADNAQ-LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        77 ~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      ..++. +++|+.|.++++|...... .+..+...+..+..-|+. .+++|+.|..|++|.-.     ...+.+.+|..-|
T Consensus       110 ~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-----~~l~tf~gHtD~V  182 (745)
T KOG0301|consen  110 GEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-----TLLKTFSGHTDCV  182 (745)
T ss_pred             CCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-----chhhhhccchhhe
Confidence            87776 9999999999999876543 245566678888888877 89999999999999753     3445566899999


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      +.+++-+++ .|++++.||.|++|++ +++.+..+.+|..-++++... .++..++++++|++++||+..  ++.+.+.-
T Consensus       183 RgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~-~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l  257 (745)
T KOG0301|consen  183 RGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMA-LSDGLIVSTGEDRTLRIWKKD--ECVQVITL  257 (745)
T ss_pred             eeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEec-CCCCeEEEecCCceEEEeecC--ceEEEEec
Confidence            999999765 5888999999999998 789999999999999999976 677889999999999999976  66666664


Q ss_pred             cccceeEEEEcCCCeEEEEc
Q psy17243        236 HLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       236 ~~~~v~~~~~~~dg~~~~~~  255 (392)
                      ..-.|.++.+-++|.+++.+
T Consensus       258 PttsiWsa~~L~NgDIvvg~  277 (745)
T KOG0301|consen  258 PTTSIWSAKVLLNGDIVVGG  277 (745)
T ss_pred             CccceEEEEEeeCCCEEEec
Confidence            45578887776555544443

>KOG2096|consensus

Probab=99.94  E-value=8.4e-26  Score=178.13  Aligned_cols=286  Identities=17%  Similarity=0.216  Sum_probs=200.3

Q ss_pred             EEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee-----ee--ecccceeEEEEeCCCCEEEEec-CCCcEEE
Q psy17243         62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL-----LY--SALGPSKCLTVTHNMKYIVSGD-GDNSLRI  133 (392)
Q Consensus        62 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~--~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~  133 (392)
                      ..+++|.+.|++++|+.||++|++++.|+.|++|+++....     ++  ....+.+.+.|.||.+-+++.. ....+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            45678999999999999999999999999999999986432     11  1123678899999987666554 4568999


Q ss_pred             EeCCCCCCCC---------cceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEec
Q psy17243        134 WPTSPQTHKD---------DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAV  204 (392)
Q Consensus       134 ~d~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  204 (392)
                      |.+...+...         ...+...|.-.+..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.+ 
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS-  237 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS-  237 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC-
Confidence            9775332211         112233466677777777788999999999999999998 88888887776677778888 


Q ss_pred             CCCcEEEEecCCCeEEEEECC---CC-----ceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCcccccccccc
Q psy17243        205 TNKSLVVSGSKDSNLIVWDME---TG-----GEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEV  276 (392)
Q Consensus       205 ~~~~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (392)
                      |+++++++++..--|++|.+-   .|     +.+..+++|...|..++|+++.+.+++.++++....+....+--.    
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~----  313 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA----  313 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec----
Confidence            889999999999999999863   22     245678999999999999999998888776544332221111110    


Q ss_pred             ccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCC---CCChhhhhhhcccChHHHHHHhhCC
Q psy17243        277 SLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQ---GLGPEQAALAQSQHFDQLEALWNKK  353 (392)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~---~~s~dg~~la~s~~~d~~i~~Wd~~  353 (392)
                                 +..+..+....                    .+.....+.+   +++|.|+.||++.+  ..++++..+
T Consensus       314 -----------~qDpk~Lk~g~--------------------~pl~aag~~p~RL~lsP~g~~lA~s~g--s~l~~~~se  360 (420)
T KOG2096|consen  314 -----------GQDPKILKEGS--------------------APLHAAGSEPVRLELSPSGDSLAVSFG--SDLKVFASE  360 (420)
T ss_pred             -----------CCCchHhhcCC--------------------cchhhcCCCceEEEeCCCCcEEEeecC--CceEEEEcc
Confidence                       11111000000                    0111111111   78999999996644  458999998


Q ss_pred             CCCCccccccccccccCccccccccCccCCCCccc
Q psy17243        354 SPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVD  388 (392)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~  388 (392)
                      +++....  ..-.+...+.+++|+|||+++|+..+
T Consensus       361 ~g~~~~~--~e~~h~~~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  361 DGKDYPE--LEDIHSTTISSISYSSDGKYIATCGD  393 (420)
T ss_pred             cCccchh--HHHhhcCceeeEEecCCCcEEeeecc
Confidence            8766222  22224566888999999999996554

>KOG0647|consensus

Probab=99.94  E-value=4e-25  Score=173.03  Aligned_cols=224  Identities=18%  Similarity=0.271  Sum_probs=167.0

Q ss_pred             cCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCC-Ccee-EEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCc
Q psy17243         24 GHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTL-GSVV-STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA  100 (392)
Q Consensus        24 ~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  100 (392)
                      ...+.|.+|+||| ...+++++|.||+|++|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3678899999999 455677999999999999987 3443 344568999999999999999999999999999999999


Q ss_pred             ee--eeecccceeEEEEeCCCC--EEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcE
Q psy17243        101 QL--LYSALGPSKCLTVTHNMK--YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSL  176 (392)
Q Consensus       101 ~~--~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  176 (392)
                      +.  +..+..++.++.|-+...  .|++|+.|.+|++||.+......    ...-...+.++..-  ..+++++..+..|
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~----t~~LPeRvYa~Dv~--~pm~vVata~r~i  178 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA----TLQLPERVYAADVL--YPMAVVATAERHI  178 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee----eeeccceeeehhcc--CceeEEEecCCcE
Confidence            76  456788999999887665  89999999999999998433222    22344556665443  5588889999999


Q ss_pred             EEEEcCCCeEEEEE--ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC--ceeeeeccccc---------ceeEE
Q psy17243        177 KVWQVVGGKLAQVL--VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG--GEEHFLAGHLG---------CVTCV  243 (392)
Q Consensus       177 ~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~---------~v~~~  243 (392)
                      .+|+++++......  ...+-.+.|++.. .+....+.|+-+|.+-|..++.+  +.-..++.|..         .|+++
T Consensus       179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f-~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi  257 (347)
T KOG0647|consen  179 AVYNLENPPTEFKRIESPLKWQTRCVACF-QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI  257 (347)
T ss_pred             EEEEcCCCcchhhhhcCcccceeeEEEEE-ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence            99999876433221  1233457888888 44445588999999999999876  33345555542         35566


Q ss_pred             EEcCCCeEEEE
Q psy17243        244 KLAGDGTVAMS  254 (392)
Q Consensus       244 ~~~~dg~~~~~  254 (392)
                      +|+|.-..+++
T Consensus       258 ~FhP~hgtlvT  268 (347)
T KOG0647|consen  258 AFHPVHGTLVT  268 (347)
T ss_pred             EeecccceEEE
Confidence            66664444444

>KOG0269|consensus

Probab=99.94  E-value=5.1e-26  Score=198.86  Aligned_cols=224  Identities=15%  Similarity=0.254  Sum_probs=183.1

Q ss_pred             eeEEEecC-CCCeEEEEeCCCeEEEEeCCC---CceeEEecccccceEEEEEecC-CCEEEEEeCCCeEEEEEcCCceee
Q psy17243         29 VSCVAISP-NSIFAVSGSEDNTAKVWGLTL---GSVVSTFKSHQSTILAVAVLSD-SRRVVTSDKAGVIAVWVADNAQLL  103 (392)
Q Consensus        29 v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~  103 (392)
                      +..+.|.. +.++||+++..|.|.+||+..   .+.+..|..|+..++++.|++. ..+|++|+.||.|++||++..+..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            45567765 567999999999999999987   5667788899999999999985 468899999999999999988766


Q ss_pred             eeccc---ceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEE
Q psy17243        104 YSALG---PSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVW  179 (392)
Q Consensus       104 ~~~~~---~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  179 (392)
                      ..+.+   .+..+.|+| .+..|+++...|.+++||++...  .......+|.++|.|+.|+|++.+|++|+.|+.|+||
T Consensus       170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~--r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW  247 (839)
T KOG0269|consen  170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD--RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW  247 (839)
T ss_pred             ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch--hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence            55543   677899998 67889999999999999998433  3334455899999999999999999999999999999


Q ss_pred             EcCCCeE--EEEEecCCCceeEEEEecCCCcEEEEec--CCCeEEEEECCCCce-eeeecccccceeEEEEcCCCeEEEE
Q psy17243        180 QVVGGKL--AQVLVGHTDHVSCVAVAVTNKSLVVSGS--KDSNLIVWDMETGGE-EHFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       180 d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                      |+.+.+.  +..+. ...++.+++|-|....+|++++  .|-.|+|||++.+-. ...+..|...++.++|......++|
T Consensus       248 d~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~  326 (839)
T KOG0269|consen  248 DMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLW  326 (839)
T ss_pred             eccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeE
Confidence            9986643  33333 3578999999998888898887  478899999987653 4578889999999999764444444


Q ss_pred             c
Q psy17243        255 D  255 (392)
Q Consensus       255 ~  255 (392)
                      .
T Consensus       327 s  327 (839)
T KOG0269|consen  327 S  327 (839)
T ss_pred             e
Confidence            3

>KOG1063|consensus

Probab=99.94  E-value=4.3e-25  Score=190.82  Aligned_cols=368  Identities=15%  Similarity=0.211  Sum_probs=255.7

Q ss_pred             CCccCCeEEEEECCCcc---------------------ce----------eeeccCCcCeeEEEecCCCCeEEEEeCCCe
Q psy17243          1 MGGMDCLVNVWQMNSHE---------------------LQ----------STMEGHLNTVSCVAISPNSIFAVSGSEDNT   49 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~---------------------~~----------~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~   49 (392)
                      ++++|..||||.+.-+.                     ..          ..+.||.+.|+++.|+|.+..|++++.|.+
T Consensus       211 S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDks  290 (764)
T KOG1063|consen  211 SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKS  290 (764)
T ss_pred             ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcc
Confidence            58999999999873211                     11          123489999999999999989999999999


Q ss_pred             EEEEeCCCC--ce-----eEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee------eeecccceeEEEEe
Q psy17243         50 AKVWGLTLG--SV-----VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL------LYSALGPSKCLTVT  116 (392)
Q Consensus        50 v~iwd~~~~--~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~  116 (392)
                      +.+|..++.  --     +..+.+.........|+|+++.+++-+..|..++|.......      +..+...++.+.|+
T Consensus       291 miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~  370 (764)
T KOG1063|consen  291 MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD  370 (764)
T ss_pred             eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec
Confidence            999987654  22     223333445688999999999999999999999998433211      23344578899999


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCC-CCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC------------
Q psy17243        117 HNMKYIVSGDGDNSLRIWPTSPQ-THKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG------------  183 (392)
Q Consensus       117 ~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------------  183 (392)
                      |.|.+|++.+.|.+-++|-.-.. ..-.++.....|...++|++|-+....+++|.....+++|+...            
T Consensus       371 psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~  450 (764)
T KOG1063|consen  371 PSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGK  450 (764)
T ss_pred             CCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCc
Confidence            99999999999999999865411 11123333446888999999998677889999999999997521            


Q ss_pred             -------------------------------Ce---------------------------------EEEEEecCCCceeE
Q psy17243        184 -------------------------------GK---------------------------------LAQVLVGHTDHVSC  199 (392)
Q Consensus       184 -------------------------------~~---------------------------------~~~~~~~~~~~v~~  199 (392)
                                                     +.                                 .++++.+|...|++
T Consensus       451 ~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~  530 (764)
T KOG1063|consen  451 CFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYA  530 (764)
T ss_pred             cccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEE
Confidence                                           00                                 00123468889999


Q ss_pred             EEEecCCCcEEEEecCCC-----eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCcccccccc
Q psy17243        200 VAVAVTNKSLVVSGSKDS-----NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKK  274 (392)
Q Consensus       200 ~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~  274 (392)
                      ++.+ ++++++++++...     .|++|+..+...++.+++|.-.|+.++|||||+++++...+.........     ..
T Consensus       531 l~~s-~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~-----~~  604 (764)
T KOG1063|consen  531 LAIS-PTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ-----ED  604 (764)
T ss_pred             EEec-CCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee-----cc
Confidence            9999 7899999987543     49999999999889999999999999999999999998765332221110     00


Q ss_pred             ccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccC-----CC---C-------------CCChh
Q psy17243        275 EVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNV-----GS---Q-------------GLGPE  333 (392)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~-----~~---~-------------~~s~d  333 (392)
                      .  ...+.+.....| .  -.+-.....++..|++++|+|+++++|.....     .+   .             .+.++
T Consensus       605 ~--~~e~~fa~~k~H-t--RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e  679 (764)
T KOG1063|consen  605 I--KDEFRFACLKAH-T--RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNE  679 (764)
T ss_pred             c--chhhhhcccccc-c--eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccccc
Confidence            0  000001111111 1  11223444667778999999999999976433     11   0             33345


Q ss_pred             hhhhhcccChHHHHHHhhCCCCCC---------ccccccccccccCccccccccC
Q psy17243        334 QAALAQSQHFDQLEALWNKKSPPR---------SRRFEHSMSKQNSYSSRQHSVD  379 (392)
Q Consensus       334 g~~la~s~~~d~~i~~Wd~~~~~~---------~~~~~~~~~~~~~~~~~~fspd  379 (392)
                      ..++++.|-+.|.|.||......+         +.++...+.+.+.++-+.|+|-
T Consensus       680 ~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~  734 (764)
T KOG1063|consen  680 KGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT  734 (764)
T ss_pred             ccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence            554555788889999998652111         2223344444445666889875

>KOG0639|consensus

Probab=99.94  E-value=3.4e-25  Score=184.84  Aligned_cols=248  Identities=19%  Similarity=0.278  Sum_probs=207.0

Q ss_pred             cCCeEEEEECCCc---cceeeec--cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce--eEEecccccceEEEEE
Q psy17243          4 MDCLVNVWQMNSH---ELQSTME--GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV--VSTFKSHQSTILAVAV   76 (392)
Q Consensus         4 ~dg~i~vwd~~~~---~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~   76 (392)
                      ..|.|+|||+...   ..+..+.  .....|.++...|||+.|++|+.-.++.|||+.....  ..++....-...+++.
T Consensus       438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~  517 (705)
T KOG0639|consen  438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  517 (705)
T ss_pred             CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc
Confidence            4578999999642   2333333  2567899999999999999999999999999976543  3334433456788999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecccc
Q psy17243         77 LSDSRRVVTSDKAGVIAVWVADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        77 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      +||.+..++++.||.|.|||+.+...++.+.+   .+.|+.++++|..|.+|+-|++|+.||+++.......    ...+
T Consensus       518 spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh----dF~S  593 (705)
T KOG0639|consen  518 SPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH----DFSS  593 (705)
T ss_pred             CCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh----hhhh
Confidence            99999999999999999999999999888776   5689999999999999999999999999865544332    3457


Q ss_pred             ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee
Q psy17243        154 EITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                      .|.++.++|++.+|++|-+++.+.+......+ ...+.-|..-|.++.|. ..++++++.+.|+.+..|...-|..+...
T Consensus       594 QIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa-~cGkwfvStGkDnlLnawrtPyGasiFqs  671 (705)
T KOG0639|consen  594 QIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFA-YCGKWFVSTGKDNLLNAWRTPYGASIFQS  671 (705)
T ss_pred             hheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEec-ccCceeeecCchhhhhhccCccccceeec
Confidence            89999999999999999999999998865443 45566689999999999 78999999999999999999888887766


Q ss_pred             cccccceeEEEEcCCCeEEEEcCCC
Q psy17243        234 AGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       234 ~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      + ....|.++.+|.|.++++++..+
T Consensus       672 k-E~SsVlsCDIS~ddkyIVTGSGd  695 (705)
T KOG0639|consen  672 K-ESSSVLSCDISFDDKYIVTGSGD  695 (705)
T ss_pred             c-ccCcceeeeeccCceEEEecCCC
Confidence            5 56789999999999999999754

>KOG0270|consensus

Probab=99.93  E-value=1.3e-24  Score=178.51  Aligned_cols=228  Identities=18%  Similarity=0.265  Sum_probs=183.4

Q ss_pred             CccCCeEEEEECCC----------c-----------cceeeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCc
Q psy17243          2 GGMDCLVNVWQMNS----------H-----------ELQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGS   59 (392)
Q Consensus         2 g~~dg~i~vwd~~~----------~-----------~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~   59 (392)
                      |+.|..|.|||+.=          |           +.-....+|+..|.++.|+.+ ...||+||.|.+|++||+.+++
T Consensus       198 Gtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~  277 (463)
T KOG0270|consen  198 GTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK  277 (463)
T ss_pred             eccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC
Confidence            78899999999831          1           111112469999999999885 4589999999999999999999


Q ss_pred             eeEEecccccceEEEEEecC-CCEEEEEeCCCeEEEEEcCC---ceeeeecccceeEEEEeCC-CCEEEEecCCCcEEEE
Q psy17243         60 VVSTFKSHQSTILAVAVLSD-SRRVVTSDKAGVIAVWVADN---AQLLYSALGPSKCLTVTHN-MKYIVSGDGDNSLRIW  134 (392)
Q Consensus        60 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~  134 (392)
                      +..++..|.+.|.++.|+|. ...|++|+.|+++.+.|.+.   ......+.+.+..++|.|. ...+++++.||.|+-+
T Consensus       278 p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~  357 (463)
T KOG0270|consen  278 PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYF  357 (463)
T ss_pred             cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEee
Confidence            99999999999999999986 46899999999999999984   3445667788999999985 4577888899999999


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCCeE--EEEEecCCCceeEEEEecCCCcEEE
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVGGKL--AQVLVGHTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~  211 (392)
                      |++...  .......+|..+|.++++++. ..++++++.|+.+++|++....+  +..-.-.-+...|.++.|....+++
T Consensus       358 D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la  435 (463)
T KOG0270|consen  358 DIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLA  435 (463)
T ss_pred             ecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEE
Confidence            999543  555566789999999999876 56899999999999999865443  2221112244677888877788899


Q ss_pred             EecCCCeEEEEECCCCceee
Q psy17243        212 SGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       212 ~~~~dg~i~iwd~~~~~~~~  231 (392)
                      .|+..+.++|||+.+...+.
T Consensus       436 ~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  436 FGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             ecCccceEEEeecccChhHH
Confidence            99999999999998776543

>KOG0267|consensus

Probab=99.93  E-value=7.4e-26  Score=196.44  Aligned_cols=213  Identities=20%  Similarity=0.335  Sum_probs=191.6

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.|..+.+|.+.....+..|.+|..+|.++.|++...+|++|+.+|+|++||++.++.++++.+|...+.++.|+|-+
T Consensus        45 ~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~  124 (825)
T KOG0267|consen   45 TGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG  124 (825)
T ss_pred             cCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce
Confidence            57888899999998887888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      .+.+.++.|+.+++||.+...+.+.+.+   .+.++.++|+|++++.++.|..+++||...+   .....+..|...+..
T Consensus       125 ~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~s  201 (825)
T KOG0267|consen  125 EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQS  201 (825)
T ss_pred             EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccc
Confidence            9999999999999999998877776665   4678899999999999999999999999743   333444578899999


Q ss_pred             EEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC
Q psy17243        158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                      +.|+|..-+++.|+.|+++++||+++.+.+.........|.+.+|+ +++..+++|....
T Consensus       202 le~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn-~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  202 LEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFN-PDGKIVLSGEQIS  260 (825)
T ss_pred             cccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeec-CCceeeecCchhh
Confidence            9999999999999999999999999999988888888999999999 7788888776543

>KOG0301|consensus

Probab=99.93  E-value=1.2e-23  Score=182.01  Aligned_cols=237  Identities=25%  Similarity=0.366  Sum_probs=195.2

Q ss_pred             CccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeE--EecccccceEE-EEEec-CCCEEEEEeCCC
Q psy17243         15 SHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS--TFKSHQSTILA-VAVLS-DSRRVVTSDKAG   90 (392)
Q Consensus        15 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~-~~~~~-~~~~l~~~~~d~   90 (392)
                      ..++.+.+.+|+..|..++..+.. .++++|.||++++|+-...+.+.  .+.+|.+.|.. +++.+ ++-.+++|+.|.
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence            346678899999999999887655 78999999999999976665543  46667777777 88875 444699999999


Q ss_pred             eEEEEEcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEE
Q psy17243         91 VIAVWVADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYL  167 (392)
Q Consensus        91 ~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  167 (392)
                      .+.+|.+.+..++..+.+   .+.|+....++. +++|+.|.++++|-...     ......+|...|..+..-|++ .+
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-----l~~~l~gH~asVWAv~~l~e~-~~  154 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-----LVYSLQGHTASVWAVASLPEN-TY  154 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh-----hhcccCCcchheeeeeecCCC-cE
Confidence            999999999988766555   556666666666 99999999999997642     222356899999999999887 89


Q ss_pred             EEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcC
Q psy17243        168 ITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       168 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  247 (392)
                      ++|+.|.+|++|.-  ++.++.+.+|.+-|..+++- + +..|++++.||.|+.|++ +++++.++.+|..-|.+++...
T Consensus       155 vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl-~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~  229 (745)
T KOG0301|consen  155 VTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVL-D-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL  229 (745)
T ss_pred             EeccCcceeeeccC--CchhhhhccchhheeeeEEe-c-CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence            99999999999984  78899999999999999998 3 445788999999999999 7999999999999999999888


Q ss_pred             CCeEEEEcCCCCCCCCC
Q psy17243        248 DGTVAMSDLPPSRPAGP  264 (392)
Q Consensus       248 dg~~~~~~~~~~~~~~~  264 (392)
                      ++..+++..++.....+
T Consensus       230 ~~~~Ivs~gEDrtlriW  246 (745)
T KOG0301|consen  230 SDGLIVSTGEDRTLRIW  246 (745)
T ss_pred             CCCeEEEecCCceEEEe
Confidence            88888888766554433

>KOG1274|consensus

Probab=99.92  E-value=3.9e-23  Score=184.31  Aligned_cols=246  Identities=18%  Similarity=0.210  Sum_probs=199.3

Q ss_pred             CCccCCeEEEEECCCc-cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNSH-ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      |++.||.|++|+..+. +....+..+...|.+++..  +.+|++|+.+++|.+|.+.+++.-..+....-++.+++|+.+
T Consensus        30 tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~  107 (933)
T KOG1274|consen   30 TCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGS  107 (933)
T ss_pred             EecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecC
Confidence            4689999999998766 5555665588888888764  448999999999999999998876666666788999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCc---eeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeee-----cc
Q psy17243         80 SRRVVTSDKAGVIAVWVADNA---QLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV-----SH  151 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~  151 (392)
                      |++++.|+.|-.|++.++...   ..++.+.+++.++.++|++++||+.+.||.|++||+..+.....+....     ..
T Consensus       108 g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~  187 (933)
T KOG1274|consen  108 GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL  187 (933)
T ss_pred             CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc
Confidence            999999999999999988765   4456778899999999999999999999999999998654433222111     12


Q ss_pred             ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec--CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG--HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      ...+..++|+|++..|++.+.|+.|++|+.........+..  +...+..++|+ |+|.+||+++.||.|.|||.++-..
T Consensus       188 s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws-PnG~YiAAs~~~g~I~vWnv~t~~~  266 (933)
T KOG1274|consen  188 SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWS-PNGKYIAASTLDGQILVWNVDTHER  266 (933)
T ss_pred             cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEc-CCCcEEeeeccCCcEEEEecccchh
Confidence            45677899999988888888899999999999888777653  34458999999 6799999999999999999997222


Q ss_pred             eeeecccccceeEEEEcCCCeEEE
Q psy17243        230 EHFLAGHLGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       230 ~~~~~~~~~~v~~~~~~~dg~~~~  253 (392)
                          ......|++++|.|+...+-
T Consensus       267 ----~~~~~~Vc~~aw~p~~n~it  286 (933)
T KOG1274|consen  267 ----HEFKRAVCCEAWKPNANAIT  286 (933)
T ss_pred             ----ccccceeEEEecCCCCCeeE
Confidence                22345899999998765443

>KOG0302|consensus

Probab=99.92  E-value=7e-24  Score=170.90  Aligned_cols=203  Identities=18%  Similarity=0.310  Sum_probs=169.9

Q ss_pred             ccCCcCeeEEEecCCC--CeEEEEeCCCeEEEEeCC----------------CCceeEEecccccceEEEEEecCC-CEE
Q psy17243         23 EGHLNTVSCVAISPNS--IFAVSGSEDNTAKVWGLT----------------LGSVVSTFKSHQSTILAVAVLSDS-RRV   83 (392)
Q Consensus        23 ~~h~~~v~~~~~~~~~--~~l~~~~~dg~v~iwd~~----------------~~~~~~~~~~~~~~v~~~~~~~~~-~~l   83 (392)
                      -.|.+.++.+.-++-+  .+.++=+..|.|+||++.                ..+++.++.+|...=+.++|+|-. ..|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3577888888777744  466677888999999984                235678888999999999999943 258


Q ss_pred             EEEeCCCeEEEEEcCCcee------eeecccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         84 VTSDKAGVIAVWVADNAQL------LYSALGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      ++|..-+.|++|...++.-      ...+...+..++|+|. ...|++|+.||.|+|||++....+..+.. .+|.+.|+
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN  306 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN  306 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence            8888889999999887643      3345567788999995 46889999999999999998766655554 68999999


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCC---CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVG---GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      .+.|+....+|++|+.||+++|||+++   ++++..++-|..+|+++.|+|.+...|++++.|..|.+||+.-
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            999999888999999999999999986   4688899999999999999999999999999999999999864

>KOG1274|consensus

Probab=99.92  E-value=8.1e-23  Score=182.31  Aligned_cols=238  Identities=14%  Similarity=0.197  Sum_probs=196.5

Q ss_pred             ccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC-ceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCce
Q psy17243         23 EGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-SVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        23 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  101 (392)
                      ..|+..-+.++|.|+|.+|++++.||.|++|+.... +....+..+...|.+++..  +.+|++++.+++|.+|.+.+++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            468999999999999999999999999999997766 4444454477778887764  5599999999999999988775


Q ss_pred             ---eeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEE
Q psy17243        102 ---LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV  178 (392)
Q Consensus       102 ---~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  178 (392)
                         .+..+..++++++++.+|++++.|+.|-.|++.+....   .......+|..+|.++.|+|++++|++.+.||.|++
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~---s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS---SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI  164 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc---chheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence               56788889999999999999999999999999998743   334455689999999999999999999999999999


Q ss_pred             EEcCCCeEEEEEec-------C-CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc--cccceeEEEEcCC
Q psy17243        179 WQVVGGKLAQVLVG-------H-TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG--HLGCVTCVKLAGD  248 (392)
Q Consensus       179 ~d~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~d  248 (392)
                      ||+.++.+...+.+       . ...+..++|+|.++.+ +..+.|+.|++|+.........+..  +...+..++|+|.
T Consensus       165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l-a~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn  243 (933)
T KOG1274|consen  165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTL-AVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN  243 (933)
T ss_pred             EEcccchhhhhcccCCccccccccceeeeeeecCCCCeE-EeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence            99999877666543       1 3456788999655555 4556799999999999888876653  4445999999999


Q ss_pred             CeEEEEcCCCCCCCCCCC
Q psy17243        249 GTVAMSDLPPSRPAGPKR  266 (392)
Q Consensus       249 g~~~~~~~~~~~~~~~~~  266 (392)
                      |++++.+..++++..|..
T Consensus       244 G~YiAAs~~~g~I~vWnv  261 (933)
T KOG1274|consen  244 GKYIAASTLDGQILVWNV  261 (933)
T ss_pred             CcEEeeeccCCcEEEEec
Confidence            999999887776655443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=4.4e-22  Score=171.14  Aligned_cols=241  Identities=11%  Similarity=0.078  Sum_probs=179.5

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEE-eCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSG-SEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.|++||+.+++.+..+.. ...+.+++|+|++
T Consensus        49 ~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg  126 (300)
T TIGR03866        49 ASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG  126 (300)
T ss_pred             ECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC
Confidence            45689999999999988877765544 5688999999877654 5689999999999888777763 3456889999999


Q ss_pred             CEEEEEeCCC-eEEEEEcCCceeeeec--ccceeEEEEeCCCCEEEEec-CCCcEEEEeCCCCCCCCcceeeec----cc
Q psy17243         81 RRVVTSDKAG-VIAVWVADNAQLLYSA--LGPSKCLTVTHNMKYIVSGD-GDNSLRIWPTSPQTHKDDERFTVS----HS  152 (392)
Q Consensus        81 ~~l~~~~~d~-~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~----~~  152 (392)
                      +.++++..++ .+..||..+++.....  .....++.++++++++++++ .++.|++||+.+.+..........    ..
T Consensus       127 ~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~  206 (300)
T TIGR03866       127 KIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEA  206 (300)
T ss_pred             CEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccccc
Confidence            9999988775 5677899887765432  23456789999999886554 589999999986543222211100    11


Q ss_pred             cceEEEEEEcCCCEEEEe-eCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEe-cCCCeEEEEECCCCcee
Q psy17243        153 EEITCFTVTWDSQYLITG-SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSG-SKDSNLIVWDMETGGEE  230 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~  230 (392)
                      .....++|+|++++++++ ..++.+.+||+++++.+..+. +...+.+++|+ +++.+|+++ ..++.|++||+++++++
T Consensus       207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~g~~l~~~~~~~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT-PDEKYLLTTNGVSNDVSVIDVAALKVI  284 (300)
T ss_pred             CCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC-CCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            123568899999986554 456789999999888776554 45578899999 566666654 56999999999999999


Q ss_pred             eeecccccceeEEEEcC
Q psy17243        231 HFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~~  247 (392)
                      ..++.. ...+.++++|
T Consensus       285 ~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       285 KSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEEEcc-cccceeEeCC
Confidence            888754 4558888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273|consensus

Probab=99.92  E-value=2.6e-23  Score=163.89  Aligned_cols=250  Identities=15%  Similarity=0.235  Sum_probs=189.2

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|.|||+.+....+.+.+|..+|++++||++|+.|+|+|.|..|++||+..|.+++++. ..++|....|+|..
T Consensus        40 vGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k  118 (405)
T KOG1273|consen   40 VGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRK  118 (405)
T ss_pred             eeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeecccc
Confidence            48899999999999999999999999999999999999999999999999999999999999998 78999999999965


Q ss_pred             CE-EEEEeCCCeEEEEEcCCce--eeee-----cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc
Q psy17243         81 RR-VVTSDKAGVIAVWVADNAQ--LLYS-----ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS  152 (392)
Q Consensus        81 ~~-l~~~~~d~~i~iwd~~~~~--~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  152 (392)
                      .. .++.-.+..-.+-++..+.  .+..     ......+..|.+.|+++++|...|.+.+||..+.+.....+.  ...
T Consensus       119 ~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri--ts~  196 (405)
T KOG1273|consen  119 RNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI--TSV  196 (405)
T ss_pred             CCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee--chh
Confidence            43 3333333334444444322  2211     111223556889999999999999999999986544333333  224


Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC-------e--EEEEEec--CCCceeEEEEecCCCcEEEEecC-CCeEE
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGG-------K--LAQVLVG--HTDHVSCVAVAVTNKSLVVSGSK-DSNLI  220 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~--~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~-dg~i~  220 (392)
                      ..|..+.++..|+.|+..+.|..|+.|+++.-       +  +.+++..  .+..=.+++|+ .++.++++++. -..++
T Consensus       197 ~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs-~dgeYv~a~s~~aHaLY  275 (405)
T KOG1273|consen  197 QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS-GDGEYVCAGSARAHALY  275 (405)
T ss_pred             eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec-CCccEEEeccccceeEE
Confidence            78889999999999999999999999998631       1  1111110  12233567888 67888777764 46799


Q ss_pred             EEECCCCceeeeecccc-cceeEEEEcCCCeEEEE
Q psy17243        221 VWDMETGGEEHFLAGHL-GCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       221 iwd~~~~~~~~~~~~~~-~~v~~~~~~~dg~~~~~  254 (392)
                      ||.-..|.+++.+.+.. .....+.|+|-...+++
T Consensus       276 IWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~s  310 (405)
T KOG1273|consen  276 IWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIAS  310 (405)
T ss_pred             EEecCCcceeeeecCCchhheeecccccceeeeee
Confidence            99999999999998877 46677788875555554

>KOG4283|consensus

Probab=99.92  E-value=8.8e-23  Score=159.55  Aligned_cols=258  Identities=16%  Similarity=0.240  Sum_probs=196.2

Q ss_pred             CCccCCeEEEEECCCcc----------cee-----eeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEe
Q psy17243          1 MGGMDCLVNVWQMNSHE----------LQS-----TMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTF   64 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~----------~~~-----~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~   64 (392)
                      +|+.||.|.|||+++-.          .+.     .-.+|+-.|..+.|-| |...+.+++.|.++++||.++.+..-.|
T Consensus        61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F  140 (397)
T KOG4283|consen   61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF  140 (397)
T ss_pred             ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe
Confidence            68999999999997532          011     1135888999999999 6668899999999999999999988888


Q ss_pred             cccccceEEEEEecC---CCEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCE-EEEecCCCcEEEEeCC
Q psy17243         65 KSHQSTILAVAVLSD---SRRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKY-IVSGDGDNSLRIWPTS  137 (392)
Q Consensus        65 ~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~-l~~~~~d~~i~~~d~~  137 (392)
                      + .++.|.+-+++|-   ..++++|..+-.|++-|+.+|..-+.+   ...+.++.|+|...+ |++|+.||.|++||++
T Consensus       141 ~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiR  219 (397)
T KOG4283|consen  141 K-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIR  219 (397)
T ss_pred             e-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEee
Confidence            7 6788888888874   346788888999999999999776554   457889999997765 6788999999999997


Q ss_pred             CC------------CCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe---cCCCc---eeE
Q psy17243        138 PQ------------THKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV---GHTDH---VSC  199 (392)
Q Consensus       138 ~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~---v~~  199 (392)
                      ..            ...+..+...+|.+.+..++|+.++.++++.+.|..+++|+..+|+....-.   .|...   -..
T Consensus       220 rasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~  299 (397)
T KOG4283|consen  220 RASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH  299 (397)
T ss_pred             cccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE
Confidence            43            1222233345788999999999999999999999999999998875322111   11111   111


Q ss_pred             EEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCC
Q psy17243        200 VAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRP  261 (392)
Q Consensus       200 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~  261 (392)
                      +. + .+...++---.++.+.++++-++..+..+..|...|.+.++-|+-+-..++..+..+
T Consensus       300 ~~-~-~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni  359 (397)
T KOG4283|consen  300 IQ-S-MDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNI  359 (397)
T ss_pred             Ee-e-cccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcc
Confidence            22 2 233344444556999999999999999999998899999999876666665544433

>KOG2055|consensus

Probab=99.92  E-value=2.6e-23  Score=171.85  Aligned_cols=258  Identities=15%  Similarity=0.205  Sum_probs=208.1

Q ss_pred             CCccCCeEEEEECC--CccceeeeccCCcCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCCceeE--Eecccc-cceEEE
Q psy17243          1 MGGMDCLVNVWQMN--SHELQSTMEGHLNTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLGSVVS--TFKSHQ-STILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~-~~v~~~   74 (392)
                      ||+.||.+++|.+.  ....++.+.--..+|.+.+|.|+|. .+++++....++.||+++.+..+  ...+++ ..+...
T Consensus       230 vaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~F  309 (514)
T KOG2055|consen  230 VAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERF  309 (514)
T ss_pred             EecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhhee
Confidence            58999999999885  3456666666788999999999998 89999999999999999886543  333443 356778


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCceeeee--cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc
Q psy17243         75 AVLSDSRRVVTSDKAGVIAVWVADNAQLLYS--ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS  152 (392)
Q Consensus        75 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  152 (392)
                      ..++++++|+..+..|.|.+....+++.+..  +.+.+..++|+.+++.|++++.+|.|.+||++...  ...+......
T Consensus       310 eVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~  387 (514)
T KOG2055|consen  310 EVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS--CLHRFVDDGS  387 (514)
T ss_pred             EecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc--eEEEEeecCc
Confidence            8899999999999999999999999998765  45688999999999999999999999999998542  2222222223


Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEcC------CCeEEEEEecCCCceeEEEEecCCCcEEEEecC--CCeEEEEEC
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQVV------GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK--DSNLIVWDM  224 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~  224 (392)
                      -.-++++.++++.+|++|+..|.|.|||..      +.+++..+..-...|+.++|+ ++.++|+.+|.  +..+++-.+
T Consensus       388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn-~d~qiLAiaS~~~knalrLVHv  466 (514)
T KOG2055|consen  388 VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN-HDAQILAIASRVKKNALRLVHV  466 (514)
T ss_pred             cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC-cchhhhhhhhhccccceEEEec
Confidence            344677888999999999999999999964      346777777778899999999 77888877764  678999999


Q ss_pred             CCCceeeeecccc---cceeEEEEcCCCeEEEEcCCCCCC
Q psy17243        225 ETGGEEHFLAGHL---GCVTCVKLAGDGTVAMSDLPPSRP  261 (392)
Q Consensus       225 ~~~~~~~~~~~~~---~~v~~~~~~~dg~~~~~~~~~~~~  261 (392)
                      .+......++...   +.|+||+|+|.|-+++.+-+.++.
T Consensus       467 PS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv  506 (514)
T KOG2055|consen  467 PSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV  506 (514)
T ss_pred             cceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence            8877766665443   468999999999999998766554

>KOG2445|consensus

Probab=99.92  E-value=2.4e-22  Score=157.93  Aligned_cols=249  Identities=18%  Similarity=0.197  Sum_probs=191.4

Q ss_pred             ccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC----ceeEEecccccceEEEEEecC--CCEEEEEeCCCeEEEEE
Q psy17243         23 EGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG----SVVSTFKSHQSTILAVAVLSD--SRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        23 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd   96 (392)
                      .+|.+-|.++.|.+.|+.+|+|+.|++|+|||.++.    .+....+.|.+.|..+.|.+-  |+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            468899999999999999999999999999996543    456778899999999999653  78999999999999996


Q ss_pred             cCCce------------eeeecccceeEEEEeC--CCCEEEEecCCCcEEEEeCCCCCCCCcce----------eeeccc
Q psy17243         97 ADNAQ------------LLYSALGPSKCLTVTH--NMKYIVSGDGDNSLRIWPTSPQTHKDDER----------FTVSHS  152 (392)
Q Consensus        97 ~~~~~------------~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----------~~~~~~  152 (392)
                      -....            .+......+..+.|.|  -|-.+++++.||.++||+...........          ....+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            53211            1222335678888888  56789999999999999875432211111          112355


Q ss_pred             cceEEEEEEcC---CCEEEEeeCC-----CcEEEEEcCCC----eEEEEEecCCCceeEEEEecCCC---cEEEEecCCC
Q psy17243        153 EEITCFTVTWD---SQYLITGSRD-----MSLKVWQVVGG----KLAQVLVGHTDHVSCVAVAVTNK---SLVVSGSKDS  217 (392)
Q Consensus       153 ~~v~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg  217 (392)
                      .+..|+.|+|.   ..+|++|+.+     +.++||.....    ..+..+.+|..+|+.++|.|.-+   .+|++++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            67788999875   4578888765     47888876543    34566789999999999997544   5789999999


Q ss_pred             eEEEEECCCC--------------------ceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCcccccc
Q psy17243        218 NLIVWDMETG--------------------GEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLL  272 (392)
Q Consensus       218 ~i~iwd~~~~--------------------~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  272 (392)
                       |+||.+...                    +.+..+.+|++.|..+.|+-.|.++++..+++....++....++.
T Consensus       250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~  323 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLW  323 (361)
T ss_pred             -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhh
Confidence             999998731                    234457789999999999999999999998887777666555553

>KOG2445|consensus

Probab=99.92  E-value=2.3e-22  Score=158.08  Aligned_cols=223  Identities=15%  Similarity=0.217  Sum_probs=172.9

Q ss_pred             CCccCCeEEEEECC----CccceeeeccCCcCeeEEEecC--CCCeEEEEeCCCeEEEEeCCCC---------ceeEEec
Q psy17243          1 MGGMDCLVNVWQMN----SHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVWGLTLG---------SVVSTFK   65 (392)
Q Consensus         1 tg~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~---------~~~~~~~   65 (392)
                      |++.|++|+|||..    +..+....+.|.+.|..+.|.+  -|+.+|+++.|+++.||.-...         ....++.
T Consensus        30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~  109 (361)
T KOG2445|consen   30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV  109 (361)
T ss_pred             eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEee
Confidence            68899999999964    3455666788999999999976  4889999999999999974211         2345566


Q ss_pred             ccccceEEEEEecC--CCEEEEEeCCCeEEEEEcCCcee------eee----------cccceeEEEEeC---CCCEEEE
Q psy17243         66 SHQSTILAVAVLSD--SRRVVTSDKAGVIAVWVADNAQL------LYS----------ALGPSKCLTVTH---NMKYIVS  124 (392)
Q Consensus        66 ~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~------~~~----------~~~~~~~~~~~~---~~~~l~~  124 (392)
                      ...+.|+.+.|.|.  |-.|++++.||.++||+....--      ..+          ...+..|+.|+|   ...+|++
T Consensus       110 DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv  189 (361)
T KOG2445|consen  110 DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV  189 (361)
T ss_pred             cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE
Confidence            67789999999986  66899999999999997654321      111          223556888887   3467888


Q ss_pred             ecCC-----CcEEEEeCCCCC-CCCcceeeeccccceEEEEEEcC----CCEEEEeeCCCcEEEEEcCCC----------
Q psy17243        125 GDGD-----NSLRIWPTSPQT-HKDDERFTVSHSEEITCFTVTWD----SQYLITGSRDMSLKVWQVVGG----------  184 (392)
Q Consensus       125 ~~~d-----~~i~~~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~----------  184 (392)
                      |+.+     +.++||...... ..........|..+|+.++|.|+    -.+|++++.|| |+||.++..          
T Consensus       190 gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~  268 (361)
T KOG2445|consen  190 GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVL  268 (361)
T ss_pred             EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhccc
Confidence            8776     588899876544 22333334489999999999997    24799999999 999998731          


Q ss_pred             ----------eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        185 ----------KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       185 ----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                                +.+..+..|++.|..+.|+ -.+.+|.+.+.||.||+|...
T Consensus       269 ~~~~~~~l~v~~vs~~~~H~~~VWrv~wN-mtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  269 APDLMTDLPVEKVSELDDHNGEVWRVRWN-MTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             CCCCccccceEEeeeccCCCCceEEEEEe-eeeeEEeecCCCceeeehhhh
Confidence                      2445577899999999999 789999999999999999754

>KOG0650|consensus

Probab=99.91  E-value=6.2e-23  Score=174.85  Aligned_cols=235  Identities=17%  Similarity=0.218  Sum_probs=184.8

Q ss_pred             eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC--EEEEEeCCCeEEEEEc
Q psy17243         20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR--RVVTSDKAGVIAVWVA   97 (392)
Q Consensus        20 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~   97 (392)
                      ..+.+|++.|.++...|.|.+|++|+.||+|+||.+.+|+++.++. ..+.|.+++|+|.+.  .|+++- ...+.+.+.
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp  471 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIVNP  471 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEeCc
Confidence            4578999999999999999999999999999999999999999998 577999999999865  333333 333444432


Q ss_pred             CCc----------------------------------------eeeeecccceeEEEEeCCCCEEEEecCC---CcEEEE
Q psy17243         98 DNA----------------------------------------QLLYSALGPSKCLTVTHNMKYIVSGDGD---NSLRIW  134 (392)
Q Consensus        98 ~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~~~  134 (392)
                      .-|                                        .....+..++..+.|+..|.||++...+   ..|.|+
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence            211                                        0122334467789999999999998664   578899


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEec
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      ++.....+..   +....+.|.++.|+|...+|++++. ..|+|||+.....++.+......|..++.+ ++|.-|+.|+
T Consensus       552 QLSK~~sQ~P---F~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msih-p~GDnli~gs  626 (733)
T KOG0650|consen  552 QLSKRKSQSP---FRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIH-PNGDNLILGS  626 (733)
T ss_pred             ecccccccCc---hhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeec-CCCCeEEEec
Confidence            8874433322   2245678899999999989988875 479999999888888877777889999999 5666677899


Q ss_pred             CCCeEEEEECCCC-ceeeeecccccceeEEEEcCCCeEEEEcCCCCCC
Q psy17243        215 KDSNLIVWDMETG-GEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRP  261 (392)
Q Consensus       215 ~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~  261 (392)
                      .|+.+..+|+.-. ++.+.+..|...+++++|++--.+++++.+++..
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv  674 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTV  674 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcE
Confidence            9999999999854 5667888899999999999988888888776443

>KOG4283|consensus

Probab=99.91  E-value=6.9e-23  Score=160.14  Aligned_cols=283  Identities=15%  Similarity=0.200  Sum_probs=185.7

Q ss_pred             ccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeE---------------EecccccceEEEEEecCCCEEEEE
Q psy17243         23 EGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVS---------------TFKSHQSTILAVAVLSDSRRVVTS   86 (392)
Q Consensus        23 ~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~---------------~~~~~~~~v~~~~~~~~~~~l~~~   86 (392)
                      ..|.+.|+++...+ .|+|+++|+.||.|.+||++......               .-.+|+-.|.++.|-|-       
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-------  112 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-------  112 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-------
Confidence            45999999999998 78999999999999999997543110               00124444555555542       


Q ss_pred             eCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC---
Q psy17243         87 DKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD---  163 (392)
Q Consensus        87 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---  163 (392)
                                                     |...+.+++.|.++++||..+.+..    .....++.|.+-+++|-   
T Consensus       113 -------------------------------DtGmFtssSFDhtlKVWDtnTlQ~a----~~F~me~~VYshamSp~a~s  157 (397)
T KOG4283|consen  113 -------------------------------DTGMFTSSSFDHTLKVWDTNTLQEA----VDFKMEGKVYSHAMSPMAMS  157 (397)
T ss_pred             -------------------------------cCceeecccccceEEEeecccceee----EEeecCceeehhhcChhhhc
Confidence                                           2334444455555555555422111    11123345555556653   


Q ss_pred             CCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC-ceee-----------
Q psy17243        164 SQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG-GEEH-----------  231 (392)
Q Consensus       164 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~-----------  231 (392)
                      --++++|..+-.|++.|+.+|...+.+.+|.+.|.++.|+|..+-.|++|+.||.|++||++.- .+..           
T Consensus       158 HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p  237 (397)
T KOG4283|consen  158 HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP  237 (397)
T ss_pred             ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc
Confidence            3378888889999999999999999999999999999999999999999999999999999753 1211           


Q ss_pred             ---eecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccc------cceeEEEeccCCcceeEEEeecccc
Q psy17243        232 ---FLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVS------LDTYTWQRKYGHLTSSIMMAAVDER  302 (392)
Q Consensus       232 ---~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  302 (392)
                         .-..|.+.|+.++|+.||.++++...+.+...+.....+-...+..      -..+..+...++......+ ...  
T Consensus       238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~-p~~--  314 (397)
T KOG4283|consen  238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLF-PND--  314 (397)
T ss_pred             cccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEE-ecC--
Confidence               2346778999999999999988876665544332221111111000      0011111122222211111 111  


Q ss_pred             cceeEEEeeccccceecceeccC--CCCCCChhhhhhhcccChHHHHHHhhC
Q psy17243        303 LKRRFSVSASMEEISKIPIKDNV--GSQGLGPEQAALAQSQHFDQLEALWNK  352 (392)
Q Consensus       303 ~~~~~~~s~s~d~~~~~~~~~~~--~~~~~s~dg~~la~s~~~d~~i~~Wd~  352 (392)
                       ++.++++......++.|.....  ...++.|+-+.+. ++..|+.|..|-.
T Consensus       315 -~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~-tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  315 -GSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCF-TGDMNGNIYMWSP  364 (397)
T ss_pred             -CeEEEEEccCceEEEeeecccceeeEEeecCchhhhh-ccccCCccccccc
Confidence             4557777777778888876522  2228889999888 9999999999976

>KOG1963|consensus

Probab=99.91  E-value=9.3e-22  Score=175.06  Aligned_cols=344  Identities=18%  Similarity=0.240  Sum_probs=241.2

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCC---CeEEEEeCCCeEEEEeCCCCceeEEe---------------
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNS---IFAVSGSEDNTAKVWGLTLGSVVSTF---------------   64 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~---------------   64 (392)
                      ..+..|.||...+++++..+.+|..++..+.+.|..   .++++++.||.|++||...+.+++++               
T Consensus        34 ~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~  113 (792)
T KOG1963|consen   34 CTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQ  113 (792)
T ss_pred             eeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhH
Confidence            346789999999999999999999999999998854   47789999999999998755443332               


Q ss_pred             --------------------------------------------------------------------------------
Q psy17243         65 --------------------------------------------------------------------------------   64 (392)
Q Consensus        65 --------------------------------------------------------------------------------   64 (392)
                                                                                                      
T Consensus       114 a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~  193 (792)
T KOG1963|consen  114 ADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTK  193 (792)
T ss_pred             hCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccce
Confidence                                                                                            


Q ss_pred             --------cccccceEEEEEecCCCEEEEEeCCCeEEEEEc-C------CceeeeecccceeEEEEeCCCCEEEEecCCC
Q psy17243         65 --------KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA-D------NAQLLYSALGPSKCLTVTHNMKYIVSGDGDN  129 (392)
Q Consensus        65 --------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  129 (392)
                              ..|.-.+++.+++|++++++++..||.|.+|.- .      +...++-+..++.++.|+++|.+|++|+.++
T Consensus       194 ~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~  273 (792)
T KOG1963|consen  194 HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG  273 (792)
T ss_pred             eeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce
Confidence                    124445788999999999999999999999943 2      3356777888999999999999999999999


Q ss_pred             cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec-----------CCCcee
Q psy17243        130 SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG-----------HTDHVS  198 (392)
Q Consensus       130 ~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~v~  198 (392)
                      .+.+|.+.++..    .+...-.++|..+.++||+.+.+....|..|.+....+......+.+           ..+-.+
T Consensus       274 VLv~Wq~~T~~k----qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t  349 (792)
T KOG1963|consen  274 VLVLWQLETGKK----QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT  349 (792)
T ss_pred             EEEEEeecCCCc----ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence            999999986552    23334578999999999999999999999999998866554433332           123456


Q ss_pred             EEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec-----------ccccceeEEEEcCCCeEEEEcCCCCCCCCCC--
Q psy17243        199 CVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA-----------GHLGCVTCVKLAGDGTVAMSDLPPSRPAGPK--  265 (392)
Q Consensus       199 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~--  265 (392)
                      .++++| ..+.++-.+..|.|.+||+-+.+.+..+.           .+.-.++.++.+-.|.++++.--........  
T Consensus       350 ~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~  428 (792)
T KOG1963|consen  350 GVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG  428 (792)
T ss_pred             eEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence            788885 44555666789999999999887665543           1223577888888899998853110000000  


Q ss_pred             CccccccccccccceeEEEec--cCCcceeEEEeecccccceeEEEeeccccceecceec---------------cCC--
Q psy17243        266 RPLRRLLKKEVSLDTYTWQRK--YGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKD---------------NVG--  326 (392)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~---------------~~~--  326 (392)
                      ....++.........+.....  .+|............ ......++++.|+.+++|...               ..+  
T Consensus       429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~-~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy  507 (792)
T KOG1963|consen  429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNP-TRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY  507 (792)
T ss_pred             eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecC-cccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence            001111111111112221111  233333222222211 112267899999999999761               111  


Q ss_pred             ------CCCCChhhhhhhcccChHHHHHHhhCCC
Q psy17243        327 ------SQGLGPEQAALAQSQHFDQLEALWNKKS  354 (392)
Q Consensus       327 ------~~~~s~dg~~la~s~~~d~~i~~Wd~~~  354 (392)
                            ...||.||..||  .+.|+.|.+||..+
T Consensus       508 ~k~~i~a~~fs~dGslla--~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  508 HKTPITALCFSQDGSLLA--VSFDDTITIWDYDT  539 (792)
T ss_pred             ccCcccchhhcCCCcEEE--EecCCEEEEecCCC
Confidence                  229999998877  56788999999987

>KOG4378|consensus

Probab=99.91  E-value=1.3e-22  Score=169.31  Aligned_cols=243  Identities=16%  Similarity=0.239  Sum_probs=194.5

Q ss_pred             ccCCeEEEEECCC--ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          3 GMDCLVNVWQMNS--HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         3 ~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +.|..|++|.-..  ++....-+.-...-.|++......|+++|+..+.|+|||++...+.+.++.|...|+++.+....
T Consensus        54 ~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D  133 (673)
T KOG4378|consen   54 AGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD  133 (673)
T ss_pred             CCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc
Confidence            4577888886432  22222222222344566665666899999999999999999888888999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeeccc----ceeEEEEeCCCCE-EEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMKY-IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      .+|++++..|.|.+..+.++.....+..    .+.-+.+++..+. |.+++.+|.|.+||+....  ........|..+.
T Consensus       134 eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s--p~~~~~~~HsAP~  211 (673)
T KOG4378|consen  134 EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS--PIFHASEAHSAPC  211 (673)
T ss_pred             ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC--cccchhhhccCCc
Confidence            9999999999999999998876544432    3557889987664 5678889999999997432  3344556799999


Q ss_pred             EEEEEEcC-CCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC-Cceeeee
Q psy17243        156 TCFTVTWD-SQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET-GGEEHFL  233 (392)
Q Consensus       156 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~  233 (392)
                      ..++|+|. ..+|++.+.|..|.+||.+..+....+. ...+...++|. +++.+|++|...|.|..||++. ..++..+
T Consensus       212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~-~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~  289 (673)
T KOG4378|consen  212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFS-ECGTYLCAGNSKGELIAYDMRSTKAPVAVR  289 (673)
T ss_pred             CcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeec-CCceEEEeecCCceEEEEecccCCCCceEe
Confidence            99999996 4578888999999999999877766665 46788999999 8999999999999999999986 4577888


Q ss_pred             cccccceeEEEEcCCC
Q psy17243        234 AGHLGCVTCVKLAGDG  249 (392)
Q Consensus       234 ~~~~~~v~~~~~~~dg  249 (392)
                      ..|...|++++|-+.-
T Consensus       290 sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  290 SAHDASVTRVAFQPSP  305 (673)
T ss_pred             eecccceeEEEeeecc
Confidence            9999999999998764

>KOG4328|consensus

Probab=99.91  E-value=7.5e-23  Score=168.96  Aligned_cols=243  Identities=12%  Similarity=0.151  Sum_probs=184.1

Q ss_pred             EECCCccceeeeccCCcCeeEEEecCCC--CeEEEEeCCCeEEEEeCCCC----ceeEEecccccceEEEEEecCC-CEE
Q psy17243         11 WQMNSHELQSTMEGHLNTVSCVAISPNS--IFAVSGSEDNTAKVWGLTLG----SVVSTFKSHQSTILAVAVLSDS-RRV   83 (392)
Q Consensus        11 wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l   83 (392)
                      +|+.+......++-+..+|++++|+|..  +++|+|..-|.|-+||+.+.    .-+..+..|..+|.++.|+|.. ..+
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence            3444455556677789999999999943  58899999999999999532    2355677899999999999965 589


Q ss_pred             EEEeCCCeEEEEEcCCcee--eeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEE
Q psy17243         84 VTSDKAGVIAVWVADNAQL--LYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF  158 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~~~~~--~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~  158 (392)
                      ++.+.||+|++-|+++...  +...   ......+.++.+...++.+..=|...+||.+.......  ...-|...|+++
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~--~~~lh~kKI~sv  328 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE--NLRLHKKKITSV  328 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch--hhhhhhccccee
Confidence            9999999999999998744  2222   22345667777788888888878999999986544322  223567799999


Q ss_pred             EEEcC-CCEEEEeeCCCcEEEEEcCCCeE----EEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECC----CCce
Q psy17243        159 TVTWD-SQYLITGSRDMSLKVWQVVGGKL----AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME----TGGE  229 (392)
Q Consensus       159 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~  229 (392)
                      +++|. ..+|++++.|++.+|||++....    +-....|...|.+..|+|.++. |++.+.|..|+|||..    ...+
T Consensus       329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p  407 (498)
T KOG4328|consen  329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEP  407 (498)
T ss_pred             ecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCc
Confidence            99996 45789999999999999986432    2334569999999999987777 8888999999999983    3333


Q ss_pred             eeeeccccc------ceeEEEEcCCCeEEEEcCC
Q psy17243        230 EHFLAGHLG------CVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       230 ~~~~~~~~~------~v~~~~~~~dg~~~~~~~~  257 (392)
                      ...+. |+.      ......|.||..+++.+-.
T Consensus       408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~  440 (498)
T KOG4328|consen  408 LGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRY  440 (498)
T ss_pred             cceee-ccCcccccccchhheeCCCccEEEEecc
Confidence            33333 332      3446789999999988743

>KOG0321|consensus

Probab=99.91  E-value=1.1e-22  Score=174.51  Aligned_cols=227  Identities=19%  Similarity=0.319  Sum_probs=173.8

Q ss_pred             CCccCCeEEEEECCCccceee--eccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCc------------------
Q psy17243          1 MGGMDCLVNVWQMNSHELQST--MEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGS------------------   59 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~------------------   59 (392)
                      +++.|.++++||++..++...  +.+|...|.+++|.| +...|++|+.||.|.|||+.-..                  
T Consensus       117 sasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~  196 (720)
T KOG0321|consen  117 SASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA  196 (720)
T ss_pred             EccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence            357789999999999988877  889999999999999 45688999999999999985221                  


Q ss_pred             ---------eeEEecccccceEE---EEEecCCCEEEEEeC-CCeEEEEEcCCceeeeecc--------------cceeE
Q psy17243         60 ---------VVSTFKSHQSTILA---VAVLSDSRRVVTSDK-AGVIAVWVADNAQLLYSAL--------------GPSKC  112 (392)
Q Consensus        60 ---------~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~--------------~~~~~  112 (392)
                               .+..-+.+...|.+   +.+..|...|++++. |+.|++||+++........              ..+.+
T Consensus       197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n  276 (720)
T KOG0321|consen  197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN  276 (720)
T ss_pred             CCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence                     11112234445555   555568888998888 9999999999875543221              13457


Q ss_pred             EEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecccc-ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe-EEEEE
Q psy17243        113 LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE-EITCFTVTWDSQYLITGSRDMSLKVWQVVGGK-LAQVL  190 (392)
Q Consensus       113 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~  190 (392)
                      +.....|.+|++.+.|+.|++|++..........+...... .-..-..+|++.++++|+.|...++|.+.+.+ ....+
T Consensus       277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l  356 (720)
T KOG0321|consen  277 LILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL  356 (720)
T ss_pred             EEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence            77788889999999999999999986544433322211111 11223478999999999999999999998765 45667


Q ss_pred             ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        191 VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       191 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      .+|...|++++|.|..-.-+++++.|..++||++..+
T Consensus       357 ~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  357 LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            8999999999999887777888899999999999765

>KOG0302|consensus

Probab=99.90  E-value=3e-22  Score=161.53  Aligned_cols=216  Identities=18%  Similarity=0.216  Sum_probs=174.5

Q ss_pred             ccCCeEEEEECC----------------CccceeeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCcee---E
Q psy17243          3 GMDCLVNVWQMN----------------SHELQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVV---S   62 (392)
Q Consensus         3 ~~dg~i~vwd~~----------------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~---~   62 (392)
                      +..|.|+||++.                ..+++.++.+|...=++++|||- ...|++|..-+.|++|...++.-.   .
T Consensus       172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~  251 (440)
T KOG0302|consen  172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR  251 (440)
T ss_pred             cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc
Confidence            467999999983                24567778899999999999992 235889988899999999887543   3


Q ss_pred             EecccccceEEEEEecCC-CEEEEEeCCCeEEEEEcCCcee-----eeecccceeEEEEeCCCCEEEEecCCCcEEEEeC
Q psy17243         63 TFKSHQSTILAVAVLSDS-RRVVTSDKAGVIAVWVADNAQL-----LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPT  136 (392)
Q Consensus        63 ~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~  136 (392)
                      .+.+|...|..++|+|.. ..|++|+-||.|+|||++.+..     ...+...++.+.|+....+|++|+.||.++|||+
T Consensus       252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL  331 (440)
T KOG0302|consen  252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDL  331 (440)
T ss_pred             cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence            455699999999999975 5789999999999999998832     3456678999999999999999999999999999


Q ss_pred             CCCCCCCcceeeeccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCCe----------------EEEEEecC--CCce
Q psy17243        137 SPQTHKDDERFTVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVGGK----------------LAQVLVGH--TDHV  197 (392)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~--~~~v  197 (392)
                      +.-+.......+.-|..+|+++.|+|. ...|++++.|.+|.|||+....                +.+.+.-|  ...+
T Consensus       332 R~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~  411 (440)
T KOG0302|consen  332 RQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEV  411 (440)
T ss_pred             hhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHh
Confidence            987777777777889999999999996 5678888899999999984321                01112224  3457


Q ss_pred             eEEEEecCCCcEEEEecCCCe
Q psy17243        198 SCVAVAVTNKSLVVSGSKDSN  218 (392)
Q Consensus       198 ~~~~~~~~~~~~l~~~~~dg~  218 (392)
                      ..+.|++....++++.+.||.
T Consensus       412 KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  412 KEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             hhheeccCCCCeEEEecccce
Confidence            788999888889999888874

>KOG0321|consensus

Probab=99.90  E-value=7.6e-22  Score=169.46  Aligned_cols=245  Identities=16%  Similarity=0.238  Sum_probs=182.7

Q ss_pred             CccCCeEEEEECCCccce------eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEE--ecccccceEE
Q psy17243          2 GGMDCLVNVWQMNSHELQ------STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST--FKSHQSTILA   73 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~------~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~   73 (392)
                      +..||.|.++|....+..      +....|...|..+.|.|....|++++.|.++++||+++.+++..  +.+|...|.+
T Consensus        70 adE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS  149 (720)
T KOG0321|consen   70 ADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKS  149 (720)
T ss_pred             ecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccch
Confidence            567999999998754333      44556999999999999777899999999999999999998877  8899999999


Q ss_pred             EEEecCCC-EEEEEeCCCeEEEEEcCCcee--------------------eee----------cccceeE---EEEeCCC
Q psy17243         74 VAVLSDSR-RVVTSDKAGVIAVWVADNAQL--------------------LYS----------ALGPSKC---LTVTHNM  119 (392)
Q Consensus        74 ~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~--------------------~~~----------~~~~~~~---~~~~~~~  119 (392)
                      ++|.|... .+++|+.||.|.|||++-...                    ...          ....+..   +.+..|.
T Consensus       150 ~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe  229 (720)
T KOG0321|consen  150 ECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE  229 (720)
T ss_pred             hhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc
Confidence            99999765 678999999999999863320                    000          0011222   4556788


Q ss_pred             CEEEEecC-CCcEEEEeCCCCCCCCccee-----eecc---ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe--EEE
Q psy17243        120 KYIVSGDG-DNSLRIWPTSPQTHKDDERF-----TVSH---SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK--LAQ  188 (392)
Q Consensus       120 ~~l~~~~~-d~~i~~~d~~~~~~~~~~~~-----~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~  188 (392)
                      ..|++++. |+.|+|||++..........     ...+   ...+.++.....|.+|++.+.|+.|+.|++....  ++.
T Consensus       230 ~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~  309 (720)
T KOG0321|consen  230 STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVA  309 (720)
T ss_pred             ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchh
Confidence            88998887 99999999986543211111     0112   3456777777778999999999999999997643  344


Q ss_pred             EEecCCC-cee-EEEEecCCCcEEEEecCCCeEEEEECCCCce-eeeecccccceeEEEEcC
Q psy17243        189 VLVGHTD-HVS-CVAVAVTNKSLVVSGSKDSNLIVWDMETGGE-EHFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       189 ~~~~~~~-~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~  247 (392)
                      .+.++.. .++ .-..+ +++.++++|+.|...++|.+.+.+. ...+.+|...|++++|.|
T Consensus       310 ~~sg~~~~sf~vks~lS-pd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  310 EFSGKLNSSFYVKSELS-PDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             hccCcccceeeeeeecC-CCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence            4443322 111 11344 7889999999999999999998764 456778999999999976

>KOG1445|consensus

Probab=99.90  E-value=6.6e-22  Score=169.99  Aligned_cols=219  Identities=12%  Similarity=0.124  Sum_probs=147.8

Q ss_pred             CCCcEEEEeCCCCCCCCc-ceeeeccccceEEEEEEc-CCCEEEEeeCCCcEEEEEcCCC-------eEEEEEecCCCce
Q psy17243        127 GDNSLRIWPTSPQTHKDD-ERFTVSHSEEITCFTVTW-DSQYLITGSRDMSLKVWQVVGG-------KLAQVLVGHTDHV  197 (392)
Q Consensus       127 ~d~~i~~~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v  197 (392)
                      ..|.|-||+++....... ..-.......|+.+.|.| |...|++++.||.|++|.+..+       .+...+..|...|
T Consensus       601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI  680 (1012)
T KOG1445|consen  601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI  680 (1012)
T ss_pred             CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence            345666666653322211 111123456789999998 5678999999999999998654       4556788999999


Q ss_pred             eEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccc
Q psy17243        198 SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVS  277 (392)
Q Consensus       198 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (392)
                      +.+.|+|--.+.|++++.|-+|++||+.+.+....+.+|.+.|..++|||||+.+++-.++++.........       .
T Consensus       681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~-------e  753 (1012)
T KOG1445|consen  681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR-------E  753 (1012)
T ss_pred             EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC-------C
Confidence            999999888899999999999999999999999999999999999999999999999887765432111100       0


Q ss_pred             cceeEEEeccCCcceeEEEeecccccceeEEEeeccccc----eecceeccC----------------CCCCCChhhhhh
Q psy17243        278 LDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEI----SKIPIKDNV----------------GSQGLGPEQAAL  337 (392)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~----~~~~~~~~~----------------~~~~~s~dg~~l  337 (392)
                      ...|+     |.-+.....+.+..-.++++++..+.|..    +.++.+...                --+.+.+|...|
T Consensus       754 ~pv~E-----g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~l  828 (1012)
T KOG1445|consen  754 QPVYE-----GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVL  828 (1012)
T ss_pred             Ccccc-----CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceE
Confidence            00111     11111122222333345566666655542    222222111                011566888888


Q ss_pred             hcccChHHHHHHhhCCCCCC
Q psy17243        338 AQSQHFDQLEALWNKKSPPR  357 (392)
Q Consensus       338 a~s~~~d~~i~~Wd~~~~~~  357 (392)
                      .++|-.|..|.+|.+.....
T Consensus       829 fltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  829 FLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             EEecCCCceEEEEEecCCCc
Confidence            88999999999999866554

>KOG2919|consensus

Probab=99.89  E-value=1.7e-21  Score=154.24  Aligned_cols=207  Identities=20%  Similarity=0.303  Sum_probs=157.2

Q ss_pred             CeeEEEecCCCCeEEEEeCCCeEEEEeCCCC------------ceeEEec-ccccceEEEEEe-------cCCCEEEEEe
Q psy17243         28 TVSCVAISPNSIFAVSGSEDNTAKVWGLTLG------------SVVSTFK-SHQSTILAVAVL-------SDSRRVVTSD   87 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~------------~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~   87 (392)
                      -...+.|+|||..|++-+.|..+.+|++...            +....++ .....|...+|-       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            3457899999999999999999999998521            1111111 134567777775       6778999999


Q ss_pred             CCCeEEEEEcCCceeeeeccc--------ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee-----eccccc
Q psy17243         88 KAGVIAVWVADNAQLLYSALG--------PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT-----VSHSEE  154 (392)
Q Consensus        88 ~d~~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~~~~  154 (392)
                      .+.-|++||.-+++....+..        ...+++|+|||.+|++|. .+.|++||+............     .+..+-
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            999999999999988665443        346899999999999875 578999999432222222211     233567


Q ss_pred             eEEEEEEcCC-CEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecC-CCeEEEEECCCC-ceee
Q psy17243        155 ITCFTVTWDS-QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK-DSNLIVWDMETG-GEEH  231 (392)
Q Consensus       155 v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~  231 (392)
                      +.+++|+|-. +.+++|+...++-||.-..+.++..+-+|.+.|+.++|. ++++.|++|.. |-.|..||++.- .++.
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~-edGn~lfsGaRk~dkIl~WDiR~~~~pv~  288 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC-EDGNKLFSGARKDDKILCWDIRYSRDPVY  288 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec-cCcCeecccccCCCeEEEEeehhccchhh
Confidence            8899999964 589999999999999998999999999999999999999 66667777764 788999999854 3444


Q ss_pred             eeccc
Q psy17243        232 FLAGH  236 (392)
Q Consensus       232 ~~~~~  236 (392)
                      .+..|
T Consensus       289 ~L~rh  293 (406)
T KOG2919|consen  289 ALERH  293 (406)
T ss_pred             hhhhh
Confidence            55544

>KOG1034|consensus

Probab=99.89  E-value=1.1e-21  Score=155.72  Aligned_cols=221  Identities=16%  Similarity=0.267  Sum_probs=167.9

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCceeEEec---ccccceEEEEEe
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFK---SHQSTILAVAVL   77 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~   77 (392)
                      ||.-|.|+|.|+.+++....+.+|...|+.+.+.|+ .++++++|.|..|++|++++..++..+.   +|...|.++.|+
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~  190 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS  190 (385)
T ss_pred             ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence            668899999999999999999999999999999995 4789999999999999999999988775   699999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCceeeeeccc-------------------------------ceeEEEEeCCCCEEEEec
Q psy17243         78 SDSRRVVTSDKAGVIAVWVADNAQLLYSALG-------------------------------PSKCLTVTHNMKYIVSGD  126 (392)
Q Consensus        78 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~l~~~~  126 (392)
                      +++.+|++++.|..+++|++...+....++.                               .+.|+.|  -|+++++-+
T Consensus       191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSks  268 (385)
T KOG1034|consen  191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKS  268 (385)
T ss_pred             CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hhhheeecc
Confidence            9999999999999999999985432211110                               1111212  257788888


Q ss_pred             CCCcEEEEeCCCCCCC-C----------cceeeeccccceEEEEE--EcCCCEEEEeeCCCcEEEEEcCCCeEE--EEEe
Q psy17243        127 GDNSLRIWPTSPQTHK-D----------DERFTVSHSEEITCFTV--TWDSQYLITGSRDMSLKVWQVVGGKLA--QVLV  191 (392)
Q Consensus       127 ~d~~i~~~d~~~~~~~-~----------~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~  191 (392)
                      .++.|..|........ .          ......-....+.-+.|  .|-++.|+.|...|.|++||++...+.  .++.
T Consensus       269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~  348 (385)
T KOG1034|consen  269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT  348 (385)
T ss_pred             cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE
Confidence            8999999977211110 0          00011112234444444  455889999999999999999877652  1222


Q ss_pred             --cCCCceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        192 --GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       192 --~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                        .....|...+|+ .++.+|+..+.|+.|.-||..
T Consensus       349 ~s~~~~tVRQ~sfS-~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  349 HSKSGSTVRQTSFS-RDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eccccceeeeeeec-ccCcEEEEEeCCCcEEEEEee
Confidence              123568889999 889999999999999999853

>KOG4378|consensus

Probab=99.89  E-value=3.7e-21  Score=160.71  Aligned_cols=281  Identities=14%  Similarity=0.156  Sum_probs=207.5

Q ss_pred             CccCCeEEEEECCCccceeeeccCC--cCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCCc---eeEEecccccceEEEE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHL--NTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLGS---VVSTFKSHQSTILAVA   75 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~   75 (392)
                      ++....+++||+...+....+..|+  -.+.+++|+.... .+++.+.|..+++|.-. ++   ....-+.....-.|++
T Consensus         8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~gd~~~Cv~   86 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTGDNAFCVA   86 (673)
T ss_pred             eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeeccccchHHHHh
Confidence            3455679999998766665554433  3489999988663 23344568889999733 33   1111111122334555


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCceee---eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQLL---YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS  152 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  152 (392)
                      ......++++|+..+.|+|||++...+.   ..+...++++.++....+|++++..|.|.+..+.+......+  .....
T Consensus        87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f--~~~sg  164 (673)
T KOG4378|consen   87 CASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF--TIDSG  164 (673)
T ss_pred             hhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce--ecCCC
Confidence            5555689999999999999999966443   445567889999999999999999999999998765444332  22345


Q ss_pred             cceEEEEEEcCCC-EEEEeeCCCcEEEEEcCCCeEEEEE-ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        153 EEITCFTVTWDSQ-YLITGSRDMSLKVWQVVGGKLAQVL-VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       153 ~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      ..|.-+.|+|..+ +|.+++.+|.|.+||+....++..+ ..|..+...|+|+|.+..+|++.+.|..|.+||....+..
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~  244 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST  244 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence            6677899999866 4667888999999999887776554 5799999999999999999999999999999999977766


Q ss_pred             eeecccccceeEEEEcCCCeEEEEcCCCCCC-----CCCCCccccccccccccceeEEEec
Q psy17243        231 HFLAGHLGCVTCVKLAGDGTVAMSDLPPSRP-----AGPKRPLRRLLKKEVSLDTYTWQRK  286 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  286 (392)
                      ..+. ...+...++|+++|.+++.+...++.     ...+.|+..+......+....|+..
T Consensus       245 ~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  245 DRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             ceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            6554 56789999999999999998766554     3445566666666666777777654

>KOG1007|consensus

Probab=99.89  E-value=5.2e-21  Score=149.27  Aligned_cols=239  Identities=19%  Similarity=0.272  Sum_probs=180.8

Q ss_pred             CCeEEEEECCCc--cc-eeeeccCCcCeeEEEecC-CCCeEEEEeCC-------CeEEEEeCCCC---------ceeEEe
Q psy17243          5 DCLVNVWQMNSH--EL-QSTMEGHLNTVSCVAISP-NSIFAVSGSED-------NTAKVWGLTLG---------SVVSTF   64 (392)
Q Consensus         5 dg~i~vwd~~~~--~~-~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d-------g~v~iwd~~~~---------~~~~~~   64 (392)
                      |+.|.+.++...  .+ .+.|..|.+.|+.++-+| +.+.|+++..+       ..+.||.+...         +++..+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            566777766543  22 244666889999999999 55666666542       34779988643         233344


Q ss_pred             c-ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee-eeecc--------cceeEEEEeC--CCCEEEEecCCCcEE
Q psy17243         65 K-SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL-LYSAL--------GPSKCLTVTH--NMKYIVSGDGDNSLR  132 (392)
Q Consensus        65 ~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~--------~~~~~~~~~~--~~~~l~~~~~d~~i~  132 (392)
                      . .+-+.|.|+.|.|++..+++-. +..|.+|++..+.. .....        ....+-+|+|  +++.+++. .|+++.
T Consensus       119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~  196 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ  196 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence            3 3456899999999999998876 88899999988765 22221        2345667877  77777665 578999


Q ss_pred             EEeCCCCCCCCcceeeeccccceEEEEEEcCCC-EEEEeeCCCcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEE
Q psy17243        133 IWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQ-YLITGSRDMSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLV  210 (392)
Q Consensus       133 ~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l  210 (392)
                      .||+++...  ...+..+|...|..+.|+|+.+ +|++++.||.|+|||.++. .+++.+.+|...|.++.|+|..++++
T Consensus       197 ~~D~RT~~~--~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi  274 (370)
T KOG1007|consen  197 FWDLRTMKK--NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI  274 (370)
T ss_pred             EEEccchhh--hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence            999995443  3445568999999999999855 6888999999999999865 57889999999999999999999999


Q ss_pred             EEecCCCeEEEEECCCC-----------------------------ceeeeecccccceeEEEEcC
Q psy17243        211 VSGSKDSNLIVWDMETG-----------------------------GEEHFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       211 ~~~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~  247 (392)
                      ++|+.|..|.+|....-                             ..+.++..|+..|.+++||.
T Consensus       275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs  340 (370)
T KOG1007|consen  275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS  340 (370)
T ss_pred             EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence            99999999999965321                             12345677899999999986

>KOG4328|consensus

Probab=99.89  E-value=2.9e-21  Score=159.66  Aligned_cols=254  Identities=16%  Similarity=0.159  Sum_probs=197.0

Q ss_pred             CCccCCeEEEEECCCc----cceeeeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCce--eEEecccccceEE
Q psy17243          1 MGGMDCLVNVWQMNSH----ELQSTMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSV--VSTFKSHQSTILA   73 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~   73 (392)
                      +|..-|+|-+||+.+.    ..+..+..|..+|.+|.|+| +...+++.|.||+|++-|++.+..  +..+......+.+
T Consensus       205 ~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~  284 (498)
T KOG4328|consen  205 VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSS  284 (498)
T ss_pred             EccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeee
Confidence            4778899999999532    23455678999999999999 556899999999999999987744  3333334556788


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCcee----eeecccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCCCc-cee
Q psy17243         74 VAVLSDSRRVVTSDKAGVIAVWVADNAQL----LYSALGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHKDD-ERF  147 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~  147 (392)
                      +.|+.+...++.+..-|.+.+||++++..    +..+...+..++++|- ..+|++++.|++.+|||++....+.. ...
T Consensus       285 ~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls  364 (498)
T KOG4328|consen  285 LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS  364 (498)
T ss_pred             ccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee
Confidence            89998888899998889999999987754    3445568999999994 56789999999999999997666553 455


Q ss_pred             eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcC----CCeEEEEEecCCC------ceeEEEEecCCCcEEEEecCCC
Q psy17243        148 TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV----GGKLAQVLVGHTD------HVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                      ...|...|.+..|+|.+..|++.+.|..|+|||..    ...+...+. |..      ......|. ++..+++.|-.-.
T Consensus       365 t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~-P~~~li~vg~~~r  442 (498)
T KOG4328|consen  365 TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWD-PDYNLIVVGRYPR  442 (498)
T ss_pred             cccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeC-CCccEEEEeccCc
Confidence            56899999999999998779999999999999983    333444443 322      22345799 5888999999999


Q ss_pred             eEEEEECCCCceeeeeccccc-ceeEE-EEcCCCeEEEEcC
Q psy17243        218 NLIVWDMETGGEEHFLAGHLG-CVTCV-KLAGDGTVAMSDL  256 (392)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~-~v~~~-~~~~dg~~~~~~~  256 (392)
                      .|-|+|-..++.+..+..... .|.++ .|+|-+..++++.
T Consensus       443 ~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~  483 (498)
T KOG4328|consen  443 PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGG  483 (498)
T ss_pred             ceeEEcCCCCEEeeeccCccccccccceeecccccceeccC
Confidence            999999988887777655443 55544 7899887666654

>KOG0307|consensus

Probab=99.88  E-value=1.5e-22  Score=184.87  Aligned_cols=226  Identities=15%  Similarity=0.233  Sum_probs=185.4

Q ss_pred             CCccCCeEEEEECCC------ccceeeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCceeEEec--ccccce
Q psy17243          1 MGGMDCLVNVWQMNS------HELQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFK--SHQSTI   71 (392)
Q Consensus         1 tg~~dg~i~vwd~~~------~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v   71 (392)
                      .|..||.|.+||...      ...+.+...|++.|..+.|++. +++||+|+.||.|.|||+.+.+......  ...+.|
T Consensus        85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI  164 (1049)
T KOG0307|consen   85 GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEI  164 (1049)
T ss_pred             ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccc
Confidence            378899999999864      2455667789999999999995 4599999999999999998866554442  245789


Q ss_pred             EEEEEecCC-CEEEEEeCCCeEEEEEcCCceeeeeccc-----ceeEEEEeCCC-CEEEEecCCC---cEEEEeCCCCCC
Q psy17243         72 LAVAVLSDS-RRVVTSDKAGVIAVWVADNAQLLYSALG-----PSKCLTVTHNM-KYIVSGDGDN---SLRIWPTSPQTH  141 (392)
Q Consensus        72 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~-~~l~~~~~d~---~i~~~d~~~~~~  141 (392)
                      .+++|+..- ..|++++.+|.+.|||++..+.+..+..     ....+.|+|+. ..+++++.|.   .|.+||++... 
T Consensus       165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-  243 (1049)
T KOG0307|consen  165 KCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-  243 (1049)
T ss_pred             eEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-
Confidence            999998654 4678888999999999999877665543     35589999976 4566666553   68999998433 


Q ss_pred             CCcceeeeccccceEEEEEEcCC-CEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEE
Q psy17243        142 KDDERFTVSHSEEITCFTVTWDS-QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLI  220 (392)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  220 (392)
                       ...+....|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+......+..+.|+|.+...+++++-||.|.
T Consensus       244 -sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~  322 (1049)
T KOG0307|consen  244 -SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS  322 (1049)
T ss_pred             -CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence             2333446899999999999976 88999999999999999999999999988899999999998888999999999999


Q ss_pred             EEECCCCc
Q psy17243        221 VWDMETGG  228 (392)
Q Consensus       221 iwd~~~~~  228 (392)
                      ||.+....
T Consensus       323 I~sl~~~~  330 (1049)
T KOG0307|consen  323 IYSLQGTD  330 (1049)
T ss_pred             eeeeecCC
Confidence            99987654

>KOG0307|consensus

Probab=99.88  E-value=5.8e-22  Score=181.12  Aligned_cols=245  Identities=16%  Similarity=0.239  Sum_probs=191.0

Q ss_pred             cCCeEEEEECC--Cc----cceeeeccCCcCeeEEEecCCCCe----EEEEeCCCeEEEEeCCCC------ceeEEeccc
Q psy17243          4 MDCLVNVWQMN--SH----ELQSTMEGHLNTVSCVAISPNSIF----AVSGSEDNTAKVWGLTLG------SVVSTFKSH   67 (392)
Q Consensus         4 ~dg~i~vwd~~--~~----~~~~~~~~h~~~v~~~~~~~~~~~----l~~~~~dg~v~iwd~~~~------~~~~~~~~~   67 (392)
                      .+.++-+|.+.  +.    +.+..+. -..+.+.++|.+.+..    ||.|..||.|.+||...-      ..+.+...|
T Consensus        37 t~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h  115 (1049)
T KOG0307|consen   37 TSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH  115 (1049)
T ss_pred             cccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc
Confidence            45566666553  22    2333343 3566889999997664    889999999999998652      345667789


Q ss_pred             ccceEEEEEecCCC-EEEEEeCCCeEEEEEcCCceeeeec-----ccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCC
Q psy17243         68 QSTILAVAVLSDSR-RVVTSDKAGVIAVWVADNAQLLYSA-----LGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQT  140 (392)
Q Consensus        68 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~  140 (392)
                      .+.|..+.|++... .|++|+.+|.|.|||+.+.+.....     ...+.+++|+.. .+.|++++.+|.+.|||++..+
T Consensus       116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~  195 (1049)
T KOG0307|consen  116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK  195 (1049)
T ss_pred             CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC
Confidence            99999999999765 9999999999999999987665443     346889999874 4578888899999999998543


Q ss_pred             CCCcceeeeccccceEEEEEEcCC-CEEEEeeCC---CcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEEEEecC
Q psy17243        141 HKDDERFTVSHSEEITCFTVTWDS-QYLITGSRD---MSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK  215 (392)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d---g~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  215 (392)
                      ....+... .....+..++|+|+. ..|++++.|   -.|.+||+|.. .+++.+.+|...|.++.|++.+..+|++++.
T Consensus       196 pii~ls~~-~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk  274 (1049)
T KOG0307|consen  196 PIIKLSDT-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK  274 (1049)
T ss_pred             cccccccC-CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC
Confidence            22222211 222457899999984 456666654   46999999865 4678888999999999999888899999999


Q ss_pred             CCeEEEEECCCCceeeeecccccceeEEEEcCCCe
Q psy17243        216 DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT  250 (392)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~  250 (392)
                      |+.|.+|+.++++.+..+....+.+..+.|.|..-
T Consensus       275 D~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P  309 (1049)
T KOG0307|consen  275 DNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNP  309 (1049)
T ss_pred             CCCeeEecCCCceEeeecCCCCcceeeeeecCCCc
Confidence            99999999999999999999888999999998444

>KOG0270|consensus

Probab=99.87  E-value=7.9e-21  Score=156.54  Aligned_cols=219  Identities=15%  Similarity=0.239  Sum_probs=167.2

Q ss_pred             eEEEecC-------CCCeEEEEeCCCeEEEEeCCCCc---e------------------eEEecccccceEEEEEecC-C
Q psy17243         30 SCVAISP-------NSIFAVSGSEDNTAKVWGLTLGS---V------------------VSTFKSHQSTILAVAVLSD-S   80 (392)
Q Consensus        30 ~~~~~~~-------~~~~l~~~~~dg~v~iwd~~~~~---~------------------~~~~~~~~~~v~~~~~~~~-~   80 (392)
                      .|++|..       .|+|+|.|+.|..|.|||+.--.   +                  -....+|...|.++.|+.+ .
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            5666643       25799999999999999985211   0                  0112358888889988765 3


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      +.|++|+.|.+|++||+.++++...+   ..++.++.|+| ...+|++|+.|+++.++|.+......   ..-...+.|.
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---~~wk~~g~VE  333 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---KEWKFDGEVE  333 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC---ceEEeccceE
Confidence            57899999999999999999886654   46899999998 56789999999999999998522221   1223467899


Q ss_pred             EEEEEcCC-CEEEEeeCCCcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce--eee
Q psy17243        157 CFTVTWDS-QYLITGSRDMSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE--EHF  232 (392)
Q Consensus       157 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~  232 (392)
                      .++|.|.. ..++++..||+++-+|+|+. +++.++++|.++|.++++++....++++++.|+.|++|++.....  +..
T Consensus       334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~  413 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE  413 (463)
T ss_pred             EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence            99999864 56788889999999999986 899999999999999999988899999999999999999875332  221


Q ss_pred             ecccccceeEEEEcCCCeE
Q psy17243        233 LAGHLGCVTCVKLAGDGTV  251 (392)
Q Consensus       233 ~~~~~~~v~~~~~~~dg~~  251 (392)
                      -.-.-+...|+++.|+-..
T Consensus       414 ~~~~~~rl~c~~~~~~~a~  432 (463)
T KOG0270|consen  414 HSFKLGRLHCFALDPDVAF  432 (463)
T ss_pred             ccccccceeecccCCCcce
Confidence            1111234556667776443

>KOG1009|consensus

Probab=99.87  E-value=1.3e-20  Score=153.62  Aligned_cols=257  Identities=18%  Similarity=0.217  Sum_probs=185.6

Q ss_pred             CCccCCeEEEEECCCcc---------ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC--------C------
Q psy17243          1 MGGMDCLVNVWQMNSHE---------LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT--------L------   57 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~--------~------   57 (392)
                      ||+.|..|++|-++..+         ....|..|...|+++.|+|+|..||+|+.+|.|.+|...        +      
T Consensus        31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~k  110 (434)
T KOG1009|consen   31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNK  110 (434)
T ss_pred             cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCc
Confidence            68999999999885432         234567899999999999999999999999999999765        2      


Q ss_pred             --CceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc---cceeEEEEeCCCCEEEEecCCCcEE
Q psy17243         58 --GSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLR  132 (392)
Q Consensus        58 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~  132 (392)
                        -...+.+.+|...|..++|+|++.++++++.|..+++||+..++.+....   ..+..++|.|-.+++++-+.|...+
T Consensus       111 e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~  190 (434)
T KOG1009|consen  111 EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPE  190 (434)
T ss_pred             cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccc
Confidence              12345667899999999999999999999999999999999998876544   4678999999999999998888777


Q ss_pred             EEeCCCCCCCCcce----------------eeeccc----cceEEEEEEcCCCEEEEeeC----CC-----cEEEEEcCC
Q psy17243        133 IWPTSPQTHKDDER----------------FTVSHS----EEITCFTVTWDSQYLITGSR----DM-----SLKVWQVVG  183 (392)
Q Consensus       133 ~~d~~~~~~~~~~~----------------~~~~~~----~~v~~~~~~~~~~~l~~~~~----dg-----~i~i~d~~~  183 (392)
                      .+.+..........                ...-|.    .-...++|+|+|.+|++...    .+     ..++|+-..
T Consensus       191 ~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~  270 (434)
T KOG1009|consen  191 GFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD  270 (434)
T ss_pred             eeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccc
Confidence            77664322111111                000111    12345688999999887642    22     234444332


Q ss_pred             -CeEEEEEecCCCceeEEEEec-----------------CCCcEEEEecCCCeEEEEECCCCceeeeec-ccccceeEEE
Q psy17243        184 -GKLAQVLVGHTDHVSCVAVAV-----------------TNKSLVVSGSKDSNLIVWDMETGGEEHFLA-GHLGCVTCVK  244 (392)
Q Consensus       184 -~~~~~~~~~~~~~v~~~~~~~-----------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~  244 (392)
                       .++...+..-..+...+.++|                 +.+..++.+ ....|+|||.++..++.... -|-..|+.++
T Consensus       271 l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~~P~~~v~nihy~~iTDia  349 (434)
T KOG1009|consen  271 LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTLEPLAVVDNIHYSAITDIA  349 (434)
T ss_pred             ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEEEeccccccceEEEeeeeeeeeccee
Confidence             234444444444555555543                 223344444 45689999999988877554 4888999999


Q ss_pred             EcCCCeEEEEcCCC
Q psy17243        245 LAGDGTVAMSDLPP  258 (392)
Q Consensus       245 ~~~dg~~~~~~~~~  258 (392)
                      |++||.+++..+.+
T Consensus       350 ws~dg~~l~vSS~D  363 (434)
T KOG1009|consen  350 WSDDGSVLLVSSTD  363 (434)
T ss_pred             ecCCCcEEEEeccC
Confidence            99999998886544

>KOG0642|consensus

Probab=99.87  E-value=1.7e-21  Score=165.15  Aligned_cols=234  Identities=18%  Similarity=0.274  Sum_probs=174.7

Q ss_pred             CCccCCeEEEEECC--------CccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC----------ceeE
Q psy17243          1 MGGMDCLVNVWQMN--------SHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG----------SVVS   62 (392)
Q Consensus         1 tg~~dg~i~vwd~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----------~~~~   62 (392)
                      +++.||.+++|+++        ..+.+.++.+|.++|.|+++.+++..+++|+.||+|+.|++...          ....
T Consensus       311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~  390 (577)
T KOG0642|consen  311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG  390 (577)
T ss_pred             EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence            57899999999993        24567889999999999999999999999999999999966421          2345


Q ss_pred             EecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee--eeecccc--eeEEEEeCCCCEEEEecCCCcEEEEeCCC
Q psy17243         63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL--LYSALGP--SKCLTVTHNMKYIVSGDGDNSLRIWPTSP  138 (392)
Q Consensus        63 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  138 (392)
                      .+.+|.+.|+.+++++....|++++.||+++.|+......  .......  ...+.+-...  .+....+.....+++..
T Consensus       391 ~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~  468 (577)
T KOG0642|consen  391 TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDD  468 (577)
T ss_pred             ceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch--hHhhhhhcccccccchh
Confidence            6789999999999999999999999999999999877665  1111111  1233332211  11111222222332221


Q ss_pred             CCCCCcceeee-------ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEE
Q psy17243        139 QTHKDDERFTV-------SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       139 ~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  211 (392)
                      ........+..       .....+..+..+|...+.+++..|+.|+++|..++++++....|...++++++. +++.+|+
T Consensus       469 ~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~-~ng~~l~  547 (577)
T KOG0642|consen  469 MEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAID-PNGPYLM  547 (577)
T ss_pred             hhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeec-CCCceEE
Confidence            11222111111       122456778888999999999999999999999999999999999999999999 7899999


Q ss_pred             EecCCCeEEEEECCCCceeeeecccc
Q psy17243        212 SGSKDSNLIVWDMETGGEEHFLAGHL  237 (392)
Q Consensus       212 ~~~~dg~i~iwd~~~~~~~~~~~~~~  237 (392)
                      +++.|+.+++|.+....++.....|.
T Consensus       548 s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  548 SGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             eecCCceeehhhccchheeecccccc
Confidence            99999999999998887776665553

>KOG2919|consensus

Probab=99.87  E-value=4.9e-20  Score=146.09  Aligned_cols=251  Identities=16%  Similarity=0.257  Sum_probs=190.9

Q ss_pred             ccCCeEEEEECCCc------------cceeeec-cCCcCeeEEEec-------CCCCeEEEEeCCCeEEEEeCCCCceeE
Q psy17243          3 GMDCLVNVWQMNSH------------ELQSTME-GHLNTVSCVAIS-------PNSIFAVSGSEDNTAKVWGLTLGSVVS   62 (392)
Q Consensus         3 ~~dg~i~vwd~~~~------------~~~~~~~-~h~~~v~~~~~~-------~~~~~l~~~~~dg~v~iwd~~~~~~~~   62 (392)
                      +.|..+++|++..-            ++..+++ .....|...+|-       |+..++++.+.+.-|++||.-+|+...
T Consensus        68 sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lra  147 (406)
T KOG2919|consen   68 SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRA  147 (406)
T ss_pred             cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeecccccccc
Confidence            56888999998421            1111111 134567777775       567799999999999999999999887


Q ss_pred             Eecc--ccc---ceEEEEEecCCCEEEEEeCCCeEEEEEc-CCceee----------eecccceeEEEEeCCC-CEEEEe
Q psy17243         63 TFKS--HQS---TILAVAVLSDSRRVVTSDKAGVIAVWVA-DNAQLL----------YSALGPSKCLTVTHNM-KYIVSG  125 (392)
Q Consensus        63 ~~~~--~~~---~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~----------~~~~~~~~~~~~~~~~-~~l~~~  125 (392)
                      .+.+  |..   ...+++|+|||.+|++|. ...|+++|+ +.++.-          ....+-+.|++++|.. ..++++
T Consensus       148 Sy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~g  226 (406)
T KOG2919|consen  148 SYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVG  226 (406)
T ss_pred             chhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeee
Confidence            7764  333   357899999999998875 567999999 444321          1123456799999954 589999


Q ss_pred             cCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcCCC-eEEEEEecCCC-ceeEEEE
Q psy17243        126 DGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVGG-KLAQVLVGHTD-HVSCVAV  202 (392)
Q Consensus       126 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~-~v~~~~~  202 (392)
                      +....+-+|.-.   .........+|.+.|+.++|.++|+.|++|.. +-.|..||++.. .++..+..|.. .-..|.|
T Consensus       227 sY~q~~giy~~~---~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~F  303 (406)
T KOG2919|consen  227 SYGQRVGIYNDD---GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILF  303 (406)
T ss_pred             cccceeeeEecC---CCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEE
Confidence            988888888765   44455566689999999999999999999986 678999999864 46666666655 3334444


Q ss_pred             ec-CCCcEEEEecCCCeEEEEECCC-CceeeeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        203 AV-TNKSLVVSGSKDSNLIVWDMET-GGEEHFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       203 ~~-~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      .- +.+++|++|+.||.|++||+++ +..+..+..+...++.++++|--.++++.+.
T Consensus       304 Dld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  304 DLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             ecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence            31 6789999999999999999998 6668888889999999999999888887653

>KOG1538|consensus

Probab=99.87  E-value=2.1e-20  Score=161.71  Aligned_cols=252  Identities=16%  Similarity=0.218  Sum_probs=199.6

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEE
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV   83 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   83 (392)
                      .+..+.+||.+.|.++.++++|++.|+|++|+.||+.+|+|+.|..|.+|+-.- +-+-.+. |...|.|+.|+|-...|
T Consensus        31 Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYS-H~D~IQCMsFNP~~h~L  108 (1081)
T KOG1538|consen   31 AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYS-HNDAIQCMSFNPITHQL  108 (1081)
T ss_pred             cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeec-cCCeeeEeecCchHHHh
Confidence            466799999999999999999999999999999999999999999999998442 2223333 89999999999999888


Q ss_pred             EEEeCCCeEEEEEcCCceeee-ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc
Q psy17243         84 VTSDKAGVIAVWVADNAQLLY-SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW  162 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (392)
                      ++++-+ ..-+|..+...... .....+.+.+|..||.+++.|-.+|+|.+-+.... .+.......+.+++|.+++|+|
T Consensus       109 asCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE-ek~~I~Rpgg~Nspiwsi~~~p  186 (1081)
T KOG1538|consen  109 ASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE-EKVKIERPGGSNSPIWSICWNP  186 (1081)
T ss_pred             hhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC-cceEEeCCCCCCCCceEEEecC
Confidence            887654 36778777665433 34457788999999999999999999998865422 2222333345778999999999


Q ss_pred             CC-----CEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccc
Q psy17243        163 DS-----QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL  237 (392)
Q Consensus       163 ~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  237 (392)
                      ..     ..+++.....++.+|.+. |+.+..-+.-.-...|+.+. +++.+++.|+.|+.+++|- +.|-.+.++....
T Consensus       187 ~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf-~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D  263 (1081)
T KOG1538|consen  187 SSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYF-TNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQD  263 (1081)
T ss_pred             CCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheec-cCCcEEEEccCCCceEEEe-ecCeEEeeccccc
Confidence            63     478888888899988875 55554333344455688888 7889999999999999996 4577777777778


Q ss_pred             cceeEEEEcCCCeEEEEcCCCCCCC
Q psy17243        238 GCVTCVKLAGDGTVAMSDLPPSRPA  262 (392)
Q Consensus       238 ~~v~~~~~~~dg~~~~~~~~~~~~~  262 (392)
                      ..|..++..|+++..+.+..++.++
T Consensus       264 ~WIWtV~~~PNsQ~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  264 SWIWTVQAKPNSQYVVVGCQDGTIA  288 (1081)
T ss_pred             eeEEEEEEccCCceEEEEEccCeee
Confidence            8999999999999999998775543

>KOG0650|consensus

Probab=99.86  E-value=8e-20  Score=156.13  Aligned_cols=251  Identities=18%  Similarity=0.162  Sum_probs=195.4

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCC--eEEEEeCCCeEEEEeCCCCc-------------------
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSI--FAVSGSEDNTAKVWGLTLGS-------------------   59 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~-------------------   59 (392)
                      +|+.||+|+||.+.++.+++++. ..+.|.|++|+|.+.  .||++-. ..+.|-+..-|.                   
T Consensus       417 sGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~  494 (733)
T KOG0650|consen  417 SGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESE  494 (733)
T ss_pred             ecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccC
Confidence            68999999999999999999987 567899999999764  4444433 335554432110                   


Q ss_pred             ------------------eeEEecccccceEEEEEecCCCEEEEEeCC---CeEEEEEcCCceee---eecccceeEEEE
Q psy17243         60 ------------------VVSTFKSHQSTILAVAVLSDSRRVVTSDKA---GVIAVWVADNAQLL---YSALGPSKCLTV  115 (392)
Q Consensus        60 ------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~---~~~~~~~~~~~~  115 (392)
                                        -++..-.|...|..+.|+..|.||++...+   ..|.|+++......   +...+.+.++.|
T Consensus       495 p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~F  574 (733)
T KOG0650|consen  495 PDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKF  574 (733)
T ss_pred             CcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEe
Confidence                              011222477889999999999999988654   57889998776543   345678899999


Q ss_pred             eCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC-eEEEEEecCC
Q psy17243        116 THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG-KLAQVLVGHT  194 (392)
Q Consensus       116 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~  194 (392)
                      +|...+|++++. ..|++||+..   ....+........|..++++|.|..|+.|+.|+.+..||+.-. ++.+.+..|.
T Consensus       575 HPs~p~lfVaTq-~~vRiYdL~k---qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~  650 (733)
T KOG0650|consen  575 HPSKPYLFVATQ-RSVRIYDLSK---QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE  650 (733)
T ss_pred             cCCCceEEEEec-cceEEEehhH---HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh
Confidence            999999998876 6799999973   3333333456778999999999999999999999999999754 6778888899


Q ss_pred             CceeEEEEecCCCcEEEEecCCCeEEEEECC------CCc---eeeeecccccc----eeEEEEcCCCeEEEEcCCC
Q psy17243        195 DHVSCVAVAVTNKSLVVSGSKDSNLIVWDME------TGG---EEHFLAGHLGC----VTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       195 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~------~~~---~~~~~~~~~~~----v~~~~~~~dg~~~~~~~~~  258 (392)
                      ..++.++|+ ..-.++++|+.||++.|+.-.      ..-   ++..+.+|...    |..+.|+|...++.++..+
T Consensus       651 ~avr~Va~H-~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd  726 (733)
T KOG0650|consen  651 KAVRSVAFH-KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGAD  726 (733)
T ss_pred             hhhhhhhhc-cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCC
Confidence            999999999 677899999999999998532      111   34577888765    8899999999999987644

>KOG1587|consensus

Probab=99.85  E-value=2.2e-19  Score=159.52  Aligned_cols=252  Identities=17%  Similarity=0.199  Sum_probs=192.3

Q ss_pred             CeEEEEECCCc-cceeeeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCce--eE----EecccccceEEEEEe
Q psy17243          6 CLVNVWQMNSH-ELQSTMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSV--VS----TFKSHQSTILAVAVL   77 (392)
Q Consensus         6 g~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~--~~----~~~~~~~~v~~~~~~   77 (392)
                      +.+.||++... .....+. ....|+|++|+| +..+++.|..+|.|.+||+..+..  ..    ....|..++..+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            47999999876 4444444 678899999999 667888999999999999987765  22    223588999999998


Q ss_pred             cCCCE--EEEEeCCCeEEEEEcCCceeee---------------ecccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCC
Q psy17243         78 SDSRR--VVTSDKAGVIAVWVADNAQLLY---------------SALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQ  139 (392)
Q Consensus        78 ~~~~~--l~~~~~d~~i~iwd~~~~~~~~---------------~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~  139 (392)
                      .+..-  +++++.||.|..|+++.-....               .....++++.|.+ +...+++|+.+|.|..-+-...
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            76544  9999999999999876543210               1112456788877 5668999999999876332211


Q ss_pred             CCC-----CcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcC-CCeEEEEEecCCCceeEEEEecCCCcEEEEe
Q psy17243        140 THK-----DDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV-GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       140 ~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  213 (392)
                      ...     ........|.++|+++.++|-...++..+.|.+++||... ...++..+..+...+++++|||.....|+++
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~  460 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV  460 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence            111     1122445688999999999987666555559999999988 7778888888888899999999999999999


Q ss_pred             cCCCeEEEEECCCC--ceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        214 SKDSNLIVWDMETG--GEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       214 ~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      ..||.|.+||+...  .++.+.+.+....+.+.|+++|++++.+...
T Consensus       461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~  507 (555)
T KOG1587|consen  461 DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN  507 (555)
T ss_pred             cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC
Confidence            99999999999753  3455555556677888899999999998644

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=8.5e-18  Score=151.89  Aligned_cols=241  Identities=29%  Similarity=0.540  Sum_probs=193.6

Q ss_pred             ccCCeEEEEECCC-ccceeeeccCCcCeeEEEecCCCCeEEEEeC-CCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          3 GMDCLVNVWQMNS-HELQSTMEGHLNTVSCVAISPNSIFAVSGSE-DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         3 ~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ..|+.+.+|+... ......+..|...|..++|+|++.++++++. |+.+++|+...+..+..+..|...|.+++|+|++
T Consensus       131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  210 (466)
T COG2319         131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG  210 (466)
T ss_pred             CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence            4589999999998 7888889999999999999999998888885 9999999999989999999999999999999999


Q ss_pred             C-EEEEEeCCCeEEEEEcCCceeee-ecccceeE-E-EEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         81 R-RVVTSDKAGVIAVWVADNAQLLY-SALGPSKC-L-TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        81 ~-~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~-~-~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      . .+++++.|+.+++||...+..+. ....+... + .+++++..+++++.++.+++|+......  .......|...+.
T Consensus       211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~  288 (466)
T COG2319         211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVL  288 (466)
T ss_pred             ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEE
Confidence            8 55555999999999988777666 34443332 2 7999998999999999999999985544  1222246789999


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe--cCCCceeEEEEecCCCcEEEEe-cCCCeEEEEECCCCceeeee
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV--GHTDHVSCVAVAVTNKSLVVSG-SKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~  233 (392)
                      ++.|.|++..+++++.|+.+.+||..+........  .|...+..+.+ +++...++.+ ..|+.+.+|++.........
T Consensus       289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  367 (466)
T COG2319         289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL  367 (466)
T ss_pred             EEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEe
Confidence            99999988888888889889999998887766665  78878999999 5553444444 67899999999887733333


Q ss_pred             cccccceeEEEEcC
Q psy17243        234 AGHLGCVTCVKLAG  247 (392)
Q Consensus       234 ~~~~~~v~~~~~~~  247 (392)
                      ... ..+..+.+.+
T Consensus       368 ~~~-~~~~~~~~~~  380 (466)
T COG2319         368 EGH-SNVLSVSFSP  380 (466)
T ss_pred             cCC-ceEEEEEECC
Confidence            322 2278888887

>KOG1538|consensus

Probab=99.85  E-value=9.9e-20  Score=157.66  Aligned_cols=269  Identities=15%  Similarity=0.240  Sum_probs=202.1

Q ss_pred             CeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCC-ceeeeec
Q psy17243         28 TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADN-AQLLYSA  106 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~  106 (392)
                      .|..++|-|||..|+.+. +..+.+||.++|..++++++|+..|.+++|+.||+.+++|+.|..|.+|...- |...+.+
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH   92 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH   92 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence            799999999998877764 45799999999999999999999999999999999999999999999998764 4556678


Q ss_pred             ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE
Q psy17243        107 LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL  186 (392)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  186 (392)
                      ...+.|+.|+|-.+.+++++-+ ..-+|...   .+...+  ......+.+++|..||++|+.|-.+|+|.+-+- ++++
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLs-dFglWS~~---qK~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEe  165 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLS-DFGLWSPE---QKSVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEE  165 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchh-hccccChh---hhhHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCc
Confidence            8899999999999999988764 34577664   222221  134567889999999999999999999999864 4443


Q ss_pred             EEEEe---cCCCceeEEEEecCC----CcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCC
Q psy17243        187 AQVLV---GHTDHVSCVAVAVTN----KSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       187 ~~~~~---~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      ...+.   +.+.+|.+++|+|..    ...++......++.++.+. |+.+..-+...-.-.|+.+.++|.+++.+..++
T Consensus       166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk  244 (1081)
T KOG1538|consen  166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDK  244 (1081)
T ss_pred             ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence            33333   467899999999754    3578888888899999885 666654444455667899999999999987665


Q ss_pred             CCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecc
Q psy17243        260 RPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIP  320 (392)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~  320 (392)
                      ......+.-.++-. -.....|.|...              -++.+++++.|..|+++.-.
T Consensus       245 ~L~~fTR~GvrLGT-vg~~D~WIWtV~--------------~~PNsQ~v~~GCqDGTiACy  290 (1081)
T KOG1538|consen  245 QLSLFTRDGVRLGT-VGEQDSWIWTVQ--------------AKPNSQYVVVGCQDGTIACY  290 (1081)
T ss_pred             ceEEEeecCeEEee-ccccceeEEEEE--------------EccCCceEEEEEccCeeehh
Confidence            54433333323221 122445555433              25566777888888876654

>KOG1188|consensus

Probab=99.85  E-value=8.4e-20  Score=145.78  Aligned_cols=189  Identities=13%  Similarity=0.205  Sum_probs=152.4

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecC--CCCeEEEEeCCCeEEEEeCCCCceeEEec--ccc-cceEEEEE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVWGLTLGSVVSTFK--SHQ-STILAVAV   76 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~-~~v~~~~~   76 (392)
                      +.++|.|++||..+++.+..+++|...++.++|..  ....+.+|+.||+|++||++.......+.  .+. .+..+++.
T Consensus        46 ~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~  125 (376)
T KOG1188|consen   46 SLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL  125 (376)
T ss_pred             EecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence            56789999999999999999999999999999987  45678899999999999999876654443  344 45667777


Q ss_pred             ecCCCEEEEEe----CCCeEEEEEcCCcee-ee----ecccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcce
Q psy17243         77 LSDSRRVVTSD----KAGVIAVWVADNAQL-LY----SALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDER  146 (392)
Q Consensus        77 ~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~----~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  146 (392)
                      ..+++.+++|.    .+-.+.+||++..+. +.    .+...++++.|+| +.+.|++|+.||.|.+||+........+.
T Consensus       126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~  205 (376)
T KOG1188|consen  126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL  205 (376)
T ss_pred             cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH
Confidence            66777777774    356899999998776 33    4556899999999 56799999999999999998665554455


Q ss_pred             eeeccccceEEEEEEcCC-CEEEEeeCCCcEEEEEcCCCeEEEEE
Q psy17243        147 FTVSHSEEITCFTVTWDS-QYLITGSRDMSLKVWQVVGGKLAQVL  190 (392)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~  190 (392)
                      ....+...|.++.|..++ +.+++-+...+..+|+++.+.+...+
T Consensus       206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            555678889999999876 46888888999999999988755444

>KOG0644|consensus

Probab=99.85  E-value=2.1e-21  Score=171.62  Aligned_cols=237  Identities=22%  Similarity=0.357  Sum_probs=185.7

Q ss_pred             cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        17 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      +.++.+.+|...|+|+.|...|.++++|+.|..|+||..+++.++....+|.+.|+.++.+.+...+++++.|..|++|.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            45566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcee---eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcc-eeeeccccc------------------
Q psy17243         97 ADNAQL---LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE-RFTVSHSEE------------------  154 (392)
Q Consensus        97 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~------------------  154 (392)
                      +..+.+   ++.+.+.+++++|+|-.    +.+.||++++||.+-....... .........                  
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            999976   45677789999999965    7788999999998721111100 000000111                  


Q ss_pred             --------eEEEEEEcCC-----------CEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecC
Q psy17243        155 --------ITCFTVTWDS-----------QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK  215 (392)
Q Consensus       155 --------v~~~~~~~~~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  215 (392)
                              ..++++....           .+.+++-.+-.+.+|++.+++..+.+.+|...+..+.++|.+..+..+++.
T Consensus       337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~  416 (1113)
T KOG0644|consen  337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY  416 (1113)
T ss_pred             CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence                    1122222211           223333345567889999999999999999999999999999999999999


Q ss_pred             CCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        216 DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      ||...|||+-.|.+++.+......+....||+||+.++....
T Consensus       417 dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~  458 (1113)
T KOG0644|consen  417 DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDD  458 (1113)
T ss_pred             CCceEeeecccCCcceeeecccceeeccccCCCCceEecCCC
Confidence            999999999998887755433566777889999887766543

>KOG1034|consensus

Probab=99.85  E-value=1.9e-20  Score=148.63  Aligned_cols=236  Identities=19%  Similarity=0.181  Sum_probs=166.4

Q ss_pred             cccceEEEEEEcC----CCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        151 HSEEITCFTVTWD----SQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       151 ~~~~v~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      +......++|+-+    ..++++++.-|.|+|.|+.++++...+.+|...|+.+.+.|.+.+++++++.|..|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            4455566667654    347888999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cceeeee---cccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEecc-------CCccee--E
Q psy17243        227 GGEEHFL---AGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKY-------GHLTSS--I  294 (392)
Q Consensus       227 ~~~~~~~---~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~  294 (392)
                      ..++..+   .+|...|.++.|+++|..++++..+.....+..+...+..+-.....|.-.+..       .|.+..  .
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~  247 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT  247 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence            9998876   568899999999999999999887766555444422222211111111111111       111110  0


Q ss_pred             EEe--ec-ccccceeEEEeeccccceecceec-cCCC-----------------------C-----CCChhhhhhhcccC
Q psy17243        295 MMA--AV-DERLKRRFSVSASMEEISKIPIKD-NVGS-----------------------Q-----GLGPEQAALAQSQH  342 (392)
Q Consensus       295 ~~~--~~-~~~~~~~~~~s~s~d~~~~~~~~~-~~~~-----------------------~-----~~s~dg~~la~s~~  342 (392)
                      .+.  .+ --+.-+.+++|-|-++.+..|... ....                       .     +|.|-++.|| .+.
T Consensus       248 diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la-~gn  326 (385)
T KOG1034|consen  248 DIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA-LGN  326 (385)
T ss_pred             ccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh-hcc
Confidence            000  00 112236788998888888888651 1000                       0     7889999999 889


Q ss_pred             hHHHHHHhhCCCCCCccccccccc---cccCccccccccCccCCCCcccc
Q psy17243        343 FDQLEALWNKKSPPRSRRFEHSMS---KQNSYSSRQHSVDTDELSSPVDE  389 (392)
Q Consensus       343 ~d~~i~~Wd~~~~~~~~~~~~~~~---~~~~~~~~~fspdg~~l~~~~~d  389 (392)
                      ..|.|.+||++..+.+..  ..+.   ....+...+||.||.+|+...+|
T Consensus       327 q~g~v~vwdL~~~ep~~~--ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd  374 (385)
T KOG1034|consen  327 QSGKVYVWDLDNNEPPKC--TTLTHSKSGSTVRQTSFSRDGSILVLVCDD  374 (385)
T ss_pred             CCCcEEEEECCCCCCccC--ceEEeccccceeeeeeecccCcEEEEEeCC
Confidence            999999999987766422  2222   23346668999999999866655

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=3.8e-18  Score=154.16  Aligned_cols=249  Identities=28%  Similarity=0.520  Sum_probs=192.6

Q ss_pred             CccCCeEEEEECCCcc-ceeeeccCC-cCeeEEEe-cCCCC-eEEEEeC-CCeEEEEeCCC-CceeEEecccccceEEEE
Q psy17243          2 GGMDCLVNVWQMNSHE-LQSTMEGHL-NTVSCVAI-SPNSI-FAVSGSE-DNTAKVWGLTL-GSVVSTFKSHQSTILAVA   75 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~-~~~~~~~h~-~~v~~~~~-~~~~~-~l~~~~~-dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~   75 (392)
                      ++.|+.+.+|+..... ....+..+. ..+..+.+ ++++. +++..+. |+.+.+|+... ......+..|...|..+.
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  162 (466)
T COG2319          83 GSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLA  162 (466)
T ss_pred             ecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEE
Confidence            3468999999998876 667777644 37777777 78777 5555444 99999999998 788888999999999999


Q ss_pred             EecCCCEEEEEeC-CCeEEEEEcCCceeeeec---ccceeEEEEeCCCC-EEEEecCCCcEEEEeCCCCCCCCcce-eee
Q psy17243         76 VLSDSRRVVTSDK-AGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMK-YIVSGDGDNSLRIWPTSPQTHKDDER-FTV  149 (392)
Q Consensus        76 ~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~  149 (392)
                      |+|++..+++++. ++.+++|++..+..+...   ...+.++.++|++. .+++++.|+.|++||..   ...... ...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~---~~~~~~~~~~  239 (466)
T COG2319         163 FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS---TGKLLRSTLS  239 (466)
T ss_pred             ECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC---CCcEEeeecC
Confidence            9999998888886 999999999986655544   45788999999998 55555899999999876   222222 334


Q ss_pred             ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE-EEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL-AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      .|.... ...|++++.++++++.|+.+++|+.+.... +..+..|...+.++.|.| .+..+++++.|+.+.+|+..+..
T Consensus       240 ~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~  317 (466)
T COG2319         240 GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGK  317 (466)
T ss_pred             CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCc
Confidence            555554 337999998999999999999999987664 444467889999999995 56666668888899999999888


Q ss_pred             eeeeec--ccccceeEEEEcCCCeEEEEc
Q psy17243        229 EEHFLA--GHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       229 ~~~~~~--~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      ......  .|...+..+.|.+++..++.+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             eEEEeeecccCCceEEEEECCCCCEEEEe
Confidence            776665  777789999984332344443

>KOG1009|consensus

Probab=99.84  E-value=2.9e-20  Score=151.65  Aligned_cols=204  Identities=19%  Similarity=0.297  Sum_probs=153.1

Q ss_pred             CcCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCCc---------eeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         26 LNTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLGS---------VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        26 ~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      ..+|..+.|.++.. .|+||+.|..|++|.++.+.         ....+..|...|+.+.|+|+|..|++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            46799999999776 99999999999999876432         345667899999999999999999999999999999


Q ss_pred             EcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCc
Q psy17243         96 VADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS  175 (392)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (392)
                      ....-...                      ..|....   .. .+.....+....|...+..++|+|+++++++++.|..
T Consensus        93 k~~~~~~~----------------------~~d~e~~---~~-ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns  146 (434)
T KOG1009|consen   93 KQGDVRIF----------------------DADTEAD---LN-KEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS  146 (434)
T ss_pred             EecCcCCc----------------------cccchhh---hC-ccceEEEEEecccccchhhhhccCCCceeeeeeccce
Confidence            76541100                      0000000   00 0011122233468899999999999999999999999


Q ss_pred             EEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec--------c-----------c
Q psy17243        176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA--------G-----------H  236 (392)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~-----------~  236 (392)
                      +++||+..++....+..|...+..++|. +..+++++-+.|...+++.+...+.+....        .           |
T Consensus       147 ~~l~Dv~~G~l~~~~~dh~~yvqgvawD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfh  225 (434)
T KOG1009|consen  147 VRLWDVHAGQLLAILDDHEHYVQGVAWD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFH  225 (434)
T ss_pred             EEEEEeccceeEeeccccccccceeecc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeee
Confidence            9999999999999999999999999999 667788888889888887776544332111        0           1


Q ss_pred             c----cceeEEEEcCCCeEEEEcC
Q psy17243        237 L----GCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       237 ~----~~v~~~~~~~dg~~~~~~~  256 (392)
                      .    .-...++|+|||.++++..
T Consensus       226 DeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  226 DETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             cCchhhhhhhcccCCCCcEEEccc
Confidence            1    1234678999999999864

>KOG1188|consensus

Probab=99.84  E-value=1e-19  Score=145.36  Aligned_cols=195  Identities=15%  Similarity=0.309  Sum_probs=154.9

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEec--CCCEEEEEeCCCeEEEEEcCCceeeeec----c--cce
Q psy17243         39 IFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS--DSRRVVTSDKAGVIAVWVADNAQLLYSA----L--GPS  110 (392)
Q Consensus        39 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~--~~~  110 (392)
                      ..+|++-..|.|++||..+++.+..+++++..++.+.|..  ....+.+++.||+|++||++.......+    .  .+-
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4588888899999999999999999999999999999987  4568999999999999999877543322    1  244


Q ss_pred             eEEEEeCCCCEEEEecC----CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCCe
Q psy17243        111 KCLTVTHNMKYIVSGDG----DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVGGK  185 (392)
Q Consensus       111 ~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~  185 (392)
                      .|++.+-+++.+++|+.    +-.|.+||++..++. ...+...|...|++++|+|. .++|++|+.||.|.+||++...
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccch-hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            56666668888888864    668999999865442 33345679999999999996 6899999999999999997542


Q ss_pred             ---EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec
Q psy17243        186 ---LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA  234 (392)
Q Consensus       186 ---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  234 (392)
                         .+.....|...|.++.|..+.-..+.+-+......+|+++.+.+...+.
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence               2233334778899999995554568888889999999999887654443

>KOG0322|consensus

Probab=99.84  E-value=5.3e-20  Score=141.88  Aligned_cols=244  Identities=16%  Similarity=0.202  Sum_probs=185.9

Q ss_pred             cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-ccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        17 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      .+...+++|.+.|+++.|..+++ |.+|..-|.|++|++.+.+....+. .+...|+.+...|+ ..+.+-+.|+.+.+|
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW   82 (323)
T ss_pred             CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence            45567789999999999998875 8999999999999999998888888 57788999999987 578889999999999


Q ss_pred             EcCCceeeeecc--------------------------------------------------------cceeEEEEeC-C
Q psy17243         96 VADNAQLLYSAL--------------------------------------------------------GPSKCLTVTH-N  118 (392)
Q Consensus        96 d~~~~~~~~~~~--------------------------------------------------------~~~~~~~~~~-~  118 (392)
                      ++..+..+..+.                                                        +.+.|..+.. .
T Consensus        83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c  162 (323)
T KOG0322|consen   83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC  162 (323)
T ss_pred             EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence            887532211100                                                        0111222111 1


Q ss_pred             C--CEEEEecCCCcEEEEeCCCCCCC-------CcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC--e--
Q psy17243        119 M--KYIVSGDGDNSLRIWPTSPQTHK-------DDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG--K--  185 (392)
Q Consensus       119 ~--~~l~~~~~d~~i~~~d~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~--  185 (392)
                      +  -++++|.++|.+.+||+.++...       ........|..+|.++.+.+....=++|+.+..+..|++...  .  
T Consensus       163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq  242 (323)
T KOG0322|consen  163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ  242 (323)
T ss_pred             cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc
Confidence            2  25778899999999999865221       122223468899999999887666678888888999988543  2  


Q ss_pred             EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCC
Q psy17243        186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAG  263 (392)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~  263 (392)
                      ....+.-.+-.+..+.+- ++++++++++.|+.||||+.++.+++..++-|...|++++|+||-.+++.+.++.++..
T Consensus       243 ~~~e~~lknpGv~gvrIR-pD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL  319 (323)
T KOG0322|consen  243 IRKEITLKNPGVSGVRIR-PDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL  319 (323)
T ss_pred             ccceEEecCCCccceEEc-cCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence            112222234567788888 78999999999999999999999999999999999999999999999999887766543

>KOG1963|consensus

Probab=99.84  E-value=1.5e-18  Score=154.94  Aligned_cols=230  Identities=20%  Similarity=0.333  Sum_probs=173.0

Q ss_pred             eccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC---EEEEEeCCCeEEEEEcC
Q psy17243         22 MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR---RVVTSDKAGVIAVWVAD   98 (392)
Q Consensus        22 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~   98 (392)
                      +-+....-..-.|++|+++++... +..|.||...++.++..+..|..++..+.+.|...   ++++++.+|.|++||..
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~   90 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS   90 (792)
T ss_pred             eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence            433333344567899999877765 56899999999999999999999999999988654   67899999999999877


Q ss_pred             Cceeeeecc-----------------------------------------------------------------------
Q psy17243         99 NAQLLYSAL-----------------------------------------------------------------------  107 (392)
Q Consensus        99 ~~~~~~~~~-----------------------------------------------------------------------  107 (392)
                      .++++..+.                                                                       
T Consensus        91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~  170 (792)
T KOG1963|consen   91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN  170 (792)
T ss_pred             CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence            443221110                                                                       


Q ss_pred             -----------------------------------cceeEEEEeCCCCEEEEecCCCcEEEEeCCC-CCCCCcceeeecc
Q psy17243        108 -----------------------------------GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSP-QTHKDDERFTVSH  151 (392)
Q Consensus       108 -----------------------------------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~  151 (392)
                                                         ..++|.+++|++++++++..||+|.+|.--. ...........=|
T Consensus       171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH  250 (792)
T KOG1963|consen  171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH  250 (792)
T ss_pred             CceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence                                               0235678999999999999999999996543 2333444455568


Q ss_pred             ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      ..+|++++|+++|.+|++|+..|.+.+|.+.+++ .+-++.-.++|..+.++ +++.+.+....|+.|.+....+.....
T Consensus       251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~~k~  328 (792)
T KOG1963|consen  251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLEIKS  328 (792)
T ss_pred             ccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchhhhh
Confidence            8999999999999999999999999999999988 55566678899999999 677777777789999999886654433


Q ss_pred             eeccc-----------ccceeEEEEcCCCeEEEE
Q psy17243        232 FLAGH-----------LGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       232 ~~~~~-----------~~~v~~~~~~~dg~~~~~  254 (392)
                      .+.+-           .+-.+.++++|--+.++.
T Consensus       329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl  362 (792)
T KOG1963|consen  329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL  362 (792)
T ss_pred             hccCccCCCccccccccccceeEEEcCCCCceee
Confidence            33321           233556677773333333

>KOG0322|consensus

Probab=99.84  E-value=3.2e-19  Score=137.59  Aligned_cols=222  Identities=16%  Similarity=0.233  Sum_probs=170.9

Q ss_pred             CCccCCeEEEEECCCccceeeec-cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEE--------------e-
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTME-GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST--------------F-   64 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--------------~-   64 (392)
                      +|..-|.|++|++++......++ .|...|+.+...|++ .|.+-+.|+.+.+|++..+..+..              + 
T Consensus        30 sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~  108 (323)
T KOG0322|consen   30 SGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLV  108 (323)
T ss_pred             cccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCceEEEEEccCcceEEEeeeeccccccccceec
Confidence            47788999999999998888888 588899999999984 578888999999999864221100              0 


Q ss_pred             --------------------------------------cccccceEEEEEec-CCC--EEEEEeCCCeEEEEEcCCceee
Q psy17243         65 --------------------------------------KSHQSTILAVAVLS-DSR--RVVTSDKAGVIAVWVADNAQLL  103 (392)
Q Consensus        65 --------------------------------------~~~~~~v~~~~~~~-~~~--~l~~~~~d~~i~iwd~~~~~~~  103 (392)
                                                            ....+.+.+..+.. ++.  .+++|.++|.+.+||+.++..+
T Consensus       109 ~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~  188 (323)
T KOG0322|consen  109 KKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI  188 (323)
T ss_pred             cCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee
Confidence                                                  00113344444322 222  4678889999999999987332


Q ss_pred             -------------eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcc-eeeeccccceEEEEEEcCCCEEEE
Q psy17243        104 -------------YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE-RFTVSHSEEITCFTVTWDSQYLIT  169 (392)
Q Consensus       104 -------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~  169 (392)
                                   ..+..++.++.+.+....=++|+.+..+..|.+......... ....-.+..+..+.+-||++.+++
T Consensus       189 ~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlAT  268 (323)
T KOG0322|consen  189 IQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILAT  268 (323)
T ss_pred             eccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEee
Confidence                         234567788888877777788888889999988754322222 222234456788899999999999


Q ss_pred             eeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        170 GSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       170 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      ++.|+.|++|..++.+++..++-|...|++++|+ ++.+++++++.|+.|.+|++
T Consensus       269 AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs-pd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  269 AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS-PDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cccCCcEEEEEeccCCchhhhhhhhcceeEEEeC-CCCchhhhccCCceEEeeec
Confidence            9999999999999999999999999999999999 67789999999999999986

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=1.4e-18  Score=155.38  Aligned_cols=232  Identities=16%  Similarity=0.117  Sum_probs=165.4

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC---CeEEEEeCCCCce--eEEecccccceEEEEEec
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED---NTAKVWGLTLGSV--VSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~   78 (392)
                      .+..|.+||..... .+.+..|...+...+|+|+|+.|+..+.+   ..|.+||+.+++.  +..+.+   ....++|+|
T Consensus       182 ~~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP  257 (429)
T PRK01742        182 QPYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP  257 (429)
T ss_pred             ceEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC
Confidence            35789999986544 56677788899999999999999887654   4699999988754  333333   344689999


Q ss_pred             CCCEEEEEe-CCCeEEEE--EcCCceeee--ecccceeEEEEeCCCCEEEEec-CCCcEEEEeCCCCCCCCcceeeeccc
Q psy17243         79 DSRRVVTSD-KAGVIAVW--VADNAQLLY--SALGPSKCLTVTHNMKYIVSGD-GDNSLRIWPTSPQTHKDDERFTVSHS  152 (392)
Q Consensus        79 ~~~~l~~~~-~d~~i~iw--d~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~  152 (392)
                      ||+.|+.+. .+|.+.||  |+.+++...  ..........|+|+++.|+..+ .++...+|++.......  ... .+.
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~--~~l-~~~  334 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA--SLV-GGR  334 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEe-cCC
Confidence            999888764 67765555  666554432  2233466899999999877654 57888888775322211  111 222


Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEEC--CCCcee
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM--ETGGEE  230 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~  230 (392)
                      .  ....|+|++++|+..+.++ +.+||+.+++.......+  ....+.|+ +++.+|+.++.++...+|++  .+++.+
T Consensus       335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~s-PdG~~i~~~s~~g~~~~l~~~~~~G~~~  408 (429)
T PRK01742        335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSIS-PNGIMIIYSSTQGLGKVLQLVSADGRFK  408 (429)
T ss_pred             C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceEC-CCCCEEEEEEcCCCceEEEEEECCCCce
Confidence            2  4578999999998887754 667999888754332222  23567899 67888888888888888775  357788


Q ss_pred             eeecccccceeEEEEcCC
Q psy17243        231 HFLAGHLGCVTCVKLAGD  248 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~~d  248 (392)
                      ..+..|.+.+...+|+|-
T Consensus       409 ~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        409 ARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEccCCCCCCCCcccCCC
Confidence            888888888999999974

>KOG4227|consensus

Probab=99.83  E-value=1.3e-18  Score=141.66  Aligned_cols=236  Identities=11%  Similarity=0.119  Sum_probs=175.6

Q ss_pred             eeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC------CceeEEec-ccccceEEEEEecCCCEEEEEeCCCeEE
Q psy17243         21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL------GSVVSTFK-SHQSTILAVAVLSDSRRVVTSDKAGVIA   93 (392)
Q Consensus        21 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~   93 (392)
                      .+.+|.+.|.++.|+.++++|++|+.|..+++|+++.      .+++.... .|.+.|.+++|.....++++|..+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            3567999999999999999999999999999999853      35555444 3568999999999999999999999999


Q ss_pred             EEEcCCceeeeecc-----cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC-CCEE
Q psy17243         94 VWVADNAQLLYSAL-----GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD-SQYL  167 (392)
Q Consensus        94 iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l  167 (392)
                      ..|+++.+.+....     +.+..+..+|..+.|++.+.++.|.+||.+....................+.|+|. ..+|
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li  210 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI  210 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence            99999999887543     36788999999999999999999999999866544444444445667788889996 5678


Q ss_pred             EEeeCCCcEEEEEcCCCeE-EEEE---ecC---CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccc---
Q psy17243        168 ITGSRDMSLKVWQVVGGKL-AQVL---VGH---TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL---  237 (392)
Q Consensus       168 ~~~~~dg~i~i~d~~~~~~-~~~~---~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---  237 (392)
                      ++.+..+-+.+||.+..+. +...   .+.   ...-..+.|+ ++++.|.+--....-.+||+-+.++...-..|+   
T Consensus       211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~-~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS-PSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC-CCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            8888889999999987542 2111   111   1122467899 566666666556666778887755433222232   


Q ss_pred             ----cceeEEEEcCCCeEEEEcCCC
Q psy17243        238 ----GCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       238 ----~~v~~~~~~~dg~~~~~~~~~  258 (392)
                          ..+.+++|..|-. ++++.++
T Consensus       290 Y~N~~T~KS~~F~~D~~-v~tGSD~  313 (609)
T KOG4227|consen  290 YCNIKTIKSMTFIDDYT-VATGSDH  313 (609)
T ss_pred             ceeeeeeeeeeeeccee-eeccCcc
Confidence                2466778877765 5665543

>KOG0642|consensus

Probab=99.83  E-value=2.6e-19  Score=152.04  Aligned_cols=242  Identities=17%  Similarity=0.206  Sum_probs=182.7

Q ss_pred             eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC--------CceeEEecccccceEEEEEecCCCEEEEEeCCCe
Q psy17243         20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL--------GSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGV   91 (392)
Q Consensus        20 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   91 (392)
                      .++..|...|+.++|.|....|++++.||++++|+++.        -+++.++.+|.++|.|+++.+++..+++|+.||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            35667999999999999999999999999999999932        2567899999999999999999999999999999


Q ss_pred             EEEEEcCCc-------------eeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEE
Q psy17243         92 IAVWVADNA-------------QLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF  158 (392)
Q Consensus        92 i~iwd~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~  158 (392)
                      |+.|++...             ..+..+...+..+++++....|++++.||+++.|+...... ...... .......++
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~-~e~g~Plsv  445 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP-KEHGYPLSV  445 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc-cccCCcceE
Confidence            999966422             12333445677889999999999999999999999864333 111111 122333455


Q ss_pred             EEEcCC-CEEEEeeCCCcEEEEEcCCCeEEEEEecC-------CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        159 TVTWDS-QYLITGSRDMSLKVWQVVGGKLAQVLVGH-------TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       159 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      .+.... .+.++...-+.-.+++......+..+...       ...+..+.+. ++..+.+++..|+.|+++|..+++.+
T Consensus       446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~-~~~~~~~~~hed~~Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH-PTADITFTAHEDRSIRFFDNKTGKIL  524 (577)
T ss_pred             eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec-CCCCeeEecccCCceecccccccccc
Confidence            554332 33444434444455555555544444321       2345667777 66789999999999999999999999


Q ss_pred             eeecccccceeEEEEcCCCeEEEEcCCCCCCCCC
Q psy17243        231 HFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGP  264 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~  264 (392)
                      .....|...++++++.|+|-+++++..+++...+
T Consensus       525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~  558 (577)
T KOG0642|consen  525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLW  558 (577)
T ss_pred             hheeeccceecceeecCCCceEEeecCCceeehh
Confidence            9999999999999999999999999877665443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=3.6e-17  Score=142.06  Aligned_cols=252  Identities=13%  Similarity=0.160  Sum_probs=168.2

Q ss_pred             CccCCeEEEEECCC-cc--ceeeeccCCcCeeEEEecCCCCeEEEEe-CCCeEEEEeCC-CCce--eEEecccccceEEE
Q psy17243          2 GGMDCLVNVWQMNS-HE--LQSTMEGHLNTVSCVAISPNSIFAVSGS-EDNTAKVWGLT-LGSV--VSTFKSHQSTILAV   74 (392)
Q Consensus         2 g~~dg~i~vwd~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~v~iwd~~-~~~~--~~~~~~~~~~v~~~   74 (392)
                      ...++.|++|++.+ ++  .+..+. +......++++|++++|++++ .++.|.+|+++ +++.  +.... .......+
T Consensus         8 ~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i   85 (330)
T PRK11028          8 SPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHI   85 (330)
T ss_pred             cCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEE
Confidence            35689999999964 33  445554 446678899999999887664 57889999987 3432  22222 23356789


Q ss_pred             EEecCCCEEEEEeC-CCeEEEEEcCCce----eeeecc--cceeEEEEeCCCCEEEEec-CCCcEEEEeCCCCCCCCc--
Q psy17243         75 AVLSDSRRVVTSDK-AGVIAVWVADNAQ----LLYSAL--GPSKCLTVTHNMKYIVSGD-GDNSLRIWPTSPQTHKDD--  144 (392)
Q Consensus        75 ~~~~~~~~l~~~~~-d~~i~iwd~~~~~----~~~~~~--~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~--  144 (392)
                      +|+|+++++++++. ++.|.+|++++..    .+....  ....++.++|+++++++++ .++.|.+||+........  
T Consensus        86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~  165 (330)
T PRK11028         86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE  165 (330)
T ss_pred             EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence            99999998888764 7899999997432    222222  2456788999999886655 569999999975322111  


Q ss_pred             -ceeeeccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcCC--C--eEEEEEecCC------CceeEEEEecCCCcEEEE
Q psy17243        145 -ERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVG--G--KLAQVLVGHT------DHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       145 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~~------~~v~~~~~~~~~~~~l~~  212 (392)
                       .............+.|+|++++++++.. ++.|.+|++..  +  +.+..+..+.      .....+.++ ++++++++
T Consensus       166 ~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~-pdg~~lyv  244 (330)
T PRK11028        166 PAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT-PDGRHLYA  244 (330)
T ss_pred             CCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC-CCCCEEEE
Confidence             1111122345678999999999988876 89999999973  2  2333332211      122357888 56666666


Q ss_pred             ec-CCCeEEEEECCCCceeeeeccc---ccceeEEEEcCCCeEEEEcC
Q psy17243        213 GS-KDSNLIVWDMETGGEEHFLAGH---LGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       213 ~~-~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +. .++.|.+|++........+..+   ......+.++|||++++...
T Consensus       245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~  292 (330)
T PRK11028        245 CDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG  292 (330)
T ss_pred             ecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE
Confidence            64 4789999998654322222222   12456889999999998754

>KOG1523|consensus

Probab=99.82  E-value=4.5e-18  Score=134.93  Aligned_cols=235  Identities=14%  Similarity=0.176  Sum_probs=187.9

Q ss_pred             eccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc---eeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcC
Q psy17243         22 MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS---VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD   98 (392)
Q Consensus        22 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   98 (392)
                      +.--..+|+|.+|++|...+|.+.....|.||.....+   ...+++.|...|+.++|.|..+.|++++.|..-++|...
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            33345789999999999999999999999999987654   678889999999999999999999999999999999984


Q ss_pred             C-ce-----eeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCC-CcceeeeccccceEEEEEEcCCCEEEEee
Q psy17243         99 N-AQ-----LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHK-DDERFTVSHSEEITCFTVTWDSQYLITGS  171 (392)
Q Consensus        99 ~-~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  171 (392)
                      . ++     .+.+++...+++.|+|.++.|++|+....|.++-++....- ........+.+.|.+++|+|++-+|++|+
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            3 32     35677889999999999999999999999999988644332 12223345778899999999999999999


Q ss_pred             CCCcEEEEEcC-----C-------------CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc-eeee
Q psy17243        172 RDMSLKVWQVV-----G-------------GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG-EEHF  232 (392)
Q Consensus       172 ~dg~i~i~d~~-----~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~  232 (392)
                      .|+..++|..-     .             |+.+.++....+.+..+.|+ +.+..|+-.+.|..+.+-|...+. .+..
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-~sG~~lawv~Hds~v~~~da~~p~~~v~~  244 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-PSGNRLAWVGHDSTVSFVDAAGPSERVQS  244 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-CCCCEeeEecCCCceEEeecCCCchhccc
Confidence            99999999752     1             12233343456789999999 677788888899999999988765 3344


Q ss_pred             ecccccceeEEEEcCCCeEEEEcCC
Q psy17243        233 LAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       233 ~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      .....-+..++.|-.+..++..+.+
T Consensus       245 ~~~~~lP~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  245 VATAQLPLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             hhhccCCceeeEeecCCceeecCCC
Confidence            4434468888888888877777653

>KOG0290|consensus

Probab=99.82  E-value=2.5e-18  Score=134.52  Aligned_cols=247  Identities=16%  Similarity=0.150  Sum_probs=178.2

Q ss_pred             CeEEEEEC--CCccceeee-ccCCcCeeEEEecCCCC-----eEEEEeCCCeEEEEeCCC--Cce--eEEe-----cccc
Q psy17243          6 CLVNVWQM--NSHELQSTM-EGHLNTVSCVAISPNSI-----FAVSGSEDNTAKVWGLTL--GSV--VSTF-----KSHQ   68 (392)
Q Consensus         6 g~i~vwd~--~~~~~~~~~-~~h~~~v~~~~~~~~~~-----~l~~~~~dg~v~iwd~~~--~~~--~~~~-----~~~~   68 (392)
                      +.|.|-.+  .+++.+..- -.|.-+++.+.|.|+..     +||+++  ..+++|.+..  .+.  ...+     ..+.
T Consensus        73 Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~  150 (364)
T KOG0290|consen   73 NKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFC  150 (364)
T ss_pred             CeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccC
Confidence            34444443  344433322 24899999999999763     566654  4799999873  221  1111     2356


Q ss_pred             cceEEEEEec-CCCEEEEEeCCCeEEEEEcCCce------eeeecccceeEEEEeCCC-CEEEEecCCCcEEEEeCCCCC
Q psy17243         69 STILAVAVLS-DSRRVVTSDKAGVIAVWVADNAQ------LLYSALGPSKCLTVTHNM-KYIVSGDGDNSLRIWPTSPQT  140 (392)
Q Consensus        69 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~  140 (392)
                      .+++++.|+. +-++|.+.+-|-+..|||++++.      .+..+..++..++|...+ +.|++.+.||.+++||++...
T Consensus       151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le  230 (364)
T KOG0290|consen  151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE  230 (364)
T ss_pred             CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence            7899999976 45788999999999999999862      345667789999999854 578899999999999998654


Q ss_pred             CCCcceeeeccccceEEEEEEcC-CCEEEEeeCC-CcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEEEEecCCC
Q psy17243        141 HKDDERFTVSHSEEITCFTVTWD-SQYLITGSRD-MSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d-g~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                      .............+...++|++. .+++++-..| ..|.|.|++.. .++..+++|.+.|+.++|.|.....|++++.|.
T Consensus       231 HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~  310 (364)
T KOG0290|consen  231 HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC  310 (364)
T ss_pred             cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence            44333322222567788888875 5677765554 57999999875 578899999999999999999999999999999


Q ss_pred             eEEEEECCCCce------eeeecccccceeEEEEcC-CCeEEEEc
Q psy17243        218 NLIVWDMETGGE------EHFLAGHLGCVTCVKLAG-DGTVAMSD  255 (392)
Q Consensus       218 ~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~~-dg~~~~~~  255 (392)
                      .+.+||+.+.-.      +..+. ..+.|+.+.|++ .+..++..
T Consensus       311 qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~  354 (364)
T KOG0290|consen  311 QALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAIC  354 (364)
T ss_pred             eEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEE
Confidence            999999975322      12222 456899999985 34455544

>KOG0303|consensus

Probab=99.81  E-value=2.9e-18  Score=139.64  Aligned_cols=203  Identities=16%  Similarity=0.218  Sum_probs=155.5

Q ss_pred             eccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCC-------ceeEEecccccceEEEEEecCC-CEEEEEeCCCeE
Q psy17243         22 MEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLG-------SVVSTFKSHQSTILAVAVLSDS-RRVVTSDKAGVI   92 (392)
Q Consensus        22 ~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i   92 (392)
                      +.+|+++|..++|+| +...||+||.|.+|.||.+..+       +++..+.+|...|-.++|+|.. +.|++++.|..|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            468999999999999 6678999999999999998655       4567888999999999999974 578999999999


Q ss_pred             EEEEcCCceeeeecc--cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecccc-ceEEEEEEcCCCEEEE
Q psy17243         93 AVWVADNAQLLYSAL--GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE-EITCFTVTWDSQYLIT  169 (392)
Q Consensus        93 ~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~  169 (392)
                      .+||+.+++.+.++.  ..+.++.|+.+|.+|++.+.|..|++||.+.++...+.   ..|.+ .-...-|..++..+-+
T Consensus       157 ~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~---~~heG~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  157 SIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG---VAHEGAKPARAIFLASGKIFTT  233 (472)
T ss_pred             EEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec---ccccCCCcceeEEeccCceeee
Confidence            999999998776554  46789999999999999999999999999866544333   23332 2334457778885555


Q ss_pred             ee---CCCcEEEEEcCCCeE---EEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        170 GS---RDMSLKVWQVVGGKL---AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       170 ~~---~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      |-   .+..+-+||..+.+.   ...+.. ...|.---|.+...-+.++|-.|+.||.|.+.+..
T Consensus       234 Gfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            53   367899999876532   233332 33444444664445555677789999999998655

>KOG2110|consensus

Probab=99.81  E-value=4e-17  Score=132.07  Aligned_cols=228  Identities=12%  Similarity=0.133  Sum_probs=174.6

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC--CeEEEEEcCCceee
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA--GVIAVWVADNAQLL  103 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~  103 (392)
                      ...+..+.|+.+...|..|+.|| .++|+.+..............|--+-|+.  .+++..+.+  ..+++++.+.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence            34577778999999999999988 78888776554333333344566666654  355555544  45999999988887


Q ss_pred             eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee--CCCcEEEEEc
Q psy17243        104 YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS--RDMSLKVWQV  181 (392)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~  181 (392)
                      .++.-+..-+++--+.+.|+++-.+. |+|||++..+....+.....+...+..+.+++.+.+++.-+  ..|.|.+||.
T Consensus        82 Ce~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~  160 (391)
T KOG2110|consen   82 CEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT  160 (391)
T ss_pred             EEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence            76655554444444556777776655 99999987666655555545667777777777777888643  4689999999


Q ss_pred             CCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCe-EEEEECCCCceeeeeccc--ccceeEEEEcCCCeEEEEcCCC
Q psy17243        182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSN-LIVWDMETGGEEHFLAGH--LGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      .+.+++..+..|++++.+++|+ ++|.+||+++..|+ |||+.+.+|+.+.++..-  ...|.+++|+||++++......
T Consensus       161 ~nl~~v~~I~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T  239 (391)
T KOG2110|consen  161 INLQPVNTINAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT  239 (391)
T ss_pred             ccceeeeEEEecCCceeEEEEC-CCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence            9999999999999999999999 89999999999987 899999999999988643  3478899999999999887654

>KOG1517|consensus

Probab=99.81  E-value=4.4e-18  Score=154.63  Aligned_cols=253  Identities=16%  Similarity=0.262  Sum_probs=185.0

Q ss_pred             ccCCeEEEEECCCccceeeeccC---CcCeeEEEecC--CCCeEEEEeCCCeEEEEeCC-C----CceeEEecc------
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGH---LNTVSCVAISP--NSIFAVSGSEDNTAKVWGLT-L----GSVVSTFKS------   66 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~~~~--~~~~l~~~~~dg~v~iwd~~-~----~~~~~~~~~------   66 (392)
                      ...-.|+|||.+.++....+..+   ...|+.+++-.  |..++++|+.||.|+||+-. +    .+.+..+.+      
T Consensus      1083 d~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~ 1162 (1387)
T KOG1517|consen 1083 DDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLP 1162 (1387)
T ss_pred             CCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCc
Confidence            34567999999999988887653   46789999876  45689999999999999742 2    233332221      


Q ss_pred             -cccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccc----eeEEEEe-CCCCEEEEecCCCcEEEEeCCCCC
Q psy17243         67 -HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGP----SKCLTVT-HNMKYIVSGDGDNSLRIWPTSPQT  140 (392)
Q Consensus        67 -~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~  140 (392)
                       ..+.=.-+.|.....+|++++.-..|+|||....+........    ++++.-+ ..|+.+++|..||.|++||.+...
T Consensus      1163 ~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1163 GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP 1242 (1387)
T ss_pred             cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC
Confidence             1122244678777778888888999999999998887765543    3333332 357999999999999999999776


Q ss_pred             CCCcceeeeccccc--eEEEEEEcCCC-EEEEeeCCCcEEEEEcCCCeEE--EEEecCC--C-ceeEEEEecCCCcEEEE
Q psy17243        141 HKDDERFTVSHSEE--ITCFTVTWDSQ-YLITGSRDMSLKVWQVVGGKLA--QVLVGHT--D-HVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       141 ~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~--~-~v~~~~~~~~~~~~l~~  212 (392)
                      ..........|...  |..+.+.+.|- .|++|+.+|.|++||++.....  ..+..|-  + ..+++..+ ....++++
T Consensus      1243 ~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH-~hapiiAs 1321 (1387)
T KOG1517|consen 1243 PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH-EHAPIIAS 1321 (1387)
T ss_pred             ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeec-cCCCeeee
Confidence            66666666677776  99999998764 4999999999999999984222  1222232  3 48899888 78889999


Q ss_pred             ecCCCeEEEEECCCCceeeeecc-------cccceeEEEEcCCCeEEEEcCCC
Q psy17243        213 GSKDSNLIVWDMETGGEEHFLAG-------HLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       213 ~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      |+. +.|+||++. |+.+..++.       ..+.+.+++|+|-.-+++.+..+
T Consensus      1322 Gs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1322 GSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred             cCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence            988 999999986 444444332       23467899999988777776543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=1.9e-17  Score=143.73  Aligned_cols=211  Identities=12%  Similarity=0.180  Sum_probs=140.1

Q ss_pred             EEEeCCCeEEEEeCCC-Cc--eeEEecccccceEEEEEecCCCEEEEEe-CCCeEEEEEcCC-cee--eee--cccceeE
Q psy17243         42 VSGSEDNTAKVWGLTL-GS--VVSTFKSHQSTILAVAVLSDSRRVVTSD-KAGVIAVWVADN-AQL--LYS--ALGPSKC  112 (392)
Q Consensus        42 ~~~~~dg~v~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~--~~~--~~~~~~~  112 (392)
                      ++...++.|.+|++.+ ++  .++.+. +.+....++++|++++|++++ .++.|.+|++.. ++.  +..  .......
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            3446789999999964 33  445554 345677899999999987765 578899999873 332  222  2234568


Q ss_pred             EEEeCCCCEEEEecC-CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEE--
Q psy17243        113 LTVTHNMKYIVSGDG-DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQ--  188 (392)
Q Consensus       113 ~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~--  188 (392)
                      +.++|+++++++++. ++.|.+|++..............+......++++|+++++++++ .++.|.+||+.+...+.  
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            999999998888764 88999999964322211111112334567788999999886655 56999999997643221  


Q ss_pred             -----EEecCCCceeEEEEecCCCcEEEEecC-CCeEEEEECCC--Cc--eeeeeccc------ccceeEEEEcCCCeEE
Q psy17243        189 -----VLVGHTDHVSCVAVAVTNKSLVVSGSK-DSNLIVWDMET--GG--EEHFLAGH------LGCVTCVKLAGDGTVA  252 (392)
Q Consensus       189 -----~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~------~~~v~~~~~~~dg~~~  252 (392)
                           ... .......++|+ +++++++++.. ++.|.+|+++.  ++  .+..+...      ......+.++|||+++
T Consensus       165 ~~~~~~~~-~g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l  242 (330)
T PRK11028        165 EPAEVTTV-EGAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL  242 (330)
T ss_pred             CCCceecC-CCCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence                 111 12345678999 56666666654 89999999973  32  23333221      1123468899999988


Q ss_pred             EEc
Q psy17243        253 MSD  255 (392)
Q Consensus       253 ~~~  255 (392)
                      +..
T Consensus       243 yv~  245 (330)
T PRK11028        243 YAC  245 (330)
T ss_pred             EEe
Confidence            875

>KOG0771|consensus

Probab=99.80  E-value=2e-18  Score=141.83  Aligned_cols=195  Identities=15%  Similarity=0.188  Sum_probs=154.7

Q ss_pred             eEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc-
Q psy17243         30 SCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG-  108 (392)
Q Consensus        30 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-  108 (392)
                      .+++|+++|..|++++.||+++||++.+...+.....|...|.++.|+||++.|++.+.| ..+||+.+++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999999888888888899999999999999999999999 899999999966655442 


Q ss_pred             ----ceeEEEEeCCC---C--EEEEecCCCcEEEEeCCCCCCCC--cceeeeccccceEEEEEEcCCCEEEEeeCCCcEE
Q psy17243        109 ----PSKCLTVTHNM---K--YIVSGDGDNSLRIWPTSPQTHKD--DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK  177 (392)
Q Consensus       109 ----~~~~~~~~~~~---~--~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  177 (392)
                          ....+.|+.++   .  .++.....+.|+.|++.......  ...........|++++.+++|++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence                22355566655   2  23333445677777765433321  1112223456899999999999999999999999


Q ss_pred             EEEcCCCeEEEEE-ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        178 VWQVVGGKLAQVL-VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       178 i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      |++..+.+.++.. +.|...|+.+.|+ |+.+++++.+.+....|..+.-
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~-Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFS-PDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEc-CCcCcccccccCCceeEEEEee
Confidence            9999988877655 4799999999999 6777888888888888876653

>KOG0649|consensus

Probab=99.79  E-value=3.9e-17  Score=124.82  Aligned_cols=212  Identities=17%  Similarity=0.245  Sum_probs=160.3

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC----------ceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG----------SVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      ..|.+-+++|.+++|++|+.+|.|.+..+.+.          ..+-..++|+++|+.++|+  ..+|++++ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            45777789999999999999999999988532          2344557899999999998  33566665 59999997


Q ss_pred             cCCcee------eeec----------ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEE
Q psy17243         97 ADNAQL------LYSA----------LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTV  160 (392)
Q Consensus        97 ~~~~~~------~~~~----------~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~  160 (392)
                      ......      +.+.          ...++++...|..+-++.++.|+.++.||+++++   ......+|...+.++.-
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~---i~r~~rGHtDYvH~vv~  164 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR---IQREYRGHTDYVHSVVG  164 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE---EEEEEcCCcceeeeeee
Confidence            654321      1111          1256789999988888888899999999998554   34455689999999988


Q ss_pred             EcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecC---------C-CceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        161 TWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH---------T-DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       161 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      -.....+++|++||++++||.++++.+..+...         . ..|.+++-   +..++++|+ ...+.+|+++..++.
T Consensus       165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslwhLrsse~t  240 (325)
T KOG0649|consen  165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLWHLRSSEST  240 (325)
T ss_pred             cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEEeccCCCce
Confidence            556668999999999999999999988876432         1 23555554   477888775 668999999998887


Q ss_pred             eeecccccceeEEEEcCCC
Q psy17243        231 HFLAGHLGCVTCVKLAGDG  249 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~~dg  249 (392)
                      ..++ -..++..+.|..|-
T Consensus       241 ~vfp-ipa~v~~v~F~~d~  258 (325)
T KOG0649|consen  241 CVFP-IPARVHLVDFVDDC  258 (325)
T ss_pred             EEEe-cccceeEeeeecce
Confidence            7665 34567777776553

>KOG4227|consensus

Probab=99.79  E-value=6.2e-17  Score=132.01  Aligned_cols=254  Identities=12%  Similarity=0.144  Sum_probs=189.6

Q ss_pred             CCccCCeEEEEECC------Cccceeeecc-CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc--cccce
Q psy17243          1 MGGMDCLVNVWQMN------SHELQSTMEG-HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS--HQSTI   71 (392)
Q Consensus         1 tg~~dg~i~vwd~~------~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v   71 (392)
                      +|+.|..+++|+++      +.+++..... |...|.|++|.....++++|..+++|.+.|+++.+.+..+..  ..+.|
T Consensus        73 SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~V  152 (609)
T KOG4227|consen   73 SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDV  152 (609)
T ss_pred             ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccce
Confidence            58999999999985      3455554433 668999999999999999999999999999999998887762  23489


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEcCCcee------eeecccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         72 LAVAVLSDSRRVVTSDKAGVIAVWVADNAQL------LYSALGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        72 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      +.+..+|..+.|++.+.++.|.+||.+..+.      +.........+.|+|. ..+|++.+..+-+.+||.+.......
T Consensus       153 Y~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~  232 (609)
T KOG4227|consen  153 YHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY  232 (609)
T ss_pred             eecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH
Confidence            9999999999999999999999999986652      2223334457788884 46778888899999999985433211


Q ss_pred             ce-eeec---cccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCC-------CceeEEEEecCCCcEEEEe
Q psy17243        145 ER-FTVS---HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT-------DHVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       145 ~~-~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~  213 (392)
                      .. ...+   ....-....|+|+|+.|++--....-.+||+.+.++...-..|.       ..+.+++|.  +..-+++|
T Consensus       233 ~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~--~D~~v~tG  310 (609)
T KOG4227|consen  233 QRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI--DDYTVATG  310 (609)
T ss_pred             hhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeee--cceeeecc
Confidence            11 0111   12233567899999999988777777889988755433222232       245667776  45569999


Q ss_pred             cCCCeEEEEECCCC-----------------------ceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        214 SKDSNLIVWDMETG-----------------------GEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       214 ~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +.+-.|++|.+...                       +.+..+++|...++.+.|+|...++++..
T Consensus       311 SD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSG  376 (609)
T KOG4227|consen  311 SDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSG  376 (609)
T ss_pred             CcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccc
Confidence            99999999987531                       23456789999999999999988888764

>KOG1007|consensus

Probab=99.79  E-value=3.5e-17  Score=128.10  Aligned_cols=215  Identities=20%  Similarity=0.252  Sum_probs=164.7

Q ss_pred             eEEEEECCC---------ccceeeec-cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce-eEEec-----ccccc
Q psy17243          7 LVNVWQMNS---------HELQSTME-GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV-VSTFK-----SHQST   70 (392)
Q Consensus         7 ~i~vwd~~~---------~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~-----~~~~~   70 (392)
                      .+-||.+..         .+.+..+. .+-+.|.|+.|.|++..|++-. |..|.+|+++.+.. +..+.     .+...
T Consensus        94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~  172 (370)
T KOG1007|consen   94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS  172 (370)
T ss_pred             eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence            467888753         23344444 3556899999999999888775 88999999988765 44333     24556


Q ss_pred             eEEEEEec--CCCEEEEEeCCCeEEEEEcCCceeeeeccc----ceeEEEEeCCCC-EEEEecCCCcEEEEeCCCCCCCC
Q psy17243         71 ILAVAVLS--DSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK-YIVSGDGDNSLRIWPTSPQTHKD  143 (392)
Q Consensus        71 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~  143 (392)
                      .++-+|+|  +++.+++. .|+++..||+++.+....+..    .+..+.|+|+.+ +|++++.||.|++||.+..  +.
T Consensus       173 ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--k~  249 (370)
T KOG1007|consen  173 FTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--KF  249 (370)
T ss_pred             ecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--Cc
Confidence            78889988  56666554 688999999998877655443    478899999765 5778889999999999843  34


Q ss_pred             cceeeeccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCC-----------------------------eEEEEEecC
Q psy17243        144 DERFTVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVGG-----------------------------KLAQVLVGH  193 (392)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-----------------------------~~~~~~~~~  193 (392)
                      .+....+|...|.++.|+|. .+++++|+.|..|.+|....-                             ..+.++..|
T Consensus       250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh  329 (370)
T KOG1007|consen  250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH  329 (370)
T ss_pred             cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence            44555689999999999996 568899999999999965311                             123356679


Q ss_pred             CCceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        194 TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       194 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      .+.|++++|+..+.-++++-+.||.+.|=.+.
T Consensus       330 EDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  330 EDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            99999999998888899999999999887765

>KOG0303|consensus

Probab=99.78  E-value=3.1e-17  Score=133.73  Aligned_cols=203  Identities=16%  Similarity=0.210  Sum_probs=154.9

Q ss_pred             CCccCCeEEEEECCCc-------cceeeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCceeEEecccccceE
Q psy17243          1 MGGMDCLVNVWQMNSH-------ELQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTIL   72 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~   72 (392)
                      +|+.|.+|.||.+..+       +.+..|.+|...|--++|+|. .+.|++++.|.+|.+||+.+|+.+-++. |...|.
T Consensus        99 SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~  177 (472)
T KOG0303|consen   99 SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVY  177 (472)
T ss_pred             cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEE
Confidence            6899999999998653       456678899999999999994 4688999999999999999999999988 999999


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccc----eeEEEEeCCCCEEEEec---CCCcEEEEeCCCCCCCCcc
Q psy17243         73 AVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGP----SKCLTVTHNMKYIVSGD---GDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        73 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~  145 (392)
                      ++.|+.+|.+|++.+.|..|+|||.++++.+.+...+    .....|-.++..+-+|.   .+..+-+||......... 
T Consensus       178 S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~-  256 (472)
T KOG0303|consen  178 SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIA-  256 (472)
T ss_pred             EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcce-
Confidence            9999999999999999999999999999998765432    23456667777555554   367899999875443322 


Q ss_pred             eeeeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEE-Eec--CCCceeEEEEecC
Q psy17243        146 RFTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQV-LVG--HTDHVSCVAVAVT  205 (392)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-~~~--~~~~v~~~~~~~~  205 (392)
                      .........|.---|.+|.++++.++ .|+.|+-|.+.+..+... +..  ...+-..+.|-|.
T Consensus       257 ~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  257 LQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             eEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence            22234455666666788888776655 599999999987654322 221  2334455666643

>KOG1524|consensus

Probab=99.78  E-value=5.8e-18  Score=143.21  Aligned_cols=225  Identities=14%  Similarity=0.164  Sum_probs=162.3

Q ss_pred             cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEE-ec-------CCCEEEEEeCCCeEEEE
Q psy17243         24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAV-LS-------DSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l~~~~~d~~i~iw   95 (392)
                      .|...|.|+.|+.+...+.+++. ..+.+|.--+......+...+..+....+ -+       ....++.++.||.+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dD-h~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDD-HQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccC-ceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            37777889999988876666654 45555543333222222222222211111 11       23478889999999888


Q ss_pred             EcCCc--eeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC
Q psy17243         96 VADNA--QLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD  173 (392)
Q Consensus        96 d~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  173 (392)
                      +-...  +.+..+.+.+.+-.|+|+|.-|+++++||.|++|.-..    ...........+|.|++|.|+.+-++.+. .
T Consensus        91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG----MLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g  165 (737)
T KOG1524|consen   91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG----MLRSTVVQNEESIRCARWAPNSNSIVFCQ-G  165 (737)
T ss_pred             cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc----hHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence            65432  33455667788999999999999999999999997531    11122234567899999999976555443 4


Q ss_pred             CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEE
Q psy17243        174 MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       174 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~  253 (392)
                      +.+.|=-+.....+-.+++|.+-|.++.|+ +..+++++|+.|-..+|||.. |+.+..-..|+.+|++++|.||..+++
T Consensus       166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v  243 (737)
T KOG1524|consen  166 GHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLL  243 (737)
T ss_pred             CeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceee
Confidence            567777777777777889999999999999 778899999999999999965 777888888999999999999977777


Q ss_pred             EcC
Q psy17243        254 SDL  256 (392)
Q Consensus       254 ~~~  256 (392)
                      +..
T Consensus       244 ~S~  246 (737)
T KOG1524|consen  244 WSY  246 (737)
T ss_pred             eee
Confidence            754

>KOG2110|consensus

Probab=99.78  E-value=5e-16  Score=125.77  Aligned_cols=216  Identities=14%  Similarity=0.174  Sum_probs=160.3

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC--CeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED--NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      |+.|| -++|+.+..............|.-+-|+..  ++|..+.+  ..+++++++.+..+..+. ...+|.++.++  
T Consensus        23 Gs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--   96 (391)
T KOG2110|consen   23 GSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--   96 (391)
T ss_pred             cCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--
Confidence            44455 456666554442222223344555566544  55555444  459999999999888887 67889999995  


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeecccc------eeEEEEeCCCCEEEEec--CCCcEEEEeCCCCCCCCcceeeecc
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYSALGP------SKCLTVTHNMKYIVSGD--GDNSLRIWPTSPQTHKDDERFTVSH  151 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~  151 (392)
                      .+.|+++-++. |+|||+++.+++.++...      ...+..++.+.+++.-+  ..|.|.+||..   ..........|
T Consensus        97 r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~---nl~~v~~I~aH  172 (391)
T KOG2110|consen   97 RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI---NLQPVNTINAH  172 (391)
T ss_pred             cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc---cceeeeEEEec
Confidence            45677766555 999999999998876542      33444455556777643  46999999997   44455556699


Q ss_pred             ccceEEEEEEcCCCEEEEeeCCCc-EEEEEcCCCeEEEEEecCC--CceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDMS-LKVWQVVGGKLAQVLVGHT--DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      .+++-+++|+++|.+|+++++.|+ |++|.+.+++.+..|+.-.  ..|.+++|+ ++..+|++.+..++|+||.+++-.
T Consensus       173 ~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs-~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  173 KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS-PDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC-CCCCeEEEecCCCeEEEEEecccc
Confidence            999999999999999999999886 6999999999999887433  467899999 788899999999999999988544

>KOG0649|consensus

Probab=99.76  E-value=2.2e-15  Score=115.41  Aligned_cols=235  Identities=16%  Similarity=0.198  Sum_probs=168.6

Q ss_pred             CCccCCeEEEEECCC---------c-cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce------eEEe
Q psy17243          1 MGGMDCLVNVWQMNS---------H-ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV------VSTF   64 (392)
Q Consensus         1 tg~~dg~i~vwd~~~---------~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~   64 (392)
                      +|..+|.|-+..+++         + .++-..++|.++|+.++|..  .+|++|+ ||.|+=|..+....      +-+.
T Consensus        27 agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~  103 (325)
T KOG0649|consen   27 AGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWNEEEESLATKRLWEV  103 (325)
T ss_pred             EecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeeehhhhhhccchhhhhh
Confidence            367899999998853         2 23344578999999999984  3677775 59999998754322      1011


Q ss_pred             --ccc-----ccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccc---eeEEEEeCCCCEEEEecCCCcEEEE
Q psy17243         65 --KSH-----QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGP---SKCLTVTHNMKYIVSGDGDNSLRIW  134 (392)
Q Consensus        65 --~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~~~  134 (392)
                        ..|     -..|+++-..|..+-++.++.|+.++-||+++++..+.+.++   +.++.--.....+++|++||++++|
T Consensus       104 ~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvW  183 (325)
T KOG0649|consen  104 KIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVW  183 (325)
T ss_pred             cCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEE
Confidence              111     245899999999888888889999999999999998877764   4566665666789999999999999


Q ss_pred             eCCCCCCCCcceeee-------ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCC
Q psy17243        135 PTSPQTHKDDERFTV-------SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNK  207 (392)
Q Consensus       135 d~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (392)
                      |.++.+....+....       .....|.+++.  +..+|++|+ ...+.+|.++..++...+. ...++..+.|.   +
T Consensus       184 d~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~---~  256 (325)
T KOG0649|consen  184 DTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFV---D  256 (325)
T ss_pred             eccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeee---c
Confidence            998765543332221       12334556555  456888876 5579999999999888876 46778888886   5


Q ss_pred             cEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEc
Q psy17243        208 SLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLA  246 (392)
Q Consensus       208 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  246 (392)
                      ..+++++..+.|.-|.+. |.....++.......+..|+
T Consensus       257 d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~  294 (325)
T KOG0649|consen  257 DCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQ  294 (325)
T ss_pred             ceEEEeccccceeeeeec-cEEEEeccCCccceeeeccc
Confidence            577788888899999875 55444555444444555554

>KOG1524|consensus

Probab=99.76  E-value=9e-17  Score=136.11  Aligned_cols=238  Identities=16%  Similarity=0.180  Sum_probs=171.9

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEe-cC-------CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEE
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAI-SP-------NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAV   74 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~-------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~   74 (392)
                      ++|..+.+|.-.+......+.-...-|....+ -+       ....|+.++.||.+.|.+ +.++.-..+..|.+.+.+-
T Consensus        32 ~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~g  110 (737)
T KOG1524|consen   32 SDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSARVERSISAHAAAISSG  110 (737)
T ss_pred             ccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhc
Confidence            56777777765444333333322222222111 11       124688889999999998 6677778888999999999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCc--eeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc
Q psy17243         75 AVLSDSRRVVTSDKAGVIAVWVADNA--QLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS  152 (392)
Q Consensus        75 ~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  152 (392)
                      .|+|+|.-|+++++||.|++|.-...  ..+.....++.|++|.|+.+.++.+.. +.+.+=.+.   .......-.+|.
T Consensus       111 RW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~---~n~k~i~WkAHD  186 (737)
T KOG1524|consen  111 RWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLA---ANSKIIRWRAHD  186 (737)
T ss_pred             ccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecc---cccceeEEeccC
Confidence            99999999999999999999986543  234456678999999998887766544 445554443   222233345899


Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeee
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF  232 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  232 (392)
                      +-|.++.|++..+++++|++|-..++||. .|+.+..-..|..+|++++|.| + ..++.++. ++++           .
T Consensus       187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~-nt~R-----------~  251 (737)
T KOG1524|consen  187 GLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNP-E-KDYLLWSY-NTAR-----------F  251 (737)
T ss_pred             cEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeecc-c-cceeeeee-eeee-----------e
Confidence            99999999999999999999999999995 4677777778999999999994 4 44454542 2333           1


Q ss_pred             ecccccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        233 LAGHLGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       233 ~~~~~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      -+...+.|..++||+||..++.+...+.
T Consensus       252 ~~p~~GSifnlsWS~DGTQ~a~gt~~G~  279 (737)
T KOG1524|consen  252 SSPRVGSIFNLSWSADGTQATCGTSTGQ  279 (737)
T ss_pred             cCCCccceEEEEEcCCCceeeccccCce
Confidence            1234568999999999999998876543

>KOG1445|consensus

Probab=99.75  E-value=1.1e-17  Score=144.42  Aligned_cols=186  Identities=16%  Similarity=0.279  Sum_probs=141.8

Q ss_pred             CCccCCeEEEEECCC-------ccceeeeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceE
Q psy17243          1 MGGMDCLVNVWQMNS-------HELQSTMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTIL   72 (392)
Q Consensus         1 tg~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~   72 (392)
                      +|++||.|++|.+..       ......++.|...|+++.|+| -...|+++++|-+|++||+.+++....+.+|.+.|.
T Consensus       645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf  724 (1012)
T KOG1445|consen  645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIF  724 (1012)
T ss_pred             ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCcee
Confidence            478999999999854       345567889999999999999 456899999999999999999999999999999999


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEcCCce-eeeecccce----eEEEEeCCCCEEEEecCC----CcEEEEeCCCCCCCC
Q psy17243         73 AVAVLSDSRRVVTSDKAGVIAVWVADNAQ-LLYSALGPS----KCLTVTHNMKYIVSGDGD----NSLRIWPTSPQTHKD  143 (392)
Q Consensus        73 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~----~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~  143 (392)
                      .++|+|+|+.+++.+.||+|++|+.++.+ .+++-.+++    ..+.|.-+++++++.+.|    ..|.+||........
T Consensus       725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p  804 (1012)
T KOG1445|consen  725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRP  804 (1012)
T ss_pred             EEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCc
Confidence            99999999999999999999999998764 456665554    467888899999887765    568888876433221


Q ss_pred             cceeeeccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCCeE
Q psy17243        144 DERFTVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVGGKL  186 (392)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~  186 (392)
                      ...........+.--.+.+| +.+|++|-.|..|.+|.+-...+
T Consensus       805 l~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  805 LYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             ceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence            11111111111111123445 44677888899999999865443

>KOG1334|consensus

Probab=99.75  E-value=8.3e-18  Score=140.59  Aligned_cols=300  Identities=18%  Similarity=0.160  Sum_probs=199.4

Q ss_pred             cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-ccccceEEEEEecCC--CEEEEEeCCCeEE
Q psy17243         17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSDS--RRVVTSDKAGVIA   93 (392)
Q Consensus        17 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~--~~l~~~~~d~~i~   93 (392)
                      .+...|..|.+.|..+.|+..|..|++|+.|..|.+||+..++....+. +|...|..-.|.|..  ..+++++.||.+ 
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv-  211 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV-  211 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce-
Confidence            3455678899999999999999999999999999999999888776664 688888888887753  345555555544 


Q ss_pred             EEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC-CCEEEEeeC
Q psy17243         94 VWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD-SQYLITGSR  172 (392)
Q Consensus        94 iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~  172 (392)
                                                            ++=.+..............|.++|..++.-|+ ..-|++++.
T Consensus       212 --------------------------------------r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge  253 (559)
T KOG1334|consen  212 --------------------------------------RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE  253 (559)
T ss_pred             --------------------------------------eeeeeccccceecceecccccCccceeeecCCCCCccccccc
Confidence                                                  44333322222223334468899999999987 456899999


Q ss_pred             CCcEEEEEcCCCeEEEEE---ecCCC---ceeEEEEecCCCcEEEEecCCCeEEEEECCCCce------eeeec------
Q psy17243        173 DMSLKVWQVVGGKLAQVL---VGHTD---HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE------EHFLA------  234 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~---~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~------  234 (392)
                      |+.+.-+|++...+...+   ..+..   ....++..|.+.+.+++++.|..+++||.+.-..      +..+.      
T Consensus       254 D~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~  333 (559)
T KOG1334|consen  254 DAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE  333 (559)
T ss_pred             ccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc
Confidence            999999999887554333   22333   5678899988888999999999999999875322      22222      


Q ss_pred             ccccceeEEEEcCCCeEEEEcCCCCCCCCCCCcccccccccccc---ceeEEEeccCCcceeEEEeecccccceeEEEee
Q psy17243        235 GHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSL---DTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSA  311 (392)
Q Consensus       235 ~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  311 (392)
                      ...-.|++++++.++.-++....+..+......+ .....-...   ..|.-....||..+-..-..--..++..|+++|
T Consensus       334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~-~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSG  412 (559)
T KOG1334|consen  334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM-GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSG  412 (559)
T ss_pred             cCcccceeEEecCCccceeeeecccceEEecccc-ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEec
Confidence            1233699999997665555444433322221111 100000000   111111123665544432222234567899999


Q ss_pred             ccccceecceeccC-------------CCCCCChhhhhhhcccChHHHHHHhhCCCCCC
Q psy17243        312 SMEEISKIPIKDNV-------------GSQGLGPEQAALAQSQHFDQLEALWNKKSPPR  357 (392)
Q Consensus       312 s~d~~~~~~~~~~~-------------~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~  357 (392)
                      |+-|.|.+|.....             ....-+|--+.|| +.+-|..||||...+.++
T Consensus       413 SDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA-sSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  413 SDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA-SSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             CccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh-ccCCccceeeecCCcccc
Confidence            99999999976522             1116678889999 889999999998755544

>KOG1587|consensus

Probab=99.75  E-value=2.4e-16  Score=140.31  Aligned_cols=200  Identities=15%  Similarity=0.103  Sum_probs=144.6

Q ss_pred             CeEEEEeCCCCceeEEecccccceEEEEEecCC-CEEEEEeCCCeEEEEEcCCceee---------eecccceeEEEEeC
Q psy17243         48 NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS-RRVVTSDKAGVIAVWVADNAQLL---------YSALGPSKCLTVTH  117 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~---------~~~~~~~~~~~~~~  117 (392)
                      +.+.+|+++........-.-...|.++.|+|.. ..++.|..+|.|.+||+..+...         ..+..++..+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            579999998773333333367899999999965 56778889999999999887552         24455777788866


Q ss_pred             CCC--EEEEecCCCcEEEEeCCCCCCCCccee---------eeccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCCe
Q psy17243        118 NMK--YIVSGDGDNSLRIWPTSPQTHKDDERF---------TVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVGGK  185 (392)
Q Consensus       118 ~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~  185 (392)
                      +..  -+++++.||.|..|+++..........         .......+++++|.+. .+.+++|+++|.|.--+-...+
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            544  499999999999998874332111111         1123456788999875 6789999999988774332221


Q ss_pred             --------EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECC-CCceeeeecccccceeEEEEcCC
Q psy17243        186 --------LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME-TGGEEHFLAGHLGCVTCVKLAGD  248 (392)
Q Consensus       186 --------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~d  248 (392)
                              ....+..|.++|+++.++|-...++++++ |-+++||... ...++..+..+...+++++|||-
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT  452 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence                    23345668899999999988888888777 9999999987 66677777766667777777765

>KOG1240|consensus

Probab=99.75  E-value=3.5e-16  Score=144.58  Aligned_cols=222  Identities=20%  Similarity=0.239  Sum_probs=163.7

Q ss_pred             EECCCccceeeeccCCcCeeEEEecCCC-CeEEEEeCCCeEEEEeCCCC-------ceeEEecccccceEEEEEecCCCE
Q psy17243         11 WQMNSHELQSTMEGHLNTVSCVAISPNS-IFAVSGSEDNTAKVWGLTLG-------SVVSTFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus        11 wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      |+. .|.++..+..|...|..++.++.. .++++||.||+|++||...-       +...++......+.++.+.+.+..
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            443 478888899999999999998854 89999999999999998532       233344445778999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCcee-------eee----cccce-eEEEEeC-CC-CEEEEecCCCcEEEEeCCCCCCCCcceee
Q psy17243         83 VVTSDKAGVIAVWVADNAQL-------LYS----ALGPS-KCLTVTH-NM-KYIVSGDGDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        83 l~~~~~d~~i~iwd~~~~~~-------~~~----~~~~~-~~~~~~~-~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      +++++.||.|.+.+++..+.       .+.    ..+.+ ...++.. .. ..++.+...+.|..||++........+..
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            99999999999998876311       111    11111 1222221 22 37888888999999999865444333333


Q ss_pred             eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe-cCCCceeEEEEecCCC--cEEEEec--CCCeEEEEE
Q psy17243        149 VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV-GHTDHVSCVAVAVTNK--SLVVSGS--KDSNLIVWD  223 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~l~~~~--~dg~i~iwd  223 (392)
                       ...+.|++++.+|.+++++.|+..|.+.+||++-+.++..+. ++..+++.+..+|-.+  ...++++  ..+.|.+|+
T Consensus      1193 -~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 -LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             -ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence             345789999999999999999999999999999888887764 3456788887776444  4555544  478899999


Q ss_pred             CCCCceeeeec
Q psy17243        224 METGGEEHFLA  234 (392)
Q Consensus       224 ~~~~~~~~~~~  234 (392)
                      +.+|.+...+.
T Consensus      1272 ~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1272 METGLRQTVLW 1282 (1431)
T ss_pred             cccCcceEEEE
Confidence            99987655443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=2e-15  Score=134.86  Aligned_cols=232  Identities=15%  Similarity=0.084  Sum_probs=157.5

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeC---CCeEEEEeCCCCceeEEecccccceEEEEEecCCCE
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSE---DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      ..|.++|..... .+.+..+...+...+|+|||+.|+..+.   +..|.+|++.+++..... ...+.+....|+|||+.
T Consensus       179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCE
Confidence            368888887544 4445557778999999999998886542   457999999887643322 23334557899999998


Q ss_pred             EEEE-eCCC--eEEEEEcCCceeeeecc--cceeEEEEeCCCCEEEEecCC-CcEEEE--eCCCCCCCCcceeeeccccc
Q psy17243         83 VVTS-DKAG--VIAVWVADNAQLLYSAL--GPSKCLTVTHNMKYIVSGDGD-NSLRIW--PTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        83 l~~~-~~d~--~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d-~~i~~~--d~~~~~~~~~~~~~~~~~~~  154 (392)
                      |+.. +.+|  .|++||+.+++......  .......|+|+++.|+..+.+ +...+|  |+..+..   ... ......
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~---~~l-t~~~~~  332 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP---QRI-TWEGSQ  332 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe---EEe-ecCCCC
Confidence            8765 4444  58899998876544332  345688999999988776654 444455  5543221   111 123334


Q ss_pred             eEEEEEEcCCCEEEEeeCC---CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCe---EEEEECCCCc
Q psy17243        155 ITCFTVTWDSQYLITGSRD---MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSN---LIVWDMETGG  228 (392)
Q Consensus       155 v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~  228 (392)
                      .....|+|||++|+..+.+   ..|.+||+.+++.. .+.. ........|+ +++.+|+.++.++.   +.++++ +++
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~S-pDG~~i~~~s~~~~~~~l~~~~~-~G~  408 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIA-PNGTMVIYSSSQGMGSVLNLVST-DGR  408 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceEC-CCCCEEEEEEcCCCceEEEEEEC-CCC
Confidence            5678899999998876543   35888999887643 3332 1223467899 66777776666653   777787 466


Q ss_pred             eeeeecccccceeEEEEcC
Q psy17243        229 EEHFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       229 ~~~~~~~~~~~v~~~~~~~  247 (392)
                      ....+..|.+.+...+|+|
T Consensus       409 ~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        409 FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CeEECccCCCCcCCcccCC
Confidence            6677778888888889987

>KOG1272|consensus

Probab=99.74  E-value=7.7e-18  Score=139.97  Aligned_cols=243  Identities=16%  Similarity=0.241  Sum_probs=193.1

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      |+..|.|-.+|..++++...+. -...|..+.|..+.+++|++ ....+.||| ..|..++.++. ...|..+.|.|..-
T Consensus       147 gGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~-~~~v~rLeFLPyHf  222 (545)
T KOG1272|consen  147 GGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKR-HIRVARLEFLPYHF  222 (545)
T ss_pred             cCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhh-cCchhhhcccchhh
Confidence            6788999999999999998887 45679999999999988887 467899999 66888888884 45789999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEE
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF  158 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~  158 (392)
                      +|++++..|.++.-|+.+|+++..+   .+.+..++-+|-...+-+|..+|+|.+|...   ....+.....|.++|.++
T Consensus       223 LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~---skePLvKiLcH~g~V~si  299 (545)
T KOG1272|consen  223 LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN---SKEPLVKILCHRGPVSSI  299 (545)
T ss_pred             eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC---CcchHHHHHhcCCCcceE
Confidence            9999999999999999999987655   4577888899999999999999999999886   444444556899999999


Q ss_pred             EEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEE-CCC--Cceeeeecc
Q psy17243        159 TVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD-MET--GGEEHFLAG  235 (392)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd-~~~--~~~~~~~~~  235 (392)
                      ++.++|+|+++.+.|..++|||+++...+..+.. ..+...+++|  +..+|+ .+....|.||. .-.  +.....+..
T Consensus       300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~S--qkglLA-~~~G~~v~iw~d~~~~s~~~~~pYm~  375 (545)
T KOG1272|consen  300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLS--QKGLLA-LSYGDHVQIWKDALKGSGHGETPYMN  375 (545)
T ss_pred             EECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccc--ccccee-eecCCeeeeehhhhcCCCCCCcchhh
Confidence            9999999999999999999999999887777654 4566778887  333444 45667899994 222  111112222


Q ss_pred             c--ccceeEEEEcCCCeEEEEc
Q psy17243        236 H--LGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       236 ~--~~~v~~~~~~~dg~~~~~~  255 (392)
                      |  .++|..+.|.|-..++-.+
T Consensus       376 H~~~~~V~~l~FcP~EDvLGIG  397 (545)
T KOG1272|consen  376 HRCGGPVEDLRFCPYEDVLGIG  397 (545)
T ss_pred             hccCcccccceeccHHHeeecc
Confidence            2  3488888898865555544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.74  E-value=2.6e-14  Score=123.92  Aligned_cols=250  Identities=15%  Similarity=0.124  Sum_probs=166.7

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCE
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      ..+|.|.|.|..+.+.+..+......-..+.|+||++++++++.||.|.++|+.+.+.+.+++.. .....+++++||++
T Consensus        13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~   91 (369)
T PF02239_consen   13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKY   91 (369)
T ss_dssp             GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTE
T ss_pred             cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCE
Confidence            35789999999999999999865544455789999999999999999999999999999999854 45688999999999


Q ss_pred             EEEEe-CCCeEEEEEcCCceeeeeccc----------ceeEEEEeCCCCEEEEe-cCCCcEEEEeCCCCCCCCcceeeec
Q psy17243         83 VVTSD-KAGVIAVWVADNAQLLYSALG----------PSKCLTVTHNMKYIVSG-DGDNSLRIWPTSPQTHKDDERFTVS  150 (392)
Q Consensus        83 l~~~~-~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~  150 (392)
                      ++++. ..+.+.++|.++.+.++....          .+..+..+|....+++. -..+.|.+.|......  .......
T Consensus        92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~--~~~~~i~  169 (369)
T PF02239_consen   92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN--LKVTTIK  169 (369)
T ss_dssp             EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC--EEEEEEE
T ss_pred             EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc--cceeeec
Confidence            98775 679999999999988876542          33466677877755555 4458888888764422  2222234


Q ss_pred             cccceEEEEEEcCCCEEEEe-eCCCcEEEEEcCCCeEEEEEec-------------CC----------------------
Q psy17243        151 HSEEITCFTVTWDSQYLITG-SRDMSLKVWQVVGGKLAQVLVG-------------HT----------------------  194 (392)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-------------~~----------------------  194 (392)
                      .........|+|++++++++ ..+..|.++|.++++.+..+..             |.                      
T Consensus       170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~  249 (369)
T PF02239_consen  170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD  249 (369)
T ss_dssp             --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--
T ss_pred             ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCC
Confidence            45667788999999987775 4466888888887765543210             00                      


Q ss_pred             -------------------CceeEEEEecCCCcEEEEe----cCCCeEEEEECCCCceeeeecccc-cceeEEEEcCCCe
Q psy17243        195 -------------------DHVSCVAVAVTNKSLVVSG----SKDSNLIVWDMETGGEEHFLAGHL-GCVTCVKLAGDGT  250 (392)
Q Consensus       195 -------------------~~v~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~dg~  250 (392)
                                         +.-.-+..+ +++.+++..    ...+.|.++|.++.+.+..+.... ..+..+.|++||+
T Consensus       250 ~v~v~d~~~wkvv~~I~~~G~glFi~th-P~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~  328 (369)
T PF02239_consen  250 PVSVHDDYAWKVVKTIPTQGGGLFIKTH-PDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK  328 (369)
T ss_dssp             TTT-STTTBTSEEEEEE-SSSS--EE---TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS
T ss_pred             ccccchhhcCeEEEEEECCCCcceeecC-CCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC
Confidence                               001223345 456666665    456889999999998777775332 3599999999999


Q ss_pred             EEEEcC
Q psy17243        251 VAMSDL  256 (392)
Q Consensus       251 ~~~~~~  256 (392)
                      .+....
T Consensus       329 ~v~vS~  334 (369)
T PF02239_consen  329 EVWVSV  334 (369)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            776643

...

>KOG0290|consensus

Probab=99.73  E-value=6.4e-16  Score=121.25  Aligned_cols=216  Identities=12%  Similarity=0.199  Sum_probs=160.1

Q ss_pred             CccCCeEEEEECCC--ccc--eeee-----ccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCce---eEEecccc
Q psy17243          2 GGMDCLVNVWQMNS--HEL--QSTM-----EGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSV---VSTFKSHQ   68 (392)
Q Consensus         2 g~~dg~i~vwd~~~--~~~--~~~~-----~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~   68 (392)
                      ++.+-.+|+|.+..  .+.  ...+     ..+.+++++..|+. +-++|.++|-|-+..|||++++..   ..++-.|.
T Consensus       117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD  196 (364)
T KOG0290|consen  117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD  196 (364)
T ss_pred             hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence            34566799999863  221  1112     23678999999998 678999999999999999998743   55677899


Q ss_pred             cceEEEEEecCC-CEEEEEeCCCeEEEEEcCCce---eeeeccc---ceeEEEEeC-CCCEEEEecC-CCcEEEEeCCCC
Q psy17243         69 STILAVAVLSDS-RRVVTSDKAGVIAVWVADNAQ---LLYSALG---PSKCLTVTH-NMKYIVSGDG-DNSLRIWPTSPQ  139 (392)
Q Consensus        69 ~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~---~~~~~~~---~~~~~~~~~-~~~~l~~~~~-d~~i~~~d~~~~  139 (392)
                      .+|..++|...+ ..+++.+.||.++++|++..+   .+++-..   +...++|++ +.+++|+-.. ...|.+.|++..
T Consensus       197 KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P  276 (364)
T KOG0290|consen  197 KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP  276 (364)
T ss_pred             cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC
Confidence            999999999865 478899999999999998764   3443333   345677776 4456666544 467899999843


Q ss_pred             CCCCcceeeeccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCCe------EEEEEecCCCceeEEEEecCCCcEEEE
Q psy17243        140 THKDDERFTVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVGGK------LAQVLVGHTDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~  212 (392)
                      .  ........|...|+.++|.|. ...|++++.|..+.+||+...-      ++..+. -.+.|+.+.|++..+..++.
T Consensus       277 ~--tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai  353 (364)
T KOG0290|consen  277 C--TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAI  353 (364)
T ss_pred             C--cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEE
Confidence            2  233344589999999999996 6789999999999999996532      223333 46789999999888888887


Q ss_pred             ecCCCeEEE
Q psy17243        213 GSKDSNLIV  221 (392)
Q Consensus       213 ~~~dg~i~i  221 (392)
                      +. ++++.+
T Consensus       354 ~~-~kklei  361 (364)
T KOG0290|consen  354 CF-GKKLEI  361 (364)
T ss_pred             Ee-cCeeeE
Confidence            75 444443

>KOG1517|consensus

Probab=99.73  E-value=7.5e-16  Score=140.44  Aligned_cols=228  Identities=17%  Similarity=0.313  Sum_probs=166.4

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccc---ccceEEEEEecC--CCEEEEEeCCCeEEEEEcC---
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH---QSTILAVAVLSD--SRRVVTSDKAGVIAVWVAD---   98 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~---   98 (392)
                      .+-..+.|+|=...++++...-.|+|||.+.++.+..|..+   ...|+.+.+..+  ...+++++.||.|+||+--   
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            35567888887788899887789999999999998887654   356888888653  4589999999999999642   


Q ss_pred             --Cceeeeecc----------cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc-CCC
Q psy17243         99 --NAQLLYSAL----------GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW-DSQ  165 (392)
Q Consensus        99 --~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~  165 (392)
                        +.+++....          +.-.-+.|.....+|++++.-..|+|||.........  ...+....++++.-+. .|+
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d--iP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD--IPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee--cccCCCccceeecccccCCc
Confidence              222222111          1113456777777788888889999999974332222  2224455666665433 379


Q ss_pred             EEEEeeCCCcEEEEEcCCCe---EEEEEecCCCc--eeEEEEecCCCcEEEEecCCCeEEEEECCCCceee--eecccc-
Q psy17243        166 YLITGSRDMSLKVWQVVGGK---LAQVLVGHTDH--VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH--FLAGHL-  237 (392)
Q Consensus       166 ~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-  237 (392)
                      .+++|..||.|++||.+...   .+..++.|+..  |..+.+.+.+-.-|++|+.||.|++||++......  .+..|. 
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred             eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence            99999999999999998653   46677888877  99999985454569999999999999999743222  223333 


Q ss_pred             -c-ceeEEEEcCCCeEEEEcC
Q psy17243        238 -G-CVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       238 -~-~v~~~~~~~dg~~~~~~~  256 (392)
                       + ..+++..+++..+++++.
T Consensus      1303 yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred             cCccceeeeeccCCCeeeecC
Confidence             3 589999999999999975

>KOG0771|consensus

Probab=99.72  E-value=9e-17  Score=132.26  Aligned_cols=180  Identities=21%  Similarity=0.242  Sum_probs=141.2

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc--cccceEEEEEec
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS--HQSTILAVAVLS   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~   78 (392)
                      ||+.||.+|||+..+.+.+.....|.+.|.++.|+|||++|++-+.| ..+||+++++..+.....  .+.....+.|..
T Consensus       161 tgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~  239 (398)
T KOG0771|consen  161 TGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV  239 (398)
T ss_pred             eccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc
Confidence            58899999999999998888888899999999999999999999999 899999999977766552  334567778877


Q ss_pred             CC---CE--EEEEeCCCeEEEEEcCCcee---e-----eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcc
Q psy17243         79 DS---RR--VVTSDKAGVIAVWVADNAQL---L-----YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        79 ~~---~~--l~~~~~d~~i~iwd~~~~~~---~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  145 (392)
                      ++   .+  ++.....+.|+.||+.....   +     ......+.+++++++|++++.|+.||.|.+++..+.+.  ..
T Consensus       240 d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~--~~  317 (398)
T KOG0771|consen  240 DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR--LQ  317 (398)
T ss_pred             cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee--eE
Confidence            76   22  23334445666666542211   1     12234788999999999999999999999999874332  23


Q ss_pred             eeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC
Q psy17243        146 RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                      .....|...|+.+.|+|+.+++++.+.+....+..+.-
T Consensus       318 ~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  318 YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            34457999999999999999999999998888887654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=4.8e-15  Score=132.97  Aligned_cols=232  Identities=18%  Similarity=0.084  Sum_probs=155.7

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC---CeEEEEeCCCCceeEEecccccceEEEEEecCCCE
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED---NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      ..|.+||.. +...+.+..+...+.+.+|+|+++.|+..+.+   ..|.+||+.+++... +....+...+..|+|+|+.
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            468999986 44455666788889999999999999887643   469999998876543 3334445567899999997


Q ss_pred             EE-EEeCCC--eEEEEEcCCceeeeec--ccceeEEEEeCCCCEEEEecC-CCc--EEEEeCCCCCCCCcceeeeccccc
Q psy17243         83 VV-TSDKAG--VIAVWVADNAQLLYSA--LGPSKCLTVTHNMKYIVSGDG-DNS--LRIWPTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        83 l~-~~~~d~--~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~~~  154 (392)
                      |+ +.+.++  .|++||+.+++.....  ........|+|+++.++..+. ++.  |+++++..+..   .... .....
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt-~~g~~  337 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLT-FQGNY  337 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEee-cCCCC
Confidence            75 445555  5999999888654322  223456899999998887764 444  66666653321   1111 12233


Q ss_pred             eEEEEEEcCCCEEEEeeCCC---cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecC---CCeEEEEECCCCc
Q psy17243        155 ITCFTVTWDSQYLITGSRDM---SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK---DSNLIVWDMETGG  228 (392)
Q Consensus       155 v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~  228 (392)
                      ....+|+|+|++|+..+.++   .|.+||+.+++.. .+. +........|+ +++++++..+.   .+.|.++++. +.
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~s-pdG~~i~~~s~~~g~~~L~~~~~~-g~  413 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFA-PNGSMVLYATREGGRGVLAAVSTD-GR  413 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceEC-CCCCEEEEEEecCCceEEEEEECC-CC
Confidence            45689999999988765433   6999999887654 333 22344567899 55655544443   2458888885 44


Q ss_pred             eeeeecccccceeEEEEcC
Q psy17243        229 EEHFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       229 ~~~~~~~~~~~v~~~~~~~  247 (392)
                      ....+..+.+.+...+|+|
T Consensus       414 ~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        414 VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ceEEcccCCCCCCCCccCC
Confidence            5556655666777777876

>KOG1310|consensus

Probab=99.71  E-value=2.3e-16  Score=134.08  Aligned_cols=212  Identities=17%  Similarity=0.281  Sum_probs=155.7

Q ss_pred             ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-ccccceEEEEEecC--CCEEEEEeCCCeEEE
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSD--SRRVVTSDKAGVIAV   94 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i   94 (392)
                      +.+++.||++-|+|++|+.+|.+|++||.|-.+.|||.-..+++..+. +|...|.++.|.|.  .+.+++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            456788999999999999999999999999999999998888777664 79999999999985  568899999999999


Q ss_pred             EEcCCcee-------------eeecccceeEEEEeCCC-CEEEEecCCCcEEEEeCCCCCCCCcce-------eeecccc
Q psy17243         95 WVADNAQL-------------LYSALGPSKCLTVTHNM-KYIVSGDGDNSLRIWPTSPQTHKDDER-------FTVSHSE  153 (392)
Q Consensus        95 wd~~~~~~-------------~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~-------~~~~~~~  153 (392)
                      +|+...+.             ...+...+..++..|++ +.+.++++||.|+-||++.........       .....--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            99985321             11233456678888887 899999999999999998643222111       0111223


Q ss_pred             ceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCC--------e----------EEEEE-ecCC--------C---ceeEEEE
Q psy17243        154 EITCFTVTWD-SQYLITGSRDMSLKVWQVVGG--------K----------LAQVL-VGHT--------D---HVSCVAV  202 (392)
Q Consensus       154 ~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~--------~----------~~~~~-~~~~--------~---~v~~~~~  202 (392)
                      ...|+.++|. ..+|++|+.|-..++||.+..        .          ++..+ .+|.        .   .++-+.|
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            4678889986 568999999999999995321        1          12222 1221        1   1456788


Q ss_pred             ecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        203 AVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       203 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      +|.+..+|++-+ .-.|+++|+..++..
T Consensus       282 npNGtElLvs~~-gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  282 NPNGTELLVSWG-GEHVYLFDVNEDKSP  308 (758)
T ss_pred             CCCCcEEEEeeC-CeEEEEEeecCCCCc
Confidence            966666666654 447999999876543

>KOG3881|consensus

Probab=99.71  E-value=3.2e-15  Score=122.03  Aligned_cols=217  Identities=15%  Similarity=0.191  Sum_probs=164.2

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc----eeEEecccccceEEEEEecCCCEE-EEEeCC--CeEEEEEc
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS----VVSTFKSHQSTILAVAVLSDSRRV-VTSDKA--GVIAVWVA   97 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d--~~i~iwd~   97 (392)
                      ...+|..++.. ++ .|++|-.+|.+.+|..+.+.    .+..+.. ...+..+.-++..+.| ++|+..  ..+.+||+
T Consensus       104 ~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl  180 (412)
T KOG3881|consen  104 GTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDL  180 (412)
T ss_pred             ccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeec
Confidence            34555555544 23 68888899999999988443    2333332 2456666666665555 458888  88999999


Q ss_pred             CCceeeeeccc----------c--eeEEEEeCC--CCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC
Q psy17243         98 DNAQLLYSALG----------P--SKCLTVTHN--MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD  163 (392)
Q Consensus        98 ~~~~~~~~~~~----------~--~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  163 (392)
                      ++.+.+.+...          |  ++.+.|-+.  ...|++++.-+.+++||.+.+  ..++..+.-...+++++...|+
T Consensus       181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--RRPV~~fd~~E~~is~~~l~p~  258 (412)
T KOG3881|consen  181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--RRPVAQFDFLENPISSTGLTPS  258 (412)
T ss_pred             ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc--CcceeEeccccCcceeeeecCC
Confidence            99877665432          2  246777776  789999999999999999843  2333334445789999999999


Q ss_pred             CCEEEEeeCCCcEEEEEcCCCeEEEE-EecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeE
Q psy17243        164 SQYLITGSRDMSLKVWQVVGGKLAQV-LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTC  242 (392)
Q Consensus       164 ~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  242 (392)
                      ++++++|..-|.+..||++.++.... +.+..+.|.++..+ +...++++++-|..|||+|+.+.+++.... -....++
T Consensus       259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~h-p~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~  336 (412)
T KOG3881|consen  259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCH-PTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTF  336 (412)
T ss_pred             CcEEEEecccchhheecccCceeeccccCCccCCcceEEEc-CCCceEEeeccceeEEEeecccchhhhhhh-hhccccE
Confidence            99999999999999999999998766 88889999999999 778899999999999999999977765443 2345666


Q ss_pred             EEEcCC
Q psy17243        243 VKLAGD  248 (392)
Q Consensus       243 ~~~~~d  248 (392)
                      +.+.++
T Consensus       337 il~~~~  342 (412)
T KOG3881|consen  337 ILLRDD  342 (412)
T ss_pred             EEecCC
Confidence            666554

>KOG1272|consensus

Probab=99.71  E-value=3e-17  Score=136.52  Aligned_cols=223  Identities=12%  Similarity=0.098  Sum_probs=186.0

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS  105 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  105 (392)
                      ...-..+.++.+|++|+.|+..|.|-.+|+.++++..++. -...|.++.|..+.++++++ ....++|||-..-+ ++.
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtE-lHC  205 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTE-LHC  205 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcE-Eee
Confidence            3455788999999999999999999999999999999887 46789999998877666655 56789999976544 333


Q ss_pred             cc--cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC
Q psy17243        106 AL--GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       106 ~~--~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                      +.  ..+..+.|-|.--+|++++..|.++.-|+..++....+.   ...+.+..++-+|-+..+-+|...|+|.+|....
T Consensus       206 lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  206 LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             hhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH---ccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence            32  467788999999899999999999999998665544433   3456778888889888999999999999999999


Q ss_pred             CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .+++..+..|.++|.++++. +++.++++.+.|..++|||+++...+.++.. .-+...+++|.-|.+.++-.
T Consensus       283 kePLvKiLcH~g~V~siAv~-~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G  353 (545)
T KOG1272|consen  283 KEPLVKILCHRGPVSSIAVD-RGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYG  353 (545)
T ss_pred             cchHHHHHhcCCCcceEEEC-CCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecC
Confidence            99999999999999999999 8899999999999999999999887776654 45778888888877766643

>KOG0644|consensus

Probab=99.70  E-value=4.7e-17  Score=144.56  Aligned_cols=222  Identities=18%  Similarity=0.313  Sum_probs=166.2

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ||+.|..|+||..++..++....||.+.|+.++.+.+..+++++|.|..|++|.+.++.++..+.+|.+.|++++|+|-.
T Consensus       207 tgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~  286 (1113)
T KOG0644|consen  207 TGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA  286 (1113)
T ss_pred             ecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeee-------cccceeEEEEeCCCC---------------------------------
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYS-------ALGPSKCLTVTHNMK---------------------------------  120 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~---------------------------------  120 (392)
                          +.+.||++++||.+-.-.+..       ...-+..+.+..++.                                 
T Consensus       287 ----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ss  362 (1113)
T KOG0644|consen  287 ----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSS  362 (1113)
T ss_pred             ----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccc
Confidence                778899999999871111100       000111111111222                                 


Q ss_pred             ----EEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCC-CEEEEeeCCCcEEEEEcCCCeEEEEEecCCC
Q psy17243        121 ----YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS-QYLITGSRDMSLKVWQVVGGKLAQVLVGHTD  195 (392)
Q Consensus       121 ----~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  195 (392)
                          +.+++-.+-.+.+|++.++   .......+|...+..+.++|-+ ....+++.||...|||+-.+.+++.+.....
T Consensus       363 d~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~  439 (1113)
T KOG0644|consen  363 DLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG  439 (1113)
T ss_pred             cccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc
Confidence                2222233445566766533   2233345788889999999964 4566788999999999999988776643345


Q ss_pred             ceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        196 HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       196 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      .+...+|+ .++..++....-|.++|.....++..
T Consensus       440 kl~d~kFS-qdgts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  440 KLVDGKFS-QDGTSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             eeeccccC-CCCceEecCCCCCceEEeccCCCccc
Confidence            55666899 67777887788899999887665543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=9.2e-15  Score=130.72  Aligned_cols=235  Identities=15%  Similarity=0.090  Sum_probs=151.8

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC---CeEEEEeCCCCceeEEecccccceEEEEEecCCCE
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED---NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      ..|.++|.. +...+.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|||+.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            467777764 55555666788899999999999998877643   459999999887643 3334455678999999998


Q ss_pred             EE-EEeCCCeEEEE--EcCCceeee--ecccceeEEEEeCCCCEEEEecC-CCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         83 VV-TSDKAGVIAVW--VADNAQLLY--SALGPSKCLTVTHNMKYIVSGDG-DNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        83 l~-~~~~d~~i~iw--d~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      |+ +.+.++...+|  |+..+....  ..........|+|+|+.++..+. ++...+|.+...... ..... .......
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt-~~g~~~~  331 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVT-FTGSYNT  331 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEe-cCCCCcC
Confidence            86 45677776665  454443222  22223456789999998886654 466666655322111 11111 1222334


Q ss_pred             EEEEEcCCCEEEEeeCCC---cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCe--EEEEECCCCceee
Q psy17243        157 CFTVTWDSQYLITGSRDM---SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSN--LIVWDMETGGEEH  231 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~  231 (392)
                      ...|+|+|++|+..+.++   .|.+||+.+++... +.. ........|+|++..++++....|.  +.+.++ +++...
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~  408 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQ  408 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceE
Confidence            578999999998776554   69999998876543 332 2334677899544444444444433  556666 455566


Q ss_pred             eecccccceeEEEEcC
Q psy17243        232 FLAGHLGCVTCVKLAG  247 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~  247 (392)
                      .+..+.+.+...+|+|
T Consensus       409 ~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        409 RLSVQGGDVREPSWGP  424 (427)
T ss_pred             EeecCCCCCCCCccCC
Confidence            6666667777778876

>KOG2321|consensus

Probab=99.69  E-value=2.8e-15  Score=128.21  Aligned_cols=235  Identities=14%  Similarity=0.144  Sum_probs=171.6

Q ss_pred             cCCcCeeEEEecCCCCeE-EEEeCCCeEEEEeCCCCceeEEe----------------------------ccc-------
Q psy17243         24 GHLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLTLGSVVSTF----------------------------KSH-------   67 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~----------------------------~~~-------   67 (392)
                      .|...-+.|..+|||+|+ ++|.+.-.|++||+.+-.+...-                            ..|       
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            377888999999999975 56778889999998754321110                            001       


Q ss_pred             ----ccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCC
Q psy17243         68 ----QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT  140 (392)
Q Consensus        68 ----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  140 (392)
                          +..-..++++.-.--|++++....|+-++++.|+.+..+.   +.++++.+++-..+|++|+.+|.|.+||.+...
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence                0111233333333346666777789999999998876554   577899999999999999999999999998654


Q ss_pred             CCCcceeee---ccc-----cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe-cCCCceeEEEEecCCC-cEE
Q psy17243        141 HKDDERFTV---SHS-----EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV-GHTDHVSCVAVAVTNK-SLV  210 (392)
Q Consensus       141 ~~~~~~~~~---~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~l  210 (392)
                      ....+....   .+.     ..|+++.|+.+|-.+++|..+|.+.|||++..+++..-. +..-+|..+.|.+.++ ..+
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v  288 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV  288 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence            333322211   122     349999999999999999999999999999998876543 3345788899975433 445


Q ss_pred             EEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        211 VSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       211 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      ++ .....++|||-.+|+....+.. ...++.+++-|++-+++.+.+...
T Consensus       289 ~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~  336 (703)
T KOG2321|consen  289 VS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSK  336 (703)
T ss_pred             Ee-cchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCc
Confidence            54 4567899999999999888874 445999999999988888876543

>KOG2111|consensus

Probab=99.69  E-value=3e-14  Score=113.41  Aligned_cols=227  Identities=12%  Similarity=0.160  Sum_probs=156.3

Q ss_pred             CeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEE-EeCC------CeEEEEEcCCc
Q psy17243         28 TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVT-SDKA------GVIAVWVADNA  100 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d------~~i~iwd~~~~  100 (392)
                      ...+++|+.|..-+++|..+| .+||+.+.-+.....+.+.+.+.-+...-..++|+. |+.+      ..+.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            345699999988888887665 999998865443333323322222222223345543 3333      47999997766


Q ss_pred             eeeee--cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEE-eeCCCcEE
Q psy17243        101 QLLYS--ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLIT-GSRDMSLK  177 (392)
Q Consensus       101 ~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~  177 (392)
                      +++.+  +..++..+.+.++  .+++. ..+.|++|.................+....+++-..+..+|+. |-.-|.|+
T Consensus        86 ~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ  162 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ  162 (346)
T ss_pred             cEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence            66654  5568888888776  34443 4578999988643222222222233445555544444455554 44579999


Q ss_pred             EEEcCCCeE--EEEEecCCCceeEEEEecCCCcEEEEecCCCe-EEEEECCCCceeeeecc--cccceeEEEEcCCCeEE
Q psy17243        178 VWQVVGGKL--AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSN-LIVWDMETGGEEHFLAG--HLGCVTCVKLAGDGTVA  252 (392)
Q Consensus       178 i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~dg~~~  252 (392)
                      |-|+...+.  ...+.+|...|.|++.+ .+|.++|++|..|+ |||||..+|+.+.++..  ....|.+|+||||..++
T Consensus       163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L  241 (346)
T KOG2111|consen  163 IVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL  241 (346)
T ss_pred             EEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE
Confidence            999977655  47788999999999999 88999999999998 89999999999998864  34589999999999999


Q ss_pred             EEcCCCC
Q psy17243        253 MSDLPPS  259 (392)
Q Consensus       253 ~~~~~~~  259 (392)
                      +..++.+
T Consensus       242 avsSdKg  248 (346)
T KOG2111|consen  242 AVSSDKG  248 (346)
T ss_pred             EEEcCCC
Confidence            9987653

>KOG4497|consensus

Probab=99.69  E-value=4.2e-14  Score=113.16  Aligned_cols=252  Identities=16%  Similarity=0.141  Sum_probs=174.3

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCe-EEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIF-AVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ...++.|.+|++...+-...+....+++.+++|||+|+. |.+...+-.|.+|.+.+.+.... +..+..+..++|+|+|
T Consensus        67 ~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg  145 (447)
T KOG4497|consen   67 AYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDG  145 (447)
T ss_pred             eeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCC
Confidence            356889999999999888899888999999999999964 55677789999999988665432 3234556888999999


Q ss_pred             CEEEEEeCC------------------------------------CeEEEEEcCCcee--eeecccceeEEEEeCCCCEE
Q psy17243         81 RRVVTSDKA------------------------------------GVIAVWVADNAQL--LYSALGPSKCLTVTHNMKYI  122 (392)
Q Consensus        81 ~~l~~~~~d------------------------------------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~l  122 (392)
                      ++.+.++.-                                    ..+.+||.--.-.  .++....+..+.|+|.++++
T Consensus       146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qfl  225 (447)
T KOG4497|consen  146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFL  225 (447)
T ss_pred             ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceE
Confidence            887766532                                    2233443221111  22222466788999999999


Q ss_pred             EEecCCCcEEEEeCCCC-----------------------------------------------CCC------Cc--cee
Q psy17243        123 VSGDGDNSLRIWPTSPQ-----------------------------------------------THK------DD--ERF  147 (392)
Q Consensus       123 ~~~~~d~~i~~~d~~~~-----------------------------------------------~~~------~~--~~~  147 (392)
                      ++|+.|+.+++.+--+-                                               ...      ..  ...
T Consensus       226 avGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~  305 (447)
T KOG4497|consen  226 AVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKV  305 (447)
T ss_pred             EeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceee
Confidence            99999999887543110                                               000      00  000


Q ss_pred             --------eeccccceEEEEEEcCCCEEEEeeC--CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC
Q psy17243        148 --------TVSHSEEITCFTVTWDSQYLITGSR--DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       148 --------~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                              .......+..++|++|..++++-..  -..+.+||+++.+.-..+. ...+|....|.|...++++ +....
T Consensus       306 ~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~v-ctg~s  383 (447)
T KOG4497|consen  306 HKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVV-CTGKS  383 (447)
T ss_pred             ecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEE-EcCCc
Confidence                    0011334677899999988888654  3679999998877555544 5778999999965555544 44466


Q ss_pred             eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        218 NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      .+++|...-...+ ..+...-.|..+.|.-+|..++...+
T Consensus       384 rLY~W~psg~~~V-~vP~~GF~i~~l~W~~~g~~i~l~~k  422 (447)
T KOG4497|consen  384 RLYFWAPSGPRVV-GVPKKGFNIQKLQWLQPGEFIVLCGK  422 (447)
T ss_pred             eEEEEcCCCceEE-ecCCCCceeeeEEecCCCcEEEEEcC
Confidence            7999987654433 33344468999999999998887653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=4.3e-14  Score=127.06  Aligned_cols=232  Identities=13%  Similarity=0.031  Sum_probs=155.0

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeC---CCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSE---DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      ...|.++|.. +...+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+....|+|||+
T Consensus       181 ~~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        181 IKRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             ceEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence            3478889875 4555667778889999999999998887754   468999999888654 3444666778899999999


Q ss_pred             EEE-EEeCCCe--EEEEEcCCceeeee--cccceeEEEEeCCCCEEEEecC-CC--cEEEEeCCCCCCCCcceeeecccc
Q psy17243         82 RVV-TSDKAGV--IAVWVADNAQLLYS--ALGPSKCLTVTHNMKYIVSGDG-DN--SLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        82 ~l~-~~~~d~~--i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      .|+ +.+.++.  |++||+.+++...-  .........|+|+++.++..+. +|  .|+++|+.....   .... ....
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~---~~lt-~~~~  334 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP---RRIS-FGGG  334 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe---EEee-cCCC
Confidence            875 4455554  77789888765432  2223457899999998887764 33  577778753322   1221 2344


Q ss_pred             ceEEEEEEcCCCEEEEeeCC---CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEE-EecCC-----CeEEEEEC
Q psy17243        154 EITCFTVTWDSQYLITGSRD---MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV-SGSKD-----SNLIVWDM  224 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d-----g~i~iwd~  224 (392)
                      .+....|+|++++|+....+   ..|.+||+..+.. ..+. ....+....|+| +++.|+ +....     ..|.++|+
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEEC
Confidence            56678899999998876643   3688889765443 3333 233467789995 555544 44322     35888888


Q ss_pred             CCCceeeeecccccceeEEEEcC
Q psy17243        225 ETGGEEHFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       225 ~~~~~~~~~~~~~~~v~~~~~~~  247 (392)
                      ..+.. ..+. ..+.+...+|+|
T Consensus       412 ~g~~~-~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        412 TGRNE-REVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCCce-EEcc-CCCCccCcccCC
Confidence            65544 3443 233455666665

>KOG2139|consensus

Probab=99.68  E-value=9.9e-14  Score=112.39  Aligned_cols=230  Identities=13%  Similarity=0.156  Sum_probs=159.8

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-ccccceEEEEEecCCC-EEEEEeCCCeEEEEEcCCcee-
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSDSR-RVVTSDKAGVIAVWVADNAQL-  102 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~-  102 (392)
                      +..+..++|++.-.-++++..|-.|++||-.. .+...++ .....|++++|-|.+. .|++|+..| |.+|.....-. 
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence            34578899999766788999999999999766 5444554 2356799999999764 566666555 89996542210 


Q ss_pred             -------------eeec--ccceeEEEEeCCCCEEEEecC-CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCE
Q psy17243        103 -------------LYSA--LGPSKCLTVTHNMKYIVSGDG-DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY  166 (392)
Q Consensus       103 -------------~~~~--~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (392)
                                   +...  ..+++.+.|++||..+++++. +..|.+||..++......   ....+.+.-+.|+||+.+
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---~~glgg~slLkwSPdgd~  252 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---PKGLGGFSLLKWSPDGDV  252 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---ccCCCceeeEEEcCCCCE
Confidence                         1111  237889999999999998875 689999999866554433   235577889999999999


Q ss_pred             EEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc-------------eeeee
Q psy17243        167 LITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG-------------EEHFL  233 (392)
Q Consensus       167 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~  233 (392)
                      |+++.-|+..++|+...........-..+.|...+|+|.+..+|++.+..-.|+--......             .+..+
T Consensus       253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL  332 (445)
T KOG2139|consen  253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADL  332 (445)
T ss_pred             EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccc
Confidence            99999999999997654433333333456999999997666666666544444332222110             01111


Q ss_pred             c------c---cccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        234 A------G---HLGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       234 ~------~---~~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      .      +   ..+++.+++|.|.|.+++..++...
T Consensus       333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence            1      1   1357889999999999999876543

>KOG2394|consensus

Probab=99.68  E-value=2.5e-15  Score=127.49  Aligned_cols=179  Identities=19%  Similarity=0.256  Sum_probs=123.2

Q ss_pred             CCeEEEEECCCccceeeec----cCCcCeeEEEecCCC-CeEEEEeCCCeEEEEeCCCCceeEEecccccceEE--EEEe
Q psy17243          5 DCLVNVWQMNSHELQSTME----GHLNTVSCVAISPNS-IFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILA--VAVL   77 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~--~~~~   77 (392)
                      -|.|.+.|....+..+.+.    -.+..|+|+.|-|.+ ..++.+-.+|.+.+||.+-          ....+.  ....
T Consensus       194 tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~----------~~~~t~p~~~~~  263 (636)
T KOG2394|consen  194 TGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI----------VCGATAPSYQAL  263 (636)
T ss_pred             cCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc----------cccCCCCccccc
Confidence            3556666654422222111    134789999999944 4566677899999998621          111111  1112


Q ss_pred             cCCCEEEEEeC-----CCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc
Q psy17243         78 SDSRRVVTSDK-----AGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS  152 (392)
Q Consensus        78 ~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  152 (392)
                      +++..+.....     ++-+.-|-        .-.+.+..++|+|||++||+.+.||.++|||..+.......   ..--
T Consensus       264 k~~~~f~i~t~ksk~~rNPv~~w~--------~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m---kSYF  332 (636)
T KOG2394|consen  264 KDGDQFAILTSKSKKTRNPVARWH--------IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM---KSYF  332 (636)
T ss_pred             CCCCeeEEeeeeccccCCccceeE--------eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH---Hhhc
Confidence            33333332211     12222232        22347888999999999999999999999999754333322   2344


Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEec
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAV  204 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  204 (392)
                      +...|++|+|||+||++|++|--|.||.+...+.+..-++|+..|..++|.|
T Consensus       333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            6789999999999999999999999999999999999999999999999984

>KOG1523|consensus

Probab=99.68  E-value=3.5e-15  Score=118.72  Aligned_cols=196  Identities=15%  Similarity=0.090  Sum_probs=156.8

Q ss_pred             ecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCce------eeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCC
Q psy17243         64 FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ------LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTS  137 (392)
Q Consensus        64 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~  137 (392)
                      +.....+|+|.+|++|...++++.....|.||.....+      .+..+...++++.|+|..+.|++++.|..-++|...
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            33356789999999999999999999999999887665      344566788999999999999999999999999985


Q ss_pred             CCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE----EEEEecCCCceeEEEEecCCCcEEEEe
Q psy17243        138 PQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL----AQVLVGHTDHVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~  213 (392)
                      .+..-........++...+++.|+|.++.|++|+....|.||-++...-    .+.-+.+...|+++.|+ +++-+|++|
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh-pnnVLlaaG  164 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH-PNNVLLAAG  164 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc-CCcceeccc
Confidence            4444444455567899999999999999999999999999988765431    12224567889999999 788899999


Q ss_pred             cCCCeEEEEECC-----C-------------CceeeeecccccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        214 SKDSNLIVWDME-----T-------------GGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       214 ~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      +.|+..+|+..-     +             |+++.++....+.|..+.|+|+|..+++-..+..
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~  229 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST  229 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc
Confidence            999999999642     1             1223334345678999999999999999876543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=9.4e-15  Score=130.84  Aligned_cols=198  Identities=13%  Similarity=0.093  Sum_probs=137.4

Q ss_pred             CCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC---CeEEEEEcCCcee--eeecccceeEEEEeCCCCE
Q psy17243         47 DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA---GVIAVWVADNAQL--LYSALGPSKCLTVTHNMKY  121 (392)
Q Consensus        47 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~  121 (392)
                      +..|.+||.+... .+.+..+...+.+..|+|+|+.|+.++.+   ..|++||+.+++.  +....+......|+|+++.
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence            4689999986554 45666688889999999999999887654   4699999988753  4445556668899999998


Q ss_pred             EEEec-CCCcEEEE--eCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCC-eEEEEEecCCCc
Q psy17243        122 IVSGD-GDNSLRIW--PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGG-KLAQVLVGHTDH  196 (392)
Q Consensus       122 l~~~~-~d~~i~~~--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~  196 (392)
                      |+.+. .+|.+.+|  |+....    ......+...+....|+||++.|+..+ .++...||++... .....+ .+.. 
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-  335 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGT----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-  335 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCC----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC-
Confidence            88765 57766665  554322    122234556678899999999776554 5778888876432 222223 3433 


Q ss_pred             eeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        197 VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       197 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                       ....|+ +++..|+..+.++ +.+||+.+++.......+  ....+.|+|||++++...
T Consensus       336 -~~~~~S-pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s  390 (429)
T PRK01742        336 -YSAQIS-ADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS  390 (429)
T ss_pred             -CCccCC-CCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEE
Confidence             457888 5666776666654 566999988754332222  345678999999999875

>KOG1334|consensus

Probab=99.67  E-value=9.7e-16  Score=128.43  Aligned_cols=256  Identities=20%  Similarity=0.248  Sum_probs=196.8

Q ss_pred             CCccCCeEEEEECCCccceeeec-cCCcCeeEEEecCC--CCeEEEEeCCCeEEEEeCCCCce---eEEecccccceEEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTME-GHLNTVSCVAISPN--SIFAVSGSEDNTAKVWGLTLGSV---VSTFKSHQSTILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~   74 (392)
                      +|+.|..|.+||..+++....+. +|...|....|-|.  .+.+++++.||.|++=.+.....   .+.+..|.++|..+
T Consensus       159 SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhkl  238 (559)
T KOG1334|consen  159 SGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKL  238 (559)
T ss_pred             ccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCcccee
Confidence            68999999999999888777764 69999999999984  45799999999999887654332   34556799999999


Q ss_pred             EEecCC-CEEEEEeCCCeEEEEEcCCceeeeec-----cc----ceeEEEEeCCC-CEEEEecCCCcEEEEeCCCCCCCC
Q psy17243         75 AVLSDS-RRVVTSDKAGVIAVWVADNAQLLYSA-----LG----PSKCLTVTHNM-KYIVSGDGDNSLRIWPTSPQTHKD  143 (392)
Q Consensus        75 ~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~----~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~  143 (392)
                      +.-|+. +.|.+++.|+.+.-+|++.......+     ..    ....++.+|.. .++++++.|..+++||.+.-....
T Consensus       239 av~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~  318 (559)
T KOG1334|consen  239 AVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE  318 (559)
T ss_pred             eecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc
Confidence            999876 46889999999999999876442211     11    33578888855 489999999999999987433221


Q ss_pred             c---------ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC--C----------eEEEE-EecCCC--ceeE
Q psy17243        144 D---------ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG--G----------KLAQV-LVGHTD--HVSC  199 (392)
Q Consensus       144 ~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~----------~~~~~-~~~~~~--~v~~  199 (392)
                      .         ........-.|++++|+.++.-|++.-.|-.|++|.-..  +          ..++. +++|..  .|..
T Consensus       319 ~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKg  398 (559)
T KOG1334|consen  319 NNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKG  398 (559)
T ss_pred             ccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccce
Confidence            1         111113456789999998877777777888899995432  2          12233 677754  5788


Q ss_pred             EEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        200 VAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       200 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +-|--|...++++|+.-|.|.||+-.+++.++.+.+....|+|+.-+|--.+|++..
T Consensus       399 VNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG  455 (559)
T KOG1334|consen  399 VNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG  455 (559)
T ss_pred             eeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC
Confidence            888767899999999999999999999999999988777999999999877777754

>KOG2111|consensus

Probab=99.66  E-value=7.6e-14  Score=111.17  Aligned_cols=219  Identities=17%  Similarity=0.247  Sum_probs=153.8

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEE-EEeCC------CeEEEEeCCCCceeEEecccccceEEEEE
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAV-SGSED------NTAKVWGLTLGSVVSTFKSHQSTILAVAV   76 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~d------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~   76 (392)
                      .|.-.+||+.+..+.....+.+...+.-+..--..++|+ .|+.+      ..|.|||-...+++.++. ...+|.++.+
T Consensus        24 ~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l  102 (346)
T KOG2111|consen   24 TDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKL  102 (346)
T ss_pred             ecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEE
Confidence            445588898876555443333333322222222233444 34333      579999977778888887 6889999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcC-Cceeeeeccc---ceeEEEEeC--CCCEEEE-ecCCCcEEEEeCCCCCCCCcceeee
Q psy17243         77 LSDSRRVVTSDKAGVIAVWVAD-NAQLLYSALG---PSKCLTVTH--NMKYIVS-GDGDNSLRIWPTSPQTHKDDERFTV  149 (392)
Q Consensus        77 ~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~---~~~~~~~~~--~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~  149 (392)
                      .++  .|++. ..+.|++|... +.+.++.+..   |-.-.++.|  +..+|+. |..-|.|.+-|+...... ......
T Consensus       103 ~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-~p~~I~  178 (346)
T KOG2111|consen  103 RRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-APSIIN  178 (346)
T ss_pred             cCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC-CceEEE
Confidence            765  45554 36779999887 4555544432   222233333  3334444 445799999999754332 235566


Q ss_pred             ccccceEEEEEEcCCCEEEEeeCCCc-EEEEEcCCCeEEEEEecC--CCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        150 SHSEEITCFTVTWDSQYLITGSRDMS-LKVWQVVGGKLAQVLVGH--TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      +|...|.|++++.+|.++++++..|+ |+|||..+++.+..++.-  ...|.+++|+ ++..+|+++|..|+|+|+.++.
T Consensus       179 AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS-p~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  179 AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS-PNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC-CCccEEEEEcCCCeEEEEEeec
Confidence            99999999999999999999999887 799999999999988643  3579999999 7899999999999999999875


Q ss_pred             Cc
Q psy17243        227 GG  228 (392)
Q Consensus       227 ~~  228 (392)
                      ..
T Consensus       258 ~~  259 (346)
T KOG2111|consen  258 TE  259 (346)
T ss_pred             CC
Confidence            43

>KOG2394|consensus

Probab=99.65  E-value=7e-15  Score=124.83  Aligned_cols=197  Identities=16%  Similarity=0.203  Sum_probs=142.8

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCceeEEec----ccccceEEEEEecCCC-EEEEEeCCCeEEEEEcCCceeeeecccce
Q psy17243         36 PNSIFAVSGSEDNTAKVWGLTLGSVVSTFK----SHQSTILAVAVLSDSR-RVVTSDKAGVIAVWVADNAQLLYSALGPS  110 (392)
Q Consensus        36 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  110 (392)
                      |.+--|+.|-.-|.|.+.|....+..+.+.    ..+..|+++.|.|.+. .++++-.+|.+++||.+..     .....
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----~~~t~  257 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----CGATA  257 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----ccCCC
Confidence            345557777778889998876532222111    1347899999998654 6667788999999987211     11111


Q ss_pred             eEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEE
Q psy17243        111 KCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL  190 (392)
Q Consensus       111 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  190 (392)
                      .+....+++..+......+..       . ........ .....|+.++|+|||++|++.+.||.++|||..+.+.+..+
T Consensus       258 p~~~~~k~~~~f~i~t~ksk~-------~-rNPv~~w~-~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m  328 (636)
T KOG2394|consen  258 PSYQALKDGDQFAILTSKSKK-------T-RNPVARWH-IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM  328 (636)
T ss_pred             CcccccCCCCeeEEeeeeccc-------c-CCccceeE-eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH
Confidence            222333455555443321110       0 01111122 23458999999999999999999999999999998887777


Q ss_pred             ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcC
Q psy17243        191 VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       191 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  247 (392)
                      +..-+...|++|+ +++++|++|++|--|.||.+...+.+..-++|...|..++|.|
T Consensus       329 kSYFGGLLCvcWS-PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  329 KSYFGGLLCVCWS-PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HhhccceEEEEEc-CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            7667889999999 8999999999999999999999999999999999999999997

>KOG2139|consensus

Probab=99.64  E-value=5.3e-14  Score=113.96  Aligned_cols=186  Identities=13%  Similarity=0.169  Sum_probs=136.7

Q ss_pred             ccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee---eeecccceeEEEEeCCC-CEEEEecCCCcEEEEeCCCCCCCC
Q psy17243         68 QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL---LYSALGPSKCLTVTHNM-KYIVSGDGDNSLRIWPTSPQTHKD  143 (392)
Q Consensus        68 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~  143 (392)
                      +..+..++|++.-..++++..|-.|++||-.....   .......++|++|-|.+ ..|++|+.. .|.+|.........
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~  176 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN  176 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence            34578899999878899999999999999877322   22334578999999955 466666664 47799765321111


Q ss_pred             c----------ceeeeccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEE
Q psy17243        144 D----------ERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       144 ~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  212 (392)
                      .          .........+|+++.|.+||..+++++. +..|.|||..++..+.......+.++-+.|+ |++.+|++
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-Pdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-PDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-CCCCEEEE
Confidence            1          1112233478999999999999998875 6789999999988766554456788899999 67788888


Q ss_pred             ecCCCeEEEEECCC-CceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        213 GSKDSNLIVWDMET-GGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       213 ~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +.-|+..++|+... .....-.. -.+.|...+|+|+|+.++...
T Consensus       256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEE
Confidence            89999999996543 33333332 345999999999999888764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.64  E-value=6.6e-14  Score=121.40  Aligned_cols=203  Identities=10%  Similarity=0.084  Sum_probs=136.1

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc--ceeEEEEeCC
Q psy17243         41 AVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG--PSKCLTVTHN  118 (392)
Q Consensus        41 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~  118 (392)
                      +++-..++.|.+.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+.+.+...  ....++++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D   88 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD   88 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence            34566789999999999999999986555445678999999999999999999999999998877654  5578999999


Q ss_pred             CCEEEEec-CCCcEEEEeCCCCCCCCcceeee----ccccceEEEEEEcCCCEEEEe-eCCCcEEEEEcCCCeEEE-EEe
Q psy17243        119 MKYIVSGD-GDNSLRIWPTSPQTHKDDERFTV----SHSEEITCFTVTWDSQYLITG-SRDMSLKVWQVVGGKLAQ-VLV  191 (392)
Q Consensus       119 ~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~-~~~  191 (392)
                      |+++++++ ..+.+.++|.++.+.........    .....+..+..+|....++.. -+.+.|.+.|....+.+. ...
T Consensus        89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i  168 (369)
T PF02239_consen   89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI  168 (369)
T ss_dssp             TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred             CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence            99998775 58999999997544333222211    123467778788887755544 445888888987664332 222


Q ss_pred             cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec----ccccceeEE
Q psy17243        192 GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA----GHLGCVTCV  243 (392)
Q Consensus       192 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~  243 (392)
                      .-........|+|....++++...++.|-++|..+++.+..+.    .|..+...+
T Consensus       169 ~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~  224 (369)
T PF02239_consen  169 KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF  224 (369)
T ss_dssp             E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE
T ss_pred             cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc
Confidence            2345567789995444555666778899999999988776543    244444444

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.62  E-value=1.9e-13  Score=107.72  Aligned_cols=154  Identities=14%  Similarity=0.239  Sum_probs=108.2

Q ss_pred             eEEEecCCCCeEEEEeC----------CCeEEEEeCC-CCceeEEecc-cccceEEEEEecCCCEEEEE--eCCCeEEEE
Q psy17243         30 SCVAISPNSIFAVSGSE----------DNTAKVWGLT-LGSVVSTFKS-HQSTILAVAVLSDSRRVVTS--DKAGVIAVW   95 (392)
Q Consensus        30 ~~~~~~~~~~~l~~~~~----------dg~v~iwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~i~iw   95 (392)
                      ..+.|+|+|.+|+.-..          -+...+|.++ .+.....+.. ..++|.+++|+|+++.+++.  ..++.+.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46889999987765332          2445666553 2234444433 34579999999999987654  456799999


Q ss_pred             EcCCceeeeec-ccceeEEEEeCCCCEEEEecC---CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee
Q psy17243         96 VADNAQLLYSA-LGPSKCLTVTHNMKYIVSGDG---DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS  171 (392)
Q Consensus        96 d~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  171 (392)
                      |++ ++.+..+ ..+.+.+.|+|+|+++++++.   .|.|.+||.+..+.   +.  ......++.++|+|+|++|+++.
T Consensus        89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~---i~--~~~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen   89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK---IS--TFEHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE---ee--ccccCcEEEEEEcCCCCEEEEEE
Confidence            997 4444444 457789999999999999864   46799999973222   11  12334578999999999999987


Q ss_pred             C------CCcEEEEEcCCCeEEEEE
Q psy17243        172 R------DMSLKVWQVVGGKLAQVL  190 (392)
Q Consensus       172 ~------dg~i~i~d~~~~~~~~~~  190 (392)
                      .      |..++||+.. |+.+...
T Consensus       163 t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  163 TSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             eccceeccccEEEEEec-CeEeEec
Confidence            4      6788999974 6655443

>KOG4497|consensus

Probab=99.60  E-value=2.5e-13  Score=108.82  Aligned_cols=245  Identities=13%  Similarity=0.149  Sum_probs=170.9

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEE-EeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEE
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVS-GSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV   83 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   83 (392)
                      +-.+.|-|.++.++.+.+. .-..|.-+.|..+..++++ ...++.|.+|++...+-...+.....++.++.|+|+|+.|
T Consensus        28 ~yrlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhi  106 (447)
T KOG4497|consen   28 RYRLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHI  106 (447)
T ss_pred             eeEEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceE
Confidence            3456677777777766655 3567888999998876665 4678899999999999999999889999999999999655


Q ss_pred             -EEEeCCCeEEEEEcCCceee--eecccceeEEEEeCCCCEEEEecCC--------------------------------
Q psy17243         84 -VTSDKAGVIAVWVADNAQLL--YSALGPSKCLTVTHNMKYIVSGDGD--------------------------------  128 (392)
Q Consensus        84 -~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d--------------------------------  128 (392)
                       .+...+-.|.+|.+.+.+..  ...+..+..++|+|+|++.+..+.-                                
T Consensus       107 L~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW  186 (447)
T KOG4497|consen  107 LLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW  186 (447)
T ss_pred             eeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence             55667889999999887653  3344456788888888887665531                                


Q ss_pred             ----CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEE----------------
Q psy17243        129 ----NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQ----------------  188 (392)
Q Consensus       129 ----~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------  188 (392)
                          ..+.+||--    ...........-.+..++|+|.+++|++|+.|+.+++.+--+.++..                
T Consensus       187 sPdg~~laVwd~~----Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~  262 (447)
T KOG4497|consen  187 SPDGNWLAVWDNV----LEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLL  262 (447)
T ss_pred             CCCCcEEEEecch----hhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhh
Confidence                234445431    11111122334678889999999999999999988875432211100                


Q ss_pred             --------------------------------------------EEe------cCCCceeEEEEecCCCcEEEEecC--C
Q psy17243        189 --------------------------------------------VLV------GHTDHVSCVAVAVTNKSLVVSGSK--D  216 (392)
Q Consensus       189 --------------------------------------------~~~------~~~~~v~~~~~~~~~~~~l~~~~~--d  216 (392)
                                                                  .++      .....+..++|+ .+..++++-..  -
T Consensus       263 ~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs-~Ds~y~aTrnd~~P  341 (447)
T KOG4497|consen  263 EKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS-CDSTYAATRNDKYP  341 (447)
T ss_pred             hhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec-CCceEEeeecCCCC
Confidence                                                        011      112345668888 67777776543  2


Q ss_pred             CeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        217 SNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       217 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +.+-+||+++.+.-..+ ....+|....|.|....++...
T Consensus       342 nalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vct  380 (447)
T KOG4497|consen  342 NALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCT  380 (447)
T ss_pred             ceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEc
Confidence            56999999876654444 3667999999999877666654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.59  E-value=1.2e-11  Score=104.93  Aligned_cols=243  Identities=9%  Similarity=0.024  Sum_probs=159.6

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeC----------CCeEEEEeCCCCceeEEeccccc-----
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSE----------DNTAKVWGLTLGSVVSTFKSHQS-----   69 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~-----   69 (392)
                      .++|.|.|..+++.+..+..-..+-. + ++||++.|+.+..          +..|.+||..+.+.+.++.....     
T Consensus        26 ~~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        26 TTQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             CceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            38999999999999988875444433 4 9999998877655          78999999999999988874222     


Q ss_pred             --ceEEEEEecCCCEEEEEe-C-CCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcc
Q psy17243         70 --TILAVAVLSDSRRVVTSD-K-AGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        70 --~v~~~~~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  145 (392)
                        .-..++++|||++|++.. . +..|.+.|+.+++.+.+..-+.....+......+.+-+.||......+.........
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence              234789999999999876 3 689999999999998877654422222111111223334555444333322111110


Q ss_pred             e--eeec-----cccceEEEEEEc-CCCEEEEeeCCCcEEEEEcCCC-----eEEEEEec-------CCCceeEEEEecC
Q psy17243        146 R--FTVS-----HSEEITCFTVTW-DSQYLITGSRDMSLKVWQVVGG-----KLAQVLVG-------HTDHVSCVAVAVT  205 (392)
Q Consensus       146 ~--~~~~-----~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~-------~~~~v~~~~~~~~  205 (392)
                      .  ....     ...+    .|.+ +++++++..+ |.|.+.|+...     +....+..       ..+...-++++++
T Consensus       184 ~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d  258 (352)
T TIGR02658       184 PTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA  258 (352)
T ss_pred             eeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence            0  1001     0122    3455 7888888776 99999996443     22222211       2233445899965


Q ss_pred             CCcEEEEec---------CCCeEEEEECCCCceeeeecccccceeEEEEcCCCe-EEEEc
Q psy17243        206 NKSLVVSGS---------KDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT-VAMSD  255 (392)
Q Consensus       206 ~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~-~~~~~  255 (392)
                      ++.+++...         ..+.|.++|..+++.+..+.. ...+..++++|||+ +++..
T Consensus       259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvt  317 (352)
T TIGR02658       259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYAL  317 (352)
T ss_pred             CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEe
Confidence            555555332         225899999999999988874 45889999999999 66554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.59  E-value=1.5e-12  Score=117.22  Aligned_cols=231  Identities=17%  Similarity=0.053  Sum_probs=148.9

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC---CeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED---NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      ...|.++|... ...+.+..+...+...+|+|+|++|+.++.+   ..|++||+.+++..... .+...+.+++|+|+++
T Consensus       169 ~~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       169 RYELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGMNGAPAFSPDGS  246 (417)
T ss_pred             cceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCCccceEECCCCC
Confidence            34688888754 4455566677789999999999999887654   47999999988654333 3556677899999999


Q ss_pred             EEEEE-eCCC--eEEEEEcCCceeeee--cccceeEEEEeCCCCEEEEecC-CC--cEEEEeCCCCCCCCcceeeecccc
Q psy17243         82 RVVTS-DKAG--VIAVWVADNAQLLYS--ALGPSKCLTVTHNMKYIVSGDG-DN--SLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        82 ~l~~~-~~d~--~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      .|+.. +.++  .|++||+.+++....  .........|+|+++.|+..+. .+  .|+++|+.....    .....+..
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~----~~l~~~~~  322 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV----RRLTFRGG  322 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeecCCC
Confidence            77654 4444  588899987754332  2223346789999998876654 33  577777753321    11222345


Q ss_pred             ceEEEEEEcCCCEEEEeeCCC---cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCC-C--eEEEEECCCC
Q psy17243        154 EITCFTVTWDSQYLITGSRDM---SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKD-S--NLIVWDMETG  227 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~  227 (392)
                      ......|+|++++++.+..++   .|.+||+.++.. ..+... .......|+| ++.+|+..+.+ +  .+.+.+.. +
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~~-g  398 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAP-NGRMILYATTRGGRGVLGLVSTD-G  398 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECC-CCCEEEEEEeCCCcEEEEEEECC-C
Confidence            567788999999999888765   799999887643 333322 2334567884 55555544443 2  35555543 4


Q ss_pred             ceeeeecccccceeEEEE
Q psy17243        228 GEEHFLAGHLGCVTCVKL  245 (392)
Q Consensus       228 ~~~~~~~~~~~~v~~~~~  245 (392)
                      +....+..+.+.+..++|
T Consensus       399 ~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       399 RFRARLPLGNGDVREPAW  416 (417)
T ss_pred             ceeeECCCCCCCcCCCCC
Confidence            444555444444444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1240|consensus

Probab=99.58  E-value=4.1e-13  Score=124.76  Aligned_cols=227  Identities=15%  Similarity=0.191  Sum_probs=158.0

Q ss_pred             CCccCCeEEEEECCCcc-------ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc-------eeEEecc
Q psy17243          1 MGGMDCLVNVWQMNSHE-------LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS-------VVSTFKS   66 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~   66 (392)
                      ||+.||+|++|+...-.       ...++.--...+.++...+++..+|.++.||.|.+.+++...       +......
T Consensus      1066 sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~ 1145 (1431)
T KOG1240|consen 1066 SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNL 1145 (1431)
T ss_pred             EecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccc
Confidence            68999999999985421       222333356789999999999999999999999999987621       1111111


Q ss_pred             c-ccceEE-EEEecC-C-CEEEEEeCCCeEEEEEcCCceeeeec-----ccceeEEEEeCCCCEEEEecCCCcEEEEeCC
Q psy17243         67 H-QSTILA-VAVLSD-S-RRVVTSDKAGVIAVWVADNAQLLYSA-----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTS  137 (392)
Q Consensus        67 ~-~~~v~~-~~~~~~-~-~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~  137 (392)
                      + .+.+.+ -+|... . ..++.+...+.|..||++........     .+.+++++.+|.+++++.|+..|.+.+||++
T Consensus      1146 ~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1146 KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred             cCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEee
Confidence            2 233333 344332 2 36788888999999999987655443     3578899999999999999999999999998


Q ss_pred             CCCCCCcceeeeccccceEEEEEEcCC---CEEEEee--CCCcEEEEEcCCCeEEEEEecC-----------------CC
Q psy17243        138 PQTHKDDERFTVSHSEEITCFTVTWDS---QYLITGS--RDMSLKVWQVVGGKLAQVLVGH-----------------TD  195 (392)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~-----------------~~  195 (392)
                      -.....  .....+..+++.+..+|-.   ...++++  ..+.|.+|++.++.+...+...                 ..
T Consensus      1226 F~~~i~--sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~ 1303 (1431)
T KOG1240|consen 1226 FRVPIL--SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPD 1303 (1431)
T ss_pred             cCceee--cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCC
Confidence            543332  2333556778888777642   3444444  4788999999998665555322                 01


Q ss_pred             --ceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        196 --HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       196 --~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                        ......+. ..+.++++|+.|..|+.||....+..
T Consensus      1304 ~~~~~~~~~~-~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1304 SLAGISCGVC-EKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             cccceeeecc-cCCceeeecCCccceeeccCCCcccc
Confidence              11122333 45778999999999999999876644

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=6.4e-13  Score=119.37  Aligned_cols=200  Identities=14%  Similarity=0.033  Sum_probs=134.3

Q ss_pred             CeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC---CeEEEEEcCCceee--eecccceeEEEEeCCCCEE
Q psy17243         48 NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA---GVIAVWVADNAQLL--YSALGPSKCLTVTHNMKYI  122 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~l  122 (392)
                      ..|.+||... ...+.+..+...+.+.+|+|+++.|+..+..   ..|++||+.+++..  ....+......|+|+++.+
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence            4689999754 4445555677889999999999999887643   46999999887653  2344455578999999987


Q ss_pred             EE-ecCCC--cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-CCc--EEEEEcCCCeEEEEEecCCCc
Q psy17243        123 VS-GDGDN--SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DMS--LKVWQVVGGKLAQVLVGHTDH  196 (392)
Q Consensus       123 ~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~  196 (392)
                      +. .+.++  .|++||+.++...    ....+.......+|+||+++|+..+. +|.  |+++|+.+++... +..+...
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~  337 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNY  337 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCC
Confidence            64 34444  5899998754321    12233344567899999998887664 444  7777776665433 3223334


Q ss_pred             eeEEEEecCCCcEEEEec-CCC--eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        197 VSCVAVAVTNKSLVVSGS-KDS--NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       197 v~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ....+|+ ++++.++..+ .++  .|.+||+.+++.. .+. +........|+|||+.++...
T Consensus       338 ~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s  397 (433)
T PRK04922        338 NARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYAT  397 (433)
T ss_pred             ccCEEEC-CCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEE
Confidence            4568999 4555555443 332  6999999887754 333 223455679999999888754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.58  E-value=7.4e-11  Score=102.67  Aligned_cols=250  Identities=14%  Similarity=0.173  Sum_probs=163.6

Q ss_pred             CCeEEEEEC--CCccce--eeeccCCcCeeEEEecCCCCeEEEEeC----CCeEEEEeCCCC--c--eeEEecccccceE
Q psy17243          5 DCLVNVWQM--NSHELQ--STMEGHLNTVSCVAISPNSIFAVSGSE----DNTAKVWGLTLG--S--VVSTFKSHQSTIL   72 (392)
Q Consensus         5 dg~i~vwd~--~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~--~--~~~~~~~~~~~v~   72 (392)
                      .+.|.+|++  +++++.  ..+. -......++++|++++|++...    ++.|..|++...  +  .+.+.........
T Consensus        12 ~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~   90 (345)
T PF10282_consen   12 GGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC   90 (345)
T ss_dssp             STEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred             CCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence            378999988  444433  2222 3445678999999999988866    578999988764  3  2333332344556


Q ss_pred             EEEEecCCCEEEEEe-CCCeEEEEEcCC-ceeeee----------------cccceeEEEEeCCCCEEEEecC-CCcEEE
Q psy17243         73 AVAVLSDSRRVVTSD-KAGVIAVWVADN-AQLLYS----------------ALGPSKCLTVTHNMKYIVSGDG-DNSLRI  133 (392)
Q Consensus        73 ~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~-d~~i~~  133 (392)
                      .++++|++++|+++. .+|.+.++++.. +.....                ...+..++.++|+++++++... ...|.+
T Consensus        91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV  170 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence            799999999998886 589999999987 332111                1124568999999998887654 568999


Q ss_pred             EeCCCCCCC--CcceeeeccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcC--CCe--EEEEEecC------CCceeEE
Q psy17243        134 WPTSPQTHK--DDERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVV--GGK--LAQVLVGH------TDHVSCV  200 (392)
Q Consensus       134 ~d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~--~~~~~~~~------~~~v~~~  200 (392)
                      |++......  .............+.+.|+|+++++++..+ ++.|.+|++.  +++  .+..+...      ......+
T Consensus       171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  250 (345)
T PF10282_consen  171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI  250 (345)
T ss_dssp             EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred             EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence            999754421  112223355677899999999998877665 7889999998  443  22222211      1256789


Q ss_pred             EEecCCCcEE-EEecCCCeEEEEECC--CCce--eeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        201 AVAVTNKSLV-VSGSKDSNLIVWDME--TGGE--EHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       201 ~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~--~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +++| ++++| ++....+.|.+|+++  +++.  +..+.......+.++++|+|++++.+.
T Consensus       251 ~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~  310 (345)
T PF10282_consen  251 AISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN  310 (345)
T ss_dssp             EE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE
T ss_pred             EEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence            9994 55554 555567889999994  2332  333433344578999999999998764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=7.7e-13  Score=118.43  Aligned_cols=202  Identities=13%  Similarity=0.073  Sum_probs=131.9

Q ss_pred             CeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC---CeEEEEEcCCceeee--ecccceeEEEEeCCCCEE
Q psy17243         48 NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA---GVIAVWVADNAQLLY--SALGPSKCLTVTHNMKYI  122 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~l  122 (392)
                      ..|.++|.+ +.....+..+...+.+.+|+||++.|+..+..   ..|.+||+.+++...  ...+......|+|+++.|
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            467777764 44445555677889999999999998877643   459999999886533  344566788999999988


Q ss_pred             EE-ecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-CCcEEEEEc--CCCeEEEEEecCCCcee
Q psy17243        123 VS-GDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQV--VGGKLAQVLVGHTDHVS  198 (392)
Q Consensus       123 ~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~v~  198 (392)
                      +. .+.++...+|.+..... . ......+........|+|||+.|+..+. ++...+|.+  .+++.. .+..+.....
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~-~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~  331 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGS-G-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNT  331 (427)
T ss_pred             EEEEccCCCceEEEEECCCC-C-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcC
Confidence            75 56677766665432111 1 1122233444567789999998876554 455566654  444432 2222233344


Q ss_pred             EEEEecCCCcEEEEecCCC---eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        199 CVAVAVTNKSLVVSGSKDS---NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       199 ~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ...|+ +++++|+..+.++   .|.+||+.+++... +.. ........|+|||+.++...
T Consensus       332 ~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        332 SPRIS-PDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYAT  389 (427)
T ss_pred             ceEEC-CCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEE
Confidence            67899 5666666555443   69999998877543 322 23346789999999988864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2.9e-12  Score=114.62  Aligned_cols=200  Identities=14%  Similarity=0.058  Sum_probs=134.3

Q ss_pred             CeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeC---CCeEEEEEcCCcee--eeecccceeEEEEeCCCCEE
Q psy17243         48 NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK---AGVIAVWVADNAQL--LYSALGPSKCLTVTHNMKYI  122 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~l  122 (392)
                      ..|.++|.+.... +.+..+...+...+|+|||+.|+..+.   +..+.+|++.+++.  +....+......|+|+|+.|
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence            3688999875544 334446778999999999999887542   45799999988754  33455566678999999988


Q ss_pred             EEe-cCCC--cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC-C--cEEEEEcCCCeEEEEEecCCCc
Q psy17243        123 VSG-DGDN--SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-M--SLKVWQVVGGKLAQVLVGHTDH  196 (392)
Q Consensus       123 ~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~  196 (392)
                      +.. ..++  .|++||+.++...    ....+...+....|+||++.|+..+.+ +  .|+++|+.+++. ..+..+...
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~  332 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQ  332 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCC
Confidence            865 3344  5888998754321    222334467788999999988776653 4  455557666644 333334445


Q ss_pred             eeEEEEecCCCcEEEEec-CC--CeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        197 VSCVAVAVTNKSLVVSGS-KD--SNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       197 v~~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .....|+ +++.+|+..+ .+  ..|.+||+.+++.. .+.. ........|+|||+.++...
T Consensus       333 ~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s  392 (429)
T PRK03629        333 NQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSS  392 (429)
T ss_pred             ccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEE
Confidence            5678899 5555555443 33  35888999887643 3332 12345678999999998865

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=2.3e-12  Score=115.90  Aligned_cols=200  Identities=13%  Similarity=0.017  Sum_probs=136.4

Q ss_pred             CeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeC---CCeEEEEEcCCcee--eeecccceeEEEEeCCCCEE
Q psy17243         48 NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK---AGVIAVWVADNAQL--LYSALGPSKCLTVTHNMKYI  122 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~l  122 (392)
                      ..|.++|.+ +...+.+..+...+.+..|+|||+.|+..+.   +..|++||+.+++.  +....+.+....|+|+|+.|
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence            378899975 4444566668889999999999999887763   46899999988765  33445566788999999987


Q ss_pred             EE-ecCCCc--EEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-C--CcEEEEEcCCCeEEEEEecCCCc
Q psy17243        123 VS-GDGDNS--LRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-D--MSLKVWQVVGGKLAQVLVGHTDH  196 (392)
Q Consensus       123 ~~-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~  196 (392)
                      +. .+.++.  |++||+.++..    .....+........|+||++.|+..+. +  ..|+++|+..++.. .+..+...
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~----~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~  335 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT----TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGR  335 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce----EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCc
Confidence            64 444554  77778764432    122234445667899999998887664 3  36888898766543 34334555


Q ss_pred             eeEEEEecCCCcEEEEecC-C--CeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        197 VSCVAVAVTNKSLVVSGSK-D--SNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       197 v~~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +....|+| +++.|+..+. .  ..|.+||+..+.. ..+. ....+..+.|+|||+.++...
T Consensus       336 ~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        336 YSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             ccCeEECC-CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEE
Confidence            66788994 5555554433 2  3688889865543 3332 223567889999999888754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=2.6e-12  Score=115.37  Aligned_cols=232  Identities=14%  Similarity=0.037  Sum_probs=146.4

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC---CeEEEEeCCCCceeEEecccccceEEEEEecCCCEE
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED---NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV   83 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   83 (392)
                      .|.++|..... .+.+..+...+.+..|+|||+.|+..+.+   ..|.+||+.+++... +....+......|+||++.|
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            56677765443 34555677889999999999988876543   358889998876533 22223344578999999988


Q ss_pred             EE-EeCCCe--EEEEEcCCceeeeec--ccceeEEEEeCCCCEEEEecC-CC--cEEEEeCCCCCCCCcceeeeccccce
Q psy17243         84 VT-SDKAGV--IAVWVADNAQLLYSA--LGPSKCLTVTHNMKYIVSGDG-DN--SLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        84 ~~-~~~d~~--i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      +. .+.++.  |+++|+.+++.....  ........|+|+++.++..+. ++  .|.++|+.+++.   .... ......
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt-~~g~~~  352 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLT-FEGEQN  352 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEe-cCCCCC
Confidence            65 455664  778898877654322  223456889999998876654 34  456666654322   1111 112223


Q ss_pred             EEEEEEcCCCEEEEeeC-CC--cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCe--EEEEECCCCcee
Q psy17243        156 TCFTVTWDSQYLITGSR-DM--SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSN--LIVWDMETGGEE  230 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~  230 (392)
                      ...+|+||+++|+..+. ++  .|.++|+.+++.. .+... .......|+|++..++++...++.  +.+++. +++..
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~  429 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFK  429 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCce
Confidence            45689999998877654 33  4666788777643 23222 122244799555555555555554  777786 46666


Q ss_pred             eeecccccceeEEEEcC
Q psy17243        231 HFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~~  247 (392)
                      ..+..+.+.+...+|+|
T Consensus       430 ~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        430 ARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EECcCCCCCcCCCccCC
Confidence            66766666777778876

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=4.2e-12  Score=114.46  Aligned_cols=232  Identities=14%  Similarity=0.026  Sum_probs=147.0

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC---CeEEEEeCCCCceeEEecccccceEEEEEecCCCEE
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED---NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV   83 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   83 (392)
                      .|.++|...+. .+.+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++... +....+.+....|+|+|+.|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            47777876544 45565677889999999999998876544   369999998886543 33234455678999999988


Q ss_pred             EE-EeCCC--eEEEEEcCCceeeee--cccceeEEEEeCCCCEEEEecC-CC--cEEEEeCCCCCCCCcceeeeccccce
Q psy17243         84 VT-SDKAG--VIAVWVADNAQLLYS--ALGPSKCLTVTHNMKYIVSGDG-DN--SLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        84 ~~-~~~d~--~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      +. ...++  .|+++|+.+++...-  .........|+|+++.++..+. ++  .|+++++..+...   .... .....
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~lt~-~~~~~  333 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RVTF-VGNYN  333 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Eeec-CCCCc
Confidence            74 44444  688889988765332  2223456789999998876654 33  5666777543321   1111 11223


Q ss_pred             EEEEEEcCCCEEEEeeCC-C--cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC--eEEEEECCCCcee
Q psy17243        156 TCFTVTWDSQYLITGSRD-M--SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS--NLIVWDMETGGEE  230 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~  230 (392)
                      ....|+|++++|+....+ +  .|.++|+.+++... +. +........|+|++..++++...++  .|.++++. +...
T Consensus       334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~  410 (430)
T PRK00178        334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVR  410 (430)
T ss_pred             cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCce
Confidence            456799999998877643 2  58889998876433 32 1222235689954444444444333  46677774 4444


Q ss_pred             eeecccccceeEEEEcC
Q psy17243        231 HFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~~  247 (392)
                      ..+..+.+.+...+|+|
T Consensus       411 ~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        411 LPLPTAQGEVREPSWSP  427 (430)
T ss_pred             EECcCCCCCcCCCccCC
Confidence            45554555666667765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=1.4e-12  Score=102.83  Aligned_cols=152  Identities=11%  Similarity=0.148  Sum_probs=107.0

Q ss_pred             EEEEEecCCCEEEEEeC----------CCeEEEEEcCCc--ee--ee-ecccceeEEEEeCCCCEEEEe--cCCCcEEEE
Q psy17243         72 LAVAVLSDSRRVVTSDK----------AGVIAVWVADNA--QL--LY-SALGPSKCLTVTHNMKYIVSG--DGDNSLRIW  134 (392)
Q Consensus        72 ~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~--~~--~~-~~~~~~~~~~~~~~~~~l~~~--~~d~~i~~~  134 (392)
                      ..+.|+|+|.+|++-..          -+...+|.++..  ..  +. ...+++..++|+|+++.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45788888887765433          134555555322  11  11 223479999999999987665  456799999


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC---CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEE
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR---DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  211 (392)
                      |++   .....   .-....++.+.|+|+|++|++++.   .|.|.+||.++.+.+.... | ..++.++|+ |++++|+
T Consensus        89 d~~---~~~i~---~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~Ws-PdGr~~~  159 (194)
T PF08662_consen   89 DVK---GKKIF---SFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWS-PDGRYLA  159 (194)
T ss_pred             cCc---ccEeE---eecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEc-CCCCEEE
Confidence            995   21111   123567789999999999999874   4679999999988887765 3 347899999 6777777


Q ss_pred             EecC------CCeEEEEECCCCceeeee
Q psy17243        212 SGSK------DSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       212 ~~~~------dg~i~iwd~~~~~~~~~~  233 (392)
                      ++..      |+.++||+.. |+.+...
T Consensus       160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  160 TATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEEeccceeccccEEEEEec-CeEeEec
Confidence            7653      7889999985 6666543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=7.7e-12  Score=111.48  Aligned_cols=239  Identities=11%  Similarity=0.016  Sum_probs=145.4

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCe--E-EEEeCC--CeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIF--A-VSGSED--NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l-~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ..|.+.|...+. .+.+......+..-+|+|||+.  + ++...+  ..|.+.++..++...... ..+......|+|||
T Consensus       165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCC
Confidence            467777776444 4456556667788899999874  2 244334  357788888776443332 44455678999999


Q ss_pred             CEEEEEeC-CC----eEEEEEcCCc---eeeeec---ccceeEEEEeCCCCEEEEec-CCCcEEEEeCCCCCCCCcceee
Q psy17243         81 RRVVTSDK-AG----VIAVWVADNA---QLLYSA---LGPSKCLTVTHNMKYIVSGD-GDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        81 ~~l~~~~~-d~----~i~iwd~~~~---~~~~~~---~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      +.|+..+. +|    .+..|++..+   +.....   ........|+|||+.|+..+ .+|...+|.+............
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l  322 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL  322 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence            98887653 22    3444676642   222111   12335679999999887665 4565555543211111111222


Q ss_pred             eccccceEEEEEEcCCCEEEEeeCC---CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecC--CCeEEEEE
Q psy17243        149 VSHSEEITCFTVTWDSQYLITGSRD---MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK--DSNLIVWD  223 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd  223 (392)
                      ......+....|+|||++|+....+   ..|.+||+.+++... +......+....|+|++..+++++..  ...|.++|
T Consensus       323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd  401 (428)
T PRK01029        323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS  401 (428)
T ss_pred             ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            2333466788999999988876543   469999998887644 33333456778999544444444443  35688899


Q ss_pred             CCCCceeeeecccccceeEEEEcCC
Q psy17243        224 METGGEEHFLAGHLGCVTCVKLAGD  248 (392)
Q Consensus       224 ~~~~~~~~~~~~~~~~v~~~~~~~d  248 (392)
                      +..++..... ...+.+...+|+|-
T Consensus       402 l~~g~~~~Lt-~~~g~~~~p~Ws~~  425 (428)
T PRK01029        402 LITKKTRKIV-IGSGEKRFPSWGAF  425 (428)
T ss_pred             CCCCCEEEee-cCCCcccCceecCC
Confidence            9877654333 34455667777764

>KOG1310|consensus

Probab=99.54  E-value=1.5e-13  Score=117.33  Aligned_cols=188  Identities=19%  Similarity=0.286  Sum_probs=141.0

Q ss_pred             CCccCCeEEEEECCCccceeee-ccCCcCeeEEEecC--CCCeEEEEeCCCeEEEEeCCCC----------ceeEEeccc
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTM-EGHLNTVSCVAISP--NSIFAVSGSEDNTAKVWGLTLG----------SVVSTFKSH   67 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~   67 (392)
                      +|++|-.+.|||.-..++++.+ .+|...|.++.|-|  +.+.+++|..|..|+++|+...          .....+..|
T Consensus        67 SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~ch  146 (758)
T KOG1310|consen   67 SGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCH  146 (758)
T ss_pred             ecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhh
Confidence            6899999999999988888887 46999999999999  4568999999999999999742          344556678


Q ss_pred             ccceEEEEEecCC-CEEEEEeCCCeEEEEEcCCceeee----------ec---ccceeEEEEeCC-CCEEEEecCCCcEE
Q psy17243         68 QSTILAVAVLSDS-RRVVTSDKAGVIAVWVADNAQLLY----------SA---LGPSKCLTVTHN-MKYIVSGDGDNSLR  132 (392)
Q Consensus        68 ~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~----------~~---~~~~~~~~~~~~-~~~l~~~~~d~~i~  132 (392)
                      ...|..++-.|++ ..+.++++||+++-+|++....-.          ..   .....|+.++|. ..+|++|+.|-..+
T Consensus       147 t~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfar  226 (758)
T KOG1310|consen  147 TDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFAR  226 (758)
T ss_pred             hhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhh
Confidence            9999999999998 788999999999999998743211          11   124578999994 56899999999999


Q ss_pred             EEeCCCCCC--------CC-------ccee-eecc--------ccc---eEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe
Q psy17243        133 IWPTSPQTH--------KD-------DERF-TVSH--------SEE---ITCFTVTWDSQYLITGSRDMSLKVWQVVGGK  185 (392)
Q Consensus       133 ~~d~~~~~~--------~~-------~~~~-~~~~--------~~~---v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  185 (392)
                      +||.+....        ..       .... ...|        ...   ++-+.|+|+|.-|++.-..-.|+++|+..++
T Consensus       227 LYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  227 LYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             hhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence            999432100        00       0111 1111        112   4557799999888877777789999998765


Q ss_pred             EEE
Q psy17243        186 LAQ  188 (392)
Q Consensus       186 ~~~  188 (392)
                      ...
T Consensus       307 ~~~  309 (758)
T KOG1310|consen  307 SPT  309 (758)
T ss_pred             Cce
Confidence            443

>KOG3881|consensus

Probab=99.54  E-value=4.7e-13  Score=109.57  Aligned_cols=198  Identities=11%  Similarity=0.098  Sum_probs=150.5

Q ss_pred             CccCCeEEEEECCCcc----ceeeeccCCcCeeEEEecCCCC-eEEEEeCC--CeEEEEeCCCCceeEEecccc------
Q psy17243          2 GGMDCLVNVWQMNSHE----LQSTMEGHLNTVSCVAISPNSI-FAVSGSED--NTAKVWGLTLGSVVSTFKSHQ------   68 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~------   68 (392)
                      +-.+|.+.+|..+.+.    .+..+..+ ..+..+.-++... .+++|+..  ..++|||++..+.+.+-+.-+      
T Consensus       121 c~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L  199 (412)
T KOG3881|consen  121 CVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL  199 (412)
T ss_pred             EecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence            4578999999987433    23334333 5577777777554 45568888  889999999887666554322      


Q ss_pred             ---cceEEEEEecC--CCEEEEEeCCCeEEEEEcCCcee-eee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCC
Q psy17243         69 ---STILAVAVLSD--SRRVVTSDKAGVIAVWVADNAQL-LYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ  139 (392)
Q Consensus        69 ---~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~-~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  139 (392)
                         -.++++.|.+.  ...|++++.-+.+++||...++. +..   ...++.++...|.++++++|..-+.+..||++..
T Consensus       200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~  279 (412)
T KOG3881|consen  200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG  279 (412)
T ss_pred             eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence               23678899888  78999999999999999997754 322   3458889999999999999999999999999854


Q ss_pred             CCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEe
Q psy17243        140 THKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVA  203 (392)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  203 (392)
                      .....  ...+..+.++++..+|...++++++-|..++|+|+.+.+++.... -...++++.+.
T Consensus       280 kl~g~--~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~  340 (412)
T KOG3881|consen  280 KLLGC--GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLR  340 (412)
T ss_pred             eeecc--ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEec
Confidence            33322  244677899999999999999999999999999999977765543 24556666665

>KOG4547|consensus

Probab=99.54  E-value=1.5e-12  Score=112.22  Aligned_cols=198  Identities=13%  Similarity=0.123  Sum_probs=147.3

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCceeEEeccc---ccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccceeE
Q psy17243         36 PNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH---QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKC  112 (392)
Q Consensus        36 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  112 (392)
                      |...++|....||.+++|+...++....+...   .+...+..|                   .+.-+........--..
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w-------------------~L~~~~s~~k~~~~~~~   63 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKW-------------------GLSADYSPMKWLSLEKA   63 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEE-------------------EEEeccchHHHHhHHHH
Confidence            45678999999999999999998887776531   223333333                   21111000000000011


Q ss_pred             EEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec
Q psy17243        113 LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG  192 (392)
Q Consensus       113 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  192 (392)
                      ...+.+...++-|...|.|.+|+...++..... ....|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+..
T Consensus        64 ~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~  142 (541)
T KOG4547|consen   64 KKASLDTSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE  142 (541)
T ss_pred             hhccCCceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc
Confidence            112335557888999999999998754333222 2246899999999998888999999999999999999999999998


Q ss_pred             CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCC-----CeEEEEcC
Q psy17243        193 HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGD-----GTVAMSDL  256 (392)
Q Consensus       193 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~d-----g~~~~~~~  256 (392)
                      ....+.+++.+ +++.++++++  +.|++||+++++.+..+.+|.++|++++|..+     |.++++..
T Consensus       143 ~~~~~~sl~is-~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa  208 (541)
T KOG4547|consen  143 QKPLVSSLCIS-PDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA  208 (541)
T ss_pred             CCCccceEEEc-CCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecc
Confidence            88899999999 5688888774  78999999999999999999999999999877     77777764

>KOG2314|consensus

Probab=99.50  E-value=1.1e-12  Score=112.15  Aligned_cols=311  Identities=11%  Similarity=0.048  Sum_probs=193.7

Q ss_pred             eeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeC-----------CCeEEEEEc
Q psy17243         29 VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK-----------AGVIAVWVA   97 (392)
Q Consensus        29 v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~   97 (392)
                      -+-+.|||.|.||+|--.-| |.+|--++...++.+. |. .|.-+.|+|+.++|++-+.           ...+.|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            46789999999999987665 8899877777777776 54 4788999999999998652           257999999


Q ss_pred             CCceeeeeccc------ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee
Q psy17243         98 DNAQLLYSALG------PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS  171 (392)
Q Consensus        98 ~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  171 (392)
                      .+|...+.+..      .-.-+.|+.|++++|.-.. ..|.+|+..+.   .......-.-..|....|+|.+++|+-=.
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf---~lld~Kslki~gIr~FswsP~~~llAYwt  365 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF---MLLDKKSLKISGIRDFSWSPTSNLLAYWT  365 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce---eeecccccCCccccCcccCCCcceEEEEc
Confidence            99988776654      1235789999999998776 56888877532   11111122346788899999988877543


Q ss_pred             C-----CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEE----------ecCCCeEEEEECCCCceeeeeccc
Q psy17243        172 R-----DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS----------GSKDSNLIVWDMETGGEEHFLAGH  236 (392)
Q Consensus       172 ~-----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----------~~~dg~i~iwd~~~~~~~~~~~~~  236 (392)
                      .     -..+.+..+.+++.++.-.-|.-.=..+-|- .++.+|+.          .+.-..+.|+.++..........-
T Consensus       366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel  444 (698)
T KOG2314|consen  366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL  444 (698)
T ss_pred             ccccCCcceEEEEecCccceeeeccceeeeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence            2     2456777777777666544333222334555 45555543          122234667777655543333335


Q ss_pred             ccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccc
Q psy17243        237 LGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEI  316 (392)
Q Consensus       237 ~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  316 (392)
                      ...|...+|-|.|..++.-.....              ...+..|....                        ....-..
T Consensus       445 ke~vi~FaWEP~gdkF~vi~g~~~--------------k~tvsfY~~e~------------------------~~~~~~l  486 (698)
T KOG2314|consen  445 KESVIAFAWEPHGDKFAVISGNTV--------------KNTVSFYAVET------------------------NIKKPSL  486 (698)
T ss_pred             chheeeeeeccCCCeEEEEEcccc--------------ccceeEEEeec------------------------CCCchhh
Confidence            568889999998876665321100              00011111100                        0011112


Q ss_pred             eecceeccCCCCCCChhhhhhhccc--ChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCccc
Q psy17243        317 SKIPIKDNVGSQGLGPEQAALAQSQ--HFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVD  388 (392)
Q Consensus       317 ~~~~~~~~~~~~~~s~dg~~la~s~--~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~  388 (392)
                      ++.-......+.-|||.|+++++.+  +..|.+.++|..-......   ....+...+.+.|.|.|+|++|++.
T Consensus       487 Vk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~---~~~eh~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  487 VKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDT---ASPEHFAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             hhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhc---cCccccccccceECCCCCEEEEeee
Confidence            2222223334557999999998544  3467788888874333111   1112233444899999999997654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.49  E-value=3.2e-12  Score=108.32  Aligned_cols=238  Identities=13%  Similarity=0.131  Sum_probs=158.2

Q ss_pred             EEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC
Q psy17243         10 VWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA   89 (392)
Q Consensus        10 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   89 (392)
                      +|+-.+......+..-.-++...+|||.|.+|++.... .|.+|.-.....+..+.  ...|..+.|+|++++|.+-+..
T Consensus        16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~   92 (561)
T COG5354          16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSRE   92 (561)
T ss_pred             eecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccC
Confidence            34545544444455466789999999999999987665 49999988877666665  3468999999999999986543


Q ss_pred             C---------------eEEEEEcCCceeeeecccce------eEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee
Q psy17243         90 G---------------VIAVWVADNAQLLYSALGPS------KCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        90 ~---------------~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      .               .+.+||..++.++..+....      .-+.|+.+.++++-. ....++++++. ... ......
T Consensus        93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t-~n~-~~~p~~  169 (561)
T COG5354          93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEIT-DNI-EEHPFK  169 (561)
T ss_pred             CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecC-Ccc-ccCchh
Confidence            3               49999999999988776532      257788888777655 44678999973 211 122222


Q ss_pred             eccccceEEEEEEcCCC--EEEE-----eeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEE-ec------
Q psy17243        149 VSHSEEITCFTVTWDSQ--YLIT-----GSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS-GS------  214 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~~~--~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~------  214 (392)
                      .-....+....|+|.++  .|+.     ....+.+++|.+..++.+....-....-..+.|. ..+.+++. .-      
T Consensus       170 ~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksn  248 (561)
T COG5354         170 NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSN  248 (561)
T ss_pred             hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecc
Confidence            12346788888998643  3332     3457889999998776654433223333456777 33443332 11      


Q ss_pred             ----CCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        215 ----KDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       215 ----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                          ....++++++..... .......++|...+|.|.++-++..
T Consensus       249 KsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi  292 (561)
T COG5354         249 KSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVI  292 (561)
T ss_pred             cceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEE
Confidence                134688888874333 3333567899999999987766553

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=1.7e-09  Score=94.15  Aligned_cols=241  Identities=15%  Similarity=0.210  Sum_probs=150.9

Q ss_pred             cCCeEEEEECCCc--c--ceeeeccCCcCeeEEEecCCCCeEEEEeC-CCeEEEEeCCC-CceeEE---ec---------
Q psy17243          4 MDCLVNVWQMNSH--E--LQSTMEGHLNTVSCVAISPNSIFAVSGSE-DNTAKVWGLTL-GSVVST---FK---------   65 (392)
Q Consensus         4 ~dg~i~vwd~~~~--~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~v~iwd~~~-~~~~~~---~~---------   65 (392)
                      .+|.|..|++...  +  .+.........-..++++|++++|+++.. +|.|.++++.. +.....   +.         
T Consensus        60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~  139 (345)
T PF10282_consen   60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD  139 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTT
T ss_pred             CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccc
Confidence            5678888887653  2  33333323445568999999999988864 89999999987 433222   21         


Q ss_pred             -ccccceEEEEEecCCCEEEEEeC-CCeEEEEEcCCce--eee--ec----ccceeEEEEeCCCCEEEEecC-CCcEEEE
Q psy17243         66 -SHQSTILAVAVLSDSRRVVTSDK-AGVIAVWVADNAQ--LLY--SA----LGPSKCLTVTHNMKYIVSGDG-DNSLRIW  134 (392)
Q Consensus        66 -~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~--~~~--~~----~~~~~~~~~~~~~~~l~~~~~-d~~i~~~  134 (392)
                       .......++.++|+++++++... ...|.+|+++...  +..  ..    ......+.|+|+++++++..+ ++.|.+|
T Consensus       140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~  219 (345)
T PF10282_consen  140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF  219 (345)
T ss_dssp             TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence             11244789999999998887654 4579999987654  211  11    124578999999998877655 7889999


Q ss_pred             eCCCCCCC-Ccceeee------ccccceEEEEEEcCCCEEEEee-CCCcEEEEEcC--CC--eEEEEEecCCCceeEEEE
Q psy17243        135 PTSPQTHK-DDERFTV------SHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVV--GG--KLAQVLVGHTDHVSCVAV  202 (392)
Q Consensus       135 d~~~~~~~-~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~--~~~~~~~~~~~~v~~~~~  202 (392)
                      ++...... .......      ........++++||+++|+++. ....|.+|++.  ++  +.+..+.........+++
T Consensus       220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~  299 (345)
T PF10282_consen  220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF  299 (345)
T ss_dssp             EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred             eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence            88722211 1111110      1122578899999999988876 46789999993  23  334444444455789999


Q ss_pred             ecCCCcEEE-EecCCCeEEEEEC--CCCceeeeec-ccccceeEEEE
Q psy17243        203 AVTNKSLVV-SGSKDSNLIVWDM--ETGGEEHFLA-GHLGCVTCVKL  245 (392)
Q Consensus       203 ~~~~~~~l~-~~~~dg~i~iwd~--~~~~~~~~~~-~~~~~v~~~~~  245 (392)
                      +| ++++|+ +.-.++.|.+|++  .+|++...-. ..-....|+.|
T Consensus       300 s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  300 SP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             -T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             eC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            95 555555 4456789999976  4565443322 12234455554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.45  E-value=6.6e-11  Score=106.59  Aligned_cols=200  Identities=15%  Similarity=0.090  Sum_probs=134.2

Q ss_pred             CeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC---CeEEEEEcCCceee--eecccceeEEEEeCCCCEE
Q psy17243         48 NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA---GVIAVWVADNAQLL--YSALGPSKCLTVTHNMKYI  122 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~l  122 (392)
                      ..|.++|..... ...+..+...+....|+|++++|+.+...   ..|++||+.+++..  ........+..|+|+++.|
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            358888875443 44555566778999999999999887654   47999999887543  3344556678999999977


Q ss_pred             EEe-cCCC--cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-CC--cEEEEEcCCCeEEEEEecCCCc
Q psy17243        123 VSG-DGDN--SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DM--SLKVWQVVGGKLAQVLVGHTDH  196 (392)
Q Consensus       123 ~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~  196 (392)
                      +.. +.++  .|++||+.+....    ....+........|+|+++.|+..+. ++  .|+++|+.+++.. .+..+...
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~  323 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGY  323 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCC
Confidence            654 4444  5888888643221    11123333456789999998876654 33  5888888776543 34445556


Q ss_pred             eeEEEEecCCCcEEEEecCCC---eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        197 VSCVAVAVTNKSLVVSGSKDS---NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       197 v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .....|+ +++.+++.++.++   .|.+||+.++... .+... .......|+|||+.++...
T Consensus       324 ~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~  383 (417)
T TIGR02800       324 NASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYAT  383 (417)
T ss_pred             ccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEE
Confidence            6778899 5666666666555   7899999875543 33222 2345668999999888754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4190|consensus

Probab=99.44  E-value=2.8e-13  Score=115.96  Aligned_cols=212  Identities=16%  Similarity=0.253  Sum_probs=160.0

Q ss_pred             eeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC-------CceeEEecccccceEEEEEecCCCEEEEEeCCCe
Q psy17243         19 QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL-------GSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGV   91 (392)
Q Consensus        19 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   91 (392)
                      +..+.+|...|..++-..+.+.+++++.|.+|++|.++.       ..+..+++.|+.+|.++.|..+-++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            456789999999998888888899999999999998853       34677888999999999999988777664  788


Q ss_pred             EEEEEcCCceeeeecc-----cceeEEEEeC--CCCEEEEe-cCCCcEEEEeCCCCCCCCcceeee--ccccceEEEEEE
Q psy17243         92 IAVWVADNAQLLYSAL-----GPSKCLTVTH--NMKYIVSG-DGDNSLRIWPTSPQTHKDDERFTV--SHSEEITCFTVT  161 (392)
Q Consensus        92 i~iwd~~~~~~~~~~~-----~~~~~~~~~~--~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~v~~~~~~  161 (392)
                      |.+||.--++.+....     +....+..-+  +...+.++ +...+|+++|.+......+.+...  ..+..+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999988777665322     2222333323  34444444 678999999999777666665542  344678999999


Q ss_pred             cCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEE-EECCCCceeeeec
Q psy17243        162 WDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV-WDMETGGEEHFLA  234 (392)
Q Consensus       162 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~  234 (392)
                      +.|+.++++-.+|.|.+.|.++|+.+..++.-......++  .+.++.++....|.++.+ |....+......+
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla--apsdq~L~~saldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA--APSDQALAQSALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc--CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence            9999999999999999999999998888765544443333  356777888888888888 8776665444443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.44  E-value=4.6e-10  Score=95.40  Aligned_cols=227  Identities=12%  Similarity=-0.000  Sum_probs=146.2

Q ss_pred             ccCCeEEEEECCCccceeeeccCC-------cCeeEEEecCCCCeEEEEe-C-CCeEEEEeCCCCceeEEecccccceEE
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHL-------NTVSCVAISPNSIFAVSGS-E-DNTAKVWGLTLGSVVSTFKSHQSTILA   73 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~~~~-~-dg~v~iwd~~~~~~~~~~~~~~~~v~~   73 (392)
                      -.+..|.+||..+++.+..+.--.       ..-..++++|||++|+... . +..|.+.|+.+++.+.++.. .+...-
T Consensus        74 ~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~v  152 (352)
T TIGR02658        74 KRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHI  152 (352)
T ss_pred             CCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEE
Confidence            367899999999999998887422       2234789999999998776 3 68999999999999998874 222222


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccce---------eEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCC
Q psy17243         74 VAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---------KCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKD  143 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~  143 (392)
                      ...+++.. + +-+.||......+++.........++         ..-.+.+ +++++++... |.|.+.|+.......
T Consensus       153 y~t~e~~~-~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~  229 (352)
T TIGR02658       153 FPTANDTF-F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF  229 (352)
T ss_pred             EEecCCcc-E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee
Confidence            22222221 1 22334443333222211111111010         0003345 7888887777 999999975432221


Q ss_pred             cceeee---------ccccceEEEEEEcCCCEEEEee----------CCCcEEEEEcCCCeEEEEEecCCCceeEEEEec
Q psy17243        144 DERFTV---------SHSEEITCFTVTWDSQYLITGS----------RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAV  204 (392)
Q Consensus       144 ~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  204 (392)
                      ......         -....+.-++++++++++++..          ..+.|.++|..+++.+..+.. ...+..++++|
T Consensus       230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~  308 (352)
T TIGR02658       230 LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQ  308 (352)
T ss_pred             cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECC
Confidence            111110         0233444599999999888843          225799999999999988874 45788999995


Q ss_pred             CCCcEEEEec-CCCeEEEEECCCCceeeeec
Q psy17243        205 TNKSLVVSGS-KDSNLIVWDMETGGEEHFLA  234 (392)
Q Consensus       205 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~  234 (392)
                      ++..+|++.. .++.|.++|..+++.+..+.
T Consensus       309 Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       309 DAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             CCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            5442666555 68889999999999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280|consensus

Probab=99.42  E-value=1.6e-10  Score=91.59  Aligned_cols=201  Identities=16%  Similarity=0.136  Sum_probs=143.3

Q ss_pred             CCCeEEEEeCCCCceeE--Eec-ccccceEEEEEec---CCC-EEEEEeCCCeEEEEEcCCceeeeeccc---------c
Q psy17243         46 EDNTAKVWGLTLGSVVS--TFK-SHQSTILAVAVLS---DSR-RVVTSDKAGVIAVWVADNAQLLYSALG---------P  109 (392)
Q Consensus        46 ~dg~v~iwd~~~~~~~~--~~~-~~~~~v~~~~~~~---~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~  109 (392)
                      ..|.+.+|++++.+...  +++ ...+.+..+.|.-   ++. .++-+...|.|.++..........+.+         .
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            34778999988766544  111 1234566677753   333 566777889999997665433222211         2


Q ss_pred             eeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCC-CeEE
Q psy17243        110 SKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVG-GKLA  187 (392)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~-~~~~  187 (392)
                      ..++.|++.+..++++..+|.+.+-+..... .+.......|..+.....|+.. .+++++|+.|+.+..||++. ++.+
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            3577889999999999999999855543222 2222244578888888888754 67999999999999999993 3333


Q ss_pred             EE-EecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC-CceeeeecccccceeEEEEcCC
Q psy17243        188 QV-LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET-GGEEHFLAGHLGCVTCVKLAGD  248 (392)
Q Consensus       188 ~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~d  248 (392)
                      .. .+.|...|.+|.-+|+.+.++++|+.|-.|++||.++ ++++..-+ -.+.|..+.++|.
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPE  264 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecch
Confidence            33 4568899999999999999999999999999999994 55554333 3478999999884

>KOG0974|consensus

Probab=99.41  E-value=3.9e-11  Score=110.20  Aligned_cols=245  Identities=15%  Similarity=0.231  Sum_probs=175.1

Q ss_pred             ccCCeEEEEECCCccceeeecc-CCcCeeEEEecCC------CCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEE
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEG-HLNTVSCVAISPN------SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVA   75 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~   75 (392)
                      +.--.|.+||+.++..+..+.. +..++.    .+.      +.+++++..-+.+..=+... +..   ......|....
T Consensus        23 g~gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~~-~~~---~~~s~wi~g~~   94 (967)
T KOG0974|consen   23 GSGPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEASN-QII---ERFSDWIFGAK   94 (967)
T ss_pred             cCCCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchhh-hhh---hhccccccccc
Confidence            4445689999988876655432 111111    111      22445554433333222111 111   11233344455


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCceeeeecccceeEE-------EEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCL-------TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      +..+.+.++.++.++.+.+||...+..+........++       -.+++.-++++|+.-+.|.+|+...   .......
T Consensus        95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~---dn~p~~l  171 (967)
T KOG0974|consen   95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE---DNKPIRL  171 (967)
T ss_pred             hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc---cCCccee
Confidence            55677899999999999999999998887776654432       3456777899999999999999972   2222256


Q ss_pred             eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEE-EEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        149 VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQ-VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      .+|.+.+-.+.++.||+++++.++|.++++|++.+.+... ..-+|+..+..++|. ++  .+++++.|.+.++|+.+ +
T Consensus       172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n--~i~t~gedctcrvW~~~-~  247 (967)
T KOG0974|consen  172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN--RIITVGEDCTCRVWGVN-G  247 (967)
T ss_pred             cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc--eeEEeccceEEEEEecc-c
Confidence            6899999999999999999999999999999999987665 667899999999999 33  89999999999999765 5


Q ss_pred             ceeeeeccccc-ceeEEEEcCCCeEEEEcCCCCCCC
Q psy17243        228 GEEHFLAGHLG-CVTCVKLAGDGTVAMSDLPPSRPA  262 (392)
Q Consensus       228 ~~~~~~~~~~~-~v~~~~~~~dg~~~~~~~~~~~~~  262 (392)
                      +.+..+..|.. .|..++..++..+++++..++...
T Consensus       248 ~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk  283 (967)
T KOG0974|consen  248 TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK  283 (967)
T ss_pred             ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence            55667777765 688888888888888887765543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=2.5e-10  Score=103.03  Aligned_cols=199  Identities=14%  Similarity=0.052  Sum_probs=128.9

Q ss_pred             eEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC---CeEEEEEcCCceee--eecccceeEEEEeCCCCEEE
Q psy17243         49 TAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA---GVIAVWVADNAQLL--YSALGPSKCLTVTHNMKYIV  123 (392)
Q Consensus        49 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~l~  123 (392)
                      .|.++|.+.+.. ..+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++..  ....+......|+|+++.|+
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence            477888765543 4454567789999999999998876543   36899999887543  33344556789999999887


Q ss_pred             E-ecCCC--cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-C--CcEEEEEcCCCeEEEEEecCCCce
Q psy17243        124 S-GDGDN--SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-D--MSLKVWQVVGGKLAQVLVGHTDHV  197 (392)
Q Consensus       124 ~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~v  197 (392)
                      . ...++  .|+++|+.++...    ....+........|+||++.|+..+. +  ..|+++|+.+++...... .....
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~  333 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYN  333 (430)
T ss_pred             EEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCc
Confidence            5 44444  6888888754322    11223344566789999998776553 3  357778887776433221 22233


Q ss_pred             eEEEEecCCCcEEEEec-CCC--eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        198 SCVAVAVTNKSLVVSGS-KDS--NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       198 ~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ....|+| ++..++..+ .++  .|.++|+.+++... +.. ........|+|||+.++...
T Consensus       334 ~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~  392 (430)
T PRK00178        334 ARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYAT  392 (430)
T ss_pred             cceEECC-CCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEE
Confidence            4567895 555555443 343  58889998876533 221 22233568999999998864

>KOG1354|consensus

Probab=99.41  E-value=2.8e-11  Score=97.83  Aligned_cols=230  Identities=13%  Similarity=0.146  Sum_probs=156.5

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc-----eeEEecccc------------cceEEEEEecCCC--EEEE
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS-----VVSTFKSHQ------------STILAVAVLSDSR--RVVT   85 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~   85 (392)
                      ...-|.++.|...|.+||+|..+|.|.++.-+...     ....++.|.            ..|..+.|.++++  .++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            34568999999999999999999999999754322     233343343            4688999998764  6778


Q ss_pred             EeCCCeEEEEEcCCceeee---------------------------------------ecccceeEEEEeCCCCEEEEec
Q psy17243         86 SDKAGVIAVWVADNAQLLY---------------------------------------SALGPSKCLTVTHNMKYIVSGD  126 (392)
Q Consensus        86 ~~~d~~i~iwd~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~l~~~~  126 (392)
                      ...|.+|++|.+.......                                       .+.-+++++.++.|...++++ 
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence            8899999999775331110                                       011245678888888888776 


Q ss_pred             CCCcEEEEeCCCCCCCCcceeeec-----cccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCCeEE----EE-------
Q psy17243        127 GDNSLRIWPTSPQTHKDDERFTVS-----HSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVGGKLA----QV-------  189 (392)
Q Consensus       127 ~d~~i~~~d~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~----~~-------  189 (392)
                      .|=.|.+|+++-....-.+.-...     -..-|++..|+|. .+.++-.+..|+|++.|++....-    +.       
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            467789998863322211111111     2345788889996 567888888999999999853211    01       


Q ss_pred             -----EecCCCceeEEEEecCCCcEEEEecCCCeEEEEECC-CCceeeeeccccc------------c---eeEEEEcCC
Q psy17243        190 -----LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME-TGGEEHFLAGHLG------------C---VTCVKLAGD  248 (392)
Q Consensus       190 -----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~------------~---v~~~~~~~d  248 (392)
                           +..--..|..+.|+ .+|+++++-+ =-+|++||+. ..+++.+++.|..            .   -..++|+.+
T Consensus       263 ~~rsffseiIsSISDvKFs-~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~  340 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFS-HSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN  340 (433)
T ss_pred             cchhhHHHHhhhhhceEEc-cCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence                 11122457889999 7888888653 2689999994 5667777766642            1   236789999


Q ss_pred             CeEEEEcCC
Q psy17243        249 GTVAMSDLP  257 (392)
Q Consensus       249 g~~~~~~~~  257 (392)
                      +.+++++..
T Consensus       341 ~~~v~TGsy  349 (433)
T KOG1354|consen  341 DSYVMTGSY  349 (433)
T ss_pred             cceEecccc
Confidence            999999864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=3.3e-09  Score=86.93  Aligned_cols=252  Identities=12%  Similarity=0.159  Sum_probs=171.5

Q ss_pred             CCeEEEEECCC--ccce-eeeccCCcCeeEEEecCCCCeEEEEeC---CCeEEEEeCCC--Ccee--EEecccccceEEE
Q psy17243          5 DCLVNVWQMNS--HELQ-STMEGHLNTVSCVAISPNSIFAVSGSE---DNTAKVWGLTL--GSVV--STFKSHQSTILAV   74 (392)
Q Consensus         5 dg~i~vwd~~~--~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~v~iwd~~~--~~~~--~~~~~~~~~v~~~   74 (392)
                      +.-|++|++.+  +++. .++-.+....+-|+|+|++++|.++-.   +|.|.-|.++.  |++.  ........+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            56799999873  2221 122347788999999999999988754   47788887764  4432  2222223344889


Q ss_pred             EEecCCCEEEEEeC-CCeEEEEEcCC-ceee-----eecc----------cceeEEEEeCCCCEEEEecC-CCcEEEEeC
Q psy17243         75 AVLSDSRRVVTSDK-AGVIAVWVADN-AQLL-----YSAL----------GPSKCLTVTHNMKYIVSGDG-DNSLRIWPT  136 (392)
Q Consensus        75 ~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~~-----~~~~----------~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~  136 (392)
                      ++++++++++++.. .|.|.++-+.. |.+.     ..+.          .++....+.|++++|++.+. ..+|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999999988864 58899998865 3221     1111          23667889999999988765 467999999


Q ss_pred             CCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcCCC-eEEEEEec---------CCCceeEEEEecC
Q psy17243        137 SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVGG-KLAQVLVG---------HTDHVSCVAVAVT  205 (392)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~---------~~~~v~~~~~~~~  205 (392)
                      ..+................+.|.|+|++++.++.++ +++|.+|..... ..+..++.         .......|.++ +
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis-~  253 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS-P  253 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC-C
Confidence            866555444444455677789999999999887775 899999998773 22222221         12345678888 7


Q ss_pred             CCcEEEEecC-CCeEEEEECCCC-ceee---eecccccceeEEEEcCCCeEEEEcCC
Q psy17243        206 NKSLVVSGSK-DSNLIVWDMETG-GEEH---FLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       206 ~~~~l~~~~~-dg~i~iwd~~~~-~~~~---~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      ++++|.++.. ...|-+|.+... ..+.   ....+...-+...|+++|++|+...+
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence            8888887653 347888877643 2222   22334445788999999999998753

>KOG2315|consensus

Probab=99.41  E-value=7.6e-11  Score=101.34  Aligned_cols=322  Identities=9%  Similarity=0.037  Sum_probs=186.9

Q ss_pred             eEEEEECCCccceeeeccC---CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEE
Q psy17243          7 LVNVWQMNSHELQSTMEGH---LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV   83 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   83 (392)
                      .+.+|+....+.......+   ..++...+++++|++++.+ .+..++|++..++..+-+....  .+.++.|+|-+++|
T Consensus        12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL   88 (566)
T KOG2315|consen   12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYL   88 (566)
T ss_pred             eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeeccccccc
Confidence            3667766443322222223   4457788999999887776 4678999999888655444422  78999999999988


Q ss_pred             EEE-----eC-----CCeEEEEEcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeec
Q psy17243         84 VTS-----DK-----AGVIAVWVADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS  150 (392)
Q Consensus        84 ~~~-----~~-----d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  150 (392)
                      .+-     ..     .-.+.+|+.+++.....+..   ...+..|+.|..+.+ --..+.+++|++.....    ....-
T Consensus        89 ~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~----~~~kl  163 (566)
T KOG2315|consen   89 LTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKT----IQHKL  163 (566)
T ss_pred             ccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccc----eeeee
Confidence            752     11     23578999999654444333   224777877765433 23457899999875211    12223


Q ss_pred             cccceEEEEEEcCCC--EEEE-----eeCCCcEEEEEcCCCeEE-----EEEecCCCceeEEEEecCCCcEEEEecC--C
Q psy17243        151 HSEEITCFTVTWDSQ--YLIT-----GSRDMSLKVWQVVGGKLA-----QVLVGHTDHVSCVAVAVTNKSLVVSGSK--D  216 (392)
Q Consensus       151 ~~~~v~~~~~~~~~~--~l~~-----~~~dg~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d  216 (392)
                      |...++.+.++|.+.  .+++     .+.-+.++||.......-     +.|  ....-..+.|.+....+|+.++.  |
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeec
Confidence            578899999998732  3333     344568999987632211     111  11222346677544445444332  2


Q ss_pred             ---------CeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEecc
Q psy17243        217 ---------SNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKY  287 (392)
Q Consensus       217 ---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (392)
                               .++++.++........+. ..++|.++.|+++|+-++...                               
T Consensus       242 ktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~Vvy-------------------------------  289 (566)
T KOG2315|consen  242 KTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVY-------------------------------  289 (566)
T ss_pred             CCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEE-------------------------------
Confidence                     358888887333333333 578999999999997555432                               


Q ss_pred             CCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhhhcccChH--HHHHHhhCCCCCCcccccccc
Q psy17243        288 GHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFD--QLEALWNKKSPPRSRRFEHSM  365 (392)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d--~~i~~Wd~~~~~~~~~~~~~~  365 (392)
                      |..+....+-.....    .+..-         -.......-|+|.|++|+++|-..  |.|-|||+.+-+....   ..
T Consensus       290 GfMPAkvtifnlr~~----~v~df---------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~---~~  353 (566)
T KOG2315|consen  290 GFMPAKVTIFNLRGK----PVFDF---------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK---FK  353 (566)
T ss_pred             ecccceEEEEcCCCC----EeEeC---------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc---cc
Confidence            111111111100000    00000         000111225899999998444332  7799999998544221   11


Q ss_pred             ccccCccccccccCccCCCCccc
Q psy17243        366 SKQNSYSSRQHSVDTDELSSPVD  388 (392)
Q Consensus       366 ~~~~~~~~~~fspdg~~l~~~~~  388 (392)
                      ..-..+  ..|+|||++++|+..
T Consensus       354 a~~tt~--~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  354 AANTTV--FEWSPDGEYFLTATT  374 (566)
T ss_pred             cCCceE--EEEcCCCcEEEEEec
Confidence            111223  799999999986643

>KOG1409|consensus

Probab=99.40  E-value=3.3e-11  Score=97.36  Aligned_cols=223  Identities=20%  Similarity=0.292  Sum_probs=167.9

Q ss_pred             CCccCCeEEEEEC-CCccceeeec-cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC----CCceeEEecccccceEEE
Q psy17243          1 MGGMDCLVNVWQM-NSHELQSTME-GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT----LGSVVSTFKSHQSTILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~-~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~v~~~   74 (392)
                      +.+.|.+++||-- ++++.-..+. ....+++++.+.++...|+.|-..|++.-+.+.    ....++....|...+..+
T Consensus        41 ~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~  120 (404)
T KOG1409|consen   41 SVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAI  120 (404)
T ss_pred             EccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeE
Confidence            3578899999954 4455444443 245789999999999999999999999988653    344566677899999999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc--ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc
Q psy17243         75 AVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG--PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS  152 (392)
Q Consensus        75 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  152 (392)
                      -|+...+.+++.+.|..+.---.+.+..+..+.-  ...++.+.-.  +...|...|.|..-.+... .........+|.
T Consensus       121 if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h~  197 (404)
T KOG1409|consen  121 VFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQN-GCQLITTFNGHT  197 (404)
T ss_pred             EecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeec-CCceEEEEcCcc
Confidence            9998889999999998877666666655543322  2222222212  6677777788777665432 334455566899


Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe-EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK-LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      ..+.+++|.+....|++|..|..+.+||+.-.+ ....+.+|...|..+... +.-..+++++.||.|.+|+.+..
T Consensus       198 ~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~-~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  198 GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA-QHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh-hhheeeeeccCCCeEEEEeccce
Confidence            999999999999999999999999999996544 445678899999988877 56778899999999999998754

>KOG2321|consensus

Probab=99.39  E-value=4.8e-11  Score=102.80  Aligned_cols=181  Identities=10%  Similarity=0.141  Sum_probs=142.2

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc-------------
Q psy17243         41 AVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL-------------  107 (392)
Q Consensus        41 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------  107 (392)
                      |+.++....|+=++++.|+.+..+....+.++++..++...+|++|+.+|.|..||.+.......+.             
T Consensus       148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~  227 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA  227 (703)
T ss_pred             EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence            4444455678888999999999998778999999999999999999999999999998876543322             


Q ss_pred             -cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC--CCEEEEeeCCCcEEEEEcCCC
Q psy17243        108 -GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD--SQYLITGSRDMSLKVWQVVGG  184 (392)
Q Consensus       108 -~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~  184 (392)
                       ..++++.|+.+|-.+++|+.+|.+.+||++.....  .........+|..+.|.+.  ++.+++. ....++|||-.++
T Consensus       228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl--~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G  304 (703)
T KOG2321|consen  228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL--LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG  304 (703)
T ss_pred             cCcceEEEecCCceeEEeeccCCcEEEEEcccCCce--eecccCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence             13789999999999999999999999999853322  2222345678888999775  4455554 4668999999999


Q ss_pred             eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        185 KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      +....+.. ...++.+++. ++..+++++-.++.+..|=+..
T Consensus       305 k~~asiEp-t~~lND~C~~-p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  305 KPMASIEP-TSDLNDFCFV-PGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             Cceeeccc-cCCcCceeee-cCCceEEEecCCCcceeEEccc
Confidence            99888874 4559999999 6667788888888888776654

>KOG1064|consensus

Probab=99.39  E-value=2e-12  Score=124.53  Aligned_cols=198  Identities=15%  Similarity=0.286  Sum_probs=154.3

Q ss_pred             ccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc-cccceEEEEEecCCCEEEEEeCCCeEEEEEcCCce
Q psy17243         23 EGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS-HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        23 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  101 (392)
                      +.+-..|.++.-+|...+.+||+.||.|++|....++.+..++. ....|+.+.|+.+|+.+..+..||.+.+|.....-
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence            33556788888899888999999999999999998888776652 34789999999999999999999999999988332


Q ss_pred             eee--ecccceeEEEEeCCCCEEEEe---cCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcE
Q psy17243        102 LLY--SALGPSKCLTVTHNMKYIVSG---DGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSL  176 (392)
Q Consensus       102 ~~~--~~~~~~~~~~~~~~~~~l~~~---~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  176 (392)
                      ...  .+......+.|-.  ..++++   +.++.+.+||.........+.  ..|...++++++.|..+.|++|+.+|.|
T Consensus      2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred             eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcE
Confidence            221  1222233333332  445554   346899999986444433333  6899999999999999999999999999


Q ss_pred             EEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      ++||++..+.++.++.         +.  ...++++|+..|.++||++.....++.++.
T Consensus      2361 ~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             EEeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEccccchhhcCch
Confidence            9999999888877764         32  577899999999999999998887776653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.38  E-value=3.6e-10  Score=96.17  Aligned_cols=239  Identities=12%  Similarity=0.090  Sum_probs=161.6

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCC---------------eEEEEeCCCCceeEEecccccc-
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDN---------------TAKVWGLTLGSVVSTFKSHQST-   70 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~-   70 (392)
                      .|.+|....+..+..+. | ..|..+.|+|+++||.+=+..+               .+.+||+.++..+..+.....+ 
T Consensus        54 ~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~  131 (561)
T COG5354          54 GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY  131 (561)
T ss_pred             ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc
Confidence            47888888777666665 4 4589999999999999876543               4999999999999998876655 


Q ss_pred             -eE-EEEEecCCCEEEEEeCCCeEEEEEcCCceee----eecc-cceeEEEEeCCC--CEEEE-----ecCCCcEEEEeC
Q psy17243         71 -IL-AVAVLSDSRRVVTSDKAGVIAVWVADNAQLL----YSAL-GPSKCLTVTHNM--KYIVS-----GDGDNSLRIWPT  136 (392)
Q Consensus        71 -v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~-~~~~~~~~~~~~--~~l~~-----~~~d~~i~~~d~  136 (392)
                       .. -+.|+-+.++++-. -...++++++ +....    ..+. ..+....++|.+  ..|+.     ....+.+++|.+
T Consensus       132 ~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI  209 (561)
T COG5354         132 LGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI  209 (561)
T ss_pred             cccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc
Confidence             44 67888888776654 3456899987 33221    1222 456677788853  33443     345678899988


Q ss_pred             CCCCCCCcceeeeccccceEEEEEEcCCCEEEEee-----------CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecC
Q psy17243        137 SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS-----------RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT  205 (392)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  205 (392)
                      ..........+.   .-.-..+.|.+.|++|++--           ....++|++++...+... ....++|...+|.|.
T Consensus       210 p~~s~l~tk~lf---k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~  285 (561)
T COG5354         210 PKNSVLVTKNLF---KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPL  285 (561)
T ss_pred             cCCCeeeeeeeE---eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee-ccccccceeeeeccc
Confidence            633222222222   22235677888888766432           135688888874433332 256889999999976


Q ss_pred             CCcEEEE-ecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        206 NKSLVVS-GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       206 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ...+.+. |-.+-.+.++|++.. ....  .....=+.+.|+|.+++++...
T Consensus       286 S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         286 SSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAG  334 (561)
T ss_pred             CCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEec
Confidence            6665444 467889999999865 3333  3455667888999999988853

>KOG1354|consensus

Probab=99.38  E-value=3.1e-11  Score=97.59  Aligned_cols=226  Identities=15%  Similarity=0.263  Sum_probs=154.3

Q ss_pred             CCccCCeEEEEECCCcc-----ceeeeccC------------CcCeeEEEecCCCC--eEEEEeCCCeEEEEeCCCCcee
Q psy17243          1 MGGMDCLVNVWQMNSHE-----LQSTMEGH------------LNTVSCVAISPNSI--FAVSGSEDNTAKVWGLTLGSVV   61 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~-----~~~~~~~h------------~~~v~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~   61 (392)
                      ||..+|.|.++.-....     ....++.|            ..+|..+.|.++++  .++....|.+|++|.+......
T Consensus        42 tGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k  121 (433)
T KOG1354|consen   42 TGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSK  121 (433)
T ss_pred             ecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccc
Confidence            68889999998754222     22334334            35789999998654  5666678999999987532110


Q ss_pred             -----------------------------------EEe-cccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeee-
Q psy17243         62 -----------------------------------STF-KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY-  104 (392)
Q Consensus        62 -----------------------------------~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-  104 (392)
                                                         +.+ ..|.--|+++.++.|...++++. |=.|.+|+++-...-. 
T Consensus       122 ~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFn  200 (433)
T KOG1354|consen  122 KEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFN  200 (433)
T ss_pred             cccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeeccccccCCcee
Confidence                                               001 24677799999999988887764 6779999887432211 


Q ss_pred             ----------ecccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCC-------------cceeeeccccceEEEEE
Q psy17243        105 ----------SALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKD-------------DERFTVSHSEEITCFTV  160 (392)
Q Consensus       105 ----------~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~-------------~~~~~~~~~~~v~~~~~  160 (392)
                                .+..-+++..|+| ..+.++-.+..|.|++-|++......             ...+..+--..|..+.|
T Consensus       201 IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKF  280 (433)
T KOG1354|consen  201 IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKF  280 (433)
T ss_pred             EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEE
Confidence                      1223456788888 45678888889999999998421110             01111123356888999


Q ss_pred             EcCCCEEEEeeCCCcEEEEEc-CCCeEEEEEecCC------------Cce---eEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        161 TWDSQYLITGSRDMSLKVWQV-VGGKLAQVLVGHT------------DHV---SCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       161 ~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~------------~~v---~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      +++|+|+++-+. -+|++||+ ...+++..++-|.            +.|   ..++|+ .++..+++|+....++++++
T Consensus       281 s~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s-g~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  281 SHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS-GNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             ccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc-CCcceEecccccceEEEecC
Confidence            999999998754 58999999 4567777776553            122   346788 77789999999999999997


Q ss_pred             CCCce
Q psy17243        225 ETGGE  229 (392)
Q Consensus       225 ~~~~~  229 (392)
                      ..|..
T Consensus       359 ~~gsk  363 (433)
T KOG1354|consen  359 ARGSK  363 (433)
T ss_pred             CCCcc
Confidence            66543

>KOG4547|consensus

Probab=99.37  E-value=5.5e-10  Score=96.78  Aligned_cols=176  Identities=10%  Similarity=0.191  Sum_probs=141.4

Q ss_pred             ccCCeEEEEECCCccceeeecc---CCcCeeEEEec--------------------CCCCeEEEEeCCCeEEEEeCCCCc
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEG---HLNTVSCVAIS--------------------PNSIFAVSGSEDNTAKVWGLTLGS   59 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~--------------------~~~~~l~~~~~dg~v~iwd~~~~~   59 (392)
                      ..||.+++|++..+++...+..   -.+..++..|.                    .+...++-|...|.|.+|++..++
T Consensus        12 ~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~   91 (541)
T KOG4547|consen   12 TGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGE   91 (541)
T ss_pred             CCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCe
Confidence            5789999999999888777653   23444555552                    123467888889999999999999


Q ss_pred             eeEEec--ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEE
Q psy17243         60 VVSTFK--SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIW  134 (392)
Q Consensus        60 ~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~  134 (392)
                      ....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+....+.+.....   .+..++++||+..+++++  +.|++|
T Consensus        92 it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~  169 (541)
T KOG4547|consen   92 ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVL  169 (541)
T ss_pred             EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEE
Confidence            887776  6899999999999999999999999999999999988766543   567899999999999886  689999


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcC-----CCEEEEee-CCCcEEEEEcCC
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWD-----SQYLITGS-RDMSLKVWQVVG  183 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~dg~i~i~d~~~  183 (392)
                      |++   .+.....+.+|.++|+++.|..+     |.+++++. .+..+.+|-+..
T Consensus       170 ~~~---~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  170 DIE---TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Ecc---CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            998   55667777899999999999877     66766654 355677776644

>KOG0280|consensus

Probab=99.36  E-value=2e-10  Score=90.98  Aligned_cols=249  Identities=10%  Similarity=0.032  Sum_probs=167.9

Q ss_pred             cCCeEEEEECCCcccee--ee-ccCCcCeeEEEecC---CCC-eEEEEeCCCeEEEEeCCCCceeEEecccc------cc
Q psy17243          4 MDCLVNVWQMNSHELQS--TM-EGHLNTVSCVAISP---NSI-FAVSGSEDNTAKVWGLTLGSVVSTFKSHQ------ST   70 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~--~~-~~h~~~v~~~~~~~---~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~   70 (392)
                      ..|.+.+|++...+...  ++ ....+.+..|.|.-   ++. .++-+...|.|.++..........+.+-.      ..
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            35788999988766554  11 22446677788864   444 46667778999999876554444443321      12


Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEEcCCc-----eeeeecccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         71 ILAVAVLSDSRRVVTSDKAGVIAVWVADNA-----QLLYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        71 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      ..++.|++.+..++++..+|.+.+-+....     +..+.+.-+.....|+. +.+.+++|+.|+.+..||++... ...
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i  202 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFI  202 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-cee
Confidence            467889999999999999999886554433     33444555666666654 45789999999999999998332 222


Q ss_pred             ceeeeccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCC-CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEE
Q psy17243        145 ERFTVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVG-GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVW  222 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  222 (392)
                      ......|...|.+|.-+|. +.++++|+.|-.|++||.++ ++++..-. -.+.|..+.++|.....++.++.-+-.+|-
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~  281 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKIL  281 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEE
Confidence            2323468889999988764 77999999999999999984 56665433 458899999997666555555555567777


Q ss_pred             ECCCCce-----eeeecccccceeEEEEcCCCeEEEE
Q psy17243        223 DMETGGE-----EHFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       223 d~~~~~~-----~~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                      +.+.+..     ....+.|.+-+..-.|..-..++++
T Consensus       282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lAT  318 (339)
T KOG0280|consen  282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLAT  318 (339)
T ss_pred             Eecccccchheeeeccccccceeeccccccccceeee
Confidence            7665432     2344556655555556333344555

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=6.1e-10  Score=99.39  Aligned_cols=205  Identities=13%  Similarity=0.075  Sum_probs=126.4

Q ss_pred             CeEEEEeCCCCceeEEecccccceEEEEEecCCCEE---EEEeCCC--eEEEEEcCCcee--eeecccceeEEEEeCCCC
Q psy17243         48 NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV---VTSDKAG--VIAVWVADNAQL--LYSALGPSKCLTVTHNMK  120 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d~--~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~  120 (392)
                      ..|.+.|.+.+.. ..+......+.+-.|+|||+.+   ++...++  .|.+.++.+++.  +....+......|+|||+
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence            3677777665543 3444455667788999999752   2444443  577778887753  444555666789999999


Q ss_pred             EEEEecC-CC----cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee-CCCcEEEE--EcCC-CeEEEEEe
Q psy17243        121 YIVSGDG-DN----SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVW--QVVG-GKLAQVLV  191 (392)
Q Consensus       121 ~l~~~~~-d~----~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~--d~~~-~~~~~~~~  191 (392)
                      .|+.... +|    .+..|++..+...................+|+|||+.|+..+ .+|...+|  ++.. +.....+.
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt  323 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT  323 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence            8887653 22    344466653321222222222223345679999999877665 45654555  4432 23344455


Q ss_pred             cCCCceeEEEEecCCCcEEE-EecCC--CeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        192 GHTDHVSCVAVAVTNKSLVV-SGSKD--SNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       192 ~~~~~v~~~~~~~~~~~~l~-~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      .+...+....|+| +++.|+ +...+  ..|.+||+.+++... +......+....|+|||+.++..
T Consensus       324 ~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        324 KKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             cCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEE
Confidence            4555677889995 555554 44333  469999999887643 33233456789999999988764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.36  E-value=1.8e-09  Score=88.44  Aligned_cols=208  Identities=15%  Similarity=0.218  Sum_probs=140.1

Q ss_pred             CCeEEEEeCCCCc--e-eEEecccccceEEEEEecCCCEEEEEeCC---CeEEEEEcCC--ceeee----eccc-ceeEE
Q psy17243         47 DNTAKVWGLTLGS--V-VSTFKSHQSTILAVAVLSDSRRVVTSDKA---GVIAVWVADN--AQLLY----SALG-PSKCL  113 (392)
Q Consensus        47 dg~v~iwd~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~--~~~~~----~~~~-~~~~~  113 (392)
                      +.-|.+|++++..  . ...+-...+..+-|+|+|+.+.|.++..+   |.|..|.++.  |++..    ...+ +...+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            4669999987332  1 11222356778999999999999888654   6777776664  54432    1222 33779


Q ss_pred             EEeCCCCEEEEecC-CCcEEEEeCCCCCCCCcceeeeccccc----------eEEEEEEcCCCEEEEeeC-CCcEEEEEc
Q psy17243        114 TVTHNMKYIVSGDG-DNSLRIWPTSPQTHKDDERFTVSHSEE----------ITCFTVTWDSQYLITGSR-DMSLKVWQV  181 (392)
Q Consensus       114 ~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~i~d~  181 (392)
                      ++++++++++++.. .|.|.++-++.............|...          +....+.|++++|++.+- --.|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999998888754 689999988754333333223334444          788899999999998764 347999999


Q ss_pred             CCCeEEEEEe---cCCCceeEEEEecCCCcEEEEec-CCCeEEEEECCCC-ceeeeeccc---------ccceeEEEEcC
Q psy17243        182 VGGKLAQVLV---GHTDHVSCVAVAVTNKSLVVSGS-KDSNLIVWDMETG-GEEHFLAGH---------LGCVTCVKLAG  247 (392)
Q Consensus       182 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~---------~~~v~~~~~~~  247 (392)
                      ..++....-.   ........|.|+ +++++....+ .+++|.+|..+.. ..+..++.+         ......+..++
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence            9776433211   234566889999 5666655544 5999999998873 233333221         23567888999


Q ss_pred             CCeEEEEc
Q psy17243        248 DGTVAMSD  255 (392)
Q Consensus       248 dg~~~~~~  255 (392)
                      ||++|...
T Consensus       254 dGrFLYas  261 (346)
T COG2706         254 DGRFLYAS  261 (346)
T ss_pred             CCCEEEEe
Confidence            99999875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=6.2e-10  Score=100.18  Aligned_cols=200  Identities=14%  Similarity=0.071  Sum_probs=125.6

Q ss_pred             eEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC---CeEEEEEcCCcee--eeecccceeEEEEeCCCCEEE
Q psy17243         49 TAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA---GVIAVWVADNAQL--LYSALGPSKCLTVTHNMKYIV  123 (392)
Q Consensus        49 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~l~  123 (392)
                      .|.++|.+.... +.+..+...+.+..|+|||+.|+..+.+   ..|++||+.+++.  +....+......|+|+++.|+
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence            577778655443 4444567788999999999988876543   3688899988764  333344455789999999887


Q ss_pred             E-ecCCCc--EEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-CC--cEEEEEcCCCeEEEEEecCCCce
Q psy17243        124 S-GDGDNS--LRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DM--SLKVWQVVGGKLAQVLVGHTDHV  197 (392)
Q Consensus       124 ~-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v  197 (392)
                      . ...++.  |+++|+.++..    .....+.......+|+||++.|+..+. ++  .|+++|+.+++... +.......
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~~----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~  352 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKAL----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQN  352 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCCe----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCC
Confidence            5 455564  77778764322    112223345567889999998876553 33  57777887776433 22222233


Q ss_pred             eEEEEecCCCcEEEEecCCC--eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        198 SCVAVAVTNKSLVVSGSKDS--NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       198 ~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ...+|+|++..++++...++  .|.++|+.+++... +... .......|+|||+.++...
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~  411 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYST  411 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEE
Confidence            45689954444444444444  45667888776432 2222 1223458999999888754

>KOG0974|consensus

Probab=99.35  E-value=3.2e-11  Score=110.79  Aligned_cols=177  Identities=18%  Similarity=0.252  Sum_probs=139.1

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcC----eeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEe
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNT----VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVL   77 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~   77 (392)
                      ++.++.+.+||...+.....+......    ..-+.++++.-++++|+.-+.|.+|+....+....+.+|++.|.++.++
T Consensus       105 ~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s  184 (967)
T KOG0974|consen  105 VTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTS  184 (967)
T ss_pred             EEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEc
Confidence            356778888998877766666532221    1223346667799999999999999987444444688999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCceeee----ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecccc
Q psy17243         78 SDSRRVVTSDKAGVIAVWVADNAQLLY----SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        78 ~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      .+|.++++.++|..+++|++++.+.+.    .+...+..+++.|+  .+++++.|-+.++|+......   ..+......
T Consensus       185 ~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l---~~y~~h~g~  259 (967)
T KOG0974|consen  185 LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQL---EVYDEHSGK  259 (967)
T ss_pred             cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccccee---hhhhhhhhc
Confidence            999999999999999999999988765    44556778888888  999999999999997653222   233333456


Q ss_pred             ceEEEEEEcCCCEEEEeeCCCcEEEEEcCC
Q psy17243        154 EITCFTVTWDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                      .+..++..++...+++++.|+.+++||+..
T Consensus       260 ~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  260 GIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            789999999999999999999999999854

>KOG2041|consensus

Probab=99.32  E-value=1.1e-10  Score=103.38  Aligned_cols=229  Identities=12%  Similarity=0.125  Sum_probs=167.5

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc---------------eeEEecccccceEEEEEecCCCEEEEEeCC
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS---------------VVSTFKSHQSTILAVAVLSDSRRVVTSDKA   89 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   89 (392)
                      ......|+.|+.+..++++|+.||.+++..+.+..               .-+++.+|+..|.-+.|+.+.+.|-+...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            34567899999999999999999999999876431               235677999999999999999999999999


Q ss_pred             CeEEEEEcCCceeee-----ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCC
Q psy17243         90 GVIAVWVADNAQLLY-----SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS  164 (392)
Q Consensus        90 ~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (392)
                      |.|.+|-+-++.-..     ..+.-+.+++|+.+|..+.....||.|.+=.+......... .   .......+.|++|.
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKe-L---kg~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKE-L---KGQLLAHVLWSEDL  168 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchh-c---chheccceeecccH
Confidence            999999988775432     23346789999999999999999999987666533222111 0   11223467799999


Q ss_pred             CEEEEeeCCCcEEEEEcCCC-------eEEEE----EecCCCceeEEEE-------ecCCCcEEEEecCCCeEEEEECCC
Q psy17243        165 QYLITGSRDMSLKVWQVVGG-------KLAQV----LVGHTDHVSCVAV-------AVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       165 ~~l~~~~~dg~i~i~d~~~~-------~~~~~----~~~~~~~v~~~~~-------~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      +.++.+-.+|.+.+||....       .+...    +......|..+.|       .||+...|+.+-.+|.+.|..-.+
T Consensus       169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence            98888888999999997532       11111    1112223445555       346778899999999999886554


Q ss_pred             CceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        227 GGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       227 ~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      ......+. ..-.+..+.|+++|.+++....+
T Consensus       249 D~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  249 DPEPVVVD-TGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             CCCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence            43333332 23678899999999999987654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.32  E-value=1.1e-09  Score=97.03  Aligned_cols=239  Identities=10%  Similarity=-0.021  Sum_probs=148.3

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccce-----EEEEE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTI-----LAVAV   76 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~   76 (392)
                      ++.+|.+..+|.++|+.+...... ..+.+.-.. .+..++.++.+|.|..||.++|+.+-++......+     .+...
T Consensus       111 ~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~  188 (377)
T TIGR03300       111 GTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI  188 (377)
T ss_pred             EcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE
Confidence            466788888888888887665432 222211111 23456777789999999999998877665432211     11122


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCceeeeecccce----------eEEEEeC--CCCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         77 LSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS----------KCLTVTH--NMKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        77 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      .  +..++.+..++.+..+|+++++.+.......          ..+.-+|  .+..+++++.+|.++.||..+++..- 
T Consensus       189 ~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W-  265 (377)
T TIGR03300       189 A--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW-  265 (377)
T ss_pred             E--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE-
Confidence            2  2467788889999999999998765432110          0011111  35678888889999999997553221 


Q ss_pred             ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCC-ceeEEEEecCCCcEEEEecCCCeEEEEE
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTD-HVSCVAVAVTNKSLVVSGSKDSNLIVWD  223 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd  223 (392)
                         ..... ......  ..+..+++++.+|.+..+|..+++.+........ ........   +..+++++.+|.|+++|
T Consensus       266 ---~~~~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       266 ---KRDAS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             ---eeccC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEEEEEeCCCEEEEEE
Confidence               11111 111222  2467888888999999999999987765532111 22222222   45778889999999999


Q ss_pred             CCCCceeeeecccccceeEEEEcCCCeEEEE
Q psy17243        224 METGGEEHFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       224 ~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                      ..+++.+..++.+...+..--...++++++.
T Consensus       337 ~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~  367 (377)
T TIGR03300       337 REDGSFVARLKTDGSGIASPPVVVGDGLLVQ  367 (377)
T ss_pred             CCCCCEEEEEEcCCCccccCCEEECCEEEEE
Confidence            9999999888766544333222234444443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912|consensus

Probab=99.31  E-value=1.4e-09  Score=97.38  Aligned_cols=132  Identities=14%  Similarity=0.213  Sum_probs=104.5

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCC------------CeEEEEeCCCeEEEEeCCCCceeEEecccccceE
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNS------------IFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTIL   72 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~   72 (392)
                      ...|.|-|..+.+.++.+.-|...|+.+.|.|-.            -+||++...|.|.+||...+..+..+..|..++.
T Consensus        34 hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~q  113 (1062)
T KOG1912|consen   34 HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQ  113 (1062)
T ss_pred             CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchh
Confidence            4568888999999999999999999999998731            2577888889999999999999999999999999


Q ss_pred             EEEEecC---C-CEEEEEeCCCeEEEEEcCCceeeeeccc---ceeEEEEeC-CCCEEEEecCCCcEEEEeC
Q psy17243         73 AVAVLSD---S-RRVVTSDKAGVIAVWVADNAQLLYSALG---PSKCLTVTH-NMKYIVSGDGDNSLRIWPT  136 (392)
Q Consensus        73 ~~~~~~~---~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~-~~~~l~~~~~d~~i~~~d~  136 (392)
                      .++|.+.   . ..|++-.....+.+|+..+|+.+..+.-   ...|+.+.| +.+.+..-+..|.+.+-+.
T Consensus       114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            9999764   3 4677777888999999999998876543   335677777 5555655556666555443

>KOG4532|consensus

Probab=99.31  E-value=1.2e-09  Score=85.62  Aligned_cols=215  Identities=6%  Similarity=-0.017  Sum_probs=144.0

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCce-eEEecccccceEEEE-EecCCCEEEEEeCCCeEEEEEcCCceee---eecccceeE
Q psy17243         38 SIFAVSGSEDNTAKVWGLTLGSV-VSTFKSHQSTILAVA-VLSDSRRVVTSDKAGVIAVWVADNAQLL---YSALGPSKC  112 (392)
Q Consensus        38 ~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~  112 (392)
                      ..+||.|+..|...+|...+.+. .+....|...|+-+. .......+..++.|.++++.+++.+...   +........
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            45899999999999999886543 233333443332221 1112335777888888888887755332   222234788


Q ss_pred             EEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEE----
Q psy17243        113 LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQ----  188 (392)
Q Consensus       113 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----  188 (392)
                      +.++++++++++.+....|..|.+..................--+..|+.....++++..||++.|||++......    
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s  243 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS  243 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence            9999999999999999999999887544333332333344455677899889999999999999999998754322    


Q ss_pred             -EEecCCCceeEEEEecCCC-cEEEEecCCCeEEEEECCCCceeeeeccc-------c-cceeEEEEcCCCeEE
Q psy17243        189 -VLVGHTDHVSCVAVAVTNK-SLVVSGSKDSNLIVWDMETGGEEHFLAGH-------L-GCVTCVKLAGDGTVA  252 (392)
Q Consensus       189 -~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~-~~v~~~~~~~dg~~~  252 (392)
                       +-..|.+.+..+.|++.+. .+|+-.-.-+.+.+.|+++++..+.+...       . ..|..-.|+.++.-.
T Consensus       244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~  317 (344)
T KOG4532|consen  244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESN  317 (344)
T ss_pred             ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccc
Confidence             2345889999999995332 34444455678999999998765544322       1 225555565555433

>KOG2041|consensus

Probab=99.31  E-value=1.1e-10  Score=103.39  Aligned_cols=255  Identities=14%  Similarity=0.175  Sum_probs=184.8

Q ss_pred             CCccCCeEEEEECCCc---------------cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec
Q psy17243          1 MGGMDCLVNVWQMNSH---------------ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK   65 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~   65 (392)
                      .||.||.++|..+.+.               ..-+++.+|+..|.-+.|+.+.+.|-+...+|.|.+|-+-.|+-...+.
T Consensus        31 cgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi  110 (1189)
T KOG2041|consen   31 CGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI  110 (1189)
T ss_pred             eccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh
Confidence            3789999999987532               1235678999999999999999999999999999999998887655443


Q ss_pred             c--cccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee-ccc-ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCC
Q psy17243         66 S--HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS-ALG-PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTH  141 (392)
Q Consensus        66 ~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  141 (392)
                      .  .++.|.+++|..+|..+.....||.|.+=.++..+.... +.+ ....+.|++|.+.++.+-.+|.+.+||......
T Consensus       111 NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~  190 (1189)
T KOG2041|consen  111 NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFE  190 (1189)
T ss_pred             hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHH
Confidence            2  456799999999999999999999998877776655332 222 334788999999999999999999999764321


Q ss_pred             CCcce--------eeeccccceEEEEEE--------cCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecC
Q psy17243        142 KDDER--------FTVSHSEEITCFTVT--------WDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT  205 (392)
Q Consensus       142 ~~~~~--------~~~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  205 (392)
                      .....        ........+..+.|.        |+...|+++-.+|.+.|..-.+......+. -...+....|+ +
T Consensus       191 ~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWn-h  268 (1189)
T KOG2041|consen  191 RKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWN-H  268 (1189)
T ss_pred             HhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceec-C
Confidence            11110        011122234455553        466789999999998887654433222232 23677888999 7


Q ss_pred             CCcEEEEecCC---------CeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        206 NKSLVVSGSKD---------SNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       206 ~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      ++.+|+.++.+         +.|.+|.. -|+.+.+++.....|++++|-..|-.++.+.+.
T Consensus       269 ~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avds  329 (1189)
T KOG2041|consen  269 NGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDS  329 (1189)
T ss_pred             CCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecc
Confidence            78888877654         25666654 377788888888899999999887777666443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.28  E-value=2.6e-09  Score=88.37  Aligned_cols=220  Identities=14%  Similarity=0.085  Sum_probs=139.7

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEE--ecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVA--ISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      .+|.|..||..+++.+....- ...+....  ..+++.++++++.++.|..||..+|+.+.++.. ...+.... ...+.
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            478999999999999988753 21122222  333556777888999999999999998877764 22221112 23456


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeeec-ccc------eeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecc-cc
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLYSA-LGP------SKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH-SE  153 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~~~-~~~------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~  153 (392)
                      .+++++.++.++.+|..+++.+... ...      .........+..++++..++.|..+|+++++..-........ ..
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~  157 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS  157 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence            7777778889999999999988773 221      122233334788889888999999999866443222221101 01


Q ss_pred             ------ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        154 ------EITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       154 ------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                            .+..-....++ .++.+..++.+..+|+.+++.+....  ...+..+ .. ..+..|+.++.++.|..||++++
T Consensus       158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~-~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PS-VDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EE-CCCTEEEEEETTTEEEEEETTTT
T ss_pred             ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ce-eeCCEEEEEeCCCEEEEEECCCC
Confidence                  11122222234 77777777764444999998664332  2333331 23 34556666668999999999999


Q ss_pred             ceee
Q psy17243        228 GEEH  231 (392)
Q Consensus       228 ~~~~  231 (392)
                      +.+.
T Consensus       233 ~~~W  236 (238)
T PF13360_consen  233 KVVW  236 (238)
T ss_dssp             EEEE
T ss_pred             CEEe
Confidence            8764

...

>KOG2314|consensus

Probab=99.28  E-value=1.9e-09  Score=92.79  Aligned_cols=241  Identities=12%  Similarity=0.136  Sum_probs=155.5

Q ss_pred             EEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeC-----------CCeEEEEeCCCCceeEEecccc--cce-EE
Q psy17243          8 VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSE-----------DNTAKVWGLTLGSVVSTFKSHQ--STI-LA   73 (392)
Q Consensus         8 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~--~~v-~~   73 (392)
                      |.+|--++...++.+. |. .|.-+.|||+.+||+|-+.           ...++|||+.+|...+.+....  ..+ .-
T Consensus       233 I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~  310 (698)
T KOG2314|consen  233 IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPI  310 (698)
T ss_pred             eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccce
Confidence            6677767777777775 65 4889999999999998653           2579999999999988887532  223 34


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCC-----CcEEEEeCCCCCCCCcc
Q psy17243         74 VAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGD-----NSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~  145 (392)
                      +.|+.|+++++--.. ..|.||+..+..++...   ...+....|+|.++.||--...     ..+.+..+.+.   ..+
T Consensus       311 frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~---~~i  386 (698)
T KOG2314|consen  311 FRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSK---REI  386 (698)
T ss_pred             EEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcc---cee
Confidence            689999999887665 56899988775554322   2356788999998888765432     23444444322   122


Q ss_pred             eeeeccccceEEEEEEcCCCEEEEee----------CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecC
Q psy17243        146 RFTVSHSEEITCFTVTWDSQYLITGS----------RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK  215 (392)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  215 (392)
                      +...-++-.=..+.|..+|.+|+.--          .-..+.|+.++..........-...|...+|-|.++.+.+..+.
T Consensus       387 Rt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~  466 (698)
T KOG2314|consen  387 RTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN  466 (698)
T ss_pred             eeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc
Confidence            21111222223455666788776532          12245666666554332223356788899999766666555443


Q ss_pred             --CCeEEEEECCC-Cc---eeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        216 --DSNLIVWDMET-GG---EEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       216 --dg~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                        ..++.+|.+++ ..   .+..+.  ....+.+.|+|.|++++.+.
T Consensus       467 ~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~  511 (698)
T KOG2314|consen  467 TVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAA  511 (698)
T ss_pred             ccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEE
Confidence              35688998873 22   233332  24678899999999998864

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.27  E-value=2.6e-08  Score=88.35  Aligned_cols=219  Identities=12%  Similarity=0.070  Sum_probs=141.5

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      ++.+|.|..+|..+|+.+....-..........  ++..++.++.+|.+..+|.++|+.+-..... ..+.+.... .+.
T Consensus        71 ~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~  146 (377)
T TIGR03300        71 ADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANG  146 (377)
T ss_pred             ECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECC
Confidence            567889999999999988776543322222222  4567888889999999999999988766532 223221111 245


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeeeccccee--------EEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc-
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLYSALGPSK--------CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS-  152 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-  152 (392)
                      .++.++.++.++.+|.++++.+.+......        ....  .+..++++..++.+..+|.++++..-......... 
T Consensus       147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~  224 (377)
T TIGR03300       147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR  224 (377)
T ss_pred             EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence            777888899999999999988766543221        1111  22467788888999999987654322111100000 


Q ss_pred             c---c---e-EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        153 E---E---I-TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       153 ~---~---v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      .   .   + ....+  .+..+++++.+|.++.||..+++.+..... . .......   .+..++.++.+|.|..+|..
T Consensus       225 ~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~~---~~~~vyv~~~~G~l~~~d~~  297 (377)
T TIGR03300       225 TELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPAV---DDNRLYVTDADGVVVALDRR  297 (377)
T ss_pred             CchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCceE---eCCEEEEECCCCeEEEEECC
Confidence            0   0   0 01111  255788888899999999999987765542 1 1222222   24566667789999999999


Q ss_pred             CCceeeee
Q psy17243        226 TGGEEHFL  233 (392)
Q Consensus       226 ~~~~~~~~  233 (392)
                      +++.+...
T Consensus       298 tG~~~W~~  305 (377)
T TIGR03300       298 SGSELWKN  305 (377)
T ss_pred             CCcEEEcc
Confidence            99877655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1409|consensus

Probab=99.26  E-value=2.5e-09  Score=86.79  Aligned_cols=239  Identities=21%  Similarity=0.327  Sum_probs=169.2

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeC-CCCceeEEec-ccccceEEEEEecCCCEEEEEeCCCeEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGL-TLGSVVSTFK-SHQSTILAVAVLSDSRRVVTSDKAGVIA   93 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~   93 (392)
                      ..+++.++||.+.|+....-|...-+++.+.|.+++||-- +.++.-..+. ....+++++.+.++...|+++-..|++.
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            4566778999999999999998788999999999999953 4455443333 3467899999999999999999999999


Q ss_pred             EEEcCC----ceeee---ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCE
Q psy17243         94 VWVADN----AQLLY---SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY  166 (392)
Q Consensus        94 iwd~~~----~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (392)
                      -+.+..    ...++   .+...+..+.++....++++.+.|..+.---.+.+.........    ...+++.+.-.  +
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~----~~~t~~~~d~~--~  167 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE----TPASALQFDAL--Y  167 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee----ccCCCCceeeE--E
Confidence            886542    22222   34457778888888889999999887754333322222211111    11111222111  6


Q ss_pred             EEEeeCCCcEEEEEc--CCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee-eeecccccceeEE
Q psy17243        167 LITGSRDMSLKVWQV--VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE-HFLAGHLGCVTCV  243 (392)
Q Consensus       167 l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~  243 (392)
                      .+.|...|.|....+  ....++..+.+|.+.+++++|. +.+.+|.+|..|..+.+||+.-.+-+ ..+.+|...|..+
T Consensus       168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL  246 (404)
T ss_pred             EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence            667777777766555  3456788899999999999999 77889999999999999999865533 4667787766654


Q ss_pred             E----------EcCCCeEEEEcCCCCCC
Q psy17243        244 K----------LAGDGTVAMSDLPPSRP  261 (392)
Q Consensus       244 ~----------~~~dg~~~~~~~~~~~~  261 (392)
                      .          ...||.+.+|..+-.+.
T Consensus       247 ~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  247 SYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             hhhhhheeeeeccCCCeEEEEeccceee
Confidence            3          34588888888765443

>KOG2315|consensus

Probab=99.25  E-value=4.1e-09  Score=90.93  Aligned_cols=241  Identities=10%  Similarity=0.080  Sum_probs=160.6

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC--EE
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR--RV   83 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l   83 (392)
                      -.+.+|+++++.....+......=++..|++|..+.+- -..+.+.+|++.+.+.+.. +-|...|..+.++|.+.  .+
T Consensus       105 pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~v  182 (566)
T KOG2315|consen  105 PNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFV  182 (566)
T ss_pred             CceeeeeeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceE
Confidence            45789999987666666543333368999998764332 2356799999887544332 23678899999998743  33


Q ss_pred             EE-----EeCCCeEEEEEcCCceee-----eec-ccceeEEEEeCCCCEEEE-ec-----------CCCcEEEEeCCCCC
Q psy17243         84 VT-----SDKAGVIAVWVADNAQLL-----YSA-LGPSKCLTVTHNMKYIVS-GD-----------GDNSLRIWPTSPQT  140 (392)
Q Consensus        84 ~~-----~~~d~~i~iwd~~~~~~~-----~~~-~~~~~~~~~~~~~~~l~~-~~-----------~d~~i~~~d~~~~~  140 (392)
                      ++     .+.-+.++||.......-     +.+ ...--.+.|++.+.-|++ ++           .+..++++++.   
T Consensus       183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~---  259 (566)
T KOG2315|consen  183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ---  259 (566)
T ss_pred             EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec---
Confidence            32     244567999977632221     111 123345677776653332 21           23467777775   


Q ss_pred             CCCcceeeeccccceEEEEEEcCCCEEEEe--eCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecC---
Q psy17243        141 HKDDERFTVSHSEEITCFTVTWDSQYLITG--SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK---  215 (392)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---  215 (392)
                       ...........++|.++.|+|+++-++++  -.-..+.|||++ +.++..+  -.++=+++-|+ +.+++++.++-   
T Consensus       260 -g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fn-p~g~ii~lAGFGNL  334 (566)
T KOG2315|consen  260 -GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFN-PHGNIILLAGFGNL  334 (566)
T ss_pred             -CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEEC-CCCCEEEEeecCCC
Confidence             23334444568999999999999876654  456789999976 5666665  35677889999 55566555543   


Q ss_pred             CCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        216 DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      -|.|-|||+.+.+++..+...  .-+-+.|+|||++++++.-.
T Consensus       335 ~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  335 PGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             CCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEecc
Confidence            488999999998888887654  34567899999999998643

>KOG1064|consensus

Probab=99.23  E-value=5.5e-11  Score=114.94  Aligned_cols=175  Identities=13%  Similarity=0.234  Sum_probs=139.8

Q ss_pred             CCccCCeEEEEECCCccceeeecc-CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEG-HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      ||+.||.|++|....++.+..++. ..+.|+.+.|+.+|+.+..+..||.+.+|... .+.....+.|+.....+.|.. 
T Consensus      2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~- 2302 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG- 2302 (2439)
T ss_pred             ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-
Confidence            689999999999988887777643 44889999999999999999999999999977 677778888999999999975 


Q ss_pred             CCEEEEEe---CCCeEEEEEcCCce---ee-eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc
Q psy17243         80 SRRVVTSD---KAGVIAVWVADNAQ---LL-YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS  152 (392)
Q Consensus        80 ~~~l~~~~---~d~~i~iwd~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  152 (392)
                       ..+++++   .++.+.+||..-..   .+ ..+.+.++++++.|..+.|++|+.+|.|.+||++..+.   .     |.
T Consensus      2303 -s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql---~-----h~ 2373 (2439)
T KOG1064|consen 2303 -SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL---R-----HT 2373 (2439)
T ss_pred             -hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH---H-----HH
Confidence             5666654   46889999965432   22 34567889999999999999999999999999973222   1     11


Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV  191 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  191 (392)
                      -+.    +. ...++++|+..|.++||++.....++.+.
T Consensus      2374 ~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2374 FQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             hhh----hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            111    33 46689999999999999998887776654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=3.3e-08  Score=87.83  Aligned_cols=210  Identities=10%  Similarity=0.014  Sum_probs=127.5

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCe-EEEEeC---CCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIF-AVSGSE---DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      ..|.+=|.... ..+.+.... .+....|+|+|+. ++..+.   +..|.++|+.+++...... ..+......|+|||+
T Consensus       169 ~~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            34555554433 334343333 7789999999984 554433   3569999998887655443 455566788999998


Q ss_pred             EEEEE-eCC--CeEEEEEcCCceeeeec--ccceeEEEEeCCCCEEEEecC-CC--cEEEEeCCCCCCCCcceeeecccc
Q psy17243         82 RVVTS-DKA--GVIAVWVADNAQLLYSA--LGPSKCLTVTHNMKYIVSGDG-DN--SLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        82 ~l~~~-~~d--~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      .++.. +.+  ..|.++|+.+++...-.  ........|+|||+.|+..+. .+  .|.++|+.++.....   ..... 
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl---t~~g~-  321 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV---VFHGK-  321 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC---ccCCC-
Confidence            77654 333  46888898777643322  222345689999998877664 23  577777764433221   11111 


Q ss_pred             ceEEEEEEcCCCEEEEeeCC---------CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC--eEEEE
Q psy17243        154 EITCFTVTWDSQYLITGSRD---------MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS--NLIVW  222 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iw  222 (392)
                      .  ...|+|+|++|+.....         ..|.+.|+.++.. +.+... .......|+|++..++++....+  .+.+.
T Consensus       322 ~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~  397 (419)
T PRK04043        322 N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGII  397 (419)
T ss_pred             c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence            1  24899999988776643         3688889887764 334322 23335789954444444443333  36666


Q ss_pred             ECCC
Q psy17243        223 DMET  226 (392)
Q Consensus       223 d~~~  226 (392)
                      ++..
T Consensus       398 ~l~g  401 (419)
T PRK04043        398 RLNY  401 (419)
T ss_pred             ecCC
Confidence            7653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.20  E-value=2.2e-08  Score=96.84  Aligned_cols=228  Identities=13%  Similarity=0.152  Sum_probs=149.2

Q ss_pred             cCeeEEEecCCCCe--EEEEeCCC--eEEEEeCCCCc---eeEEec-----ccccceEEEEEecCCCEEEEEeCCCeEEE
Q psy17243         27 NTVSCVAISPNSIF--AVSGSEDN--TAKVWGLTLGS---VVSTFK-----SHQSTILAVAVLSDSRRVVTSDKAGVIAV   94 (392)
Q Consensus        27 ~~v~~~~~~~~~~~--l~~~~~dg--~v~iwd~~~~~---~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   94 (392)
                      ..+...+|.+....  ++++....  .|.+-......   .+..+.     .....|.++.+.++...++.+..+|.|.+
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            45777788775543  33333332  24444333222   233332     23467999999999999999999999999


Q ss_pred             E----EcCCc--eeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCC-----------------------CCC----
Q psy17243         95 W----VADNA--QLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSP-----------------------QTH----  141 (392)
Q Consensus        95 w----d~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~-----------------------~~~----  141 (392)
                      .    +..+.  +.+......+.+++|+||+..|+..+.++++.+..-.-                       ++.    
T Consensus       102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF  181 (928)
T PF04762_consen  102 VREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQF  181 (928)
T ss_pred             EEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCcc
Confidence            9    55444  55678888999999999999999999999887764310                       000    


Q ss_pred             -----CC------ccee------eeccccceEEEEEEcCCCEEEEeeC---C---CcEEEEEcCCCeEEEEEecCCCcee
Q psy17243        142 -----KD------DERF------TVSHSEEITCFTVTWDSQYLITGSR---D---MSLKVWQVVGGKLAQVLVGHTDHVS  198 (392)
Q Consensus       142 -----~~------~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~v~  198 (392)
                           +.      ....      .......-..++|-.||.++++.+-   .   ..++||+- .|.....-..-.+--.
T Consensus       182 ~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~  260 (928)
T PF04762_consen  182 HGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEG  260 (928)
T ss_pred             CcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccC
Confidence                 00      0000      0002335567889999999998874   2   57899994 4664444333333345


Q ss_pred             EEEEecCCCcEEEEecC---CCeEEEEECCCCceeeeec----ccccceeEEEEcCCCeEEEEcCC
Q psy17243        199 CVAVAVTNKSLVVSGSK---DSNLIVWDMETGGEEHFLA----GHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       199 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      +++|. |.++++++.-.   ...|.+|.- +|-.-..|.    .....|..+.|++|+.+|+.-..
T Consensus       261 ~l~Wr-PsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~  324 (928)
T PF04762_consen  261 ALSWR-PSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE  324 (928)
T ss_pred             CccCC-CCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence            78999 67788887654   345777764 343333322    34568999999999999998663

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.20  E-value=7.8e-08  Score=81.71  Aligned_cols=105  Identities=16%  Similarity=0.236  Sum_probs=85.5

Q ss_pred             cccceEEEEEEcCCCEEEEeeCCC-cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        151 HSEEITCFTVTWDSQYLITGSRDM-SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      +...|.-..+..+++-++.|..|| .+-|||.++++. +.+...-+.|.++..+ +++.+++.+.....|.+.|++++..
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs-~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVS-PDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEc-CCCcEEEEEcCceEEEEEEecCCCe
Confidence            444455555666677788888888 899999887764 4445567889999999 7888889898889999999999998


Q ss_pred             eeeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        230 EHFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       230 ~~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      ...-+...+-|+.+.|+|++++++.+.+
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYafP  463 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYAFP  463 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEecC
Confidence            7766667789999999999999999875

>KOG1832|consensus

Probab=99.20  E-value=1.1e-11  Score=111.98  Aligned_cols=227  Identities=17%  Similarity=0.205  Sum_probs=166.2

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCC--eEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG--VIA   93 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~   93 (392)
                      .+..+.+..|+...+|++|+-+.++|+.|+..|.|+++++.+|.......+|.++|+.+.-+.+|..+++.+...  ...
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            445567788999999999999999999999999999999999999999999999999999999998777655433  578


Q ss_pred             EEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc-ceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243         94 VWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD-ERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus        94 iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      +|++.+---.......-.++.|+.....-+.|+......+||+.+...... +.-.......-++..|+|+..+++   .
T Consensus      1171 LW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---n 1247 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---N 1247 (1516)
T ss_pred             HhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---e
Confidence            899876322222223456788887766667777778899999986544332 111122233347788999988776   3


Q ss_pred             CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEE
Q psy17243        173 DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVA  252 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~  252 (392)
                      ||  .+||++..+.++.|...+..+.. .|+|. +..++.-+     .|||+++.+.++..+..  .-+.+.|+..|.++
T Consensus      1248 dG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~-g~eVIINS-----EIwD~RTF~lLh~VP~L--dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPS-GNEVIINS-----EIWDMRTFKLLHSVPSL--DQCAVTFNSTGDVM 1316 (1516)
T ss_pred             Cc--eeeeeccHHHHhhhhhheecccc-cccCC-CceEEeec-----hhhhhHHHHHHhcCccc--cceEEEeccCccch
Confidence            55  58999999888887655544333 58854 44444432     48999999988776643  33577899988887


Q ss_pred             EEcC
Q psy17243        253 MSDL  256 (392)
Q Consensus       253 ~~~~  256 (392)
                      ....
T Consensus      1317 Ya~~ 1320 (1516)
T KOG1832|consen 1317 YAML 1320 (1516)
T ss_pred             hhhh
Confidence            6654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.18  E-value=7e-08  Score=95.19  Aligned_cols=223  Identities=10%  Similarity=0.093  Sum_probs=145.3

Q ss_pred             cCCeEEEEECCCccceeeecc--------------CCcCeeEEEecCCCCeEEEEe-CCCeEEEEeCCCCceeEEeccc-
Q psy17243          4 MDCLVNVWQMNSHELQSTMEG--------------HLNTVSCVAISPNSIFAVSGS-EDNTAKVWGLTLGSVVSTFKSH-   67 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-   67 (392)
                      .++.|+++|.. ++.+..+.+              +-..-..+++.+++..|+.+. .++.|+++|+.++.. .++.+. 
T Consensus       588 ~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G  665 (1057)
T PLN02919        588 NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNG  665 (1057)
T ss_pred             CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccC
Confidence            45778888865 444433322              112357899999887665554 457899999877543 333110 


Q ss_pred             ----------------ccceEEEEEecC-CCEEEEEeCCCeEEEEEcCCceeeee--------c---------ccceeEE
Q psy17243         68 ----------------QSTILAVAVLSD-SRRVVTSDKAGVIAVWVADNAQLLYS--------A---------LGPSKCL  113 (392)
Q Consensus        68 ----------------~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~--------~---------~~~~~~~  113 (392)
                                      -..-..++++|+ +..+++...++.|++||..++.....        .         ......+
T Consensus       666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GI  745 (1057)
T PLN02919        666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGI  745 (1057)
T ss_pred             cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEE
Confidence                            012357899994 55566667788999999987654210        0         0123468


Q ss_pred             EEeCCCCEEEE-ecCCCcEEEEeCCCCCCCCcc---------eeeec---------cccceEEEEEEcCCCEEEEeeCCC
Q psy17243        114 TVTHNMKYIVS-GDGDNSLRIWPTSPQTHKDDE---------RFTVS---------HSEEITCFTVTWDSQYLITGSRDM  174 (392)
Q Consensus       114 ~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~---------~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg  174 (392)
                      +++|+++.|++ -..++.|++||+.++......         ....+         .-.....++++++|+++++-..++
T Consensus       746 avspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~  825 (1057)
T PLN02919        746 SLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH  825 (1057)
T ss_pred             EEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC
Confidence            99999985554 455789999998754311000         00000         011246789999999888888899


Q ss_pred             cEEEEEcCCCeEEEEEe-------------cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        175 SLKVWQVVGGKLAQVLV-------------GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       175 ~i~i~d~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      .|++||..++.......             +.-.....++++ ++++++++-+.++.|++||+.+++.
T Consensus       826 rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd-~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        826 KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALG-ENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEe-CCCCEEEEECCCCEEEEEECCCCcc
Confidence            99999998776543321             111246788998 6778888888999999999998764

>KOG3914|consensus

Probab=99.17  E-value=7.6e-10  Score=91.53  Aligned_cols=161  Identities=18%  Similarity=0.237  Sum_probs=117.4

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEEcCCcee----eee--cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         71 ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL----LYS--ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        71 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      ...+..++.+++++++..+....+++......    +..  .......+.+..+.....++..-|.++-+|+-+... ..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-cC
Confidence            44456677888888888888877776654432    222  222334566666666666666666666665543222 33


Q ss_pred             ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEE-ecCCCceeEEEEecCCCcEEEEecCCCeEEEEE
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL-VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD  223 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  223 (392)
                      .....+|-+.++.++++||+++++++..|..|++-.......+..+ .||+.-|..++.-  ++..|++++.|++|++||
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DNYLLLSGSGDKTLRLWD  221 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cCceeeecCCCCcEEEEe
Confidence            4445689999999999999999999999999999887766555554 5799999999986  456689999999999999


Q ss_pred             CCCCceeeeec
Q psy17243        224 METGGEEHFLA  234 (392)
Q Consensus       224 ~~~~~~~~~~~  234 (392)
                      +.+|+.+..+.
T Consensus       222 ~~sgk~L~t~d  232 (390)
T KOG3914|consen  222 ITSGKLLDTCD  232 (390)
T ss_pred             cccCCcccccc
Confidence            99999886554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.15  E-value=1e-06  Score=73.23  Aligned_cols=212  Identities=15%  Similarity=0.092  Sum_probs=138.5

Q ss_pred             EEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee--eec-
Q psy17243         31 CVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL--YSA-  106 (392)
Q Consensus        31 ~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~-  106 (392)
                      ++.|.+ ++.++++--..+.|..|+..+++... +....  ...+++...+..++.+...+ +.++|+.+++..  ... 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence            578888 67777777778999999988776543 22122  67778873335666666655 455598887543  222 


Q ss_pred             -----ccceeEEEEeCCCCEEEEecCC--------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEE-EeeC
Q psy17243        107 -----LGPSKCLTVTHNMKYIVSGDGD--------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI-TGSR  172 (392)
Q Consensus       107 -----~~~~~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~  172 (392)
                           ....+.+++.++|+..++....        |.|..++.. .    ........-...+.++|+|+++.|+ +-+.
T Consensus        80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~----~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G----KVTVVADGLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S----EEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred             CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C----eEEEEecCcccccceEECCcchheeecccc
Confidence                 1245689999999966665433        456667664 1    1222223345678999999998776 5566


Q ss_pred             CCcEEEEEcCCCe--E--EEEE---ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEE
Q psy17243        173 DMSLKVWQVVGGK--L--AQVL---VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKL  245 (392)
Q Consensus       173 dg~i~i~d~~~~~--~--~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  245 (392)
                      .+.|..|++....  .  ...+   ....+..-.+++. .++++.++....+.|.+++.+ |+.+..+......+++++|
T Consensus       155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            7889999985321  1  1222   2222247789998 678888887789999999987 8888877766568999999


Q ss_pred             c-CCCeEEE
Q psy17243        246 A-GDGTVAM  253 (392)
Q Consensus       246 ~-~dg~~~~  253 (392)
                      . ++.+.|.
T Consensus       233 gg~~~~~L~  241 (246)
T PF08450_consen  233 GGPDGKTLY  241 (246)
T ss_dssp             ESTTSSEEE
T ss_pred             ECCCCCEEE
Confidence            4 5644433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.14  E-value=2.8e-07  Score=76.51  Aligned_cols=202  Identities=14%  Similarity=0.080  Sum_probs=128.6

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEec-CCCCeEEEEeCCCeEEEEeCCCCceeEEecc-----cccceEEEEEec
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAIS-PNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS-----HQSTILAVAVLS   78 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~   78 (392)
                      .+.|..|+..+++... +....  ...+++. +++. |+.+...+ +.++|..+++.......     .....+.+++.|
T Consensus        21 ~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~   95 (246)
T PF08450_consen   21 GGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP   95 (246)
T ss_dssp             TTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T
T ss_pred             CCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC
Confidence            4566666665544322 22122  6677777 6655 45555544 56669988865443332     345688999999


Q ss_pred             CCCEEEEEeCC--------CeEEEEEcCCcee--eeecccceeEEEEeCCCCEEE-EecCCCcEEEEeCCCCCC-CCcce
Q psy17243         79 DSRRVVTSDKA--------GVIAVWVADNAQL--LYSALGPSKCLTVTHNMKYIV-SGDGDNSLRIWPTSPQTH-KDDER  146 (392)
Q Consensus        79 ~~~~l~~~~~d--------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~-~~~~~  146 (392)
                      +|+..++....        |.+..++.. ++.  +.......+.++|+|+++.|+ +-+..+.|..|++..... .....
T Consensus        96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~  174 (246)
T PF08450_consen   96 DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRR  174 (246)
T ss_dssp             TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeee
Confidence            99977776544        557777877 433  223334567999999999776 456678899999864333 11111


Q ss_pred             ee-e-cc-ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCC-CcEEEEe
Q psy17243        147 FT-V-SH-SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTN-KSLVVSG  213 (392)
Q Consensus       147 ~~-~-~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~  213 (392)
                      .. . .. ....-.+++..+|++.++....+.|.++|.. ++.+..+......+++++|.-++ ..++++.
T Consensus       175 ~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  175 VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            11 1 11 1247789999999888887788999999987 88888777655689999995344 4455543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532|consensus

Probab=99.14  E-value=2.2e-08  Score=78.69  Aligned_cols=190  Identities=12%  Similarity=0.002  Sum_probs=132.3

Q ss_pred             CCccCCeEEEEECCCccce-eeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEec
Q psy17243          1 MGGMDCLVNVWQMNSHELQ-STMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~   78 (392)
                      .||.-|...+|...+.+.. +....|...|+-+.=..+ .--+..++.|.++++.+++-+.....+....-.+.++.+++
T Consensus        89 ~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn  168 (344)
T KOG4532|consen   89 DGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN  168 (344)
T ss_pred             eccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcC
Confidence            3678889999998865543 333345554443322222 22466778899999998876654444432223488999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCcee--eeec----ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc--ceeeec
Q psy17243         79 DSRRVVTSDKAGVIAVWVADNAQL--LYSA----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD--ERFTVS  150 (392)
Q Consensus        79 ~~~~l~~~~~d~~i~iwd~~~~~~--~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~  150 (392)
                      +++.+++.+....|..|.+.....  +...    ..+.-+..|+.....+|++..||.+.+||++.......  ......
T Consensus       169 d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~  248 (344)
T KOG4532|consen  169 DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH  248 (344)
T ss_pred             CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCC
Confidence            999999999999999998865422  2211    22445888999999999999999999999986543322  122335


Q ss_pred             cccceEEEEEEcCCC--EEEEeeCCCcEEEEEcCCCeEEEEE
Q psy17243        151 HSEEITCFTVTWDSQ--YLITGSRDMSLKVWQVVGGKLAQVL  190 (392)
Q Consensus       151 ~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~  190 (392)
                      |.+.+..+.|++-|.  +|+..-.-+.+.+.|+++++..+.+
T Consensus       249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            889999999998653  5555555688999999998755544

>KOG1912|consensus

Probab=99.13  E-value=9.6e-09  Score=92.14  Aligned_cols=281  Identities=16%  Similarity=0.144  Sum_probs=173.7

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCC---C-CeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEe
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPN---S-IFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVL   77 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~   77 (392)
                      +...|.|.+||...+..+..+..|.++|..++|-+.   . ..|++-.....+.+|+..+|+..-..........|+.+.
T Consensus        85 aD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~D  164 (1062)
T KOG1912|consen   85 ADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVD  164 (1062)
T ss_pred             ccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeC
Confidence            556799999999999999999999999999999873   3 456666677899999999998877766555555667766


Q ss_pred             c-CCCEEEEEeCCCeEEEEEcC----------------------------------------------------------
Q psy17243         78 S-DSRRVVTSDKAGVIAVWVAD----------------------------------------------------------   98 (392)
Q Consensus        78 ~-~~~~l~~~~~d~~i~iwd~~----------------------------------------------------------   98 (392)
                      | |.+.+..-+..|.+.+-+.-                                                          
T Consensus       165 Pfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn  244 (1062)
T KOG1912|consen  165 PFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN  244 (1062)
T ss_pred             CCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence            6 23344444444444433221                                                          


Q ss_pred             ----------------Cceeeeecc---cceeEEEEeCC--CCEEEEecCCCcEEEEeCCCCCCCCc-------------
Q psy17243         99 ----------------NAQLLYSAL---GPSKCLTVTHN--MKYIVSGDGDNSLRIWPTSPQTHKDD-------------  144 (392)
Q Consensus        99 ----------------~~~~~~~~~---~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~-------------  144 (392)
                                      -..++....   +.+.-+.+-|+  ...|++...||.+.+|--+.......             
T Consensus       245 ~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q  324 (1062)
T KOG1912|consen  245 ILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQ  324 (1062)
T ss_pred             eEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccc
Confidence                            111111000   01112334443  34577888888888874322000000             


Q ss_pred             ---c------------------------------------------------------------------------eeee
Q psy17243        145 ---E------------------------------------------------------------------------RFTV  149 (392)
Q Consensus       145 ---~------------------------------------------------------------------------~~~~  149 (392)
                         .                                                                        ....
T Consensus       325 ~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg  404 (1062)
T KOG1912|consen  325 VHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDG  404 (1062)
T ss_pred             eEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcC
Confidence               0                                                                        0000


Q ss_pred             ccccceEEEEEEc-----------CC-------CEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEE
Q psy17243        150 SHSEEITCFTVTW-----------DS-------QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       150 ~~~~~v~~~~~~~-----------~~-------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  211 (392)
                      +|....++....|           .+       .+++.|...|+|.++|+.++.....+..|...|.++.|. .+. -|+
T Consensus       405 ~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~-g~s-slv  482 (1062)
T KOG1912|consen  405 SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWL-GNS-SLV  482 (1062)
T ss_pred             CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeec-cce-eEE
Confidence            1233333332222           11       267889999999999999999888899999999999997 333 333


Q ss_pred             Eec----------CCCeEEEEECCCCceeee--e-cccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccc---cccccc
Q psy17243        212 SGS----------KDSNLIVWDMETGGEEHF--L-AGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLR---RLLKKE  275 (392)
Q Consensus       212 ~~~----------~dg~i~iwd~~~~~~~~~--~-~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~---~~~~~~  275 (392)
                      +.+          .-+.+.+-|+++|.....  + +....+|..+..+..|++++.-+.+.....+.....   ++....
T Consensus       483 Sfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a  562 (1062)
T KOG1912|consen  483 SFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLA  562 (1062)
T ss_pred             EeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhc
Confidence            322          234588899999865432  2 235569999999999999999886655444333211   222222


Q ss_pred             cc-cceeEEE
Q psy17243        276 VS-LDTYTWQ  284 (392)
Q Consensus       276 ~~-~~~~~~~  284 (392)
                      .. +...+|.
T Consensus       563 ~P~it~leWs  572 (1062)
T KOG1912|consen  563 LPLITVLEWS  572 (1062)
T ss_pred             CCcEEEEeec
Confidence            22 5566776

>KOG0309|consensus

Probab=99.11  E-value=5.5e-10  Score=99.33  Aligned_cols=219  Identities=14%  Similarity=0.124  Sum_probs=149.9

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC-ceeEEecccc--cceEEEEEecCC--CEEEEEeCCCeEEEEEcCC
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-SVVSTFKSHQ--STILAVAVLSDS--RRVVTSDKAGVIAVWVADN   99 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~--~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~   99 (392)
                      -.+++.++..+|.|+-+|.++.-| +.+-|+... .+..-+. |.  -.|-...|+|..  .+-++......-.+|++..
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~  100 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK  100 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence            456788999999999999998877 556666543 3333332 33  346777887653  3556666666677888754


Q ss_pred             ce------eeeecccceeEEEEeCCC-CEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243        100 AQ------LLYSALGPSKCLTVTHNM-KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus       100 ~~------~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      ..      .+..+...++.+.|++.. ..+++++.|..+..||+++....  ......-......++|+-....+.+.+.
T Consensus       101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--~ys~~~w~s~asqVkwnyk~p~vlassh  178 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--FYSTSSWRSAASQVKWNYKDPNVLASSH  178 (1081)
T ss_pred             CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc--eeeeecccccCceeeecccCcchhhhcc
Confidence            32      233445567788888854 57888999999999999854322  2222233455677888876555666667


Q ss_pred             CCcEEEEEcCCC-eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee-eecccccceeEEEEcC
Q psy17243        173 DMSLKVWQVVGG-KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH-FLAGHLGCVTCVKLAG  247 (392)
Q Consensus       173 dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~  247 (392)
                      ...|++||.+.+ .++..+++|...|+.+.|.......+.+.+.|++|++||..+..... .......+|..-.+-|
T Consensus       179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P  255 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP  255 (1081)
T ss_pred             CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence            788999999876 57888899999999999986667788899999999999987543221 2222334555555555

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.11  E-value=2.5e-07  Score=91.35  Aligned_cols=229  Identities=17%  Similarity=0.114  Sum_probs=146.4

Q ss_pred             eEEEecCC-CCeEEEEeCCCeEEEEeCCCCceeEEecc-c-------------ccceEEEEEecCCCEEEEEeC-CCeEE
Q psy17243         30 SCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKS-H-------------QSTILAVAVLSDSRRVVTSDK-AGVIA   93 (392)
Q Consensus        30 ~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~~~-d~~i~   93 (392)
                      ..+++++. +.++++-+.++.|.++|.. ++.+..+.. .             -.....+++.++++.|+++.. .+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35788874 5666777778899999975 444444332 1             123578999998887766654 56799


Q ss_pred             EEEcCCceeeee---------c----------ccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCc-----ceee
Q psy17243         94 VWVADNAQLLYS---------A----------LGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDD-----ERFT  148 (392)
Q Consensus        94 iwd~~~~~~~~~---------~----------~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~-----~~~~  148 (392)
                      .+|+.++....-         .          ......++++| ++..+++...++.|++||...+.....     ....
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~  729 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL  729 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence            999877653211         0          11234789999 555666667789999999864321100     0000


Q ss_pred             ------eccccceEEEEEEcCCCEEE-EeeCCCcEEEEEcCCCeEEEEEec-------------C--------CCceeEE
Q psy17243        149 ------VSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKLAQVLVG-------------H--------TDHVSCV  200 (392)
Q Consensus       149 ------~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~-------------~--------~~~v~~~  200 (392)
                            ...-.....++++|+++.|+ +-..++.|++||+.++.......+             +        -.....+
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv  809 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV  809 (1057)
T ss_pred             CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence                  01113456799999988555 455678999999987653211100             0        0123578


Q ss_pred             EEecCCCcEEEEecCCCeEEEEECCCCceeeeec-------------ccccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        201 AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA-------------GHLGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       201 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      +++ +++.++++-..++.|++||..++.......             +.-.....++++++|++++++....+
T Consensus       810 avd-~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~  881 (1057)
T PLN02919        810 LCA-KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL  881 (1057)
T ss_pred             eEe-CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence            888 667788888899999999998776543221             11225678999999999888765543

>KOG2695|consensus

Probab=99.08  E-value=1e-09  Score=89.10  Aligned_cols=152  Identities=10%  Similarity=0.123  Sum_probs=118.1

Q ss_pred             EEEeCCCeEEEEEcCCceeee-ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCC-cceeeeccccceEEEEEE
Q psy17243         84 VTSDKAGVIAVWVADNAQLLY-SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKD-DERFTVSHSEEITCFTVT  161 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~v~~~~~~  161 (392)
                      ++.+.+..+-+-|++++.... .....+.++.|...++.+..|+.+|.|..+|++...+.. ......-|.+.|+++...
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L  307 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL  307 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence            556667778888888875432 344567778888889999999999999999998653332 222334689999999877


Q ss_pred             c-CCCEEEEeeCCCcEEEEEcCCCeE---EEEEecCCCceeEEE--EecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        162 W-DSQYLITGSRDMSLKVWQVVGGKL---AQVLVGHTDHVSCVA--VAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       162 ~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      . ++.+|++.+.+|.|.+||++.-++   +..+.+|...-.-+-  .. +.+..+++++.|...+||.++.+..+.+++-
T Consensus       308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~-~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK-EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc-cccceEEEccCeeEEEEEecccCceeeccCC
Confidence            6 788999999999999999998777   888888865443332  33 4566788899999999999999999888764


Q ss_pred             c
Q psy17243        236 H  236 (392)
Q Consensus       236 ~  236 (392)
                      .
T Consensus       387 ~  387 (425)
T KOG2695|consen  387 P  387 (425)
T ss_pred             C
Confidence            3

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.06  E-value=2.8e-07  Score=73.64  Aligned_cols=203  Identities=13%  Similarity=0.149  Sum_probs=131.5

Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCCC--ceeEEec---ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee-
Q psy17243         32 VAISPNSIFAVSGSEDNTAKVWGLTLG--SVVSTFK---SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS-  105 (392)
Q Consensus        32 ~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-  105 (392)
                      ++.+++|+.||.- .|..|.|-..++.  ..+...+   .....-..++|+||+..|+.+...|+|+++|+...++... 
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~   81 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP   81 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence            5667889877766 5778887765443  2222222   2233468899999999999999999999999986543211 


Q ss_pred             --------cccceeEEEEeCC------CCEEEEecCCCcEEEEeCCCCCCC--C---cceeeeccccceEEEEEEcCCCE
Q psy17243        106 --------ALGPSKCLTVTHN------MKYIVSGDGDNSLRIWPTSPQTHK--D---DERFTVSHSEEITCFTVTWDSQY  166 (392)
Q Consensus       106 --------~~~~~~~~~~~~~------~~~l~~~~~d~~i~~~d~~~~~~~--~---~~~~~~~~~~~v~~~~~~~~~~~  166 (392)
                              ....+..+.|.+.      ...|++-...|.++-|-+..++..  .   ...+.......|.++.++|.-++
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L  161 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL  161 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence                    1123344444332      225666677788887776432111  1   11222235678999999999888


Q ss_pred             EEEeeCC-----------CcEEEEEcCCCeEEEE--------------------------E---ecCCCceeEEEEecCC
Q psy17243        167 LITGSRD-----------MSLKVWQVVGGKLAQV--------------------------L---VGHTDHVSCVAVAVTN  206 (392)
Q Consensus       167 l~~~~~d-----------g~i~i~d~~~~~~~~~--------------------------~---~~~~~~v~~~~~~~~~  206 (392)
                      |++|+..           .-+.-|.+-++.+..+                          +   ......|..+..+ |+
T Consensus       162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS-Pd  240 (282)
T PF15492_consen  162 LLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS-PD  240 (282)
T ss_pred             EEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC-CC
Confidence            8877642           1356666533211100                          0   1134678889999 78


Q ss_pred             CcEEEEecCCCeEEEEECCCCceeeeeccc
Q psy17243        207 KSLVVSGSKDSNLIVWDMETGGEEHFLAGH  236 (392)
Q Consensus       207 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  236 (392)
                      +.+|++...+|.|.+|++.+-++......+
T Consensus       241 g~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             CCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            999999999999999999988777665543

>KOG3914|consensus

Probab=99.05  E-value=1.4e-08  Score=84.24  Aligned_cols=159  Identities=19%  Similarity=0.298  Sum_probs=110.7

Q ss_pred             eeEEEecCCCCeEEEEeCCCeEEEEeCCCCce----eEEecccccceEEEEEecCCCEEEEEeCCCeEE---EEEcCCc-
Q psy17243         29 VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV----VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIA---VWVADNA-  100 (392)
Q Consensus        29 v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~---iwd~~~~-  100 (392)
                      ...+..++.++++|.+..+....++++.....    ..... -...-+++.|..+......+...|.++   +|....+ 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34455677888999888887776777654332    22222 233445666666666666665555444   4444433 


Q ss_pred             -eeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEE
Q psy17243        101 -QLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVW  179 (392)
Q Consensus       101 -~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  179 (392)
                       +.+..+...+..++++||+++++++..|..|++-.....  .....+..+|..-|..++..++ ..|++++.|++|++|
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--FVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW  220 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--cchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence             233344556789999999999999999999999776522  2233455689999999999865 468999999999999


Q ss_pred             EcCCCeEEEEEe
Q psy17243        180 QVVGGKLAQVLV  191 (392)
Q Consensus       180 d~~~~~~~~~~~  191 (392)
                      |+++++.+..+.
T Consensus       221 d~~sgk~L~t~d  232 (390)
T KOG3914|consen  221 DITSGKLLDTCD  232 (390)
T ss_pred             ecccCCcccccc
Confidence            999999886653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.03  E-value=4.2e-07  Score=88.23  Aligned_cols=218  Identities=11%  Similarity=0.102  Sum_probs=143.8

Q ss_pred             ccCCeEEEE----ECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCcee-----------------
Q psy17243          3 GMDCLVNVW----QMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV-----------------   61 (392)
Q Consensus         3 ~~dg~i~vw----d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-----------------   61 (392)
                      ..+|.|.+.    +..+.+. ...-.-...|.+++||||+..|+..+.++++.+-+-. ...+                 
T Consensus        94 ~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~Vs  171 (928)
T PF04762_consen   94 LASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVS  171 (928)
T ss_pred             ECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceee
Confidence            457777777    4433222 1222245789999999999999999989998887431 1111                 


Q ss_pred             -------EEecc------------------------cccceEEEEEecCCCEEEEEeC------CCeEEEEEcCCceeee
Q psy17243         62 -------STFKS------------------------HQSTILAVAVLSDSRRVVTSDK------AGVIAVWVADNAQLLY  104 (392)
Q Consensus        62 -------~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~  104 (392)
                             .+|++                        ....-..+.|-.||+++++.+-      -..+++|+-+ |....
T Consensus       172 VGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s  250 (928)
T PF04762_consen  172 VGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQS  250 (928)
T ss_pred             eccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEe
Confidence                   11110                        2224467889999999998764      2579999877 54433


Q ss_pred             ecc---cceeEEEEeCCCCEEEEecC---CCcEEEEeCCCCCCCCcceee-eccccceEEEEEEcCCCEEEEeeCCCcEE
Q psy17243        105 SAL---GPSKCLTVTHNMKYIVSGDG---DNSLRIWPTSPQTHKDDERFT-VSHSEEITCFTVTWDSQYLITGSRDMSLK  177 (392)
Q Consensus       105 ~~~---~~~~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  177 (392)
                      ...   +-..+++|-|.|+++|+...   ...|.+|.-+..... ..... ......|..+.|++|+..|+....|. |.
T Consensus       251 tSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg-eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vq  328 (928)
T PF04762_consen  251 TSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG-EFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQ  328 (928)
T ss_pred             ccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee-eEecCCCCCCceeeEEEECCCCCEEEEEecCC-ce
Confidence            322   22357899999999998765   345667765432222 22221 13456889999999999999987665 99


Q ss_pred             EEEcCCCeEE--EEEec-CCCceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        178 VWQVVGGKLA--QVLVG-HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       178 i~d~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      +|-..+..-.  +.+.. ....+..+.|+|.+...|...+.+|.+..++..
T Consensus       329 LWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  329 LWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA  379 (928)
T ss_pred             EEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence            9998876522  22321 233455699998888888888887888776653

>KOG2114|consensus

Probab=99.03  E-value=7.1e-08  Score=87.76  Aligned_cols=217  Identities=14%  Similarity=0.240  Sum_probs=148.0

Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccc-eEEEEEecCCCEEEEEeCCC-----eEEEEEcCCc------
Q psy17243         33 AISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQST-ILAVAVLSDSRRVVTSDKAG-----VIAVWVADNA------  100 (392)
Q Consensus        33 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~------  100 (392)
                      +|++++..++.|+.+|.|.+.+ ...+.++.++.++.. |..+....+.++|++.+.|+     .+++|+++.-      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            4577888999999999998887 444555778877777 55555554456888877765     4899998643      


Q ss_pred             eeee-----ec-----ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCC-CCcceeeeccccceEEEEEEcCCCEEEE
Q psy17243        101 QLLY-----SA-----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTH-KDDERFTVSHSEEITCFTVTWDSQYLIT  169 (392)
Q Consensus       101 ~~~~-----~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~  169 (392)
                      +++.     .+     ..|+.+++++.+-+.+++|..+|.|.++.-+-... ............+|+.+++..+++-++.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            2231     11     23667899999999999999999999985432111 1123334456789999999998876333


Q ss_pred             eeCCCcEEEEEcCCCeE-EEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec-ccccceeEEEEcC
Q psy17243        170 GSRDMSLKVWQVVGGKL-AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA-GHLGCVTCVKLAG  247 (392)
Q Consensus       170 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~  247 (392)
                      ......|.+|.+....+ ...+..|..++.|..+++..+.+++++  +..|.+|+....++-..+. +|.....   |..
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~~g~kk~~~---~~~  263 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFEVGEKKEML---VFS  263 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeecCCCeEEEE---EEe
Confidence            33355799999985443 444777888999999995555555544  4579999988766666666 5544332   333


Q ss_pred             CCeEEEEc
Q psy17243        248 DGTVAMSD  255 (392)
Q Consensus       248 dg~~~~~~  255 (392)
                      -|.+++..
T Consensus       264 ~g~~L~v~  271 (933)
T KOG2114|consen  264 FGLLLCVT  271 (933)
T ss_pred             cCEEEEEE
Confidence            35555544

>KOG0309|consensus

Probab=99.02  E-value=1.5e-09  Score=96.56  Aligned_cols=218  Identities=18%  Similarity=0.239  Sum_probs=149.2

Q ss_pred             eEEEEECC---CccceeeeccCCcCeeEEEecCCC-CeEEEEeCCCeEEEEeCCCCc-eeEEecccccceEEEEEecCCC
Q psy17243          7 LVNVWQMN---SHELQSTMEGHLNTVSCVAISPNS-IFAVSGSEDNTAKVWGLTLGS-VVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         7 ~i~vwd~~---~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      .-.+|++.   +......+.+|...|+.+.|+|+. ..+++++.|-.+..||+++.. ++.....-...-..++|+....
T Consensus        92 kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p  171 (1081)
T KOG0309|consen   92 KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP  171 (1081)
T ss_pred             hhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCc
Confidence            34567764   334455678999999999999954 588999999999999998764 3445544556678899988777


Q ss_pred             EEEEEeCCCeEEEEEcCCcee-eeecccce---eEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         82 RVVTSDKAGVIAVWVADNAQL-LYSALGPS---KCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~---~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      .+++.+....|.+||++.+.. +...++++   ..+.|+. ....+.+.+.|++|++||........  ........+|.
T Consensus       172 ~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~--~~~vtt~~piw  249 (1081)
T KOG0309|consen  172 NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES--KRTVTTNFPIW  249 (1081)
T ss_pred             chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc--ceeccccCcce
Confidence            788888888999999987743 44444443   3444433 33467888999999999987543332  22234556666


Q ss_pred             EEEEEcCCC--EEEEeeCCCcEEEEEc---------CC-CeEEEEEecCCCceeEEEEecC---------CCcEEEEecC
Q psy17243        157 CFTVTWDSQ--YLITGSRDMSLKVWQV---------VG-GKLAQVLVGHTDHVSCVAVAVT---------NKSLVVSGSK  215 (392)
Q Consensus       157 ~~~~~~~~~--~l~~~~~dg~i~i~d~---------~~-~~~~~~~~~~~~~v~~~~~~~~---------~~~~l~~~~~  215 (392)
                      .-++.|-|.  ++.---.+..+.+++.         .+ .++++.+.+|.+.|....|-..         .+-.|++-+.
T Consensus       250 ~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk  329 (1081)
T KOG0309|consen  250 RGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK  329 (1081)
T ss_pred             eccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence            666666433  2222112223444433         22 3688999999998877766421         2347999999


Q ss_pred             CCeEEEEECCC
Q psy17243        216 DSNLIVWDMET  226 (392)
Q Consensus       216 dg~i~iwd~~~  226 (392)
                      |..+++|-+.+
T Consensus       330 D~~lrlWpI~~  340 (1081)
T KOG0309|consen  330 DQTLRLWPIDS  340 (1081)
T ss_pred             CCceEeeeccH
Confidence            99999998764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=6.5e-07  Score=79.66  Aligned_cols=198  Identities=12%  Similarity=0.034  Sum_probs=121.1

Q ss_pred             CeEEEEeCCCCceeEEecccccceEEEEEecCCCE-EEEEeC---CCeEEEEEcCCceeee--ecccceeEEEEeCCCCE
Q psy17243         48 NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRR-VVTSDK---AGVIAVWVADNAQLLY--SALGPSKCLTVTHNMKY  121 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~  121 (392)
                      ..|.+-|.+-.. .+.+... +......|+|+++. ++..+.   ...|.++|+.+++...  ...+......|+||++.
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence            356665654333 3333323 37788999999985 554433   3568999998886533  34445567789999987


Q ss_pred             EEEecC---CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-CC--cEEEEEcCCCeEEEEEecCCC
Q psy17243        122 IVSGDG---DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DM--SLKVWQVVGGKLAQVLVGHTD  195 (392)
Q Consensus       122 l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~  195 (392)
                      ++....   +..|.++|+..+...   ... .+........|+|||+.|+..+. .+  .|++.|+.+++..+.... ..
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~---~LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~  321 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLT---QIT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK  321 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEE---Ecc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence            765432   356788887644221   111 22222334579999987776653 22  688888887765443321 11


Q ss_pred             ceeEEEEecCCCcEEEEecCC--------CeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        196 HVSCVAVAVTNKSLVVSGSKD--------SNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       196 ~v~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                        ....|+|.+..++++....        ..|.+.|+.++... .+... .......|+|||+.++...
T Consensus       322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEE
Confidence              1248995544454554433        36888899877643 33322 2334688999999888753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.01  E-value=4.8e-07  Score=77.09  Aligned_cols=213  Identities=10%  Similarity=0.060  Sum_probs=146.8

Q ss_pred             cCCCCeEEEEeCCCeEEEEeCCCCceeEEecc---c---c--cceEEEE----Eec-CCCEEEEEeCCCeEEEEEcCCce
Q psy17243         35 SPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS---H---Q--STILAVA----VLS-DSRRVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        35 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~---~--~~v~~~~----~~~-~~~~l~~~~~d~~i~iwd~~~~~  101 (392)
                      +.||+.++-. ..|.|.+||.++.+..+.--+   .   +  ..+.-..    |++ +|.+++..+. |...+.+...+-
T Consensus       275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~  352 (668)
T COG4946         275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY  352 (668)
T ss_pred             CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence            4467766553 568899999876543221110   0   0  0111111    222 5677777764 556666665554


Q ss_pred             eee-ecccceeEEEEeCCCCEEEEecCCC-cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEE
Q psy17243        102 LLY-SALGPSKCLTVTHNMKYIVSGDGDN-SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVW  179 (392)
Q Consensus       102 ~~~-~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  179 (392)
                      .++ ...+.+.-..+..+++-++.|..|| .+-+||.+...    .+.....-+.|.++..+++|++++++.....|.++
T Consensus       353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e----~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vi  428 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE----VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVI  428 (668)
T ss_pred             eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce----EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence            443 3444566666777777899999998 89999997443    23334566889999999999999999999999999


Q ss_pred             EcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC----eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        180 QVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS----NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       180 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      |+.+++....-+...+-|+.+.|+ ++.++++-+--+|    .|+++|+..++.... ....+.=.+-+|.|||+++..-
T Consensus       429 didngnv~~idkS~~~lItdf~~~-~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         429 DIDNGNVRLIDKSEYGLITDFDWH-PNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-TTPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             EecCCCeeEecccccceeEEEEEc-CCceeEEEecCcceeeeeEEEEecCCCeEEEe-cCCcccccCcccCCCCcEEEEE
Confidence            999998766666677889999999 7888888776665    599999998775543 2233334566889999988764

>KOG4714|consensus

Probab=99.00  E-value=3.3e-09  Score=82.83  Aligned_cols=194  Identities=18%  Similarity=0.217  Sum_probs=121.3

Q ss_pred             eeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEE------------ecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         29 VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST------------FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        29 v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      |+.+.++.+. .|+++..++.+.......+.+...            +..|.++-.+-+.+--++.++++..||.+.+++
T Consensus        39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            5566665543 466776776666665544433322            222222211222222356799999999999998


Q ss_pred             cCCceeeeeccc----ceeEEEEeCCCCEEEEec-----CCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCC-CE
Q psy17243         97 ADNAQLLYSALG----PSKCLTVTHNMKYIVSGD-----GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS-QY  166 (392)
Q Consensus        97 ~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~  166 (392)
                      .+.-..+.....    .....++-..++.+.++.     .-+..+.|+++..+...   ........|.+++-+|.. ..
T Consensus       118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~---~~~~~~~~v~~l~~hp~qq~~  194 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI---PSKKALDAVTALCSHPAQQHL  194 (319)
T ss_pred             chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc---ccccccccchhhhCCcccccE
Confidence            876322111111    111223333444444432     22456677776332222   222223448999998874 56


Q ss_pred             EEEeeCCCcEEEEEcCCCeE-EEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        167 LITGSRDMSLKVWQVVGGKL-AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       167 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      +++|+.||.+.+||.++... ...+..|+.++..+-|+|.++..|+++++||.+.-||..+
T Consensus       195 v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  195 VCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            77888899999999998743 3456789999999999999999999999999999999875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.99  E-value=1.7e-09  Score=61.04  Aligned_cols=39  Identities=36%  Similarity=0.647  Sum_probs=36.8

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEe
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWG   54 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd   54 (392)
                      ++++.++++|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882|consensus

Probab=98.98  E-value=9.2e-09  Score=86.53  Aligned_cols=230  Identities=17%  Similarity=0.146  Sum_probs=158.6

Q ss_pred             CCccCCeEEEEECCC---ccceeeeccCCcCeeEEEecCCCCeEEEEeC-CCeEEEEeCCCCceeEEecccccceEEEEE
Q psy17243          1 MGGMDCLVNVWQMNS---HELQSTMEGHLNTVSCVAISPNSIFAVSGSE-DNTAKVWGLTLGSVVSTFKSHQSTILAVAV   76 (392)
Q Consensus         1 tg~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~   76 (392)
                      +++.||.++.|.-..   -+.+..+..|...|.+++.+.++.++.|.+. |..++++|+++...+..++...-+ ..+.|
T Consensus        25 qASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~w  103 (558)
T KOG0882|consen   25 QASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEW  103 (558)
T ss_pred             eeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEE
Confidence            478899999997543   2455566789999999999999999999777 999999999987766444421111 11222


Q ss_pred             -ecCC--C-EEE-EEeCCCeEEEEEcCCcee-----eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc--
Q psy17243         77 -LSDS--R-RVV-TSDKAGVIAVWVADNAQL-----LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD--  144 (392)
Q Consensus        77 -~~~~--~-~l~-~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--  144 (392)
                       ...|  . .++ +.-.++.+.++|-....+     ..-+..++.++.+++-+..+++....|.|..|.....-+...  
T Consensus       104 v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~  183 (558)
T KOG0882|consen  104 VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTN  183 (558)
T ss_pred             ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccc
Confidence             1222  1 233 334678899998765432     234556899999999999999999999999998873111100  


Q ss_pred             cee----------eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe-----------------------
Q psy17243        145 ERF----------TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV-----------------------  191 (392)
Q Consensus       145 ~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------  191 (392)
                      +..          .........++.|+|++..+.+-..|..|++++.++++.++.+.                       
T Consensus       184 l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgR  263 (558)
T KOG0882|consen  184 LNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGR  263 (558)
T ss_pred             ccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhh
Confidence            111          11234567899999999999999999999999999887554331                       


Q ss_pred             ---------cCCC-ceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee
Q psy17243        192 ---------GHTD-HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       192 ---------~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                               .|.. .-+.+.|. ..+++|+-++-=| |++.++.++.+.+.+
T Consensus       264 Rmaverelek~~~~~~~~~~fd-es~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  264 RMAVERELEKHGSTVGTNAVFD-ESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             hhhHHhhHhhhcCcccceeEEc-CCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence                     1111 23455676 6677877765443 888888888766544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.97  E-value=2.6e-07  Score=82.34  Aligned_cols=220  Identities=10%  Similarity=0.030  Sum_probs=139.3

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeE-EEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccce-----EEEE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSC-VAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTI-----LAVA   75 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~~~   75 (392)
                      ++.+|.+..+|.++|+.+.+..... .+.+ ...  .+..++.+..++.+..+|.++|+.+-.+.......     .+-.
T Consensus       126 ~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~  202 (394)
T PRK11138        126 GSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA  202 (394)
T ss_pred             EcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE
Confidence            4578899999999999988776432 2221 111  23456677789999999999999887765321110     0111


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCceeeeeccc--ce--------eEEEEeC--CCCEEEEecCCCcEEEEeCCCCCCCC
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG--PS--------KCLTVTH--NMKYIVSGDGDNSLRIWPTSPQTHKD  143 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~--------~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~  143 (392)
                      .  .+..++.++.++.+..+|..+++.+.....  +.        ..+..+|  .+..+++++.+|.+..+|..+++..-
T Consensus       203 v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W  280 (394)
T PRK11138        203 T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW  280 (394)
T ss_pred             E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE
Confidence            1  133577788899999999999987654321  10        0111122  35567777889999999987654321


Q ss_pred             cceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCC-CceeEEEEecCCCcEEEEecCCCeEEEE
Q psy17243        144 DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT-DHVSCVAVAVTNKSLVVSGSKDSNLIVW  222 (392)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw  222 (392)
                      ...  ..   ....+.  ..+..++.++.+|.+..+|..+++.+-...... ....+....   +..++.++.+|.|.+.
T Consensus       281 ~~~--~~---~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~v~~~~G~l~~l  350 (394)
T PRK11138        281 KRE--YG---SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLVVGDSEGYLHWI  350 (394)
T ss_pred             eec--CC---CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEEEEeCCCEEEEE
Confidence            111  11   111122  246678888899999999999998765432111 112222222   4566778899999999


Q ss_pred             ECCCCceeeeeccc
Q psy17243        223 DMETGGEEHFLAGH  236 (392)
Q Consensus       223 d~~~~~~~~~~~~~  236 (392)
                      |..+|+.+...+..
T Consensus       351 d~~tG~~~~~~~~~  364 (394)
T PRK11138        351 NREDGRFVAQQKVD  364 (394)
T ss_pred             ECCCCCEEEEEEcC
Confidence            99999988776543

>KOG4714|consensus

Probab=98.94  E-value=1.5e-08  Score=79.28  Aligned_cols=147  Identities=16%  Similarity=0.154  Sum_probs=96.5

Q ss_pred             cCCCCeEEEEeCCCeEEEEeCCCCcee-EEecccccceEEEEEecCCCEEEEEe-----CCCeEEEEEcCCceeeeec--
Q psy17243         35 SPNSIFAVSGSEDNTAKVWGLTLGSVV-STFKSHQSTILAVAVLSDSRRVVTSD-----KAGVIAVWVADNAQLLYSA--  106 (392)
Q Consensus        35 ~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~--  106 (392)
                      +-.++.++++..||.+.+.+.+.-..+ .++..-...-.+.++...++.+.++.     .-+..+.|+++..+.+...  
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~  177 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK  177 (319)
T ss_pred             cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc
Confidence            334567899999999999987652111 11111111112223333444444332     2245677777655443221  


Q ss_pred             -ccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCC
Q psy17243        107 -LGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       107 -~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~  183 (392)
                       ...+.+++-+|. .+.+++|+.||.+.+||.+..  .....+...|+.++..+.|+|. +..|+++++||.+.-||..+
T Consensus       178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccccchhhhCCcccccEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence             124778888884 456778889999999999854  3444556689999999999995 78999999999999999764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.93  E-value=9.8e-09  Score=82.37  Aligned_cols=222  Identities=12%  Similarity=0.195  Sum_probs=141.1

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc-----eeEEecccc------------cceEEEEEecCC--CEEEE
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS-----VVSTFKSHQ------------STILAVAVLSDS--RRVVT   85 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~   85 (392)
                      ....|+++.|...|.||++|...|.|.+|.-+...     ....++.|.            ..|..+.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45679999999999999999999999999765432     223344443            457888887654  36778


Q ss_pred             EeCCCeEEEEEcCCceeeeecccceeEEEEeCCC-C-------EEEEec-CCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         86 SDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNM-K-------YIVSGD-GDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        86 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~-------~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      .+.|.+|++|.+...............-.-+|.+ .       .+--.+ .|..|...        ........|...+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~--------p~rvyaNaH~yhiN  176 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK--------PCRVYANAHPYHIN  176 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec--------cceeccccceeEee
Confidence            8899999999987664322111111100011111 0       000000 01111111        11112246888899


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCCe---EEEEEecCC-----CceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGGK---LAQVLVGHT-----DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      ++.|+.|...++++. |-.|.+|++.-..   .+.-++.|.     ..|++..|+|...+.+.-.+..|.|++-|++...
T Consensus       177 SiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a  255 (460)
T COG5170         177 SISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA  255 (460)
T ss_pred             eeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence            999999888777765 7789999986432   223344443     3578889998888888888889999999998432


Q ss_pred             e------ee----------eecccccceeEEEEcCCCeEEEEc
Q psy17243        229 E------EH----------FLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       229 ~------~~----------~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      .      +.          .+.+-...|..+.|+++|+++++-
T Consensus       256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR  298 (460)
T COG5170         256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR  298 (460)
T ss_pred             hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence            1      11          112223468889999999988874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.93  E-value=3.1e-06  Score=69.83  Aligned_cols=206  Identities=14%  Similarity=0.110  Sum_probs=136.6

Q ss_pred             eEEEEECCCccceeeeccCCcCee--EEEecCCCCeEEEEeC-----CCeEEEEeCC-CCceeEEecccccceEEEEEec
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVS--CVAISPNSIFAVSGSE-----DNTAKVWGLT-LGSVVSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~~~~~-----dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~   78 (392)
                      ...+||..+++....+....+.-.  .-.|++||++|++.-.     .|.|-|||.. +.+.+.++..|.-.-..+.+.|
T Consensus        29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p  108 (305)
T PF07433_consen   29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP  108 (305)
T ss_pred             EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence            367899999988877754333321  3689999999998643     4899999998 6688888887776778889999


Q ss_pred             CCCEEEEEe------------------CCCeEEEEEcCCceeeeecc-------cceeEEEEeCCCCEEEEecCCCc---
Q psy17243         79 DSRRVVTSD------------------KAGVIAVWVADNAQLLYSAL-------GPSKCLTVTHNMKYIVSGDGDNS---  130 (392)
Q Consensus        79 ~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~d~~---  130 (392)
                      |++.|+++.                  .+-.+...|..+++++....       ..+..+++.++|..++..-..|.   
T Consensus       109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~  188 (305)
T PF07433_consen  109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD  188 (305)
T ss_pred             CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence            998888763                  12345666777887765522       25678888888876655443331   


Q ss_pred             ----EEEEeCCCCCCCCccee----eeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEecCCCceeEEE
Q psy17243        131 ----LRIWPTSPQTHKDDERF----TVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVGHTDHVSCVA  201 (392)
Q Consensus       131 ----i~~~d~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~  201 (392)
                          |-+++...  .......    ...-...+-++++++++.++++.+ ..+.+.+||..+++.+....-  ..+..++
T Consensus       189 ~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva  264 (305)
T PF07433_consen  189 APPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVA  264 (305)
T ss_pred             cCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--Cceeeee
Confidence                23332221  1111111    113457889999999998876655 578899999999998876542  3345555


Q ss_pred             EecCCCcEEEEecCCCeE
Q psy17243        202 VAVTNKSLVVSGSKDSNL  219 (392)
Q Consensus       202 ~~~~~~~~l~~~~~dg~i  219 (392)
                      ..  .+.++++.+ .|.+
T Consensus       265 ~~--~~~f~~ssG-~G~~  279 (305)
T PF07433_consen  265 PT--DDGFLVSSG-QGQL  279 (305)
T ss_pred             ec--CCceEEeCC-CccE
Confidence            54  333666655 3443

>KOG1645|consensus

Probab=98.93  E-value=1e-07  Score=79.31  Aligned_cols=235  Identities=14%  Similarity=0.051  Sum_probs=145.1

Q ss_pred             EEEEECCCccceeeeccCCcCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC-CEEEE
Q psy17243          8 VNVWQMNSHELQSTMEGHLNTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS-RRVVT   85 (392)
Q Consensus         8 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~   85 (392)
                      |++.+..+.+...-+..|...|..++|+|... ++..++.+..|+|.|+++...+..+..+ ..+++++|.-+. ++|..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            66777777777777778999999999999665 7888999999999999999999988877 889999998765 57788


Q ss_pred             EeCCCeEEEEEcCCceeee-eccc-----ceeEEE------EeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecccc
Q psy17243         86 SDKAGVIAVWVADNAQLLY-SALG-----PSKCLT------VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        86 ~~~d~~i~iwd~~~~~~~~-~~~~-----~~~~~~------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      |...|.|.+||++..+-.. .+..     ++..++      ..+.+.+++....+  +..|++.............+..+
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG  331 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG  331 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence            8899999999998765322 2211     222222      22234444443332  44566654333333333334556


Q ss_pred             ceEEEEEEcCCCEEEEeeCC-C------cE-EEEEcCCCeEEEEEe-cC-CCc-----eeEEEEecCCCcE-EEEecCCC
Q psy17243        154 EITCFTVTWDSQYLITGSRD-M------SL-KVWQVVGGKLAQVLV-GH-TDH-----VSCVAVAVTNKSL-VVSGSKDS  217 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~d-g------~i-~i~d~~~~~~~~~~~-~~-~~~-----v~~~~~~~~~~~~-l~~~~~dg  217 (392)
                      ...++.+.+..+.++..... .      .+ .--|..+|.++...+ .+ ...     -+...+.+++.++ +..+...+
T Consensus       332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn  411 (463)
T KOG1645|consen  332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN  411 (463)
T ss_pred             ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence            66677776655554443322 1      01 111223333332211 11 000     0112233334444 44556678


Q ss_pred             eEEEEECCCCceeeeecccccceeEEEEc
Q psy17243        218 NLIVWDMETGGEEHFLAGHLGCVTCVKLA  246 (392)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  246 (392)
                      .+.+||..+.+.++.+.- ..+|..++..
T Consensus       412 ~lil~D~~s~evvQ~l~~-~epv~Dicp~  439 (463)
T KOG1645|consen  412 ELILQDPHSFEVVQTLAL-SEPVLDICPN  439 (463)
T ss_pred             eeEEeccchhheeeeccc-Ccceeeccee
Confidence            899999999999988874 3677766643

>KOG1275|consensus

Probab=98.91  E-value=4.8e-08  Score=89.35  Aligned_cols=176  Identities=14%  Similarity=0.182  Sum_probs=133.5

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      |+-...+..+|+.+.+..+...-....|+-|+.  +++++.+|...|+|.+-|..+.+.++++..|.+.|.++..  .|+
T Consensus       153 Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GN  228 (1118)
T KOG1275|consen  153 GGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGN  228 (1118)
T ss_pred             cchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCC
Confidence            444556777888887777666544545666655  6789999999999999999999999999999999988776  588


Q ss_pred             EEEEEeC---------CCeEEEEEcCCceeeeecccce--eEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCC-Ccceee
Q psy17243         82 RVVTSDK---------AGVIAVWVADNAQLLYSALGPS--KCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHK-DDERFT  148 (392)
Q Consensus        82 ~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~  148 (392)
                      .|++++.         |..|++||++..+.+..+.-++  .-+.|+|. ...+++++..|...+-|..+.... ......
T Consensus       229 lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v  308 (1118)
T KOG1275|consen  229 LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV  308 (1118)
T ss_pred             eEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEE
Confidence            9998875         4468999999887765444322  45666774 457888899999999984432222 222333


Q ss_pred             eccccceEEEEEEcCCCEEEEeeCCCcEEEEEc
Q psy17243        149 VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV  181 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  181 (392)
                      ......+..++++++++.++.|..+|.|.+|.-
T Consensus       309 ~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  309 NPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            345566999999999999999999999999983

>KOG4190|consensus

Probab=98.89  E-value=1e-08  Score=88.58  Aligned_cols=214  Identities=12%  Similarity=0.186  Sum_probs=141.1

Q ss_pred             CCccCCeEEEEECCC-------ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc--cccce
Q psy17243          1 MGGMDCLVNVWQMNS-------HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS--HQSTI   71 (392)
Q Consensus         1 tg~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v   71 (392)
                      +++.|.+|++|.++.       ..+..+++.|+.+|..+.|-.+.++++++  ||-|.+||.--++++..+..  ..+.+
T Consensus       752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~  829 (1034)
T KOG4190|consen  752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAG  829 (1034)
T ss_pred             eccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCC
Confidence            478999999999853       23556788999999999999998887765  88999999877776654431  12233


Q ss_pred             EEEEEecC--CCEEEE-EeCCCeEEEEEcCCceeeeecc--------cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCC
Q psy17243         72 LAVAVLSD--SRRVVT-SDKAGVIAVWVADNAQLLYSAL--------GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT  140 (392)
Q Consensus        72 ~~~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  140 (392)
                      ..+...++  ...++. ++...+|+++|.+..+...+..        ..+.++++.+.|++++++-.+|.|.+.|.++++
T Consensus       830 ~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  830 GNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             ceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence            33333333  333444 3677899999999876543321        346799999999999999999999999998765


Q ss_pred             CCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEE-EEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeE
Q psy17243        141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV-WQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNL  219 (392)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  219 (392)
                      .....+..   ......++ .|..+.|+....|..+.+ |-.-.+......+....+..-+.   .-+.-+++......+
T Consensus       910 vINswrpm---ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflq---svgpSLV~a~~Gn~l  982 (1034)
T KOG4190|consen  910 VINSWRPM---ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQ---SVGPSLVTAQNGNIL  982 (1034)
T ss_pred             eeccCCcc---cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhh---ccCceeEEeccCcEE
Confidence            44333221   11122222 244556777777888888 87666655444443333322221   234456666666677


Q ss_pred             EEEE
Q psy17243        220 IVWD  223 (392)
Q Consensus       220 ~iwd  223 (392)
                      .+|-
T Consensus       983 gVYa  986 (1034)
T KOG4190|consen  983 GVYA  986 (1034)
T ss_pred             EEEe
Confidence            7774

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.88  E-value=5.6e-06  Score=73.91  Aligned_cols=224  Identities=11%  Similarity=0.023  Sum_probs=136.5

Q ss_pred             CccCCeEEEEECCCccceeeeccCCc-Ce-e-----EEEecC--CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLN-TV-S-----CVAISP--NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTIL   72 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~-~v-~-----~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~   72 (392)
                      ++.+|.|.-+|.++|+.+....-... .+ .     .+.-.|  .+..++.++.+|.+..+|.++|+.+-+.+... .+.
T Consensus        75 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~  153 (394)
T PRK11138         75 ADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EAL  153 (394)
T ss_pred             ECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC-cee
Confidence            45678889999999988877543220 00 0     000111  34467778889999999999999887766432 222


Q ss_pred             E-EEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccceeEE----EEeC--CCCEEEEecCCCcEEEEeCCCCCCCCcc
Q psy17243         73 A-VAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCL----TVTH--NMKYIVSGDGDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        73 ~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~  145 (392)
                      + ...  .+..++++..++.+..+|..+++.+.........+    ..+|  .+..++.++.++.+..+|..+++..-..
T Consensus       154 ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~  231 (394)
T PRK11138        154 SRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQ  231 (394)
T ss_pred             cCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhhee
Confidence            2 122  24467778889999999999999887665422111    0111  2345777888899998888765433221


Q ss_pred             eeeecc-cc---ceEEEEEEc--CCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeE
Q psy17243        146 RFTVSH-SE---EITCFTVTW--DSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNL  219 (392)
Q Consensus       146 ~~~~~~-~~---~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  219 (392)
                      ...... ..   ....+..+|  .+..+++++.+|.+..+|..+++.+-....  .....+..   .+..++.++.+|.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~---~~~~vy~~~~~g~l  306 (394)
T PRK11138        232 RISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV---DGGRIYLVDQNDRV  306 (394)
T ss_pred             ccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE---ECCEEEEEcCCCeE
Confidence            111000 00   000111111  245777788899999999999987655431  11122222   24456667789999


Q ss_pred             EEEECCCCceeeee
Q psy17243        220 IVWDMETGGEEHFL  233 (392)
Q Consensus       220 ~iwd~~~~~~~~~~  233 (392)
                      ..+|..+++.+...
T Consensus       307 ~ald~~tG~~~W~~  320 (394)
T PRK11138        307 YALDTRGGVELWSQ  320 (394)
T ss_pred             EEEECCCCcEEEcc
Confidence            99999999876543

>KOG2695|consensus

Probab=98.88  E-value=7.5e-09  Score=84.16  Aligned_cols=139  Identities=16%  Similarity=0.214  Sum_probs=109.0

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC-----ceeEEecccccceEEEEEe
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-----SVVSTFKSHQSTILAVAVL   77 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~~   77 (392)
                      +.+-.|-+-|++++. .+.+. .++.|.++.|...++++..|..+|.|..+|++..     .+...+. |.+.|+++...
T Consensus       231 G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~L  307 (425)
T KOG2695|consen  231 GLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQIL  307 (425)
T ss_pred             cccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhh
Confidence            334456666666553 22333 5678999999998899999999999999999765     4455555 89999999887


Q ss_pred             c-CCCEEEEEeCCCeEEEEEcCCcee---eeecccceeEEE-----EeCCCCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         78 S-DSRRVVTSDKAGVIAVWVADNAQL---LYSALGPSKCLT-----VTHNMKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        78 ~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~-----~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      . ++++|++.+.+|+|++||++--+.   +..+.++++..+     +.+....+++++.|-..++|.++.+.....
T Consensus       308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            7 788999999999999999987776   888888887544     456777888999999999999986554433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.87  E-value=1.3e-06  Score=72.33  Aligned_cols=180  Identities=17%  Similarity=0.108  Sum_probs=114.3

Q ss_pred             CCeEEEEeCCCCceeEEecccc--cceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc--ceeEEEEeCCCCEE
Q psy17243         47 DNTAKVWGLTLGSVVSTFKSHQ--STILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG--PSKCLTVTHNMKYI  122 (392)
Q Consensus        47 dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l  122 (392)
                      +|+|..||..+|+.+-......  ....+. ..+++..+++++.++.+..||..+++.+.....  ++... ....+..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeeccccc
Confidence            6899999999999988775311  111211 333567888889999999999999998765543  22222 23355566


Q ss_pred             EEecCCCcEEEEeCCCCCCCCcceeee-ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCce----
Q psy17243        123 VSGDGDNSLRIWPTSPQTHKDDERFTV-SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHV----  197 (392)
Q Consensus       123 ~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v----  197 (392)
                      ++++.++.++.+|..+++..-...... .............++..++++..++.|..+|+++|+.+..........    
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~  159 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI  159 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred             ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence            777788899999987654432211111 011112223333347888999889999999999999988876544221    


Q ss_pred             ------eEEEEecCCCcEEEEecCCCe-EEEEECCCCceee
Q psy17243        198 ------SCVAVAVTNKSLVVSGSKDSN-LIVWDMETGGEEH  231 (392)
Q Consensus       198 ------~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~  231 (392)
                            ..-... .++ .++.++.++. +.+ |+.+++.+.
T Consensus       160 ~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~-d~~tg~~~w  197 (238)
T PF13360_consen  160 SSFSDINGSPVI-SDG-RVYVSSGDGRVVAV-DLATGEKLW  197 (238)
T ss_dssp             EEETTEEEEEEC-CTT-EEEEECCTSSEEEE-ETTTTEEEE
T ss_pred             eeecccccceEE-ECC-EEEEEcCCCeEEEE-ECCCCCEEE
Confidence                  122222 334 5555666775 555 999998664

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.82  E-value=1.1e-05  Score=67.53  Aligned_cols=227  Identities=13%  Similarity=0.092  Sum_probs=141.3

Q ss_pred             CCeEEEEECCCccceeeeccC---C----cCeeEEEecCCCCeEEEE--eCCCeEEEEeCCCCceeEEecccccceEEEE
Q psy17243          5 DCLVNVWQMNSHELQSTMEGH---L----NTVSCVAISPNSIFAVSG--SEDNTAKVWGLTLGSVVSTFKSHQSTILAVA   75 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h---~----~~v~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~   75 (392)
                      .-.|.+||.++.+...++.-.   .    .....++++.++++++..  +-...|.|-|++.++.+.++.. .+. ..+-
T Consensus        66 tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC-~~iy  143 (342)
T PF06433_consen   66 TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGC-WLIY  143 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSE-EEEE
T ss_pred             eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCE-EEEE
Confidence            346899999998777654321   1    123456788899987765  3456799999999998888763 332 2222


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcC-Cceeeeeccc-------ce-eEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcce
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVAD-NAQLLYSALG-------PS-KCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER  146 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~-------~~-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  146 (392)
                      -.+ ...+.+-|.||.+.-..+. .|+.......       ++ ..-.+...+..++.-+.+|.|+-.|+..........
T Consensus       144 P~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~  222 (342)
T PF06433_consen  144 PSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP  222 (342)
T ss_dssp             EEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE
T ss_pred             ecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc
Confidence            222 2468888999999999887 4544322211       11 122333455566667888999888886443221111


Q ss_pred             eeec---------cccceEEEEEEcCCCEEEEeeCC----------CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCC
Q psy17243        147 FTVS---------HSEEITCFTVTWDSQYLITGSRD----------MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNK  207 (392)
Q Consensus       147 ~~~~---------~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (392)
                      ....         ..+.-.-+++++..+.|++.-..          ..|.+||+.+++.+..+.. ..++.+|+.+..+.
T Consensus       223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~  301 (342)
T PF06433_consen  223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDK  301 (342)
T ss_dssp             EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS
T ss_pred             ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCC
Confidence            1110         12233457788776666654321          2588999999999998873 35688999996666


Q ss_pred             cEEEEe-cCCCeEEEEECCCCceeeeecc
Q psy17243        208 SLVVSG-SKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       208 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      .+|++. ..++.|.+||..+++.+.++..
T Consensus       302 P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  302 PLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             -EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             cEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            677654 4589999999999999988874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.81  E-value=8.4e-08  Score=77.14  Aligned_cols=221  Identities=13%  Similarity=0.229  Sum_probs=142.3

Q ss_pred             CccCCeEEEEECCCc-----cceeeeccCC------------cCeeEEEecCCCC--eEEEEeCCCeEEEEeCCCCc---
Q psy17243          2 GGMDCLVNVWQMNSH-----ELQSTMEGHL------------NTVSCVAISPNSI--FAVSGSEDNTAKVWGLTLGS---   59 (392)
Q Consensus         2 g~~dg~i~vwd~~~~-----~~~~~~~~h~------------~~v~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~---   59 (392)
                      |...|.|.++.-+..     +....+++|.            ..|..+.|..++.  .++..+.|.+|++|.+....   
T Consensus        44 GDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~  123 (460)
T COG5170          44 GDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKV  123 (460)
T ss_pred             cCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchh
Confidence            455588988876432     2333455553            5788899887543  45566689999999874220   


Q ss_pred             ----------------------------------ee-----EEe-cccccceEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q psy17243         60 ----------------------------------VV-----STF-KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADN   99 (392)
Q Consensus        60 ----------------------------------~~-----~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   99 (392)
                                                        .+     +.+ ..|.--|.++.|..|...++++ .|-.|.+|+++-
T Consensus       124 va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i  202 (460)
T COG5170         124 VAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEI  202 (460)
T ss_pred             hhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccc
Confidence                                              00     001 2466678899998887777665 467799998864


Q ss_pred             ceee-----------eecccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCCC----c---------ceeeeccccc
Q psy17243        100 AQLL-----------YSALGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHKD----D---------ERFTVSHSEE  154 (392)
Q Consensus       100 ~~~~-----------~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~----~---------~~~~~~~~~~  154 (392)
                      ...-           ..+..-+++..|+|. .+.+.-.+..|.|++-|++......    .         .....+-...
T Consensus       203 ~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsS  282 (460)
T COG5170         203 IDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSS  282 (460)
T ss_pred             cCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhh
Confidence            3211           112224567788884 4566777888999999998422110    0         0111123457


Q ss_pred             eEEEEEEcCCCEEEEeeCCCcEEEEEcCCC-eEEEEEecCC------------Cce---eEEEEecCCCcEEEEecCCCe
Q psy17243        155 ITCFTVTWDSQYLITGSRDMSLKVWQVVGG-KLAQVLVGHT------------DHV---SCVAVAVTNKSLVVSGSKDSN  218 (392)
Q Consensus       155 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~------------~~v---~~~~~~~~~~~~l~~~~~dg~  218 (392)
                      |..+.|+++|+++++-+. -+++|||++.. .++.++.-|.            ..|   ..+.|+ .+...+.+|+..+.
T Consensus       283 ISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfS-gd~~~v~sgsy~NN  360 (460)
T COG5170         283 ISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFS-GDDKHVLSGSYSNN  360 (460)
T ss_pred             hcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEec-CCcccccccccccc
Confidence            888999999999988764 48999999865 4666664442            222   245677 67778888888888


Q ss_pred             EEEEECC
Q psy17243        219 LIVWDME  225 (392)
Q Consensus       219 i~iwd~~  225 (392)
                      .-+|-..
T Consensus       361 fgiyp~~  367 (460)
T COG5170         361 FGIYPTD  367 (460)
T ss_pred             eeeeccc
Confidence            7777543

>KOG0882|consensus

Probab=98.80  E-value=7.7e-08  Score=81.15  Aligned_cols=205  Identities=15%  Similarity=0.154  Sum_probs=147.0

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC--C-ceeEEecccccceEEEEEecCCCEEEEEeC-CCeEEEEEcCCc
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL--G-SVVSTFKSHQSTILAVAVLSDSRRVVTSDK-AGVIAVWVADNA  100 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~  100 (392)
                      |.+.|+.+.-. -.+++.+++.||.++.|.-..  + +.+..+..|-..|.+++.+.++..+.+.+. |..++++|+++-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            77777766544 456899999999999997443  1 345566778899999999999999999777 999999999876


Q ss_pred             eeeeecc---cceeEEEEeCCC---CEEEE-ecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC
Q psy17243        101 QLLYSAL---GPSKCLTVTHNM---KYIVS-GDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD  173 (392)
Q Consensus       101 ~~~~~~~---~~~~~~~~~~~~---~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  173 (392)
                      ..+.-..   -|-.+-.+...|   ..+++ ...++.+.++|-..... +......-|..+|.++.+++.+..+++....
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-QDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-ccceecccccCceEEEEeeccccceeecccc
Confidence            5542211   122222222223   13333 34578999999874432 3333445688999999999999999999999


Q ss_pred             CcEEEEEcCC------CeEEE---------EEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeee
Q psy17243        174 MSLKVWQVVG------GKLAQ---------VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF  232 (392)
Q Consensus       174 g~i~i~d~~~------~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  232 (392)
                      |.|.-|....      .+...         .+...+....++.|+ +.+..+.+-+.|..|++++..+++.++.
T Consensus       166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-p~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-PDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEc-cccCcccccCcccEEEEEEeccchhhhh
Confidence            9999999863      11111         122245567899999 6778888888999999999999876544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.79  E-value=3.2e-05  Score=64.00  Aligned_cols=222  Identities=17%  Similarity=0.153  Sum_probs=145.0

Q ss_pred             eeEEEecC-CCCeEEEEeCCCe-EEEEeCCCCceeEEecccccce--EEEEEecCCCEEEEEeC-----CCeEEEEEcC-
Q psy17243         29 VSCVAISP-NSIFAVSGSEDNT-AKVWGLTLGSVVSTFKSHQSTI--LAVAVLSDSRRVVTSDK-----AGVIAVWVAD-   98 (392)
Q Consensus        29 v~~~~~~~-~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~iwd~~-   98 (392)
                      ...++.+| ....++.+-.-|+ ..+||..+++....+....+.-  -.-.|++||++|++.-.     .|.|-+||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34678888 4556666766654 7789999999988876544432  24689999999998743     4789999999 


Q ss_pred             Cceeeeeccc---ceeEEEEeCCCCEEEEecC------------------CCcEEEEeCCCCCCCCcceee-eccccceE
Q psy17243         99 NAQLLYSALG---PSKCLTVTHNMKYIVSGDG------------------DNSLRIWPTSPQTHKDDERFT-VSHSEEIT  156 (392)
Q Consensus        99 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~~-~~~~~~v~  156 (392)
                      +.+.+.++..   ....+.+.|+++.|+++..                  +-.+.+.|..++......... ..|...+.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            5566665554   2346778999988877642                  123444555554443333321 23667789


Q ss_pred             EEEEEcCCCEEEEeeCCCc-------EEEEEcCCCeEEEEEe-------cCCCceeEEEEecCCCcEEEEecCCCeEEEE
Q psy17243        157 CFTVTWDSQYLITGSRDMS-------LKVWQVVGGKLAQVLV-------GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVW  222 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  222 (392)
                      .+++.++|..++..-..|.       |.+++.  ++.+..+.       .-...+-+|++++..+.+.+|+-..+.+.+|
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            9999998876665544332       333332  22222222       2346788999994444455666678999999


Q ss_pred             ECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        223 DMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       223 d~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      |..+++.+....-  ..+..++-.+++ ++++.
T Consensus       245 d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ss  274 (305)
T PF07433_consen  245 DAATGRLLGSVPL--PDACGVAPTDDG-FLVSS  274 (305)
T ss_pred             ECCCCCEeecccc--CceeeeeecCCc-eEEeC
Confidence            9999998876543  356677777777 55554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.79  E-value=2.8e-08  Score=55.93  Aligned_cols=39  Identities=33%  Similarity=0.571  Sum_probs=36.5

Q ss_pred             CceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         58 GSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        58 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      ++++.++.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.75  E-value=2.7e-06  Score=68.18  Aligned_cols=167  Identities=13%  Similarity=0.154  Sum_probs=112.7

Q ss_pred             CeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc-------cccceEEEEEecCC------CEEEEEeCCCeEEE
Q psy17243         28 TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS-------HQSTILAVAVLSDS------RRVVTSDKAGVIAV   94 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~------~~l~~~~~d~~i~i   94 (392)
                      .-..++||||+.+||.+...|+|+++|+... .+..+..       -...|..+.|.+..      ..|++-...|.++-
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            4578999999999999999999999998753 3333332       12457777776532      25677777888887


Q ss_pred             EEcCCc-----eeeee------cccceeEEEEeCCCCEEEEecCCC-----------cEEEEeCCCCC-----------C
Q psy17243         95 WVADNA-----QLLYS------ALGPSKCLTVTHNMKYIVSGDGDN-----------SLRIWPTSPQT-----------H  141 (392)
Q Consensus        95 wd~~~~-----~~~~~------~~~~~~~~~~~~~~~~l~~~~~d~-----------~i~~~d~~~~~-----------~  141 (392)
                      |-+..+     +..+.      +...+.++.++|..++|++|+...           -+..|.+-.+.           .
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~  203 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD  203 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence            765322     22222      234788999999988888876421           24455432110           0


Q ss_pred             C------------Cccee---eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCC
Q psy17243        142 K------------DDERF---TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTD  195 (392)
Q Consensus       142 ~------------~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  195 (392)
                      .            .....   .......|..|.++||++.|++...+|.|.+|++.+.+....+..+..
T Consensus       204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq  272 (282)
T PF15492_consen  204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ  272 (282)
T ss_pred             ccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence            0            00001   112457789999999999999999999999999998887777654433

>KOG2066|consensus

Probab=98.69  E-value=5.4e-06  Score=75.39  Aligned_cols=183  Identities=14%  Similarity=0.149  Sum_probs=131.2

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee--
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL--  103 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--  103 (392)
                      ...++|++++  +++|+-|+.+|.|++++... .. .+...|...      ..+|.++++|+.||+|.|-.+-+.+..  
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            4566777775  45899999999999998653 33 333334443      557999999999999999988877654  


Q ss_pred             eecccceeEEEEeCC-----CCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEE
Q psy17243        104 YSALGPSKCLTVTHN-----MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV  178 (392)
Q Consensus       104 ~~~~~~~~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  178 (392)
                      ..+..++.+++++|+     .+.+++|+.-| +.++.-+-....... ......++|.++.|.  |++++-++.+| |++
T Consensus       109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~v  183 (846)
T KOG2066|consen  109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKV  183 (846)
T ss_pred             EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence            466779999999997     56899999988 777754422222222 334667899999995  77888888776 899


Q ss_pred             EEcCCCeEEEEEecCCCc------eeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        179 WQVVGGKLAQVLVGHTDH------VSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       179 ~d~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      ||..+++.+..++.....      ...+.|. ++. .|+.| ..-+|+|..++.
T Consensus       184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~-~~~-~LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ-DED-RLVIG-WGDSVKICSIKK  234 (846)
T ss_pred             EeccccceeeccCCCCCCCCcccCCCceEec-CCC-eEEEe-cCCeEEEEEEec
Confidence            999998877766543332      2356776 333 44444 556788888873

>KOG1275|consensus

Probab=98.66  E-value=1.1e-06  Score=80.87  Aligned_cols=179  Identities=9%  Similarity=0.096  Sum_probs=133.5

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccceeE-EEEe
Q psy17243         38 SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKC-LTVT  116 (392)
Q Consensus        38 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~  116 (392)
                      +..++.|+.-..+..+|+.+.+..+......+.|.-++.  +++.+++|...|+|.+-|..+.+.++++..+... ..|+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            345666777777888999988887776654545555554  6789999999999999999999999988876654 3577


Q ss_pred             CCCCEEEEecC---------CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC-CCEEEEeeCCCcEEEEE---cCC
Q psy17243        117 HNMKYIVSGDG---------DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQ---VVG  183 (392)
Q Consensus       117 ~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d---~~~  183 (392)
                      -.|+.|++++.         |..|+|||++.......+.+..    ...-+.|.|. ...+++.+..|...+-|   +.+
T Consensus       225 v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~----~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  225 VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY----GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc----CchhhhhcccccceEEEEecccceeeccccccCC
Confidence            78999998864         5568999998665555544332    1245667776 56788888899999999   433


Q ss_pred             Ce-EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEE
Q psy17243        184 GK-LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD  223 (392)
Q Consensus       184 ~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  223 (392)
                      .. -+..+......+..+.++ ++++.++-|..+|.|.+|.
T Consensus       301 P~~~~~~v~p~~s~i~~fDiS-sn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDIS-SNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CccceeEEccCCCcceeEEec-CCCceEEEecccCcEeeec
Confidence            32 223333344558999999 7899999999999999997

>KOG1920|consensus

Probab=98.65  E-value=7.1e-06  Score=78.06  Aligned_cols=218  Identities=12%  Similarity=0.070  Sum_probs=133.8

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC----C-------------------Cc
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT----L-------------------GS   59 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~----~-------------------~~   59 (392)
                      ...|.|.+-|.++..... ...-...|.+++|+||++.++..+..+++.+-.-.    .                   |+
T Consensus        87 ~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr  165 (1265)
T KOG1920|consen   87 TALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR  165 (1265)
T ss_pred             ecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc
Confidence            456777777766544322 22256789999999999999988888877665321    0                   01


Q ss_pred             eeEEeccc---------------------ccceEEEEEecCCCEEEEE-----eCCCeEEEEEcCCceeeee---cccce
Q psy17243         60 VVSTFKSH---------------------QSTILAVAVLSDSRRVVTS-----DKAGVIAVWVADNAQLLYS---ALGPS  110 (392)
Q Consensus        60 ~~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~---~~~~~  110 (392)
                      .-..+.+.                     .+.=+++.|--||+++++.     .....|++||-+ +.+-..   ..+..
T Consensus       166 keTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~  244 (1265)
T KOG1920|consen  166 KETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQ  244 (1265)
T ss_pred             cceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccc
Confidence            11112211                     1112458899999998873     333789999988 433221   22344


Q ss_pred             eEEEEeCCCCEEEEec---CCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEE---eeCCCcEEEEEcCCC
Q psy17243        111 KCLTVTHNMKYIVSGD---GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLIT---GSRDMSLKVWQVVGG  184 (392)
Q Consensus       111 ~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~  184 (392)
                      .+++|-|.|..+++-.   .++.|.+|.-+................++..++|+.++..|++   ......|++|-+.+-
T Consensus       245 ~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  245 HSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            6899999999988853   4567989976543332222222233445999999999999888   445556999998876


Q ss_pred             eEE--EEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        185 KLA--QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       185 ~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      .-.  +.+.......  +.|+|.....+..-..+|...++|+
T Consensus       325 hWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  325 HWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             EEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence            422  2222111111  6777655555554445666555553

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.65  E-value=0.00014  Score=60.99  Aligned_cols=246  Identities=13%  Similarity=0.076  Sum_probs=156.2

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEe----------CCCeEEEEeCCCCceeEEeccccc------
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS----------EDNTAKVWGLTLGSVVSTFKSHQS------   69 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~------   69 (392)
                      +.+.|+|..+++.+..+..  +-.-.+..+|+++.+++++          ..-.|.+||..+-+...++.-...      
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            5899999999988877764  3334567899999887653          234699999999888775543222      


Q ss_pred             -ceEEEEEecCCCEEEEEe--CCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcce
Q psy17243         70 -TILAVAVLSDSRRVVTSD--KAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER  146 (392)
Q Consensus        70 -~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  146 (392)
                       ....++++.+++++++..  -...|.+.|+..++.+.+...+-....+-....-|.+-|.||.+.-..+..........
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence             123357788898877754  34679999999999988877766555554444568888999999988887432222111


Q ss_pred             --eeeccccce-EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEE--EEEecC----------CCceeEEEEecCCCcEEE
Q psy17243        147 --FTVSHSEEI-TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA--QVLVGH----------TDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       147 --~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~----------~~~v~~~~~~~~~~~~l~  211 (392)
                        .+.....++ ..-++...+..++--+.+|.|+-.|+......  ..+.--          .+.-.-+++++..+.+++
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence              111122222 23345555556666778999999998765422  222210          122344677755555555


Q ss_pred             EecC--CC-------eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEE
Q psy17243        212 SGSK--DS-------NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       212 ~~~~--dg-------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                      .-..  ++       .|.++|+.+++.+.++.. ..++.+|+.+.|.+=++.
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~  305 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLY  305 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEE
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEE
Confidence            4321  11       388889999999998874 456889999988774443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.64  E-value=3e-05  Score=67.99  Aligned_cols=247  Identities=14%  Similarity=0.067  Sum_probs=138.2

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccc-----------------
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH-----------------   67 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----------------   67 (392)
                      .+.+.|+|+++++...... ....+....|+|+|+.++... ++.|.+++..+++..+.-...                 
T Consensus        22 ~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            4678899999876554444 367899999999999988875 678999998877444322111                 


Q ss_pred             ccceEEEEEecCCCEEEEEeCC-Ce-----------------------------------EEEEEcCCceeee-e-----
Q psy17243         68 QSTILAVAVLSDSRRVVTSDKA-GV-----------------------------------IAVWVADNAQLLY-S-----  105 (392)
Q Consensus        68 ~~~v~~~~~~~~~~~l~~~~~d-~~-----------------------------------i~iwd~~~~~~~~-~-----  105 (392)
                      -+.-..+-|+||+++|+....| ..                                   +.++|+.+++... .     
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~  179 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL  179 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred             cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence            1123568899999988865432 11                                   2333444443311 0     


Q ss_pred             --cccceeEEEEeCCCCEEEEecCC-----CcEEEEeCCCCCCCCcceeeeccccce---EEEEEE-cCC-CEEEEeeCC
Q psy17243        106 --ALGPSKCLTVTHNMKYIVSGDGD-----NSLRIWPTSPQTHKDDERFTVSHSEEI---TCFTVT-WDS-QYLITGSRD  173 (392)
Q Consensus       106 --~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~v---~~~~~~-~~~-~~l~~~~~d  173 (392)
                        ....+..+.|.++++.|++.-.+     ..+.++|..++......  .......|   ....+. +++ .+|.....+
T Consensus       180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~--~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~  257 (353)
T PF00930_consen  180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL--EETSDGWVDVYDPPHFLGPDGNEFLWISERD  257 (353)
T ss_dssp             HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE--EEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred             CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE--EecCCcceeeecccccccCCCCEEEEEEEcC
Confidence              01133567788888744443322     23555666543222211  22222222   244454 554 455555566


Q ss_pred             Cc--EEEEEcCCCeEEEEEecCCCceeE-EEEecCCCcEEEEecCC----CeEEEEECCCCceeeeecccccceeEEEEc
Q psy17243        174 MS--LKVWQVVGGKLAQVLVGHTDHVSC-VAVAVTNKSLVVSGSKD----SNLIVWDMETGGEEHFLAGHLGCVTCVKLA  246 (392)
Q Consensus       174 g~--i~i~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  246 (392)
                      |.  |.+++...+. ...+....-.|+. +.+++.++.+.+++..+    ..|..-++..+..+..+......-..+.||
T Consensus       258 G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S  336 (353)
T PF00930_consen  258 GYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS  336 (353)
T ss_dssp             SSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred             CCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence            65  4455555554 3455555566754 66775666666777653    356666777334444554333333699999


Q ss_pred             CCCeEEEEcC
Q psy17243        247 GDGTVAMSDL  256 (392)
Q Consensus       247 ~dg~~~~~~~  256 (392)
                      |+|++++-..
T Consensus       337 pdg~y~v~~~  346 (353)
T PF00930_consen  337 PDGKYYVDTY  346 (353)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999988643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2114|consensus

Probab=98.63  E-value=5.8e-06  Score=75.77  Aligned_cols=192  Identities=16%  Similarity=0.193  Sum_probs=129.9

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcC-eeEEEecCCCCeEEEEeCCC-----eEEEEeCCCC------ceeE--Eecc-
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNT-VSCVAISPNSIFAVSGSEDN-----TAKVWGLTLG------SVVS--TFKS-   66 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~------~~~~--~~~~-   66 (392)
                      |+.+|.|.+.+ .+.+.++.++.+... |..+....+..+|++-+.|+     .|+||+++.-      +++.  .+.. 
T Consensus        41 gt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~  119 (933)
T KOG2114|consen   41 GTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTI  119 (933)
T ss_pred             eeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeecc
Confidence            56677776665 345555778887777 55554444446888877664     4999998643      2331  1111 


Q ss_pred             ----cccceEEEEEecCCCEEEEEeCCCeEEEEEcC--C--c-e--eeeecccceeEEEEeCCCCEEEEecCCCcEEEEe
Q psy17243         67 ----HQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD--N--A-Q--LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWP  135 (392)
Q Consensus        67 ----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~--~-~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d  135 (392)
                          ...++.+++.+.+-+.+++|-.+|.|..+.-+  .  + +  .......+++.+.+..++..++.......|.+|.
T Consensus       120 ~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~  199 (933)
T KOG2114|consen  120 KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYS  199 (933)
T ss_pred             CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEE
Confidence                35678999999999999999999999998322  1  1 1  1233456899999999888755555567899999


Q ss_pred             CCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe-cCCCce
Q psy17243        136 TSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV-GHTDHV  197 (392)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v  197 (392)
                      +... . ........+...+.|-.+++....+++++. ..+.+||....++-..+. +|....
T Consensus       200 l~gr-~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  200 LSGR-T-PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEM  259 (933)
T ss_pred             ecCC-C-cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEE
Confidence            8732 2 334445678888999999876554666653 469999988766666665 555443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.63  E-value=9.3e-05  Score=60.35  Aligned_cols=191  Identities=15%  Similarity=0.163  Sum_probs=116.0

Q ss_pred             EecccccceEEEEEecCCC-EEEEEeCCCeEEEEEcCCceeeeecc----cceeEEEEeCCCCEEEEecCCCcEEEEeCC
Q psy17243         63 TFKSHQSTILAVAVLSDSR-RVVTSDKAGVIAVWVADNAQLLYSAL----GPSKCLTVTHNMKYIVSGDGDNSLRIWPTS  137 (392)
Q Consensus        63 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~  137 (392)
                      .+.+-...+..++|.|+.+ .+++....+.|..++.+ ++.++.+.    +....+++..++.++++--.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4445556799999999866 55566677888888874 66666543    356788898888877777678999999885


Q ss_pred             CCCCCCcc----eee----eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC---CeEEEEE--e------cCCCcee
Q psy17243        138 PQTHKDDE----RFT----VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG---GKLAQVL--V------GHTDHVS  198 (392)
Q Consensus       138 ~~~~~~~~----~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~--~------~~~~~v~  198 (392)
                      ........    .+.    ..++..+..++|.+.++.|+++-+..-..+|.+..   ...+...  .      .....+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            43221111    111    12556789999999988888888777777777754   2222111  1      1234578


Q ss_pred             EEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccc---------cceeEEEEcCCCeEEEEc
Q psy17243        199 CVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL---------GCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       199 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~dg~~~~~~  255 (392)
                      .++++|..+.+++.+..+..|..+| .+|+.+..+.-..         ..--.|+|.++|++.++.
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            8999999999999999999999999 5677665443211         246689999999988875

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.61  E-value=3e-05  Score=68.10  Aligned_cols=228  Identities=11%  Similarity=0.134  Sum_probs=133.0

Q ss_pred             CeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce-------------------------------------------eEEe
Q psy17243         28 TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV-------------------------------------------VSTF   64 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-------------------------------------------~~~~   64 (392)
                      .|+.+.|+++..-|+++...|.|.||.+...+.                                           ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            588999999888899999999999986532211                                           1112


Q ss_pred             cccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc-----------cceeEEEEeC-----CC---CEEEEe
Q psy17243         65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL-----------GPSKCLTVTH-----NM---KYIVSG  125 (392)
Q Consensus        65 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~-----~~---~~l~~~  125 (392)
                      +...++|++++.+ |--++++|.++|.+.|.|++....++...           ..++++.|..     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            2345789999987 44599999999999999999888776421           1345666642     33   478999


Q ss_pred             cCCCcEEEEeCCCCCCC-Ccce---eeeccccceEEEE-EEcC-----------------C---CEEEEeeCCCcEEEEE
Q psy17243        126 DGDNSLRIWPTSPQTHK-DDER---FTVSHSEEITCFT-VTWD-----------------S---QYLITGSRDMSLKVWQ  180 (392)
Q Consensus       126 ~~d~~i~~~d~~~~~~~-~~~~---~~~~~~~~v~~~~-~~~~-----------------~---~~l~~~~~dg~i~i~d  180 (392)
                      +..|.+.+|.+...... ....   ....+..++..+. ++.+                 +   .-++....+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            99999999988521111 1111   1113455665555 3221                 0   1233334466899999


Q ss_pred             cCCCeEEEEEecCCCceeEEEEe----cCCCcEEEEecCCCeEEEEECCCCceeeeeccc----ccceeEEEEcCCCeEE
Q psy17243        181 VVGGKLAQVLVGHTDHVSCVAVA----VTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH----LGCVTCVKLAGDGTVA  252 (392)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~dg~~~  252 (392)
                      ..+.+..++..........+.+.    ...+..|++-..+|.+++|.+..-+.+..+.-.    ...+....++++|.++
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~  321 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF  321 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence            98888776654222222333442    135678888889999999999998888766542    2346677889999999


Q ss_pred             EEcC
Q psy17243        253 MSDL  256 (392)
Q Consensus       253 ~~~~  256 (392)
                      ++..
T Consensus       322 ~~~g  325 (395)
T PF08596_consen  322 YWTG  325 (395)
T ss_dssp             EE-S
T ss_pred             EEeC
Confidence            8865

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.61  E-value=8.1e-05  Score=68.22  Aligned_cols=242  Identities=13%  Similarity=0.088  Sum_probs=144.4

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcC--eeEEEecC--CCCeEEEEe---------CCCeEEEEeCCCCceeEEecccc
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNT--VSCVAISP--NSIFAVSGS---------EDNTAKVWGLTLGSVVSTFKSHQ   68 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~--~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~~~   68 (392)
                      ++.+|.|.-+|.++++.+..+......  -..+.-+|  .+..++.++         .+|.+..+|.++|+.+-.++...
T Consensus       116 ~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~  195 (488)
T cd00216         116 GTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTE  195 (488)
T ss_pred             ecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccC
Confidence            456899999999999998877643221  00111122  123455543         36889999999999887665321


Q ss_pred             c--------------------ce-EEEEEecCCCEEEEEeCCC------------------eEEEEEcCCceeeeecccc
Q psy17243         69 S--------------------TI-LAVAVLSDSRRVVTSDKAG------------------VIAVWVADNAQLLYSALGP  109 (392)
Q Consensus        69 ~--------------------~v-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~  109 (392)
                      .                    .+ ...++.+.+..++.++.++                  .|.-+|.++++.+..+...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~  275 (488)
T cd00216         196 PDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT  275 (488)
T ss_pred             CCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC
Confidence            1                    01 1234455566788887665                  7999999999988765421


Q ss_pred             ee---------EEEEe----CCCC---EEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEe---
Q psy17243        110 SK---------CLTVT----HNMK---YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITG---  170 (392)
Q Consensus       110 ~~---------~~~~~----~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---  170 (392)
                      ..         ...+.    -++.   .+++++.+|.+..+|.++++..-.....      ...++.+|  ..++.+   
T Consensus       276 ~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~--~~vyv~~~~  347 (488)
T cd00216         276 PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP--GLVYLGAFH  347 (488)
T ss_pred             CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC--ceEEEcccc
Confidence            10         00111    1232   6788889999999999866543222211      01122232  233332   


Q ss_pred             ---------------eCCCcEEEEEcCCCeEEEEEecCC--------Cce--eEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        171 ---------------SRDMSLKVWQVVGGKLAQVLVGHT--------DHV--SCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       171 ---------------~~dg~i~i~d~~~~~~~~~~~~~~--------~~v--~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                                     ..+|.+.-+|+.+++.+-+.....        .+.  ..+..   .+.+++.++.||.|+.+|..
T Consensus       348 ~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~  424 (488)
T cd00216         348 IPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDAT  424 (488)
T ss_pred             ccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECC
Confidence                           246788999999998776654321        111  12222   35678888899999999999


Q ss_pred             CCceeeeeccccccee--EEEEcCCCeEEEEc
Q psy17243        226 TGGEEHFLAGHLGCVT--CVKLAGDGTVAMSD  255 (392)
Q Consensus       226 ~~~~~~~~~~~~~~v~--~~~~~~dg~~~~~~  255 (392)
                      +|+.+.+.+.. ..+.  =+.+..+|++.+..
T Consensus       425 tG~~lW~~~~~-~~~~a~P~~~~~~g~~yv~~  455 (488)
T cd00216         425 TGKELWKFRTP-SGIQATPMTYEVNGKQYVGV  455 (488)
T ss_pred             CCceeeEEECC-CCceEcCEEEEeCCEEEEEE
Confidence            99998877642 2222  22344566655543

The alignment model contains an 8-bladed beta-propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.58  E-value=2.2e-05  Score=71.10  Aligned_cols=205  Identities=11%  Similarity=-0.006  Sum_probs=124.9

Q ss_pred             CCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC----CeEEEEEcCCceeeeecccceeEEEEeCCCCEE
Q psy17243         47 DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA----GVIAVWVADNAQLLYSALGPSKCLTVTHNMKYI  122 (392)
Q Consensus        47 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l  122 (392)
                      .+.+.+.|.++.+...++.. .+....++++|+++++++.+.+    .++...+..+...+..+.-. ....+.++|++.
T Consensus       214 ~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~-~iea~vkdGK~~  291 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA-RIEEAVKAGKFK  291 (635)
T ss_pred             eEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH-HHHHhhhCCCEE
Confidence            46677778777777666653 3344678899999999887632    22332222221111111100 011334567766


Q ss_pred             EEecCCCcEEEEeCCCCC-CCCcceeeeccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcCCCeE------------EE
Q psy17243        123 VSGDGDNSLRIWPTSPQT-HKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVGGKL------------AQ  188 (392)
Q Consensus       123 ~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~------------~~  188 (392)
                      ..  .++.|.+.|..+.. ..........-......+.++|||+++++++. +.++.|+|+.+.+.            ..
T Consensus       292 ~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva  369 (635)
T PRK02888        292 TI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA  369 (635)
T ss_pred             EE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence            66  36789999987410 01233333455677789999999999887765 88999999987542            23


Q ss_pred             EEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC----------Cceeeeecccccc-----eeEEEEcCCCeEEE
Q psy17243        189 VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET----------GGEEHFLAGHLGC-----VTCVKLAGDGTVAM  253 (392)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~-----v~~~~~~~dg~~~~  253 (392)
                      ...--.++ ...+|. .+++...+-.-|..|..||+.+          ...+..+..|-++     ...=.-.+||++++
T Consensus       370 evevGlGP-LHTaFD-g~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~  447 (635)
T PRK02888        370 EPELGLGP-LHTAFD-GRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLV  447 (635)
T ss_pred             eeccCCCc-ceEEEC-CCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEE
Confidence            33322233 346787 5677778888899999999876          2334444433332     22233478999999


Q ss_pred             EcCC
Q psy17243        254 SDLP  257 (392)
Q Consensus       254 ~~~~  257 (392)
                      +.-+
T Consensus       448 ~~nk  451 (635)
T PRK02888        448 SLNK  451 (635)
T ss_pred             Eccc
Confidence            8754

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.57  E-value=5.2e-05  Score=65.67  Aligned_cols=213  Identities=17%  Similarity=0.191  Sum_probs=126.7

Q ss_pred             CeEEEEECCCccceeeecc-CCcCeeEEEe---cCC----CCeEEEEeC----------CCeEEEEeCCCC----ceeEE
Q psy17243          6 CLVNVWQMNSHELQSTMEG-HLNTVSCVAI---SPN----SIFAVSGSE----------DNTAKVWGLTLG----SVVST   63 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~-h~~~v~~~~~---~~~----~~~l~~~~~----------dg~v~iwd~~~~----~~~~~   63 (392)
                      ..|++.|..+.+.+..+.- ....+.+++.   ..+    ..+|+.|..          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            4689999988887766542 2334555444   322    467777643          288999999884    22222


Q ss_pred             e--cccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCce-eee--ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCC
Q psy17243         64 F--KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ-LLY--SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSP  138 (392)
Q Consensus        64 ~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  138 (392)
                      +  ...+++|++++-. ++ +|+++. .+.|.+|++...+ ...  ....+.....+...++++++|+....+.++..+.
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence            2  2357889999877 34 444443 5889999998887 433  2333444555555577999999999999886653


Q ss_pred             CCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC-------C--eE--EEEEecCCCceeEE---EEec
Q psy17243        139 QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG-------G--KL--AQVLVGHTDHVSCV---AVAV  204 (392)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~--~~--~~~~~~~~~~v~~~---~~~~  204 (392)
                      ................++++.+-++++.++++..+|.+.++....       +  +.  ...+. ....|+++   .+.|
T Consensus       159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~  237 (321)
T PF03178_consen  159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIP  237 (321)
T ss_dssp             TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred             cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeee
Confidence            222122222233466788899987777999999999999998752       1  22  22222 34567766   4443


Q ss_pred             C--CC-----cEEEEecCCCeEEEE
Q psy17243        205 T--NK-----SLVVSGSKDSNLIVW  222 (392)
Q Consensus       205 ~--~~-----~~l~~~~~dg~i~iw  222 (392)
                      .  ..     ..++.++.+|.|.+.
T Consensus       238 ~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  238 RSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cCCCCcccccceEEEEecCCEEEEE
Confidence            1  11     236666778887733

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.53  E-value=6e-05  Score=66.15  Aligned_cols=216  Identities=13%  Similarity=0.068  Sum_probs=125.6

Q ss_pred             cCCCCeEEEE---------eCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee
Q psy17243         35 SPNSIFAVSG---------SEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS  105 (392)
Q Consensus        35 ~~~~~~l~~~---------~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  105 (392)
                      |||+++++..         +..+.+.|||+++++....... ...+....|+|+|+.++... ++.|.++++.+++..+-
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            5777776653         2346799999999766544443 67789999999999988876 57899998877654321


Q ss_pred             -cc-------------------cceeEEEEeCCCCEEEEecCC-C-----------------------------------
Q psy17243        106 -AL-------------------GPSKCLTVTHNMKYIVSGDGD-N-----------------------------------  129 (392)
Q Consensus       106 -~~-------------------~~~~~~~~~~~~~~l~~~~~d-~-----------------------------------  129 (392)
                       ..                   .....+.|+|++++|+....| .                                   
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence             11                   123578899999988875432 1                                   


Q ss_pred             cEEEEeCCCCCCCCcceee---eccccceEEEEEEcCCCEEEEeeC-----CCcEEEEEcCCCeEEEEEec-CCCce---
Q psy17243        130 SLRIWPTSPQTHKDDERFT---VSHSEEITCFTVTWDSQYLITGSR-----DMSLKVWQVVGGKLAQVLVG-HTDHV---  197 (392)
Q Consensus       130 ~i~~~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~-~~~~v---  197 (392)
                      .+.++|+.+++... ....   ......+..+.|.++++.|+..-.     ...+.++|..+++....+.. ....|   
T Consensus       159 ~l~v~~~~~~~~~~-~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~  237 (353)
T PF00930_consen  159 SLFVVDLASGKTTE-LDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY  237 (353)
T ss_dssp             EEEEEESSSTCCCE-E---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred             EEEEEECCCCcEEE-eeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence            23344554332221 1111   134556788899999884444322     23467778877654333321 22222   


Q ss_pred             eEEEEe-cCCCcEEEEecCCCe--EEEEECCCCceeeeecccccceeE-EEEcCCCeEEEE
Q psy17243        198 SCVAVA-VTNKSLVVSGSKDSN--LIVWDMETGGEEHFLAGHLGCVTC-VKLAGDGTVAMS  254 (392)
Q Consensus       198 ~~~~~~-~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~dg~~~~~  254 (392)
                      ....+. +.+..++.....+|.  |.+++...+. ...+....-.|.. +.+++++..+..
T Consensus       238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf  297 (353)
T PF00930_consen  238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYF  297 (353)
T ss_dssp             SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEE
T ss_pred             cccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEE
Confidence            244554 567777777778876  4455655444 3344444456644 677787665554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1920|consensus

Probab=98.48  E-value=4.1e-05  Score=73.11  Aligned_cols=195  Identities=8%  Similarity=0.040  Sum_probs=132.1

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcC----Cce
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD----NAQ  101 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~  101 (392)
                      ...|.++.|..+..-++.+...|.|.+-|.++.... ....-...|.+++|+||.+.++..+..+++.+-.-.    ..+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            368999999998888888889999999988776443 333357789999999999999999888887765321    000


Q ss_pred             ee----------------------ee---------------------cccceeEEEEeCCCCEEEEe-----cCCCcEEE
Q psy17243        102 LL----------------------YS---------------------ALGPSKCLTVTHNMKYIVSG-----DGDNSLRI  133 (392)
Q Consensus       102 ~~----------------------~~---------------------~~~~~~~~~~~~~~~~l~~~-----~~d~~i~~  133 (392)
                      .+                      +.                     ...+-..+.|--||.++++.     ...+.|++
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence            00                      00                     01122458899999999983     33489999


Q ss_pred             EeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee---CCCcEEEEEcCCCeEE----EEEecCCCceeEEEEecCC
Q psy17243        134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS---RDMSLKVWQVVGGKLA----QVLVGHTDHVSCVAVAVTN  206 (392)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~  206 (392)
                      ||-+ +....   ........-.+++|-|.|..+++-.   .|+.|.+|.- +|-.-    ..+......+..++|+ .+
T Consensus       227 ~drE-g~Lns---~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wn-s~  300 (1265)
T KOG1920|consen  227 YDRE-GALNS---TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWN-SN  300 (1265)
T ss_pred             eccc-chhhc---ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeec-CC
Confidence            9976 21111   1112234446789999999888754   3567888874 33222    1223334458999999 78


Q ss_pred             CcEEEE---ecCCCeEEEEECCCC
Q psy17243        207 KSLVVS---GSKDSNLIVWDMETG  227 (392)
Q Consensus       207 ~~~l~~---~~~dg~i~iwd~~~~  227 (392)
                      +.+|+.   ......|++|-+.+.
T Consensus       301 sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  301 SDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCceeeeecccccceEEEEEecCe
Confidence            888877   445556999988764

>KOG2066|consensus

Probab=98.48  E-value=1.1e-05  Score=73.40  Aligned_cols=170  Identities=14%  Similarity=0.121  Sum_probs=118.2

Q ss_pred             cceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee
Q psy17243         69 STILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        69 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      ..+.+++++  ++.++-|..+|.+++++....-  .....+...   ..+|.++++|+.||+|.+..+-+.....    .
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~---~~~Gey~asCS~DGkv~I~sl~~~~~~~----~  108 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS---ILEGEYVASCSDDGKVVIGSLFTDDEIT----Q  108 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc---ccCCceEEEecCCCcEEEeeccCCccce----e
Confidence            446666664  6789999999999999876542  111111111   6689999999999999998776443332    2


Q ss_pred             eccccceEEEEEEcC-----CCEEEEeeCCCcEEEEEcCCC--eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEE
Q psy17243        149 VSHSEEITCFTVTWD-----SQYLITGSRDMSLKVWQVVGG--KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV  221 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  221 (392)
                      .....++.+++++|+     .+++++|+..| +.++.-+-.  +....+..-.++|.++.|.   +++++=++.+| |+|
T Consensus       109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v~v  183 (846)
T KOG2066|consen  109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDG-VKV  183 (846)
T ss_pred             EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCC-cEE
Confidence            245688999999997     56899999888 777764321  1112355567899999997   77777776554 999


Q ss_pred             EECCCCceeeeecccccce------eEEEEcCCCeEEEE
Q psy17243        222 WDMETGGEEHFLAGHLGCV------TCVKLAGDGTVAMS  254 (392)
Q Consensus       222 wd~~~~~~~~~~~~~~~~v------~~~~~~~dg~~~~~  254 (392)
                      ||..+.+.+..++.....+      ..+.|.++.++++.
T Consensus       184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG  222 (846)
T KOG2066|consen  184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG  222 (846)
T ss_pred             EeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe
Confidence            9999998887766443332      36778877766553

>KOG1832|consensus

Probab=98.43  E-value=1.2e-07  Score=86.70  Aligned_cols=232  Identities=12%  Similarity=0.113  Sum_probs=151.6

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCC--eEEEEeCCC-CceeEEecccccceEEEEEe
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDN--TAKVWGLTL-GSVVSTFKSHQSTILAVAVL   77 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg--~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~   77 (392)
                      +|+..|.|+++++.+|.......+|.++|+-+.-+.+|..+++.+.-.  ...+|+..+ +...+++.    .-.++.|+
T Consensus      1118 vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFs 1193 (1516)
T KOG1832|consen 1118 VGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFS 1193 (1516)
T ss_pred             eeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc----ccceeehh
Confidence            477899999999999999999999999999999999998777654432  477998754 44445554    23567887


Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCceeeeeccc-------ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeec
Q psy17243         78 SDSRRVVTSDKAGVIAVWVADNAQLLYSALG-------PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS  150 (392)
Q Consensus        78 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  150 (392)
                      .....-+.|.......+||++++..+.++..       .-++..|+|...+++-   ||  .+||.+..+..   ..+..
T Consensus      1194 n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aI---h~FD~ 1265 (1516)
T KOG1832|consen 1194 NSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAI---HRFDQ 1265 (1516)
T ss_pred             hhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHH---hhhhh
Confidence            7655556677777899999999988776433       2357889998887753   34  37999844222   22211


Q ss_pred             cccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEec------C---------
Q psy17243        151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS------K---------  215 (392)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~---------  215 (392)
                      .... ..=.|+|.|+.++..+     .|||+++.+.++....-.  -..+.|+ ..|..++..-      .         
T Consensus      1266 ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFN-stG~VmYa~~~~~d~~sdvh~~r~k~ 1336 (1516)
T KOG1832|consen 1266 FTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFN-STGDVMYAMLNIEDVMSDVHTRRVKH 1336 (1516)
T ss_pred             heec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEec-cCccchhhhhhhhhhhhhhccccccc
Confidence            1111 1224899999888866     589999988776654322  1345566 4444443321      0         


Q ss_pred             --CCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEE
Q psy17243        216 --DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       216 --dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                        -...+-+|....+.+.++.+ ..++..++-.|...++..
T Consensus      1337 p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~v 1376 (1516)
T KOG1832|consen 1337 PLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGV 1376 (1516)
T ss_pred             chhhhhccccccccccceeeec-ccchhhhhcCCccceEEE
Confidence              01244555555566666653 345556666665555443

>KOG3617|consensus

Probab=98.41  E-value=2.3e-05  Score=72.01  Aligned_cols=93  Identities=16%  Similarity=0.233  Sum_probs=75.2

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEE
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV   83 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   83 (392)
                      ..|.|.||- ++|++.+... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.......|+.+|..+.|+++|..+
T Consensus        39 r~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l  116 (1416)
T KOG3617|consen   39 RGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVL  116 (1416)
T ss_pred             CCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeE
Confidence            346666664 4566544433 23346779999998889999889999999988877777777899999999999999999


Q ss_pred             EEEeCCCeEEEEEcC
Q psy17243         84 VTSDKAGVIAVWVAD   98 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~   98 (392)
                      +++..-|.+.+|...
T Consensus       117 ~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  117 MTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EEcCCCceeEEEEee
Confidence            999999999999776

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.38  E-value=2.2e-05  Score=69.46  Aligned_cols=74  Identities=20%  Similarity=0.219  Sum_probs=51.4

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCc
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA  100 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  100 (392)
                      ....|.+++++|+...|+.|+.||+|.+||...+...  +....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            5667778888887777788888888888876554322  2123445677778888877778777788888876543

>KOG1008|consensus

Probab=98.38  E-value=3.8e-07  Score=80.60  Aligned_cols=180  Identities=13%  Similarity=0.214  Sum_probs=118.8

Q ss_pred             CCccCCeEEEEECCCccce--eeeccCCcCeeEEEecC-CCCeEEEEe----CCCeEEEEeCCCC--ceeE--Eecc-cc
Q psy17243          1 MGGMDCLVNVWQMNSHELQ--STMEGHLNTVSCVAISP-NSIFAVSGS----EDNTAKVWGLTLG--SVVS--TFKS-HQ   68 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~-~~~~l~~~~----~dg~v~iwd~~~~--~~~~--~~~~-~~   68 (392)
                      +|..+|.|-+-.+....--  ....+|....++++|++ |...||+|-    .|..+.|||+.++  .+..  .+.. ..
T Consensus        75 vG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l  154 (783)
T KOG1008|consen   75 VGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTL  154 (783)
T ss_pred             hccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccc
Confidence            4677888888877543222  23446888999999999 667777763    3567999999876  2221  1222 33


Q ss_pred             cceEEEEEecCCCEEEEEeCCCeEEEEEcCCc-eeeeecc-cceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcc
Q psy17243         69 STILAVAVLSDSRRVVTSDKAGVIAVWVADNA-QLLYSAL-GPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        69 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~  145 (392)
                      ....+++|..+.+.+++|.....+.++|++.. ....... ..+..+.+.| .++++++-. ||.|.+||.... ....+
T Consensus       155 ~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn-ienpl  232 (783)
T KOG1008|consen  155 DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN-IENPL  232 (783)
T ss_pred             cCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhh-hccHH
Confidence            45668899988888999999999999999843 2222333 2567788888 677776655 999999994211 11111


Q ss_pred             eee----eccccceEEEEEEcCC-CEEEEee-CCCcEEEEEcC
Q psy17243        146 RFT----VSHSEEITCFTVTWDS-QYLITGS-RDMSLKVWQVV  182 (392)
Q Consensus       146 ~~~----~~~~~~v~~~~~~~~~-~~l~~~~-~dg~i~i~d~~  182 (392)
                      ...    ......+..++|+|.. ..+++.. ..++|++||+.
T Consensus       233 ~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  233 QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            111    1123458899999963 2444444 46889999985

>KOG1645|consensus

Probab=98.37  E-value=2.8e-06  Score=70.98  Aligned_cols=81  Identities=10%  Similarity=0.144  Sum_probs=72.4

Q ss_pred             eeeccccceEEEEEEcCCC-EEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        147 FTVSHSEEITCFTVTWDSQ-YLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      +...+...|..++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-++.+++.+|..+|.|.|||++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            5557788999999999876 7888999999999999999999888877 7899999998888999999999999999999


Q ss_pred             CCc
Q psy17243        226 TGG  228 (392)
Q Consensus       226 ~~~  228 (392)
                      ..+
T Consensus       267 ~~~  269 (463)
T KOG1645|consen  267 QPE  269 (463)
T ss_pred             CCC
Confidence            765

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.37  E-value=0.00045  Score=58.44  Aligned_cols=146  Identities=12%  Similarity=0.094  Sum_probs=91.3

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee----------
Q psy17243         36 PNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS----------  105 (392)
Q Consensus        36 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----------  105 (392)
                      ..++.|+.|..+| +.+++.........+. +...|..+...|+-+.+++-+ |+.+.++++........          
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3567899998888 8999983333333332 234499999999887777765 49999999876544331          


Q ss_pred             -----cccceeEEEEe----CCCCEEEEecCCCcEEEEeCCCCCCCC-cceeeeccccceEEEEEEcCCCEEEEeeCCCc
Q psy17243        106 -----ALGPSKCLTVT----HNMKYIVSGDGDNSLRIWPTSPQTHKD-DERFTVSHSEEITCFTVTWDSQYLITGSRDMS  175 (392)
Q Consensus       106 -----~~~~~~~~~~~----~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (392)
                           ......+..+.    ..+...++......|.+|......... .......-...+..++|.  ++.++.|..+ .
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~  158 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-G  158 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-c
Confidence                 11111222233    344444455555689999887542222 222233456788899998  5577777655 4


Q ss_pred             EEEEEcCCCeEE
Q psy17243        176 LKVWQVVGGKLA  187 (392)
Q Consensus       176 i~i~d~~~~~~~  187 (392)
                      ..+.|+.++...
T Consensus       159 f~~idl~~~~~~  170 (275)
T PF00780_consen  159 FYLIDLNTGSPS  170 (275)
T ss_pred             eEEEecCCCCce
Confidence            778888766543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.35  E-value=4.6e-06  Score=73.56  Aligned_cols=93  Identities=17%  Similarity=0.242  Sum_probs=72.1

Q ss_pred             EEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEE
Q psy17243        132 RIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       132 ~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  211 (392)
                      .+|++...+..............+.+++++|+...|+.|+.||.|.+||...+...  +....-..+.++|+ +++.+++
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWH-p~gai~~  315 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWH-PDGAIFV  315 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEc-CCCcEEE
Confidence            45666544333333344567889999999999999999999999999998766333  22345567889999 7888999


Q ss_pred             EecCCCeEEEEECCCC
Q psy17243        212 SGSKDSNLIVWDMETG  227 (392)
Q Consensus       212 ~~~~dg~i~iwd~~~~  227 (392)
                      .|+..|.+.+||+.-.
T Consensus       316 V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  316 VGSEQGELQCFDMALS  331 (545)
T ss_pred             EEcCCceEEEEEeecC
Confidence            9999999999998743

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.33  E-value=0.00018  Score=63.90  Aligned_cols=178  Identities=14%  Similarity=0.080  Sum_probs=109.6

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEe---CC-CeEEEEeCCCCceeEEecccccceEEEEEecCCCE
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS---ED-NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~---~d-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      .+.+=|.. +.....+..-...+..-+|+|+++.++..+   .. ..+.++++++++....+. ..+.-..-+|+|||++
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence            34444444 555566665666788889999998665442   22 459999999887765555 3444456789999987


Q ss_pred             EEEE-eCCCe--EEEEEcCCceeee--ecccceeEEEEeCCCCEEEEecC-CCc--EEEEeCCCCCCCCcceeeeccccc
Q psy17243         83 VVTS-DKAGV--IAVWVADNAQLLY--SALGPSKCLTVTHNMKYIVSGDG-DNS--LRIWPTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        83 l~~~-~~d~~--i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~~~  154 (392)
                      |+.+ ..||.  |++.|+.+++..+  ...+....-.|+|+|++++..+. .|.  |.+++.+....   ..........
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~  328 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGN  328 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCC
Confidence            7654 45554  6666887776433  22233346778999998887655 444  55555553322   2222222222


Q ss_pred             eEEEEEEcCCCEEEEeeC-CCc--EEEEEcCCCeEEEEE
Q psy17243        155 ITCFTVTWDSQYLITGSR-DMS--LKVWQVVGGKLAQVL  190 (392)
Q Consensus       155 v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~  190 (392)
                       ..-.++|||++++..+. +|.  |.+.|+.++...+.+
T Consensus       329 -~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l  366 (425)
T COG0823         329 -SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL  366 (425)
T ss_pred             -cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence             26679999998887764 344  666776665543333

>KOG3621|consensus

Probab=98.32  E-value=1.9e-05  Score=71.05  Aligned_cols=156  Identities=14%  Similarity=0.108  Sum_probs=107.7

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL  103 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  103 (392)
                      |...|.--+++..+++++.|+.-|.+++|+-..++....-. +..+.+..+..+++..+++.|+..|.|.++-+......
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            55566666777788999999999999999977666543322 23455666778888888999999999999987764321


Q ss_pred             ---------eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCC-CCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC
Q psy17243        104 ---------YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSP-QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD  173 (392)
Q Consensus       104 ---------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  173 (392)
                               ..+...+++++|++++..+++|...|.|.+-.+.. ..............+.|..+.+. ++.+|++....
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~r  190 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLTR  190 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhhh
Confidence                     12345789999999999999999999999988765 22222223333456778777765 33334433322


Q ss_pred             CcEEEEEcCC
Q psy17243        174 MSLKVWQVVG  183 (392)
Q Consensus       174 g~i~i~d~~~  183 (392)
                        -.+++.+.
T Consensus       191 --~~Lc~tE~  198 (726)
T KOG3621|consen  191 --CILCQTEA  198 (726)
T ss_pred             --hheeecch
Confidence              34555543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.31  E-value=0.0012  Score=54.03  Aligned_cols=198  Identities=11%  Similarity=0.115  Sum_probs=114.8

Q ss_pred             eeccCCcCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCCceeEEeccc-ccceEEEEEecCCCEEEEEeCCCeEEEEEcC
Q psy17243         21 TMEGHLNTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLGSVVSTFKSH-QSTILAVAVLSDSRRVVTSDKAGVIAVWVAD   98 (392)
Q Consensus        21 ~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   98 (392)
                      .+.+-...+..+.|+|+.+ ++++....+.|..++. +|+.++.+... .+..-.+++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4555556699999999754 6666777888988886 57888877643 3567889998888777766668999999884


Q ss_pred             Cce----e--eeec--------ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcce--e------eeccccceE
Q psy17243         99 NAQ----L--LYSA--------LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER--F------TVSHSEEIT  156 (392)
Q Consensus        99 ~~~----~--~~~~--------~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~------~~~~~~~v~  156 (392)
                      ...    .  ...+        +.....++|++.++.|+++-+..-..+|.+..........  .      .......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321    0  1111        1235789999998888888887777777765311111110  0      011334578


Q ss_pred             EEEEEcC-CCEEEEeeCCCcEEEEEcCCCeEEEEEecCC---------CceeEEEEecCCCcEEEEecCCCeEEEE
Q psy17243        157 CFTVTWD-SQYLITGSRDMSLKVWQVVGGKLAQVLVGHT---------DHVSCVAVAVTNKSLVVSGSKDSNLIVW  222 (392)
Q Consensus       157 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~iw  222 (392)
                      .++++|. +.+++....+..|..+| .+|+++..+.-..         ...-.|+|. +++++.+++ .-+..++|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d-~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD-PDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE--TT--EEEEE-TTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC-CCCCEEEEc-CCceEEEe
Confidence            8999987 45666677788899999 6777766553222         246788998 566655544 45555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=0.0012  Score=58.43  Aligned_cols=216  Identities=14%  Similarity=0.080  Sum_probs=146.1

Q ss_pred             eEEEecCCCCe-EEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeC---CCeEEEEEcCCceeeee
Q psy17243         30 SCVAISPNSIF-AVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK---AGVIAVWVADNAQLLYS  105 (392)
Q Consensus        30 ~~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~  105 (392)
                      ..++.++.+.. .++...++.|.+.|..+.+......... .-..++++++++.+.++..   ++.+.+.|..+.+.+..
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            46677777764 4444556899999988877777665333 5678999999988887766   68899999998887766


Q ss_pred             ccc--ceeEEEEeCCCCEEEEec-CCCcEEEEeCCCCCCCC-cceeeeccccceEEEEEEcCCCEEEEeeCC---CcEEE
Q psy17243        106 ALG--PSKCLTVTHNMKYIVSGD-GDNSLRIWPTSPQTHKD-DERFTVSHSEEITCFTVTWDSQYLITGSRD---MSLKV  178 (392)
Q Consensus       106 ~~~--~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i  178 (392)
                      ...  ....+++.|+++.+++.. .++.|.++|........ ..............+.+.|+++++++....   +.+..
T Consensus       156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~  235 (381)
T COG3391         156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK  235 (381)
T ss_pred             EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence            432  237899999999777766 68999999976443331 111112233445678899999977776654   58999


Q ss_pred             EEcCCCeEEEE-EecCCCceeEEEEecCCCcEEEEe-cCCCeEEEEECCCCceeeeeccccc---ceeEEEEcC
Q psy17243        179 WQVVGGKLAQV-LVGHTDHVSCVAVAVTNKSLVVSG-SKDSNLIVWDMETGGEEHFLAGHLG---CVTCVKLAG  247 (392)
Q Consensus       179 ~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~  247 (392)
                      .|..++..... ..........+...| .+..+... +..+.+.+.|..+.+....+.....   .+..+++.+
T Consensus       236 id~~~~~v~~~~~~~~~~~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~  308 (381)
T COG3391         236 IDTATGNVTATDLPVGSGAPRGVAVDP-AGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP  308 (381)
T ss_pred             EeCCCceEEEeccccccCCCCceeECC-CCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence            99988876665 221111455678884 45544444 5568999999988877766543322   344555444

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.25  E-value=0.00048  Score=63.23  Aligned_cols=224  Identities=14%  Similarity=0.109  Sum_probs=130.9

Q ss_pred             CccCCeEEEEECCCccceeeeccCCc------Cee--EEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccc---
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLN------TVS--CVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQST---   70 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~------~v~--~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---   70 (392)
                      ++.++.|.-.|.++++.+..+.....      .+.  .+... ++..++.++.++.|.-+|.++|+.+-++......   
T Consensus        67 ~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~  145 (488)
T cd00216          67 TTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPG  145 (488)
T ss_pred             eCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcc
Confidence            45678999999999998877654322      110  11111 2257778888999999999999998777643221   


Q ss_pred             --eE-EEEEecCCCEEEEEe---------CCCeEEEEEcCCceeeeecccce------------------------eEEE
Q psy17243         71 --IL-AVAVLSDSRRVVTSD---------KAGVIAVWVADNAQLLYSALGPS------------------------KCLT  114 (392)
Q Consensus        71 --v~-~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~------------------------~~~~  114 (392)
                        +. ...+.  +..++.++         .++.+..+|..+++.+.......                        ....
T Consensus       146 ~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa  223 (488)
T cd00216         146 YTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPT  223 (488)
T ss_pred             eEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCee
Confidence              11 12222  23455554         36789999999998876543210                        1234


Q ss_pred             EeCCCCEEEEecCCC------------------cEEEEeCCCCCCCCcceeeeccc----cceEEEEEE----cCCC---
Q psy17243        115 VTHNMKYIVSGDGDN------------------SLRIWPTSPQTHKDDERFTVSHS----EEITCFTVT----WDSQ---  165 (392)
Q Consensus       115 ~~~~~~~l~~~~~d~------------------~i~~~d~~~~~~~~~~~~~~~~~----~~v~~~~~~----~~~~---  165 (392)
                      +.+.+..+++++.++                  .|.-+|..+++..-..... .+.    .......+.    -++.   
T Consensus       224 ~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~  302 (488)
T cd00216         224 YDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT-PHDLWDYDGPNQPSLADIKPKDGKPVP  302 (488)
T ss_pred             EeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC-CCCCcccccCCCCeEEeccccCCCeeE
Confidence            455567788887665                  6888888765443221111 110    000000111    1233   


Q ss_pred             EEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEE-----------------ecCCCeEEEEECCCCc
Q psy17243        166 YLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS-----------------GSKDSNLIVWDMETGG  228 (392)
Q Consensus       166 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-----------------~~~dg~i~iwd~~~~~  228 (392)
                      .+++++.+|.+..+|.++++.+-.....   ...++.+ + +.+++.                 ...+|.|.-.|+.+++
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~-~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYD-P-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee---ccccccC-C-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence            6788889999999999999988765421   1112333 1 222221                 1235778888888888


Q ss_pred             eeeeec
Q psy17243        229 EEHFLA  234 (392)
Q Consensus       229 ~~~~~~  234 (392)
                      .+-+..
T Consensus       378 ~~W~~~  383 (488)
T cd00216         378 VVWEKR  383 (488)
T ss_pred             EeeEee
Confidence            766554

The alignment model contains an 8-bladed beta-propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.21  E-value=0.00048  Score=62.80  Aligned_cols=172  Identities=10%  Similarity=0.017  Sum_probs=109.0

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCC----eEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDN----TAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      .+.+.+.|.++.+...++.--. .-..++++|+++++++.+.+.    ++..-+..+...+..+...  .+  -++.++|
T Consensus       214 ~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdG  288 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAG  288 (635)
T ss_pred             eEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCC
Confidence            4677888988888877766433 446789999999998876432    2222222221111111100  00  0234577


Q ss_pred             CEEEEEeCCCeEEEEEcCC-----ceeeeecc--cceeEEEEeCCCCEEEEecC-CCcEEEEeCCCCCCC--------Cc
Q psy17243         81 RRVVTSDKAGVIAVWVADN-----AQLLYSAL--GPSKCLTVTHNMKYIVSGDG-DNSLRIWPTSPQTHK--------DD  144 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~-----~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~--------~~  144 (392)
                      ++...  .++.|.+.|..+     .+.+..+.  .....+.++|||+++++++. +..+.++|+......        ..
T Consensus       289 K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~  366 (635)
T PRK02888        289 KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA  366 (635)
T ss_pred             CEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence            77665  367899999988     34444433  34568999999999888766 899999999753320        00


Q ss_pred             ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                      +.....-.......+|.++|+...+..-|..|..||+.+
T Consensus       367 vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        367 VVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            111112233344567888888777888899999999876

>KOG4649|consensus

Probab=98.21  E-value=0.0017  Score=51.83  Aligned_cols=99  Identities=9%  Similarity=-0.040  Sum_probs=69.5

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      |+..|.+++.+.++|.+...+..-..--......+++..+..++.|++.+..|..+..++...+...+...+-+..|-..
T Consensus        69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~  148 (354)
T KOG4649|consen   69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG  148 (354)
T ss_pred             EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCc
Confidence            67788999999999988877764332222344567888999999999999999999999888775544444555666444


Q ss_pred             EEEEEeCCCeEEEEEcCCc
Q psy17243         82 RVVTSDKAGVIAVWVADNA  100 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~  100 (392)
                      .|..+...|.+.--.....
T Consensus       149 sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  149 SLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             eEEEEeccceEEEEccCCC
Confidence            5555666666555544443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.21  E-value=0.002  Score=52.49  Aligned_cols=193  Identities=13%  Similarity=0.061  Sum_probs=120.7

Q ss_pred             cceeeeccCCc--CeeEEEecCCCCeEEEEeCCC--eEEEEeCCCCceeEEecccc-cceEEEEEecCCCEEEEEeCCCe
Q psy17243         17 ELQSTMEGHLN--TVSCVAISPNSIFAVSGSEDN--TAKVWGLTLGSVVSTFKSHQ-STILAVAVLSDSRRVVTSDKAGV   91 (392)
Q Consensus        17 ~~~~~~~~h~~--~v~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~   91 (392)
                      +.+.++. |..  -...+.|..++.++-+.+.-|  .|+.+|+++++......-.. ---..++.. +++.....=.++.
T Consensus        34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~  111 (264)
T PF05096_consen   34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred             EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence            3444443 433  346788877888888877776  69999999998876655322 112334444 2344445567889


Q ss_pred             EEEEEcCCceeeeeccc--ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeec--cccceEEEEEEcCCCEE
Q psy17243         92 IAVWVADNAQLLYSALG--PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS--HSEEITCFTVTWDSQYL  167 (392)
Q Consensus        92 i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l  167 (392)
                      ..+||..+.+.+.++.-  .-..++  .+++.|+.......|+++|..+......+.....  .-..++-+.+. +|...
T Consensus       112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy  188 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY  188 (264)
T ss_dssp             EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred             EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence            99999999888776543  334555  6778888888889999999875444333333221  11234556665 56555


Q ss_pred             EEeeCCCcEEEEEcCCCeEEEEEec---------------CCCceeEEEEecCCCcEEEEec
Q psy17243        168 ITGSRDMSLKVWQVVGGKLAQVLVG---------------HTDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       168 ~~~~~dg~i~i~d~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      +=.-....|...|..+|+.+..+.-               ...-.+.|++.|..+.+++||-
T Consensus       189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            5555677899999999998876521               1245789999988888888884

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1008|consensus

Probab=98.20  E-value=4.5e-07  Score=80.13  Aligned_cols=195  Identities=13%  Similarity=0.176  Sum_probs=131.1

Q ss_pred             CcCeeEEEecCCC--CeEEEEeCCCeEEEEeCCCCce--eEEecccccceEEEEEecCC-CEEEEEe----CCCeEEEEE
Q psy17243         26 LNTVSCVAISPNS--IFAVSGSEDNTAKVWGLTLGSV--VSTFKSHQSTILAVAVLSDS-RRVVTSD----KAGVIAVWV   96 (392)
Q Consensus        26 ~~~v~~~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~----~d~~i~iwd   96 (392)
                      ...+.|+++..+.  ..++.|..+|.|-+-.+....-  .....++..+.++++|.+-. +.|++|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            4567788776643  4788999999999988764422  23445677889999998854 4555552    356799999


Q ss_pred             cCCcee--e-----ee-cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc-CCCEE
Q psy17243         97 ADNAQL--L-----YS-ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW-DSQYL  167 (392)
Q Consensus        97 ~~~~~~--~-----~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l  167 (392)
                      +.++-.  .     .. ......+++|..+.+.+.+|.....++++|++.......    .-....+..+.+.| .++++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~----svnTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS----SVNTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh----hhhhhhcccceecCCCCCce
Confidence            987721  1     11 222445788888889999999999999999973221111    11233556677777 67788


Q ss_pred             EEeeCCCcEEEEE-cCCCe-EEEEEecCC----CceeEEEEecCCCcEEEEecC-CCeEEEEECC
Q psy17243        168 ITGSRDMSLKVWQ-VVGGK-LAQVLVGHT----DHVSCVAVAVTNKSLVVSGSK-DSNLIVWDME  225 (392)
Q Consensus       168 ~~~~~dg~i~i~d-~~~~~-~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~  225 (392)
                      ++-. ||.|.+|| .++-+ ++..+...+    ..+..++|+|....++++... .++|+.+|+.
T Consensus       212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            7766 99999999 43322 222222122    248899999877667776665 4789999986

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.19  E-value=0.0041  Score=55.55  Aligned_cols=203  Identities=12%  Similarity=0.078  Sum_probs=113.9

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce-------eEEecccccceEEEEEecC
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV-------VSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~   79 (392)
                      .|+||+.. |+++..+.-..+.|.++.|+.+.. |+.-..||.+++||+. |+.       +....-.+..+....+..+
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence            58999864 677777654448999999998765 5556689999999986 333       1111111222333333334


Q ss_pred             CCEEEEEeCCCeEEEEEcCCce-eeee---ccccee----------EEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcc
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQ-LLYS---ALGPSK----------CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~-~~~~---~~~~~~----------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  145 (392)
                      |  ++.-..++.+.+..-.... ..+.   ......          ...++.+....+....++.+.+.+-...   .. 
T Consensus       139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~---~~-  212 (410)
T PF04841_consen  139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF---KQ-  212 (410)
T ss_pred             C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---cc-
Confidence            5  3333345555444322211 1111   111000          0223344444455555556664443211   00 


Q ss_pred             eeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecC-CCceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        146 RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH-TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                         ....+++..+++||++++++.-..+|.+.+.+..-.+.+..+... ......+.|+ .++..++.-  ...|.+...
T Consensus       213 ---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC-G~dav~l~~--~~~l~lvg~  286 (410)
T PF04841_consen  213 ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC-GNDAVVLSW--EDELLLVGP  286 (410)
T ss_pred             ---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE-CCCcEEEEe--CCEEEEECC
Confidence               123468999999999999999999999999887666666555433 3466788888 333333322  445666553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.18  E-value=0.00026  Score=66.85  Aligned_cols=139  Identities=17%  Similarity=0.209  Sum_probs=96.0

Q ss_pred             CCeEEEE-eCCCeEEEEeCCCCceeEEecccccc-eEEEEEec-----CCCEEEEEeCCCeEEEEEcCCce--eeee---
Q psy17243         38 SIFAVSG-SEDNTAKVWGLTLGSVVSTFKSHQST-ILAVAVLS-----DSRRVVTSDKAGVIAVWVADNAQ--LLYS---  105 (392)
Q Consensus        38 ~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~--~~~~---  105 (392)
                      .++|+.- .....|+-.|++.|+.+..+..+... |..++-..     +....+.|-.+..+..||.+-..  ++..   
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444443 34578999999999999999977654 55544321     13456788888999999987542  2211   


Q ss_pred             ---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEc
Q psy17243        106 ---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV  181 (392)
Q Consensus       106 ---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  181 (392)
                         ......|++-+.+| +||+|+.+|.|++||-..   ........+-..+|..+..+.||+++++.+ +..|.+++.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---KRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc---hhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence               11233566655555 799999999999999532   222333346679999999999999998877 457778775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.16  E-value=0.0024  Score=57.22  Aligned_cols=197  Identities=9%  Similarity=0.047  Sum_probs=101.8

Q ss_pred             CeEEEEECCCc------c----ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEE
Q psy17243          6 CLVNVWQMNSH------E----LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVA   75 (392)
Q Consensus         6 g~i~vwd~~~~------~----~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~   75 (392)
                      ..|+..|+++.      +    ..+.+.........+.++|++++++.+ .||.-.|+.....+...     .+.-...+
T Consensus         2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~v   75 (443)
T PF04053_consen    2 NEIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFV   75 (443)
T ss_dssp             TEEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEE
T ss_pred             CceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEE
Confidence            35677777554      1    122333355567899999999988885 57888898844333322     23446688


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      |.+ .+.+++-...+.|.++.--+.+....+..+..+-.+-. |..|+..+.+ .|.+||..+..   .....  .-.+|
T Consensus        76 w~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~---~i~~i--~v~~v  147 (443)
T PF04053_consen   76 WSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG-GNLLGVKSSD-FICFYDWETGK---LIRRI--DVSAV  147 (443)
T ss_dssp             E-T-SSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE--SSSEEEEETT-EEEEE-TTT-----EEEEE--SS-E-
T ss_pred             Eec-CccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc-CcEEEEECCC-CEEEEEhhHcc---eeeEE--ecCCC
Confidence            988 45677777788999974333333233333322222222 7777766554 89999997432   22222  22348


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCC-----------eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEE
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGG-----------KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV  221 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  221 (392)
                      ..+.|++++++++..+.+ .+.|++....           .....+..-...|.+.+|. .+ -++.+.. . .|+.
T Consensus       148 k~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~-~d-~fiYtT~-~-~lkY  219 (443)
T PF04053_consen  148 KYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWV-ED-CFIYTTS-N-HLKY  219 (443)
T ss_dssp             EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEE-TT-EEEEE-T-T-EEEE
T ss_pred             cEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEE-cC-EEEEEcC-C-eEEE
Confidence            999999999999998865 6788775432           0233333225788889998 33 4555443 3 6666

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.16  E-value=0.0049  Score=55.12  Aligned_cols=196  Identities=15%  Similarity=0.127  Sum_probs=110.0

Q ss_pred             eEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc-----ce-eE----EEEeCC
Q psy17243         49 TAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG-----PS-KC----LTVTHN  118 (392)
Q Consensus        49 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~-~~----~~~~~~  118 (392)
                      .|.||+ ..|+.+.++.-..+.|.++.|+.+ ..|++...||.++++|+.... ......     .+ .+    ..+..+
T Consensus        62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEEC-CCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            589998 457777776655589999999874 567778899999999986444 221111     11 11    122224


Q ss_pred             CCEEEEecCCCcEEEEeCCCCCCC-Ccc-eee---e-ccc-cceE-EEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEE
Q psy17243        119 MKYIVSGDGDNSLRIWPTSPQTHK-DDE-RFT---V-SHS-EEIT-CFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL  190 (392)
Q Consensus       119 ~~~l~~~~~d~~i~~~d~~~~~~~-~~~-~~~---~-~~~-~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  190 (392)
                      |  +++-..++.+.+.+--..... ... ...   . .+. .... ...++.+....+....++.+.+.+-...+.   +
T Consensus       139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence            4  333344555544422211100 000 000   0 000 0000 022344444444444555555444322211   2


Q ss_pred             ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccc-ccceeEEEEcCCCeEEEE
Q psy17243        191 VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH-LGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       191 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~dg~~~~~  254 (392)
                      . ..+++..++.| +++++++.-..+|.+.|...+-.+.+..+... ......|.|..+..+++.
T Consensus       214 ~-~~~~i~~iavS-png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~  276 (410)
T PF04841_consen  214 D-SDGPIIKIAVS-PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLS  276 (410)
T ss_pred             c-CCCCeEEEEEC-CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEE
Confidence            1 24689999999 77888888888999999987655555555433 346778999887665444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.13  E-value=0.00049  Score=47.59  Aligned_cols=100  Identities=12%  Similarity=0.184  Sum_probs=68.8

Q ss_pred             eeEEEecC-CC---CeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeee
Q psy17243         29 VSCVAISP-NS---IFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY  104 (392)
Q Consensus        29 v~~~~~~~-~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  104 (392)
                      |++|++.. ++   +.|++|+.|..|++|+-  .+.+.++. ..+.|.++.-... ..++.+..+|+|-+|+-....-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi   77 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI   77 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee
Confidence            66777765 32   57999999999999973  46777777 4567788877765 679999999999999764332222


Q ss_pred             ecccceeEEEEeC-C--C-CEEEEecCCCcEE
Q psy17243        105 SALGPSKCLTVTH-N--M-KYIVSGDGDNSLR  132 (392)
Q Consensus       105 ~~~~~~~~~~~~~-~--~-~~l~~~~~d~~i~  132 (392)
                      ..+..+.++.+.. +  | ..|++|-.+|.|-
T Consensus        78 KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   78 KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2333445554433 2  2 3688888888774

>KOG3621|consensus

Probab=98.12  E-value=6.1e-05  Score=67.88  Aligned_cols=146  Identities=12%  Similarity=0.146  Sum_probs=103.7

Q ss_pred             cccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc----cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCC
Q psy17243         67 HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL----GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHK  142 (392)
Q Consensus        67 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  142 (392)
                      +...|.--++...+++++.|+..|.+++|+-..++......    +.+....++++..++|+|+..|.|.++.+......
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            34455555677788999999999999999988887654433    24456778899999999999999999988763222


Q ss_pred             Ccceee---eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC----eEEEEEecCCCceeEEEEecCCCcEEEEec
Q psy17243        143 DDERFT---VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG----KLAQVLVGHTDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       143 ~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      ......   ..|...|++++|++++..+++|...|.|..-.+...    -..+.+....+.|-.+...  +..+|++..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl  188 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL  188 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhh
Confidence            222221   236789999999999999999999999998887762    1122333345666666554  444444443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=0.0017  Score=57.57  Aligned_cols=184  Identities=13%  Similarity=0.121  Sum_probs=131.0

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeC---CCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSE---DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      ++.|.+.|..+.+......--. .-..++++|+++.+..+..   ++++.+.|..+.+.+........+ ..+++.|+++
T Consensus        95 ~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~  172 (381)
T COG3391          95 SNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGN  172 (381)
T ss_pred             CCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCC
Confidence            5778888877766666554222 5678999999987776655   689999999999988886654445 8999999999


Q ss_pred             EEEEEe-CCCeEEEEEcCCceeee-e------cccceeEEEEeCCCCEEEEecCC---CcEEEEeCCCCCCCCcceeeec
Q psy17243         82 RVVTSD-KAGVIAVWVADNAQLLY-S------ALGPSKCLTVTHNMKYIVSGDGD---NSLRIWPTSPQTHKDDERFTVS  150 (392)
Q Consensus        82 ~l~~~~-~d~~i~iwd~~~~~~~~-~------~~~~~~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~  150 (392)
                      +++... .++.+.+.|........ .      .......+.+.++++.+.+....   +.+...|..+....... ....
T Consensus       173 ~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~-~~~~  251 (381)
T COG3391         173 KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD-LPVG  251 (381)
T ss_pred             eEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec-cccc
Confidence            777665 78899999987776664 1      11233578899999977776554   48888887643222111 1112


Q ss_pred             cccceEEEEEEcCCCEEEEeeC-CCcEEEEEcCCCeEEEEEec
Q psy17243        151 HSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVGGKLAQVLVG  192 (392)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~  192 (392)
                      .. ....+.+.|+++.+++... .+.+.+.|..+.+.......
T Consensus       252 ~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         252 SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence            22 4566789999999888844 48899999888777766543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.09  E-value=0.0086  Score=55.41  Aligned_cols=249  Identities=13%  Similarity=0.124  Sum_probs=140.9

Q ss_pred             CccCCeEEEEECCCccceeeecc--CCcCeeEEEecC---CCCeEEEEe------CCCeEEEEeCCCCceeEEeccccc-
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEG--HLNTVSCVAISP---NSIFAVSGS------EDNTAKVWGLTLGSVVSTFKSHQS-   69 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~---~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~-   69 (392)
                      ++.|+.|.-.|.++|+.+.....  +... ..+.-+|   ++ .++.+.      .+|.|.-+|.++|+.+-.+..-.. 
T Consensus       126 ~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~  203 (527)
T TIGR03075       126 GTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGD  203 (527)
T ss_pred             EcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCC
Confidence            45688899999999998876542  1110 0111122   34 344443      268999999999988765432110 


Q ss_pred             ------------------------------ce-EEEEEecCCCEEEEEeCC-----C-----------eEEEEEcCCcee
Q psy17243         70 ------------------------------TI-LAVAVLSDSRRVVTSDKA-----G-----------VIAVWVADNAQL  102 (392)
Q Consensus        70 ------------------------------~v-~~~~~~~~~~~l~~~~~d-----~-----------~i~iwd~~~~~~  102 (392)
                                                    .+ ..+.+.|+..+++.+..+     +           .|.-.|+++++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~  283 (527)
T TIGR03075       204 MGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI  283 (527)
T ss_pred             cccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE
Confidence                                          11 134566666666665422     2           577778999988


Q ss_pred             eeeccc------------ceeEEEEeCCCC---EEEEecCCCcEEEEeCCCCCCCCcc------ee--eec---------
Q psy17243        103 LYSALG------------PSKCLTVTHNMK---YIVSGDGDNSLRIWPTSPQTHKDDE------RF--TVS---------  150 (392)
Q Consensus       103 ~~~~~~------------~~~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~------~~--~~~---------  150 (392)
                      ...++.            +..-+.+..+++   .++.+..+|.++++|.++++.....      ..  ...         
T Consensus       284 ~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~  363 (527)
T TIGR03075       284 KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEV  363 (527)
T ss_pred             EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccC
Confidence            765442            111222334665   7888999999999999876542100      00  000         


Q ss_pred             ----------cccc-----------eEEEEEEcCCCEEEEeeCC---------------------------------CcE
Q psy17243        151 ----------HSEE-----------ITCFTVTWDSQYLITGSRD---------------------------------MSL  176 (392)
Q Consensus       151 ----------~~~~-----------v~~~~~~~~~~~l~~~~~d---------------------------------g~i  176 (392)
                                ....           -..++++|+..+++....+                                 |.|
T Consensus       364 ~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l  443 (527)
T TIGR03075       364 PEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSL  443 (527)
T ss_pred             hhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeE
Confidence                      0000           0124566655555443322                                 457


Q ss_pred             EEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccccee-EEEEcCCCeEEEE
Q psy17243        177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT-CVKLAGDGTVAMS  254 (392)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~dg~~~~~  254 (392)
                      .-+|+.+++..-............ .. ..+.+++.++.+|.++.+|.++|+.+..++......- =+.+.-+|+..+.
T Consensus       444 ~AiD~~tGk~~W~~~~~~p~~~~~-l~-t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~  520 (527)
T TIGR03075       444 IAWDPITGKIVWEHKEDFPLWGGV-LA-TAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVA  520 (527)
T ss_pred             EEEeCCCCceeeEecCCCCCCCcc-eE-ECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEE
Confidence            778888887766554222111121 11 2345777788899999999999999987764322111 1233346665443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4649|consensus

Probab=98.04  E-value=0.004  Score=49.77  Aligned_cols=133  Identities=12%  Similarity=0.036  Sum_probs=84.9

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      |+-.+.+.--|.++|++..+-. -...|-+-+.- -|++++.|...|.+++.+.++|..+..+...+.-=......+++.
T Consensus        29 gSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~g  106 (354)
T KOG4649|consen   29 GSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGG  106 (354)
T ss_pred             ecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCc
Confidence            4445566666666666554422 12222222222 356799999999999999999988877764332222344567899


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeeecccce---eEEEEeCCCCEEEEecCCCcEEEEeC
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHNMKYIVSGDGDNSLRIWPT  136 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~d~~i~~~d~  136 (392)
                      .+..++.|++.+..|..+...++..+.+-   .+-++.+-...|+++...|.+.--..
T Consensus       107 lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~  164 (354)
T KOG4649|consen  107 LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTK  164 (354)
T ss_pred             eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEcc
Confidence            99999999999999999998887755322   23344553344555555555544443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.03  E-value=0.0096  Score=53.75  Aligned_cols=221  Identities=14%  Similarity=0.179  Sum_probs=119.7

Q ss_pred             CeeEEEecCCCCeEEEE-eCC----CeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCC-----------e
Q psy17243         28 TVSCVAISPNSIFAVSG-SED----NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG-----------V   91 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~-~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~   91 (392)
                      .+....++|+++++|.+ +..    ..++++|+++++.+...-. ......+.|.++++.|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999988754 333    4599999999977654321 11223499999988877665433           3


Q ss_pred             EEEEEcCCce----eeeeccc-c--eeEEEEeCCCCEEEEecC---C-CcEEEEeCCCCC-CCCcceeeeccccceEEEE
Q psy17243         92 IAVWVADNAQ----LLYSALG-P--SKCLTVTHNMKYIVSGDG---D-NSLRIWPTSPQT-HKDDERFTVSHSEEITCFT  159 (392)
Q Consensus        92 i~iwd~~~~~----~~~~~~~-~--~~~~~~~~~~~~l~~~~~---d-~~i~~~d~~~~~-~~~~~~~~~~~~~~v~~~~  159 (392)
                      |+.|.+.+..    ++..... .  ...+..++++++++....   + ..+.+.++.... ..............+....
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            7888887663    3443332 2  346778999998876433   2 457777876431 1122222223333333332


Q ss_pred             EEcCCCEEEEee---CCCcEEEEEcCCCeE---EEEEecCCC--ceeEEEEecCCCcEEEEecCCC--eEEEEECCCCce
Q psy17243        160 VTWDSQYLITGS---RDMSLKVWQVVGGKL---AQVLVGHTD--HVSCVAVAVTNKSLVVSGSKDS--NLIVWDMETGGE  229 (392)
Q Consensus       160 ~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~  229 (392)
                      -+..+.+++...   ..+.|...++.+...   ...+..+..  .+..+...  .+.+++....++  .|+++++..+..
T Consensus       284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcE
Confidence            232343443332   246777778877652   335555655  34455443  556666666565  488899883443


Q ss_pred             eeeecc-cccceeEEEEcCCCeE
Q psy17243        230 EHFLAG-HLGCVTCVKLAGDGTV  251 (392)
Q Consensus       230 ~~~~~~-~~~~v~~~~~~~dg~~  251 (392)
                      ...+.. ..+.|..+...+++..
T Consensus       362 ~~~~~~p~~g~v~~~~~~~~~~~  384 (414)
T PF02897_consen  362 SREIPLPEAGSVSGVSGDFDSDE  384 (414)
T ss_dssp             EEEEESSSSSEEEEEES-TT-SE
T ss_pred             EeeecCCcceEEeccCCCCCCCE
Confidence            333332 2334555554444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.03  E-value=0.001  Score=59.54  Aligned_cols=171  Identities=12%  Similarity=0.066  Sum_probs=94.4

Q ss_pred             ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEE-eCCCCCCCCc
Q psy17243         66 SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIW-PTSPQTHKDD  144 (392)
Q Consensus        66 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~-d~~~~~~~~~  144 (392)
                      ...-....+.++|+++.+++ +.+|...++.....+.  ...+.....+|.+ .+.+|+-..++.|.++ ++.   ....
T Consensus        30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~--k~~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~---~~~~  102 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN--KAFGSGLSFVWSS-RNRYAVLESSSTIKIYKNFK---NEVV  102 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE--EEEEE-SEEEE-T-SSEEEEE-TTS-EEEEETTE---E-TT
T ss_pred             CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc--cccCceeEEEEec-CccEEEEECCCeEEEEEcCc---cccc
Confidence            34445788999999999888 5577777777433333  2235666788888 4457777778899996 332   1111


Q ss_pred             ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      ....  ....+..+-.   |.+|...+.+ .|.+||..+++.++.+..  .+|..+.|+ +++.+++..+. ..+.|++.
T Consensus       103 k~i~--~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~vk~V~Ws-~~g~~val~t~-~~i~il~~  172 (443)
T PF04053_consen  103 KSIK--LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAVKYVIWS-DDGELVALVTK-DSIYILKY  172 (443)
T ss_dssp             -------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE--TTSSEEEEE-S--SEEEEEE
T ss_pred             eEEc--CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--CCCcEEEEE-CCCCEEEEEeC-CeEEEEEe
Confidence            1111  1123333322   7777777644 899999999999999863  348999999 67777777764 46777765


Q ss_pred             CCC-----------ceeeeecccccceeEEEEcCCCeEEEE
Q psy17243        225 ETG-----------GEEHFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       225 ~~~-----------~~~~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                      +..           .....+..-...|.+..|..| -++.+
T Consensus       173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYt  212 (443)
T PF04053_consen  173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYT  212 (443)
T ss_dssp             -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE
T ss_pred             cchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEE
Confidence            432           022333322568999999988 44444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2444|consensus

Probab=98.01  E-value=1.1e-05  Score=62.56  Aligned_cols=143  Identities=12%  Similarity=0.122  Sum_probs=82.9

Q ss_pred             EEEEEeCCCeEEEEEcCCceeeeecccceeE-EEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEE
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLYSALGPSKC-LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTV  160 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~  160 (392)
                      .+...+.++.|.-++++..+.-......+.+ ...-.-+..+++|+.+|.|.+|+....... .-..........+.+.-
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~-~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAH-SDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchH-HHhhhcccccceecccc
Confidence            3455567777777776654432222222222 222234567999999999999987621111 11111111222222333


Q ss_pred             EcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCC-CceeEEEEecCCCcEEEEe--cCCCeEEEEECCC
Q psy17243        161 TWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT-DHVSCVAVAVTNKSLVVSG--SKDSNLIVWDMET  226 (392)
Q Consensus       161 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~  226 (392)
                      ..++.+..+++.+|.|+.|++.-.+.+.....|. .++.....+ ..+.++..+  |.|..++.|++..
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv-~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVV-GSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEe-cCCceEEeeccccchhhhhcchhh
Confidence            3356689999999999999998888777766666 444444444 445555555  5666666666653

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.01  E-value=0.0029  Score=54.41  Aligned_cols=240  Identities=9%  Similarity=0.078  Sum_probs=108.4

Q ss_pred             ECCCccceeeeccCCc-----CeeEEEecCCCCeEEEE-eCC--CeEEEEeCCCCceeEEecccccceEEEEEecCCCEE
Q psy17243         12 QMNSHELQSTMEGHLN-----TVSCVAISPNSIFAVSG-SED--NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV   83 (392)
Q Consensus        12 d~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~-~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   83 (392)
                      |..+|..+..|..+..     .-+.=+|.++|+.|+.+ ..|  ..+.+.|+++++..+--.+.........++|+.+.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            5567777777764332     22334567788655544 445  456777888887765544332333356677888888


Q ss_pred             EEEeCCCeEEEEEcCCcee--eeeccccee-EEEE--eCCCCEEEEecC----------------------CCcEEEEeC
Q psy17243         84 VTSDKAGVIAVWVADNAQL--LYSALGPSK-CLTV--THNMKYIVSGDG----------------------DNSLRIWPT  136 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~~~~~--~~~~~~~~~-~~~~--~~~~~~l~~~~~----------------------d~~i~~~d~  136 (392)
                      +.......++-.|+++.+.  ++.....-. ...+  +.++..++-.-.                      ...|.-.|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            8777778899999998765  444443322 2333  345555432211                      123444455


Q ss_pred             CCCCCCCcceeeeccccceEEEEEEcCCC-EEEEeeC---CC-cEEEEEcCC-CeEEEEEecCC--CceeEEEEecCCCc
Q psy17243        137 SPQTHKDDERFTVSHSEEITCFTVTWDSQ-YLITGSR---DM-SLKVWQVVG-GKLAQVLVGHT--DHVSCVAVAVTNKS  208 (392)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~---dg-~i~i~d~~~-~~~~~~~~~~~--~~v~~~~~~~~~~~  208 (392)
                      .+++    ..........+.-+.|+|... .|+-|-+   +. .-+||-+++ +...+.+..+.  ..+..=-|.|++..
T Consensus       176 ~tG~----~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~  251 (386)
T PF14583_consen  176 KTGE----RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST  251 (386)
T ss_dssp             TT------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-
T ss_pred             CCCc----eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE
Confidence            4322    223334556677888999644 4444433   21 124454432 33333333222  23344456744443


Q ss_pred             EEEE----ecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        209 LVVS----GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       209 ~l~~----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      +..-    ++.+..|.-+|+.+++......  ......+.-++||++++.+..
T Consensus       252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~  302 (386)
T PF14583_consen  252 IWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGG  302 (386)
T ss_dssp             EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-
T ss_pred             EEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCC
Confidence            3332    2234467778888876543222  224556677899999998753

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.01  E-value=0.00065  Score=60.46  Aligned_cols=200  Identities=13%  Similarity=0.070  Sum_probs=118.7

Q ss_pred             EEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe---CC-CeEEEEEcCCceee--eecccceeEEEEeCCCCEEE
Q psy17243         50 AKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD---KA-GVIAVWVADNAQLL--YSALGPSKCLTVTHNMKYIV  123 (392)
Q Consensus        50 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~l~  123 (392)
                      +.+=|.+ +.....+......+..-+|+|+++.++...   .. ..+.++++.+++..  ....+......|+|+|+.|+
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~  253 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLA  253 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEE
Confidence            4444433 444555554556677788999998765442   22 46899999888654  44556677889999999877


Q ss_pred             Eec-CCC--cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-CC--cEEEEEcCCCeEEEEEecCCCce
Q psy17243        124 SGD-GDN--SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DM--SLKVWQVVGGKLAQVLVGHTDHV  197 (392)
Q Consensus       124 ~~~-~d~--~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v  197 (392)
                      .+. .||  .|.++|+......   +.. ...+.-..-.|+|||++++..+. .|  .|.+++...... ..+......-
T Consensus       254 f~~~rdg~~~iy~~dl~~~~~~---~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~  328 (425)
T COG0823         254 FSSSRDGSPDIYLMDLDGKNLP---RLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN  328 (425)
T ss_pred             EEECCCCCccEEEEcCCCCcce---ecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC
Confidence            654 355  4566677644321   111 12222235569999998776654 34  466667665554 3333222222


Q ss_pred             eEEEEecCCCcEEEEecCCCe--EEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        198 SCVAVAVTNKSLVVSGSKDSN--LIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       198 ~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ..-.|+|++..+++....+|.  |.+.|+.++...+.+ ........-.|.++|+.++...
T Consensus       329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEec
Confidence            266788444444444433455  666777665543333 2344455667889999888754

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.99  E-value=0.0076  Score=51.21  Aligned_cols=202  Identities=9%  Similarity=-0.005  Sum_probs=117.7

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc-----cccceEEEEEecCC
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS-----HQSTILAVAVLSDS   80 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~   80 (392)
                      +.|.-|+..+++ ...+. +.+.+.++.....+..|+++.  .-+.+++.+++..+..+..     .....+.+...|+|
T Consensus        47 ~~i~r~~~~~g~-~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG  122 (307)
T COG3386          47 GRIHRLDPETGK-KRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG  122 (307)
T ss_pred             CeEEEecCCcCc-eEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC
Confidence            445555554332 22232 334445555544454566553  3367777766655333221     12446778888998


Q ss_pred             CEEEEEeC-----------CCeEEEEEcCCceeeeecc---cceeEEEEeCCCCEEEEecC-CCcEEEEeCCC--CCCCC
Q psy17243         81 RRVVTSDK-----------AGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDG-DNSLRIWPTSP--QTHKD  143 (392)
Q Consensus        81 ~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~--~~~~~  143 (392)
                      .+.+....           -|.++.+|. .+.......   .-.+.++|+|+++.|+.+.. .+.|.-|++..  .....
T Consensus       123 ~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~  201 (307)
T COG3386         123 RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG  201 (307)
T ss_pred             CEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC
Confidence            77665444           133444443 344333333   34578999999998888866 47888887752  11111


Q ss_pred             c--ceeeeccccceEEEEEEcCCCEEEEeeCCC-cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCc-EEEEe
Q psy17243        144 D--ERFTVSHSEEITCFTVTWDSQYLITGSRDM-SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKS-LVVSG  213 (392)
Q Consensus       144 ~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~  213 (392)
                      .  ........+..-.++...+|++-+++..+| .|.+|+.. ++.+..+.-....+++++|--++.+ +++++
T Consensus       202 ~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         202 RRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             cceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            1  111112345556677777887775555444 89999988 8888888766678888888744333 33443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.98  E-value=0.0013  Score=45.51  Aligned_cols=100  Identities=12%  Similarity=0.125  Sum_probs=67.3

Q ss_pred             eEEEEEec---C-CCEEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcce
Q psy17243         71 ILAVAVLS---D-SRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER  146 (392)
Q Consensus        71 v~~~~~~~---~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  146 (392)
                      |++|++..   + .+.|++|+.|..|++|+-+....-......+.+++-... ..|+.+..+|+|-+|+-.    ....+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~----~RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS----QRLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc----ceeee
Confidence            55666554   2 268999999999999987754444444556666666555 679999999999999762    22222


Q ss_pred             eeeccccceEEEEEEcCC----CEEEEeeCCCcEE
Q psy17243        147 FTVSHSEEITCFTVTWDS----QYLITGSRDMSLK  177 (392)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~  177 (392)
                      .  .....++++++..-.    ..|++|-.+|.|-
T Consensus        77 i--KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 I--KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             e--ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2  234446666655322    3688888888764

>KOG3617|consensus

Probab=97.97  E-value=0.0011  Score=61.50  Aligned_cols=55  Identities=15%  Similarity=0.231  Sum_probs=48.0

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT   56 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~   56 (392)
                      |-.-|.+.+|...+.+.......|+.+|..+.||++|..++++..-|.|.+|...
T Consensus        77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3456789999988877777777799999999999999999999999999999875

>KOG4640|consensus

Probab=97.95  E-value=5.8e-05  Score=67.19  Aligned_cols=91  Identities=11%  Similarity=0.020  Sum_probs=77.2

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceE-EEEEecCCCEEEEEeCCCeEEEEEcCCceee
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTIL-AVAVLSDSRRVVTSDKAGVIAVWVADNAQLL  103 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  103 (392)
                      -...|.-+.|+|.-.+||++..+|.|.+..++ .+.+-++..+...++ +++|.|||+.|++|-.||+|++.|.+++..+
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34568889999999999999999999999988 778888887777777 9999999999999999999999999999877


Q ss_pred             eec----ccceeEEEEe
Q psy17243        104 YSA----LGPSKCLTVT  116 (392)
Q Consensus       104 ~~~----~~~~~~~~~~  116 (392)
                      ...    ..++.++.|.
T Consensus        98 ~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWD  114 (665)
T ss_pred             eccccccccchheeecc
Confidence            653    3355566665

>smart00320 WD40 WD40 repeats

Probab=97.92  E-value=3e-05  Score=42.83  Aligned_cols=39  Identities=41%  Similarity=0.708  Sum_probs=34.3

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEe
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWG   54 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd   54 (392)
                      ++....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778999999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.91  E-value=0.016  Score=52.37  Aligned_cols=228  Identities=15%  Similarity=0.132  Sum_probs=119.7

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC-----------CeEEEEeCCCCcee--EEecccc
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED-----------NTAKVWGLTLGSVV--STFKSHQ   68 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----------g~v~iwd~~~~~~~--~~~~~~~   68 (392)
                      |+....|++.|+++++.+...-.. ..-..+.|.++++.|+....+           ..|+.|.+.+...-  ..+....
T Consensus       146 G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~  224 (414)
T PF02897_consen  146 GSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPD  224 (414)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TT
T ss_pred             CCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecC
Confidence            566678999999999776542111 112249999998876655433           23788888776432  3333333


Q ss_pred             cc--eEEEEEecCCCEEEEEeCC----CeEEEEEcCCc-------eeeeecccceeEEEEeCCCCEEEEec---CCCcEE
Q psy17243         69 ST--ILAVAVLSDSRRVVTSDKA----GVIAVWVADNA-------QLLYSALGPSKCLTVTHNMKYIVSGD---GDNSLR  132 (392)
Q Consensus        69 ~~--v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~  132 (392)
                      ..  ...+..++++++|+.....    ..+.+.++..+       +.+...........-+..+.+++...   .++.|.
T Consensus       225 ~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~  304 (414)
T PF02897_consen  225 EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLV  304 (414)
T ss_dssp             CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEE
T ss_pred             CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEE
Confidence            22  6788899999988765332    34777788764       22222222222222222333443332   246777


Q ss_pred             EEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee-CC--CcEEEEEcCCCeEEEEEec-CCCceeEEEEecCCCc
Q psy17243        133 IWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS-RD--MSLKVWQVVGGKLAQVLVG-HTDHVSCVAVAVTNKS  208 (392)
Q Consensus       133 ~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  208 (392)
                      ..++..............+...+.-..+...+++|+... .+  ..|+++++..+.....+.. -.+.|..+...+....
T Consensus       305 ~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~  384 (414)
T PF02897_consen  305 AVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDE  384 (414)
T ss_dssp             EEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SE
T ss_pred             EecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCE
Confidence            777765433222223334444333333334455555543 33  3688899883444444332 3344555554444455


Q ss_pred             EEEEecC---CCeEEEEECCCCcee
Q psy17243        209 LVVSGSK---DSNLIVWDMETGGEE  230 (392)
Q Consensus       209 ~l~~~~~---dg~i~iwd~~~~~~~  230 (392)
                      +.+.-+.   -+++..||+.+++..
T Consensus       385 ~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  385 LRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             EEEEEeCCCCCCEEEEEECCCCCEE
Confidence            5444432   356888888887753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.81  E-value=0.0041  Score=57.99  Aligned_cols=187  Identities=14%  Similarity=0.078  Sum_probs=103.8

Q ss_pred             cCeeEEEecCCCCeEEEEe------CCC--eEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC---------
Q psy17243         27 NTVSCVAISPNSIFAVSGS------EDN--TAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA---------   89 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~------~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------   89 (392)
                      ..+...+++|+|+.++..-      .|.  .|.+++. .+.. ..+.. ......-.|+|+|..|++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678999999999877654      243  4555554 2222 33321 2237788999998877666432         


Q ss_pred             ---CeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEE---EeCCCCCCC--CcceeeeccccceEEEEEE
Q psy17243         90 ---GVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRI---WPTSPQTHK--DDERFTVSHSEEITCFTVT  161 (392)
Q Consensus        90 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~---~d~~~~~~~--~~~~~~~~~~~~v~~~~~~  161 (392)
                         +.+.+.+++.++....+...+..+.|+|||..++... ++.|.+   -....+...  ............+..+.|.
T Consensus       427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence               3344445555444334456799999999999988866 477776   332222100  1111122233346889999


Q ss_pred             cCCCEEEEeeCCCcEEEEEcCC-CeEEEEEec--CCCceeEEEEecCCCcEEEEecCCCeEEE
Q psy17243        162 WDSQYLITGSRDMSLKVWQVVG-GKLAQVLVG--HTDHVSCVAVAVTNKSLVVSGSKDSNLIV  221 (392)
Q Consensus       162 ~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  221 (392)
                      .++.++ ++..++.-.+|.+.- +.....+..  ...++..++-+ + . -++....++.+.+
T Consensus       506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~-~-~-~iyv~~~~g~~~l  564 (591)
T PRK13616        506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAAS-P-S-TVYVTDARAVLQL  564 (591)
T ss_pred             cCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecC-C-c-eEEEEcCCceEEe
Confidence            888754 555555445555432 222122222  24556666655 2 2 3444455654433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.78  E-value=0.018  Score=48.97  Aligned_cols=214  Identities=11%  Similarity=0.044  Sum_probs=124.6

Q ss_pred             EEecCCCC-eEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeec---c
Q psy17243         32 VAISPNSI-FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA---L  107 (392)
Q Consensus        32 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~  107 (392)
                      ..|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++.....+..|+++...  +.+++.+++.....+   .
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEccc--cEEEeccCCceeEEecccc
Confidence            34666655 4555556788888988766432 222 33444555555455555554333  555555544442211   1


Q ss_pred             -----cceeEEEEeCCCCEEEEecC-----------CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee
Q psy17243        108 -----GPSKCLTVTHNMKYIVSGDG-----------DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS  171 (392)
Q Consensus       108 -----~~~~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  171 (392)
                           ...+...+.|+|.+.+....           -|.|+.++..    ....+....+-..-+.++||||++.|+...
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~----g~~~~l~~~~~~~~NGla~SpDg~tly~aD  181 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD----GGVVRLLDDDLTIPNGLAFSPDGKTLYVAD  181 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC----CCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence                 13346777888776554333           1334444431    122222223345567899999998888776


Q ss_pred             C-CCcEEEEEcCC--C----eE-EEEEecCCCceeEEEEecCCCcEEEEecCCC-eEEEEECCCCceeeeecccccceeE
Q psy17243        172 R-DMSLKVWQVVG--G----KL-AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS-NLIVWDMETGGEEHFLAGHLGCVTC  242 (392)
Q Consensus       172 ~-dg~i~i~d~~~--~----~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~  242 (392)
                      . .+.|.-|++..  +    +. ...+....+..-.++.. .++.+.+++..+| .|.+|+.. ++++..+......+++
T Consensus       182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~  259 (307)
T COG3386         182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN  259 (307)
T ss_pred             CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence            5 47888887752  1    11 12222234555567777 6677665555554 99999988 9999888877688888


Q ss_pred             EEEcC-CC-eEEEEc
Q psy17243        243 VKLAG-DG-TVAMSD  255 (392)
Q Consensus       243 ~~~~~-dg-~~~~~~  255 (392)
                      ++|-. +. .+.++.
T Consensus       260 ~~FgG~~~~~L~iTs  274 (307)
T COG3386         260 PAFGGPDLNTLYITS  274 (307)
T ss_pred             ceEeCCCcCEEEEEe
Confidence            88865 33 344443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.71  E-value=0.01  Score=51.46  Aligned_cols=171  Identities=17%  Similarity=0.238  Sum_probs=102.4

Q ss_pred             CeEEEEeCCCCceeEEeccc-ccceEEEEE---ecC----CCEEEEEeC----------CCeEEEEEcCCc-----ee--
Q psy17243         48 NTAKVWGLTLGSVVSTFKSH-QSTILAVAV---LSD----SRRVVTSDK----------AGVIAVWVADNA-----QL--  102 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~---~~~----~~~l~~~~~----------d~~i~iwd~~~~-----~~--  102 (392)
                      ..|++.|..+.+.+..+.-. ...+.+++.   ..+    ..+|++|..          .|.|.++++.+.     +.  
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35888888888877665532 233454443   222    457777643          288999999884     22  


Q ss_pred             e--eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEE
Q psy17243        103 L--YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQ  180 (392)
Q Consensus       103 ~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  180 (392)
                      +  ....+++.+++.- ++ .++++. ++.|.+|++...... ...........+.++...  ++++++|+....+.++.
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l-~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTL-LKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSE-EEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccc-hhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence            2  2345677777665 33 444443 488999999755411 111111233355555554  66999999888888885


Q ss_pred             cCC-CeEEEEEe--cCCCceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        181 VVG-GKLAQVLV--GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       181 ~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      ... .+.+..+.  .....++++.+-+.+ +.++.+..+|.+.++...
T Consensus       156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  156 YDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred             EEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence            543 33233332  234457788887333 588999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.71  E-value=0.00097  Score=63.14  Aligned_cols=134  Identities=16%  Similarity=0.217  Sum_probs=92.2

Q ss_pred             CCCeEEEEEcCCceeeeecccc--eeEEEEeCC-------CCEEEEecCCCcEEEEeCCCCCCCCc--ceeeeccccceE
Q psy17243         88 KAGVIAVWVADNAQLLYSALGP--SKCLTVTHN-------MKYIVSGDGDNSLRIWPTSPQTHKDD--ERFTVSHSEEIT  156 (392)
Q Consensus        88 ~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~-------~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~~~v~  156 (392)
                      ....|+-.|++.|+.+.+....  +....+.|+       ....+.|-.+..+..||.+-...+..  ............
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            4578999999999998765432  223344442       34567788889999999985432111  111123455677


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      |++-+.+| +|++|+.+|.|++||--..+....+++-..+|..|..+ .+|.++++.+ +..|.+++.
T Consensus       582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt-~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVT-ADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEec-CCCcEEEEee-cceEEEEEE
Confidence            88877666 89999999999999943333334466778999999999 7787777654 667777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.71  E-value=0.026  Score=48.76  Aligned_cols=247  Identities=12%  Similarity=0.035  Sum_probs=114.8

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEe--cCCCEE
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVL--SDSRRV   83 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l   83 (392)
                      ..+.+.|+++++..+.-.+-........++|+.+.++-......|+-.|+++.+....+...+..+-...|.  .++.++
T Consensus        60 ~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~  139 (386)
T PF14583_consen   60 RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKL  139 (386)
T ss_dssp             -EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEE
T ss_pred             cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEE
Confidence            456677888877554433322334456778888877666556789999999987766666555555555664  345554


Q ss_pred             EEEeC----------------------CCeEEEEEcCCceeeeecc--cceeEEEEeCCCCEEEEecCCC-----cEEEE
Q psy17243         84 VTSDK----------------------AGVIAVWVADNAQLLYSAL--GPSKCLTVTHNMKYIVSGDGDN-----SLRIW  134 (392)
Q Consensus        84 ~~~~~----------------------d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~-----~i~~~  134 (392)
                      +-.-.                      ...|...|+.+++....+.  .-...+.++|....++.-+..|     .-++|
T Consensus       140 ~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW  219 (386)
T PF14583_consen  140 VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIW  219 (386)
T ss_dssp             EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEE
T ss_pred             EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEE
Confidence            32210                      1235555777766543333  3346788888655554443322     12455


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee-----CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcE
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS-----RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSL  209 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  209 (392)
                      -++.................+.-=-|.|||..|.--+     .+..|.-+|+.+++.......  .....+..+ .++.+
T Consensus       220 ~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss-~Dg~L  296 (386)
T PF14583_consen  220 TINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSS-PDGKL  296 (386)
T ss_dssp             EEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE--TTSSE
T ss_pred             EEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEc-CCCCE
Confidence            4443222111111111223344445889988665422     244677788888765433221  233334444 56666


Q ss_pred             EEEecCCC----------------eEEEEECCCCceeeeecccc----------c-ceeEEEEcCCCeEEEEcC
Q psy17243        210 VVSGSKDS----------------NLIVWDMETGGEEHFLAGHL----------G-CVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       210 l~~~~~dg----------------~i~iwd~~~~~~~~~~~~~~----------~-~v~~~~~~~dg~~~~~~~  256 (392)
                      ++-=+.|.                -|+++++..++.. .+..|.          . .=....|+|||+.++..+
T Consensus       297 ~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~S  369 (386)
T PF14583_consen  297 FVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRS  369 (386)
T ss_dssp             EEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSSEEEEEE
T ss_pred             EEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCCEEEEEC
Confidence            65433332                4667888766543 121121          1 124678999999998864

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.66  E-value=0.021  Score=46.80  Aligned_cols=190  Identities=11%  Similarity=0.153  Sum_probs=130.9

Q ss_pred             cccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc----ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCC
Q psy17243         65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT  140 (392)
Q Consensus        65 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  140 (392)
                      .+-...+.++.|+|+.+.|++......-.++=..+|+.+.+..-    ....+.+..+++++++--.++.+.++.+..+.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            34455699999999999999999888888887788888876653    34567888888888877778888888776442


Q ss_pred             CCCcc---eee----eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe-EE--EEEecC-------CCceeEEEEe
Q psy17243        141 HKDDE---RFT----VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK-LA--QVLVGH-------TDHVSCVAVA  203 (392)
Q Consensus       141 ~~~~~---~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~--~~~~~~-------~~~v~~~~~~  203 (392)
                      .....   .+.    ...+.....++|.|....|+.+-+..-+.||...... .+  +....+       -..+.++.|.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            21111   111    1225677889999999999999888888888775332 11  111111       2346788899


Q ss_pred             cCCCcEEEEecCCCeEEEEECCCCceeeeeccc------c---cceeEEEEcCCCeEEEEc
Q psy17243        204 VTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH------L---GCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       204 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~---~~v~~~~~~~dg~~~~~~  255 (392)
                      +..+.+++-+.+++.+.-.|.. |..+..+.-+      .   ..--.++..++|.+.+..
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS  301 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS  301 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence            8889999999999999888875 4444333211      1   123467888888866654

>smart00320 WD40 WD40 repeats

Probab=97.63  E-value=0.00019  Score=39.36  Aligned_cols=38  Identities=24%  Similarity=0.528  Sum_probs=32.2

Q ss_pred             ceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         59 SVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        59 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      +++..+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566677888999999999888999999999999885

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.61  E-value=0.0057  Score=53.21  Aligned_cols=242  Identities=10%  Similarity=0.039  Sum_probs=104.6

Q ss_pred             CCCEEEEec-CCCcEEEEeCCCCCCCCcceeeec--------cccceEEEEEEcCCCEEEEeeC------CCcEEEEEcC
Q psy17243        118 NMKYIVSGD-GDNSLRIWPTSPQTHKDDERFTVS--------HSEEITCFTVTWDSQYLITGSR------DMSLKVWQVV  182 (392)
Q Consensus       118 ~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~  182 (392)
                      +.++|++.+ ..++|+++|+.+......+.....        .-.....+..-|+|++++++-.      -|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            344555555 678899999876544433332221        1122334445578888887532      3568889988


Q ss_pred             CCeEEEEEecCCC---ceeEEEEecCCCcEEEEec--------------------CCCeEEEEECCCCceeeeecccc--
Q psy17243        183 GGKLAQVLVGHTD---HVSCVAVAVTNKSLVVSGS--------------------KDSNLIVWDMETGGEEHFLAGHL--  237 (392)
Q Consensus       183 ~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~--  237 (392)
                      +.+....+.....   .-..+-|. +..+.++|..                    ...++.+||+.+.+.++++.--.  
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~q-pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQ-PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             T--EEEE--SB-TT------EEEE-TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             cccccceeccCCCCCCCCCCeEEc-CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            8777776654222   23456666 4556666643                    34579999999999988876432  


Q ss_pred             cceeEEEEc--CCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEec-cCCcceeEEEeecccccceeEEEeeccc
Q psy17243        238 GCVTCVKLA--GDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRK-YGHLTSSIMMAAVDERLKRRFSVSASME  314 (392)
Q Consensus       238 ~~v~~~~~~--~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~s~d  314 (392)
                      .....+.|.  |+..+-..+.                  ..+-..+.|.+. .+.... ..+..+....     +.+..-
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~------------------aLss~i~~~~k~~~g~W~a-~kVi~ip~~~-----v~~~~l  300 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGC------------------ALSSSIWRFYKDDDGEWAA-EKVIDIPAKK-----VEGWIL  300 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEE------------------E--EEEEEEEE-ETTEEEE-EEEEEE--EE-------SS--
T ss_pred             CceEEEEecCCCCccceEEEE------------------eccceEEEEEEcCCCCeee-eEEEECCCcc-----cCcccc
Confidence            234455553  4444433332                  011123333331 111111 1111111100     000000


Q ss_pred             cceecce---eccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCcccccccccc------------ccC----ccccc
Q psy17243        315 EISKIPI---KDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSK------------QNS----YSSRQ  375 (392)
Q Consensus       315 ~~~~~~~---~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~------------~~~----~~~~~  375 (392)
                      -.+..+.   ......+..|.|.++|.++.-.+|.||.||+.++..|+...+..-.            ..+    .+-++
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq  380 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ  380 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence            0000000   0112233689999999989889999999999999987654221100            001    23388


Q ss_pred             cccCccCCC
Q psy17243        376 HSVDTDELS  384 (392)
Q Consensus       376 fspdg~~l~  384 (392)
                      .|-||+.|.
T Consensus       381 lS~DGkRlY  389 (461)
T PF05694_consen  381 LSLDGKRLY  389 (461)
T ss_dssp             E-TTSSEEE
T ss_pred             EccCCeEEE
Confidence            999999775

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.59  E-value=0.0057  Score=54.00  Aligned_cols=167  Identities=11%  Similarity=0.099  Sum_probs=94.6

Q ss_pred             eccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec--c------cccceEEEEEec-----CC---CEEEE
Q psy17243         22 MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK--S------HQSTILAVAVLS-----DS---RRVVT   85 (392)
Q Consensus        22 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~l~~   85 (392)
                      ++...++|++++.|.-| ++|.|..+|.+.|.|++....+..-.  .      ....++++.|.-     |+   -.+++
T Consensus        82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            34457899999998544 89999999999999998887776532  1      234578888862     22   47899


Q ss_pred             EeCCCeEEEEEcCC---ceee----e---ecccceeEEE-EeCC--------------------CCEEEEecCCCcEEEE
Q psy17243         86 SDKAGVIAVWVADN---AQLL----Y---SALGPSKCLT-VTHN--------------------MKYIVSGDGDNSLRIW  134 (392)
Q Consensus        86 ~~~d~~i~iwd~~~---~~~~----~---~~~~~~~~~~-~~~~--------------------~~~l~~~~~d~~i~~~  134 (392)
                      |...|.+.+|.+.-   +...    .   ....++..+. ++.+                    -+-+++...+..++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            99999999997751   1111    0   1122222222 2111                    1235555667889999


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEE-----cCCCEEEEeeCCCcEEEEEcCCCeEEEEEec
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVT-----WDSQYLITGSRDMSLKVWQVVGGKLAQVLVG  192 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  192 (392)
                      .....+.  ..+.. ........+.+-     ..+..|++-..+|.+++|.+...+.+..+.-
T Consensus       241 ~~~~~k~--~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  241 KPPKSKG--AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             -TT---E--EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             eCCCCcc--cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence            8763322  11111 222223334442     2466788888999999999999888877654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PHA02713 hypothetical protein; Provisional

Probab=97.57  E-value=0.015  Score=54.33  Aligned_cols=187  Identities=7%  Similarity=0.051  Sum_probs=97.8

Q ss_pred             CCCeEEEEeCC------CeEEEEeCCCCceeE--EecccccceEEEEEecCCCEEEEEeCCC-----eEEEEEcCCceee
Q psy17243         37 NSIFAVSGSED------NTAKVWGLTLGSVVS--TFKSHQSTILAVAVLSDSRRVVTSDKAG-----VIAVWVADNAQLL  103 (392)
Q Consensus        37 ~~~~l~~~~~d------g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~  103 (392)
                      ++...+.|+.+      ..+..||..+..-..  .+...... .+++ .-+++..+.|+.++     .+..||..+.+-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            56666777753      347788887764322  11111111 1222 23567777777654     4788998876433


Q ss_pred             e--eccccee-EEEEeCCCCEEEEecCC-----------------------CcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243        104 Y--SALGPSK-CLTVTHNMKYIVSGDGD-----------------------NSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus       104 ~--~~~~~~~-~~~~~~~~~~l~~~~~d-----------------------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      .  ....+.. .....-++...+.|+.+                       ..+..||..+............. .. .+
T Consensus       381 ~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~-~~  458 (557)
T PHA02713        381 MLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-IR-PG  458 (557)
T ss_pred             ECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-cc-Cc
Confidence            2  2222111 11223367777777654                       24777888765443222221111 11 12


Q ss_pred             EEEEcCCCEEEEeeCC------CcEEEEEcCC-CeE--EEEEecCCCceeEEEEecCCCcEEEEecCCC--eEEEEECCC
Q psy17243        158 FTVTWDSQYLITGSRD------MSLKVWQVVG-GKL--AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS--NLIVWDMET  226 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~  226 (392)
                      ++ .-+++..+.|+.+      ..+..||..+ .+-  +..+........ ++.  -++.+.+.|+.++  .+..||..+
T Consensus       459 ~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~-~~~--~~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        459 VV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH-TIL--HDNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             EE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce-eEE--ECCEEEEEeeecceeehhhcCccc
Confidence            22 2256666667643      2467899887 432  233332222222 222  2578888898888  677888777


Q ss_pred             Cceee
Q psy17243        227 GGEEH  231 (392)
Q Consensus       227 ~~~~~  231 (392)
                      .+-..
T Consensus       535 ~~W~~  539 (557)
T PHA02713        535 YEWNH  539 (557)
T ss_pred             ccccc
Confidence            65443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.49  E-value=0.041  Score=45.22  Aligned_cols=167  Identities=12%  Similarity=0.126  Sum_probs=112.3

Q ss_pred             ccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccc-ccceEEEEEecCCCEEEEEeCCCeEEEEEcCCce
Q psy17243         23 EGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH-QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        23 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  101 (392)
                      .+-...|.++.|+|+.+.|++......-.|+=..+|+.+.++.-. -.....+.+..++++.++--.++.+.++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            444556999999999998888888887778877889998887631 2334567788788887777778888888766542


Q ss_pred             eeeec-------------ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecc-------ccceEEEEEE
Q psy17243        102 LLYSA-------------LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH-------SEEITCFTVT  161 (392)
Q Consensus       102 ~~~~~-------------~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-------~~~v~~~~~~  161 (392)
                      .+...             +..-..++|.|..+.|+++-+..-+.+|................+       -..+.++.|.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            22111             123457999999999999999888888877633222111111111       2346677787


Q ss_pred             cC-CCEEEEeeCCCcEEEEEcCCCeEEEEE
Q psy17243        162 WD-SQYLITGSRDMSLKVWQVVGGKLAQVL  190 (392)
Q Consensus       162 ~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~  190 (392)
                      +. +.+|+.+.+++.+.-.|.. +.++..+
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l  270 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLS-GEVIELL  270 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence            65 5566777777878777754 4444433

>KOG4640|consensus

Probab=97.48  E-value=0.0009  Score=59.93  Aligned_cols=94  Identities=13%  Similarity=0.068  Sum_probs=78.8

Q ss_pred             ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCcee-EEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVS-CVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      ...+.-+.|+|.-.++|.+..+|.|.+..+. .+.+..+.-+...++ +++|. ++|++|+.|-.||+|++.|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeec-CCCCEEEEEecCCeEEEEEccCCCce
Confidence            4567788999999999999999999999987 777888876777777 99999 67999999999999999999999887


Q ss_pred             eeec-ccccceeEEEEcC
Q psy17243        231 HFLA-GHLGCVTCVKLAG  247 (392)
Q Consensus       231 ~~~~-~~~~~v~~~~~~~  247 (392)
                      .... .....|.++-|.+
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            7632 2455788888863

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.39  E-value=0.061  Score=50.41  Aligned_cols=199  Identities=15%  Similarity=0.056  Sum_probs=105.6

Q ss_pred             CCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe------CCC--eEEEEEcCCceeeeecccceeEEEEeCC
Q psy17243         47 DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD------KAG--VIAVWVADNAQLLYSALGPSKCLTVTHN  118 (392)
Q Consensus        47 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~  118 (392)
                      +|.+.-.+-.....+.-..+....+.+.+++|+|+.++...      .|.  .|.+++................-.|+|+
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspD  407 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLD  407 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCC
Confidence            56555443222222222222334678899999999887665      243  4555554332222122224667889999


Q ss_pred             CCEEEEecCC------------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEE---EEcCC
Q psy17243        119 MKYIVSGDGD------------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV---WQVVG  183 (392)
Q Consensus       119 ~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---~d~~~  183 (392)
                      +..+++....            +.+.+.++..+....      .....|..+.|+|||..++... ++.|++   -....
T Consensus       408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~  480 (591)
T PRK13616        408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED  480 (591)
T ss_pred             CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence            8877776533            222222332111100      2345799999999999888766 567777   34334


Q ss_pred             Ce-EE---EEEe-cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC-Cceeeeecc--cccceeEEEEcCCCeEEEEc
Q psy17243        184 GK-LA---QVLV-GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET-GGEEHFLAG--HLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       184 ~~-~~---~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~~~dg~~~~~~  255 (392)
                      +. .+   ..+. .-...+..+.|. .++.++ .+..++.-.+|.+.- |.....+..  ...++..++-+++ .+++.+
T Consensus       481 G~~~l~~~~~l~~~l~~~~~~l~W~-~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~  557 (591)
T PRK13616        481 GQYALTNPREVGPGLGDTAVSLDWR-TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVTD  557 (591)
T ss_pred             CceeecccEEeecccCCccccceEe-cCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEEc
Confidence            43 11   1122 223346788999 555554 444444444454332 222222232  2456777777763 455544

>KOG4499|consensus

Probab=97.39  E-value=0.044  Score=43.39  Aligned_cols=145  Identities=12%  Similarity=0.121  Sum_probs=88.0

Q ss_pred             ccceEEEEEecCCCEEEEEeC---------CCeEEEEEcCCc-eeeeecccceeEEEEeCCCCEEEEe-cCCCcEEEEe-
Q psy17243         68 QSTILAVAVLSDSRRVVTSDK---------AGVIAVWVADNA-QLLYSALGPSKCLTVTHNMKYIVSG-DGDNSLRIWP-  135 (392)
Q Consensus        68 ~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d-  135 (392)
                      +.+.+.-..+|+|+++.-.-.         .|.++.|-.... +.+.....-.+.++|+.+.+.++.- +.+-.|.-|| 
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            345666677899988432211         244555544332 2223333445678888877766554 4456676677 


Q ss_pred             -CCCCCCCCcceeee-c-----cccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCc
Q psy17243        136 -TSPQTHKDDERFTV-S-----HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKS  208 (392)
Q Consensus       136 -~~~~~~~~~~~~~~-~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  208 (392)
                       ..++.......... .     .....-.+++..+|++.++.-..++|...|..+++.+..+.-....|++++|--++-.
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d  267 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLD  267 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence             33332222111110 0     1111223455667888888888999999999999999999888899999999744434


Q ss_pred             EEEE
Q psy17243        209 LVVS  212 (392)
Q Consensus       209 ~l~~  212 (392)
                      ++++
T Consensus       268 ~~yv  271 (310)
T KOG4499|consen  268 ILYV  271 (310)
T ss_pred             EEEE
Confidence            4443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.29  E-value=0.13  Score=46.61  Aligned_cols=182  Identities=12%  Similarity=0.095  Sum_probs=101.3

Q ss_pred             ccceEEEEEecCCCEEEEEe---CCCeEEEEEcCCceeeeecccceeEEEEeCC----CCEEEEecCCCcEEEEeCCCCC
Q psy17243         68 QSTILAVAVLSDSRRVVTSD---KAGVIAVWVADNAQLLYSALGPSKCLTVTHN----MKYIVSGDGDNSLRIWPTSPQT  140 (392)
Q Consensus        68 ~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~d~~i~~~d~~~~~  140 (392)
                      -.++..++|. ||+.++...   .+|.+++=|   .+ +.....++..+.|.|-    ...+++.-....|.+|.+....
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~-viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SK-VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCC---cc-EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            3578899997 565544322   122222111   11 2223357888999884    3456666777899999886322


Q ss_pred             CCC--cceee---ecccc--ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe-EEEEEecCCCceeEEEEecCCCcEEEE
Q psy17243        141 HKD--DERFT---VSHSE--EITCFTVTWDSQYLITGSRDMSLKVWQVVGGK-LAQVLVGHTDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       141 ~~~--~~~~~---~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~  212 (392)
                      ...  .....   ....-  -...+.|+|....|++-.....-.+++++... .++.-....+.|.|.+|.+++.+++++
T Consensus        94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVA  173 (671)
T PF15390_consen   94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVA  173 (671)
T ss_pred             cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEE
Confidence            111  11111   01111  12356799998888877665555566665432 232222456889999999666666666


Q ss_pred             ecCCCeEEEEECCCCcee----eeecccccceeEEEEcCCCeEEEE
Q psy17243        213 GSKDSNLIVWDMETGGEE----HFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       213 ~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                      .+..=.-+|||-......    ..+..-.+.|.++.-.-|.++.+.
T Consensus       174 vGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsqVAva  219 (671)
T PF15390_consen  174 VGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQVAVA  219 (671)
T ss_pred             eCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccceEEEE
Confidence            666666789986543211    111123346677666666555444

>KOG2395|consensus

Probab=97.29  E-value=0.0052  Score=54.18  Aligned_cols=140  Identities=16%  Similarity=0.228  Sum_probs=96.0

Q ss_pred             CCCeEE-EEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC-------EEEEEeCCCeEEEEEcCCcee--eeec
Q psy17243         37 NSIFAV-SGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR-------RVVTSDKAGVIAVWVADNAQL--LYSA  106 (392)
Q Consensus        37 ~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~--~~~~  106 (392)
                      +.++|+ ++..-..++-.|++.|+.+.+.+.+.. |+-+.+.|+.+       .-+.|-.+..|.-||++-...  +...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            334443 455556788889999999999997666 77788888653       235667788899999873221  1111


Q ss_pred             c-------cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEE
Q psy17243        107 L-------GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVW  179 (392)
Q Consensus       107 ~-------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  179 (392)
                      .       ..-.|.+-..+ .++++|+.+|.|++||--   .........+...+|..+..+.+|+++++.+ +..+.+.
T Consensus       423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri---~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi  497 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRI---GRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLI  497 (644)
T ss_pred             eccccccccccceeeecCC-ceEEEeecCCcEEeehhh---hhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence            1       12234444444 489999999999999873   2233334456788999999999999988776 5577777


Q ss_pred             EcC
Q psy17243        180 QVV  182 (392)
Q Consensus       180 d~~  182 (392)
                      ++.
T Consensus       498 ~t~  500 (644)
T KOG2395|consen  498 DTL  500 (644)
T ss_pred             EEe
Confidence            763

>KOG2079|consensus

Probab=97.28  E-value=0.0016  Score=62.15  Aligned_cols=108  Identities=16%  Similarity=0.256  Sum_probs=79.2

Q ss_pred             EEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec
Q psy17243        113 LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG  192 (392)
Q Consensus       113 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  192 (392)
                      +...-.+..++.|+..|.+...|....  ............+|++++|+.+|..++.|-.+|.|.+||+..++.++.+..
T Consensus        93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   93 ISSAIVVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             eeeeeeeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            333334557888999999998888642  111223334578999999999999999999999999999999999999887


Q ss_pred             CCCceeEEEEec--CCCcEEEEecCCCeEEEEEC
Q psy17243        193 HTDHVSCVAVAV--TNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       193 ~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~  224 (392)
                      |..+.+.+-+.-  .++..++++...|.  +|.+
T Consensus       171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            777666554321  34556888877776  4543

>KOG2444|consensus

Probab=97.26  E-value=0.00082  Score=52.57  Aligned_cols=136  Identities=15%  Similarity=0.140  Sum_probs=72.2

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEE-ecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee----eecccceeE-EE
Q psy17243         41 AVSGSEDNTAKVWGLTLGSVVST-FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL----YSALGPSKC-LT  114 (392)
Q Consensus        41 l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~-~~  114 (392)
                      +...+.||.|.-+++...+.... -..+...   .....-+..+++|+.+|.|++|+.......    ......+.+ +.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            44456778888777654332111 1112211   111223568999999999999988732211    112223333 22


Q ss_pred             EeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc-cceEEEEEEcCCCEEEEe--eCCCcEEEEEcC
Q psy17243        115 VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS-EEITCFTVTWDSQYLITG--SRDMSLKVWQVV  182 (392)
Q Consensus       115 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~  182 (392)
                      ...++.+..++..+|.|+.|++....   .......|. .++..+..+..++.+...  +.|..++.|++.
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k---~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNK---VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCc---eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            33456688999999999999986332   222333343 333333333344444444  445555555543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.26  E-value=0.058  Score=44.09  Aligned_cols=203  Identities=15%  Similarity=0.188  Sum_probs=112.5

Q ss_pred             EEEEECCCccceeeeccCCcC--eeEEEecCCCCeEEEEeCC-----CeEEEEeCCCC-ceeEEecccccceEEEEEecC
Q psy17243          8 VNVWQMNSHELQSTMEGHLNT--VSCVAISPNSIFAVSGSED-----NTAKVWGLTLG-SVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         8 i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      ..++|.+..+...++...++.  --.=.|||||.+|+..-.|     |.|-|||...+ +.+.++..|.-.-..+.+.+|
T Consensus        93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D  172 (366)
T COG3490          93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD  172 (366)
T ss_pred             EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC
Confidence            457777776665554332211  1123689999998876444     78999998754 567778888877888999999


Q ss_pred             CCEEEEEeCCCeEEEE-EcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee-eccccceEE
Q psy17243         80 SRRVVTSDKAGVIAVW-VADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT-VSHSEEITC  157 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~v~~  157 (392)
                      |+.++.+.  |-|... |....++..                    -+..-.+.+.|..++...++.... ..+...+..
T Consensus       173 Grtlvvan--GGIethpdfgR~~lNl--------------------dsMePSlvlld~atG~liekh~Lp~~l~~lSiRH  230 (366)
T COG3490         173 GRTLVVAN--GGIETHPDFGRTELNL--------------------DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH  230 (366)
T ss_pred             CcEEEEeC--CceecccccCccccch--------------------hhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence            99888763  334333 211111100                    011122223332222222222111 123456777


Q ss_pred             EEEEcCCCEEEEeeCCCc-----EEEEEcCCCeEEEEEe-------cCCCceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        158 FTVTWDSQYLITGSRDMS-----LKVWQVVGGKLAQVLV-------GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      ++..+|+..++.+-..|.     -.+=-...++++.-+.       .....|-+++.+..++-..+++-..+...+||..
T Consensus       231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~  310 (366)
T COG3490         231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA  310 (366)
T ss_pred             eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence            777777765554433221     0011112233333222       1234567788874555556666667788999999


Q ss_pred             CCceeee
Q psy17243        226 TGGEEHF  232 (392)
Q Consensus       226 ~~~~~~~  232 (392)
                      +|..+..
T Consensus       311 tG~vv~~  317 (366)
T COG3490         311 TGAVVSE  317 (366)
T ss_pred             CCcEEec
Confidence            9987754

>KOG4499|consensus

Probab=97.19  E-value=0.078  Score=42.05  Aligned_cols=202  Identities=12%  Similarity=0.076  Sum_probs=110.3

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC--CEE-EEEeCCCeEEEEEcCC--ceeeeecc------
Q psy17243         39 IFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS--RRV-VTSDKAGVIAVWVADN--AQLLYSAL------  107 (392)
Q Consensus        39 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l-~~~~~d~~i~iwd~~~--~~~~~~~~------  107 (392)
                      .++.+--..|.|.-||+.+.+..+.-- ...+..++.+--.+  +.+ +.++..-.|.-||...  .....+..      
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~i-e~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~  106 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKI-EGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR  106 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEE-ecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence            344554456777778887754433221 11223333332222  122 3333333445566332  22222211      


Q ss_pred             --cceeEEEEeCCCCEEEEecC----------CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEE-eeCCC
Q psy17243        108 --GPSKCLTVTHNMKYIVSGDG----------DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLIT-GSRDM  174 (392)
Q Consensus       108 --~~~~~~~~~~~~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg  174 (392)
                        ...+.-..+|+|++ +.|..          .|.++.|-..     .........-.--+.++|+.+.+.++. -+.+-
T Consensus       107 kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~-----h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~  180 (310)
T KOG4499|consen  107 KKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAG-----HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNY  180 (310)
T ss_pred             HhcccccCccCCCCce-eeeeeccccccccccccEEEEeccC-----CCceeeehhccCCccccccccCcEEEEEccCce
Confidence              23345667889988 33332          2455555432     111111122233456788877665554 44566


Q ss_pred             cEEEEE--cCCCe-----EEEEEec---CC-CceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEE
Q psy17243        175 SLKVWQ--VVGGK-----LAQVLVG---HT-DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCV  243 (392)
Q Consensus       175 ~i~i~d--~~~~~-----~~~~~~~---~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  243 (392)
                      .|.-||  ..++.     .+..++.   .. ...-.+++. ..+.+.++.-..++|...|..+|+.+.+++-....|+++
T Consensus       181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc  259 (310)
T KOG4499|consen  181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC  259 (310)
T ss_pred             EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence            676677  55543     2333322   11 112344555 568888888889999999999999999998888999999


Q ss_pred             EEcCC
Q psy17243        244 KLAGD  248 (392)
Q Consensus       244 ~~~~d  248 (392)
                      +|-.-
T Consensus       260 cFgGk  264 (310)
T KOG4499|consen  260 CFGGK  264 (310)
T ss_pred             EecCC
Confidence            99754

>KOG4441|consensus

Probab=97.17  E-value=0.092  Score=49.19  Aligned_cols=214  Identities=16%  Similarity=0.160  Sum_probs=116.0

Q ss_pred             CeEEEEECCCccce--eeeccCCcCeeEEEecCCCCeEEEEeCC------CeEEEEeCCCCceeEEecccccce-EEEEE
Q psy17243          6 CLVNVWQMNSHELQ--STMEGHLNTVSCVAISPNSIFAVSGSED------NTAKVWGLTLGSVVSTFKSHQSTI-LAVAV   76 (392)
Q Consensus         6 g~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~v-~~~~~   76 (392)
                      ..+..+|..+++..  ..+. +...-.+++.. ++...++|+.|      .++..||..+.+-...-.-..... .+++.
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~  378 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV  378 (571)
T ss_pred             ceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence            46778887765322  2232 22333444444 44677888888      357788887776443211111111 11222


Q ss_pred             ecCCCEEEEEeCCC-----eEEEEEcCCceeeee--ccccee-EEEEeCCCCEEEEecCC------CcEEEEeCCCCCCC
Q psy17243         77 LSDSRRVVTSDKAG-----VIAVWVADNAQLLYS--ALGPSK-CLTVTHNMKYIVSGDGD------NSLRIWPTSPQTHK  142 (392)
Q Consensus        77 ~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~--~~~~~~-~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~  142 (392)
                       -+|...++|+.||     .+..||..+.+--..  ...... .-...-++...++|+.+      ..+..||..++...
T Consensus       379 -l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  379 -LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             -ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence             2677888888886     477788776654222  222222 23334477777777754      35788998876554


Q ss_pred             CcceeeeccccceEEEEEEcCCCEEEEeeCCCc-----EEEEEcCCCeEEEE--EecCCCceeEEEEecCCCcEEEEecC
Q psy17243        143 DDERFTVSHSEEITCFTVTWDSQYLITGSRDMS-----LKVWQVVGGKLAQV--LVGHTDHVSCVAVAVTNKSLVVSGSK  215 (392)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~  215 (392)
                      .........  .-..++. -++.+.+.|+.|+.     +..||..+.+-...  +......+....   -++.+.+.|+.
T Consensus       458 ~~~~M~~~R--~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~---~~~~ly~vGG~  531 (571)
T KOG4441|consen  458 LIAPMNTRR--SGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV---LGGKLYAVGGF  531 (571)
T ss_pred             ecCCccccc--ccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE---ECCEEEEEecc
Confidence            433332111  1111222 25777778887763     77788877654433  221222222222   35777778887


Q ss_pred             CCe-----EEEEECCCCc
Q psy17243        216 DSN-----LIVWDMETGG  228 (392)
Q Consensus       216 dg~-----i~iwd~~~~~  228 (392)
                      ||.     |..||..+.+
T Consensus       532 ~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  532 DGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cCccccceeEEcCCCCCc
Confidence            764     6666665543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.12  E-value=0.13  Score=43.45  Aligned_cols=147  Identities=13%  Similarity=0.195  Sum_probs=90.0

Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCceeeee--cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcce---------
Q psy17243         78 SDSRRVVTSDKAGVIAVWVADNAQLLYS--ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER---------  146 (392)
Q Consensus        78 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---------  146 (392)
                      ..++.|+.|+++| +.+++.........  ...++..+...++-+.+++-+ |+.+.++++..........         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            3577899999998 89999833322222  222488888888877777665 4999999987543333110         


Q ss_pred             --eeeccccceEEEE--EEcCCCEEEEeeCCCcEEEEEcCCC-----eEEEEEecCCCceeEEEEecCCCcEEEEecCCC
Q psy17243        147 --FTVSHSEEITCFT--VTWDSQYLITGSRDMSLKVWQVVGG-----KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       147 --~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                        ........+..++  -...+...++......|.+|.....     +..+.+. -...+..++|.   ++.++.|. ..
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~---~~~i~v~~-~~  157 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL---GNKICVGT-SK  157 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe---CCEEEEEe-CC
Confidence              0112333445444  1123333344444558999888653     3445554 45788899998   44555554 44


Q ss_pred             eEEEEECCCCceee
Q psy17243        218 NLIVWDMETGGEEH  231 (392)
Q Consensus       218 ~i~iwd~~~~~~~~  231 (392)
                      ...+.|+.++....
T Consensus       158 ~f~~idl~~~~~~~  171 (275)
T PF00780_consen  158 GFYLIDLNTGSPSE  171 (275)
T ss_pred             ceEEEecCCCCceE
Confidence            58899998766543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.12  E-value=0.0022  Score=37.03  Aligned_cols=35  Identities=26%  Similarity=0.317  Sum_probs=30.2

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV   60 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   60 (392)
                      -...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3457999999999999999999999999998 4443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.12  E-value=0.17  Score=44.53  Aligned_cols=181  Identities=10%  Similarity=0.087  Sum_probs=86.8

Q ss_pred             cCCeEEEEECCC----ccceeeecc---CC----cCeeEEEecCCCCeEEEE--eC----CCeEEEEeCCCCceeEEecc
Q psy17243          4 MDCLVNVWQMNS----HELQSTMEG---HL----NTVSCVAISPNSIFAVSG--SE----DNTAKVWGLTLGSVVSTFKS   66 (392)
Q Consensus         4 ~dg~i~vwd~~~----~~~~~~~~~---h~----~~v~~~~~~~~~~~l~~~--~~----dg~v~iwd~~~~~~~~~~~~   66 (392)
                      ..+.|+|.|+.+    .++.+.++.   +.    ..-..+..-|+|+.++++  ..    -|-+.+.|-++.+.......
T Consensus        96 ~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~  175 (461)
T PF05694_consen   96 RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEK  175 (461)
T ss_dssp             TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--S
T ss_pred             ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceecc
Confidence            467899999873    444555542   11    112233445788888775  22    25688899888888777664


Q ss_pred             cc---cceEEEEEecCCCEEEEEeC--------------------CCeEEEEEcCCceeeeecccc-----eeEEEEe--
Q psy17243         67 HQ---STILAVAVLSDSRRVVTSDK--------------------AGVIAVWVADNAQLLYSALGP-----SKCLTVT--  116 (392)
Q Consensus        67 ~~---~~v~~~~~~~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~--  116 (392)
                      ..   ..-..+-|.|..+.+++...                    ...+.+||+.+.+.++.+.-.     ...+.|.  
T Consensus       176 ~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~  255 (461)
T PF05694_consen  176 DRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHD  255 (461)
T ss_dssp             B-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SS
T ss_pred             CCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCC
Confidence            32   23466778888888887642                    357999999999998876543     2234443  


Q ss_pred             CCCCEEEEec-CCCcEEEEeC-CCCCCCCcceeee------------------ccccceEEEEEEcCCCEEEEeeC-CCc
Q psy17243        117 HNMKYIVSGD-GDNSLRIWPT-SPQTHKDDERFTV------------------SHSEEITCFTVTWDSQYLITGSR-DMS  175 (392)
Q Consensus       117 ~~~~~l~~~~-~d~~i~~~d~-~~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~~~~~-dg~  175 (392)
                      |+..+-++++ ....|..|-- ..+..........                  .-..-|+.|.+|.|.++|+.++. +|.
T Consensus       256 P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd  335 (461)
T PF05694_consen  256 PDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGD  335 (461)
T ss_dssp             TT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTE
T ss_pred             CCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCc
Confidence            4444433333 3444544432 2221111111110                  11345799999999999988775 899


Q ss_pred             EEEEEcCCC
Q psy17243        176 LKVWQVVGG  184 (392)
Q Consensus       176 i~i~d~~~~  184 (392)
                      |+.||+...
T Consensus       336 vrqYDISDP  344 (461)
T PF05694_consen  336 VRQYDISDP  344 (461)
T ss_dssp             EEEEE-SST
T ss_pred             EEEEecCCC
Confidence            999999764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.09  E-value=0.19  Score=44.64  Aligned_cols=84  Identities=15%  Similarity=0.158  Sum_probs=58.6

Q ss_pred             ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCce-eEEEEecCC-----------------CcEEEEe
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHV-SCVAVAVTN-----------------KSLVVSG  213 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~-----------------~~~l~~~  213 (392)
                      ...+.+++.+|++++.++...-|.|.++|+.++..++.+++-.+.= .-+......                 --+++-+
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            4557889999999999998888999999999998888777644321 111111010                 1133445


Q ss_pred             cCCCeEEEEECCCCceeeeecc
Q psy17243        214 SKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       214 ~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      -.-|.|.||.+++|..+..+..
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEEe
Confidence            5688999999999988876653

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.083  Score=41.12  Aligned_cols=176  Identities=14%  Similarity=0.109  Sum_probs=103.5

Q ss_pred             CCCeEEEEeCC--CeEEEEeCCCCceeEEecccccceEEEEEecCCCEE-EEEeCCCeEEEEEcCCceeeeecccceeEE
Q psy17243         37 NSIFAVSGSED--NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV-VTSDKAGVIAVWVADNAQLLYSALGPSKCL  113 (392)
Q Consensus        37 ~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  113 (392)
                      ++.++.+.+.-  ..|++||+.+++.+...+-....+..=-...-+.++ ...-.+|.-..+|..+.+.+..+.-+-..-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            34566665543  469999999998876654322222221111122222 233457788889999888877665444444


Q ss_pred             EEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce---EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEE
Q psy17243        114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI---TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL  190 (392)
Q Consensus       114 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  190 (392)
                      ....++..|+.++....++.-|.++-.......... ...+|   +-+.|- +|...+-.-.+..|...|..+|+.+..+
T Consensus       135 gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~-~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi  212 (262)
T COG3823         135 GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTD-DGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI  212 (262)
T ss_pred             eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEE-CCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence            444566667777777777777766443333333221 12222   333343 5555555555666777777777766544


Q ss_pred             e------------cCCCceeEEEEecCCCcEEEEec
Q psy17243        191 V------------GHTDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       191 ~------------~~~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      .            .|....+.+++.|..++++++|-
T Consensus       213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             EccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            2            24456788999977778888773

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.92  E-value=0.44  Score=46.20  Aligned_cols=196  Identities=14%  Similarity=0.060  Sum_probs=115.2

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEecccccc--------eEEEEEec----------------CCCEEEEEeCCCeEE
Q psy17243         38 SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQST--------ILAVAVLS----------------DSRRVVTSDKAGVIA   93 (392)
Q Consensus        38 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~d~~i~   93 (392)
                      +..|+.++.++.|.-.|..+|+.+-++......        ...+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456778888899999999999988776532211        12233321                234788899999999


Q ss_pred             EEEcCCceeeeeccc--cee-------------EEEEeC--CCCEEEEecC----------CCcEEEEeCCCCCCCCcce
Q psy17243         94 VWVADNAQLLYSALG--PSK-------------CLTVTH--NMKYIVSGDG----------DNSLRIWPTSPQTHKDDER  146 (392)
Q Consensus        94 iwd~~~~~~~~~~~~--~~~-------------~~~~~~--~~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~  146 (392)
                      -.|.++++.+..+..  .+.             .+.-.|  .+..+++|+.          +|.|+-+|.++++..-...
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            999999988865422  110             011112  2345666642          5789999987665321111


Q ss_pred             ee--------------eccccce-EEEEEEcCCCEEEEee------------------CCCcEEEEEcCCCeEEEEEec-
Q psy17243        147 FT--------------VSHSEEI-TCFTVTWDSQYLITGS------------------RDMSLKVWQVVGGKLAQVLVG-  192 (392)
Q Consensus       147 ~~--------------~~~~~~v-~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~-  192 (392)
                      ..              ......+ ..+++.+...+++.+.                  ..+.|.-.|.++++..-.++. 
T Consensus       354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~  433 (764)
T TIGR03074       354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV  433 (764)
T ss_pred             cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence            00              0000111 2344555444444422                  134577778888887766653 


Q ss_pred             CC--------CceeEEEEecCCC---cEEEEecCCCeEEEEECCCCceeeee
Q psy17243        193 HT--------DHVSCVAVAVTNK---SLVVSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       193 ~~--------~~v~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                      |.        ....-+.+...++   ..++.++.+|.+.+.|.++|+.+...
T Consensus       434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            21        1111122221134   37899999999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.86  E-value=0.39  Score=44.69  Aligned_cols=191  Identities=8%  Similarity=0.057  Sum_probs=113.4

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEecccc-cceE----------EEEEecCCCEEEEEeCCCeEEEEEcCCceeeeec
Q psy17243         38 SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQ-STIL----------AVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA  106 (392)
Q Consensus        38 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  106 (392)
                      +..|+.++.++.|.-.|..+|+.+-++.... ..+.          .+++  .+..++.++.++.+.-.|.++++.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4467777788899999999999887665311 1111          1222  2346788889999999999999988665


Q ss_pred             ccce----eEEEEeC--CCCEEEEecC------CCcEEEEeCCCCCCCCcceeeec------------------------
Q psy17243        107 LGPS----KCLTVTH--NMKYIVSGDG------DNSLRIWPTSPQTHKDDERFTVS------------------------  150 (392)
Q Consensus       107 ~~~~----~~~~~~~--~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~------------------------  150 (392)
                      ....    ..+.-+|  .+..++++..      +|.|..+|.++++..-.......                        
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            4211    0111112  1234444432      57888888876543211111000                        


Q ss_pred             ----cccce-EEEEEEcCCCEEEEeeCC-----C-----------cEEEEEcCCCeEEEEEecCCCc---------eeEE
Q psy17243        151 ----HSEEI-TCFTVTWDSQYLITGSRD-----M-----------SLKVWQVVGGKLAQVLVGHTDH---------VSCV  200 (392)
Q Consensus       151 ----~~~~v-~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~---------v~~~  200 (392)
                          ....+ ..+++.+...+++.+..+     +           .|.-.|+++++..-.++.....         ..-+
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~  306 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF  306 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence                01111 234666666677766522     2           5777888999887666532211         1112


Q ss_pred             EEecCCC---cEEEEecCCCeEEEEECCCCceee
Q psy17243        201 AVAVTNK---SLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       201 ~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      .+. .++   ..++.+..+|.+++.|..+|+.+.
T Consensus       307 d~~-~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       307 DLK-KDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             Eec-cCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            221 244   488899999999999999998863

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.86  E-value=0.24  Score=42.09  Aligned_cols=152  Identities=11%  Similarity=0.103  Sum_probs=77.7

Q ss_pred             cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE-cCCcee
Q psy17243         24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV-ADNAQL  102 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~  102 (392)
                      .-.+.+..+.-+++|+++++++.-....-||.-...-...-......|..|.|.|++...+.+ ..|.|+.=+ ....+.
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            345778888899999998888766666677744322222233356789999999997766644 888888887 333333


Q ss_pred             eeecc------c-ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCc
Q psy17243        103 LYSAL------G-PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS  175 (392)
Q Consensus       103 ~~~~~------~-~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (392)
                      .....      . .+..+++.+++...++|+. |.+. .....++.-+..............+.|.++.+-++. +.+|.
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~  297 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGV  297 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTE
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcE
Confidence            22211      1 2467788888766665554 5443 333333332222222233556788888866554554 45777


Q ss_pred             EEEE
Q psy17243        176 LKVW  179 (392)
Q Consensus       176 i~i~  179 (392)
                      |--|
T Consensus       298 ll~~  301 (302)
T PF14870_consen  298 LLRY  301 (302)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6554

>KOG4441|consensus

Probab=96.85  E-value=0.29  Score=45.92  Aligned_cols=187  Identities=14%  Similarity=0.112  Sum_probs=104.2

Q ss_pred             CCCeEEEEeCC------CeEEEEeCCCCceeEEecc-cccceEEEEEecCCCEEEEEeCC------CeEEEEEcCCceee
Q psy17243         37 NSIFAVSGSED------NTAKVWGLTLGSVVSTFKS-HQSTILAVAVLSDSRRVVTSDKA------GVIAVWVADNAQLL  103 (392)
Q Consensus        37 ~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~  103 (392)
                      .+.+++.|+.+      ..+..||..+++......- ....-.+++.. ++...++|+.+      ..+..||..+.+-.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            45567777776      4688899887754332221 22233444554 45677888888      35778888877633


Q ss_pred             eec--ccceeEE-EEeCCCCEEEEecCCC-----cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC--
Q psy17243        104 YSA--LGPSKCL-TVTHNMKYIVSGDGDN-----SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD--  173 (392)
Q Consensus       104 ~~~--~~~~~~~-~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--  173 (392)
                      ...  ..+-... ...-+|...++|+.||     .+..||..+.+......... .......  ..-++.+.++|+.+  
T Consensus       363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv--~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGV--AVLGGKLYIIGGGDGS  439 (571)
T ss_pred             ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEE--EEECCEEEEEcCcCCC
Confidence            211  1111112 2234777888888886     47788887654433322211 1111111  22257777777754  


Q ss_pred             ----CcEEEEEcCCCeEEEE--EecCCCceeEEEEecCCCcEEEEecCCCe-----EEEEECCCCcee
Q psy17243        174 ----MSLKVWQVVGGKLAQV--LVGHTDHVSCVAVAVTNKSLVVSGSKDSN-----LIVWDMETGGEE  230 (392)
Q Consensus       174 ----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~  230 (392)
                          ..+..||..+.+-...  +..-... ..++.  -++.+.+.|+.|+.     |..||..+.+-.
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~  504 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWT  504 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCccccccc-ceEEE--ECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence                3577888877653322  1111111 12333  36778888887763     677887766543

>KOG2079|consensus

Probab=96.82  E-value=0.053  Score=52.37  Aligned_cols=94  Identities=20%  Similarity=0.342  Sum_probs=65.0

Q ss_pred             CccCCeEEEEECCCc-cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEE---EEe
Q psy17243          2 GGMDCLVNVWQMNSH-ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAV---AVL   77 (392)
Q Consensus         2 g~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~---~~~   77 (392)
                      |++.|.|-..|.... .....=..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+...+   .+.
T Consensus       105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t  184 (1206)
T KOG2079|consen  105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRT  184 (1206)
T ss_pred             EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEe
Confidence            344455555554321 1112222346799999999999999999999999999999999998888776665444   444


Q ss_pred             cCCCEEEEEeCCCeEEEEEc
Q psy17243         78 SDSRRVVTSDKAGVIAVWVA   97 (392)
Q Consensus        78 ~~~~~l~~~~~d~~i~iwd~   97 (392)
                      .++..++++...|.  +|.+
T Consensus       185 ~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  185 SQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCCcEEEEccCCCc--eEEE
Confidence            55667777777776  4543

>KOG1897|consensus

Probab=96.79  E-value=0.55  Score=45.39  Aligned_cols=223  Identities=11%  Similarity=0.059  Sum_probs=115.9

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-ccccceEEEEEecCC------CEEEEEeCCCeEEEEEcC
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSDS------RRVVTSDKAGVIAVWVAD   98 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~   98 (392)
                      ...++....+.+...++.++.++.+...+++.+......+ ..+..|.|+.++|-+      +.+++|..+..+.+.-..
T Consensus       487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~  566 (1096)
T KOG1897|consen  487 PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL  566 (1096)
T ss_pred             CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence            3445555555555567777777777777777665322221 245679999998752      267888877765554332


Q ss_pred             -Cceeeeec--cc-----ceeEEEEeCCCCEEEEecCCCcEEEEeCCC--CCCCCcceeeeccccceEEEEEEcCCCEEE
Q psy17243         99 -NAQLLYSA--LG-----PSKCLTVTHNMKYIVSGDGDNSLRIWPTSP--QTHKDDERFTVSHSEEITCFTVTWDSQYLI  168 (392)
Q Consensus        99 -~~~~~~~~--~~-----~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (392)
                       +...+...  ..     .+--..+-.+..+|.++..||.+..|.+..  +......+.. -...++.--.|+..++.-+
T Consensus       567 pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~-lGt~P~~Lr~f~sk~~t~v  645 (1096)
T KOG1897|consen  567 PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT-LGTQPISLRTFSSKSRTAV  645 (1096)
T ss_pred             CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccc-cCCCCcEEEEEeeCCceEE
Confidence             22222211  11     222334455688999999999998775543  2222222222 2334555556666554444


Q ss_pred             EeeCCCcEEEEEcCCCeEEEEEecCCCceeE-EEEec-CCCcEEEEecCCCeEEEEECCCCcee--eeecccccceeEEE
Q psy17243        169 TGSRDMSLKVWQVVGGKLAQVLVGHTDHVSC-VAVAV-TNKSLVVSGSKDSNLIVWDMETGGEE--HFLAGHLGCVTCVK  244 (392)
Q Consensus       169 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~  244 (392)
                      .+..|.-..+|..+ ++....-..- ..+.. ..|+. .....++++ ..+.+++..++.-+.+  ++++ -......++
T Consensus       646 fa~sdrP~viY~~n-~kLv~spls~-kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvp-l~~~prrI~  721 (1096)
T KOG1897|consen  646 FALSDRPTVIYSSN-GKLVYSPLSL-KEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVP-LGESPRRIC  721 (1096)
T ss_pred             EEeCCCCEEEEecC-CcEEEeccch-HHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeec-CCCChhheE
Confidence            44456666677643 4433221111 11111 12221 223445544 3567887776654333  2333 223456677


Q ss_pred             EcCCCeEEE
Q psy17243        245 LAGDGTVAM  253 (392)
Q Consensus       245 ~~~dg~~~~  253 (392)
                      +.+....+.
T Consensus       722 ~q~~sl~~~  730 (1096)
T KOG1897|consen  722 YQESSLTFG  730 (1096)
T ss_pred             ecccceEEE
Confidence            776444333

>PHA02713 hypothetical protein; Provisional

Probab=96.79  E-value=0.071  Score=49.96  Aligned_cols=153  Identities=8%  Similarity=-0.003  Sum_probs=79.9

Q ss_pred             CCCeEEEEeCCC-----eEEEEeCCCCceeE--EecccccceEEEEEecCCCEEEEEeCCC-------------------
Q psy17243         37 NSIFAVSGSEDN-----TAKVWGLTLGSVVS--TFKSHQSTILAVAVLSDSRRVVTSDKAG-------------------   90 (392)
Q Consensus        37 ~~~~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------------   90 (392)
                      +++..+.|+.++     .+..||..+.+-..  .+.........+  .-+++..+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccc
Confidence            566777777653     48889987764332  222111111112  22566777776542                   


Q ss_pred             ----eEEEEEcCCceeeee--ccc-ceeEEEEeCCCCEEEEecCC------CcEEEEeCCC-CCCCCcceeeeccccceE
Q psy17243         91 ----VIAVWVADNAQLLYS--ALG-PSKCLTVTHNMKYIVSGDGD------NSLRIWPTSP-QTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        91 ----~i~iwd~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~~~d------~~i~~~d~~~-~~~~~~~~~~~~~~~~v~  156 (392)
                          .+..||..+.+-...  ... ....-...-+++..+.|+.+      ..+..||..+ .+........  ......
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~--~~r~~~  506 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE--SRLSAL  506 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC--cccccc
Confidence                477788877644221  111 11122233456666667653      2467899876 3333222111  111122


Q ss_pred             EEEEEcCCCEEEEeeCCC--cEEEEEcCCCeEEEEEecCC
Q psy17243        157 CFTVTWDSQYLITGSRDM--SLKVWQVVGGKLAQVLVGHT  194 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~  194 (392)
                      .++.. ++++.++|+.++  .+..||..+.+-...-..|.
T Consensus       507 ~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~  545 (557)
T PHA02713        507 HTILH-DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS  545 (557)
T ss_pred             eeEEE-CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence            22222 678888888887  67788887766544433343

>KOG2395|consensus

Probab=96.69  E-value=0.018  Score=50.99  Aligned_cols=137  Identities=18%  Similarity=0.241  Sum_probs=86.8

Q ss_pred             EEeCCCCEEE-EecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCC-------EEEEeeCCCcEEEEEcCCCe
Q psy17243        114 TVTHNMKYIV-SGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQ-------YLITGSRDMSLKVWQVVGGK  185 (392)
Q Consensus       114 ~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~  185 (392)
                      ....+.++++ .+.....++-.|++.++......+.    ..|+.+.+.|+.+       .-+.|-.+..|.-||.+-..
T Consensus       340 L~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~----~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~  415 (644)
T KOG2395|consen  340 LHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFE----DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG  415 (644)
T ss_pred             hhccccceEeeCCCCcCcceeeecccceeeeEeecc----CCcceeeccCCcchhcccccccEEeecCCceEEecccccC
Confidence            3333444443 3444566777777755544443332    2266667777532       23456678889999997432


Q ss_pred             --EEEEEecC----CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee-eeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        186 --LAQVLVGH----TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE-HFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       186 --~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                        .+..-.+|    .....|.+-.  ...+++.|+.+|.|++||- .+... ..+++...+|..+..+.||++++...+
T Consensus       416 ~~kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  416 KNKLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             cceeeeeeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence              22222222    2234455543  5668899999999999997 44433 367888889999999999999887754

>PHA03098 kelch-like protein; Provisional

Probab=96.63  E-value=0.26  Score=46.23  Aligned_cols=185  Identities=14%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             CCCeEEEEeCCC------eEEEEeCCCCceeEEecccccc-eEEEEEecCCCEEEEEeCC-----CeEEEEEcCCceeee
Q psy17243         37 NSIFAVSGSEDN------TAKVWGLTLGSVVSTFKSHQST-ILAVAVLSDSRRVVTSDKA-----GVIAVWVADNAQLLY  104 (392)
Q Consensus        37 ~~~~l~~~~~dg------~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~  104 (392)
                      ++..++.|+.++      .+..||..+.+....-...... -.+++ .-+++.++.|+.+     ..+..||..+.+-..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            445666666542      4777887776543211111111 11222 2256677777765     347778887664332


Q ss_pred             ec--ccce-eEEEEeCCCCEEEEecCC------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC--
Q psy17243        105 SA--LGPS-KCLTVTHNMKYIVSGDGD------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD--  173 (392)
Q Consensus       105 ~~--~~~~-~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--  173 (392)
                      ..  ..+. .......+++..+.|+.+      ..+..||+.+..............  -.++ ...++..++.|+.+  
T Consensus       373 ~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~--~~~~-~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        373 EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY--GGCA-IYHDGKIYVIGGISYI  449 (534)
T ss_pred             CCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc--CceE-EEECCEEEEECCccCC
Confidence            11  1111 111223356666666632      457889987654332221111111  1122 22356666666542  


Q ss_pred             ------CcEEEEEcCCCeEEEEEec-CCCceeEEEEecCCCcEEEEecCC-----CeEEEEECCCC
Q psy17243        174 ------MSLKVWQVVGGKLAQVLVG-HTDHVSCVAVAVTNKSLVVSGSKD-----SNLIVWDMETG  227 (392)
Q Consensus       174 ------g~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  227 (392)
                            ..+.+||..+.+-...-.. ....-.+++.  .++.+++.|+.+     +.+.+||..+.
T Consensus       450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence                  2388899887653322110 0111111222  246666666654     35677776654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.59  E-value=0.34  Score=40.27  Aligned_cols=146  Identities=14%  Similarity=0.087  Sum_probs=89.9

Q ss_pred             CeeEEEecCCCCeEEEEe-CCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE-cCCcee--e
Q psy17243         28 TVSCVAISPNSIFAVSGS-EDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV-ADNAQL--L  103 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~--~  103 (392)
                      .+.+.+++++++.++... .++.-.+|-...+....... ....+..-.|.+++...+....+...+++. ..++..  .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            688999999998776655 23333344334443333332 233778889999987777777666666663 233322  1


Q ss_pred             --eec--ccceeEEEEeCCCCEEEEec---CCCcEEEEeCCCCCCC------CcceeeeccccceEEEEEEcCCCEEEEe
Q psy17243        104 --YSA--LGPSKCLTVTHNMKYIVSGD---GDNSLRIWPTSPQTHK------DDERFTVSHSEEITCFTVTWDSQYLITG  170 (392)
Q Consensus       104 --~~~--~~~~~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~  170 (392)
                        ...  ...+..+.++|||..++...   .++.|.+--+......      ............+..+.|.+++.+++.+
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~  183 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG  183 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence              111  12789999999999888766   3577777654422222      1112222335688999999999877776


Q ss_pred             eCCC
Q psy17243        171 SRDM  174 (392)
Q Consensus       171 ~~dg  174 (392)
                      ...+
T Consensus       184 ~~~~  187 (253)
T PF10647_consen  184 RSAG  187 (253)
T ss_pred             CCCC
Confidence            6543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.57  E-value=0.01  Score=34.22  Aligned_cols=30  Identities=10%  Similarity=0.141  Sum_probs=24.7

Q ss_pred             ccceEEEEEecCCCEEEEEeCCCeEEEEEc
Q psy17243         68 QSTILAVAVLSDSRRVVTSDKAGVIAVWVA   97 (392)
Q Consensus        68 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   97 (392)
                      ...|..++|+|....|+.+..+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            456888888888888888888888888887

>KOG3630|consensus

Probab=96.48  E-value=0.057  Score=52.47  Aligned_cols=178  Identities=13%  Similarity=0.053  Sum_probs=105.3

Q ss_pred             eEEEecCCCCeEEEEeCCCeEEEEeCCCC----------------ceeEEeccc-ccceEEEEEecCCCEEEEEe--CCC
Q psy17243         30 SCVAISPNSIFAVSGSEDNTAKVWGLTLG----------------SVVSTFKSH-QSTILAVAVLSDSRRVVTSD--KAG   90 (392)
Q Consensus        30 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----------------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~d~   90 (392)
                      ..++.++.-..+++++..+.+.|+-..+-                .....++.| .-+|..+...+|+...++..  .+-
T Consensus        45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~  124 (1405)
T KOG3630|consen   45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE  124 (1405)
T ss_pred             hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence            34555665555666666666666643211                011222222 34566666677766554443  344


Q ss_pred             eEEEEEcCCceeee--------ec------ccceeEEEEeCCCC-EEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         91 VIAVWVADNAQLLY--------SA------LGPSKCLTVTHNMK-YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        91 ~i~iwd~~~~~~~~--------~~------~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      .|..||+++...-.        ..      ..-..++.|+|.-. ..++...|+.|++..+...   .............
T Consensus       125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~---~~~v~s~p~t~~~  201 (1405)
T KOG3630|consen  125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL---AQNVTSFPVTNSQ  201 (1405)
T ss_pred             eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh---hhhhcccCcccce
Confidence            78999987643211        11      11234677777543 4566778899988876522   1111112445678


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec----CCCceeEEEEecCCCcEEEE
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG----HTDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~  212 (392)
                      ++++|+|.|+.++.|...|++.-|-.. .+....+..    ....|.+|+|- ....+++.
T Consensus       202 Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl-~t~eflvv  260 (1405)
T KOG3630|consen  202 TAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWL-STQEFLVV  260 (1405)
T ss_pred             eeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEe-cceeEEEE
Confidence            999999999999999999999999864 333333221    14678999998 45555543

>KOG3630|consensus

Probab=96.47  E-value=0.041  Score=53.39  Aligned_cols=145  Identities=9%  Similarity=-0.061  Sum_probs=90.3

Q ss_pred             ceeEEEEeCCCCEEEEecC--CCcEEEEeCCCCCCCCcce--------eeeccccceEEEEEEcC-CCEEEEeeCCCcEE
Q psy17243        109 PSKCLTVTHNMKYIVSGDG--DNSLRIWPTSPQTHKDDER--------FTVSHSEEITCFTVTWD-SQYLITGSRDMSLK  177 (392)
Q Consensus       109 ~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~  177 (392)
                      ++..+...+|+...++...  +-.|..||+++-.......        ..........++.|+|. ....++...|+.|.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            5556667777665554433  4478899997532221111        11122334456778776 23456666788888


Q ss_pred             EEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc---c-ccceeEEEEcCCCeEEE
Q psy17243        178 VWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG---H-LGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       178 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-~~~v~~~~~~~dg~~~~  253 (392)
                      +..+........--......++++|+ +.+..++.|-.+|++.-|... .+....++.   . ...|.+++|-....+++
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            88775433222212245678999999 778889999999999999754 332223222   2 36899999988877777


Q ss_pred             Ec
Q psy17243        254 SD  255 (392)
Q Consensus       254 ~~  255 (392)
                      .-
T Consensus       260 vy  261 (1405)
T KOG3630|consen  260 VY  261 (1405)
T ss_pred             Ee
Confidence            64

>PHA03098 kelch-like protein; Provisional

Probab=96.34  E-value=0.41  Score=44.97  Aligned_cols=173  Identities=10%  Similarity=0.077  Sum_probs=82.6

Q ss_pred             eEEEEECCCcccee--eeccCCcCeeEEEecCCCCeEEEEeCC-----CeEEEEeCCCCceeEEecc-cccceEEEEEec
Q psy17243          7 LVNVWQMNSHELQS--TMEGHLNTVSCVAISPNSIFAVSGSED-----NTAKVWGLTLGSVVSTFKS-HQSTILAVAVLS   78 (392)
Q Consensus         7 ~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~   78 (392)
                      .+..||..+.+...  .+.........+.  -+++.++.|+.+     ..+..||..+.+-...-.. +...-.+++. -
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~  388 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-V  388 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-E
Confidence            56777776654322  1111111112222  256677777765     3577888776643321111 1111112222 3


Q ss_pred             CCCEEEEEeCC------CeEEEEEcCCceeeeecccce---eEEEEeCCCCEEEEecCC--------CcEEEEeCCCCCC
Q psy17243         79 DSRRVVTSDKA------GVIAVWVADNAQLLYSALGPS---KCLTVTHNMKYIVSGDGD--------NSLRIWPTSPQTH  141 (392)
Q Consensus        79 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~  141 (392)
                      +++..+.|+.+      ..+..||+.+.+-......+.   ...+...++..++.|+.+        ..+.+||..+.+.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence            55666666632      457888988764432211111   112233355666666543        2388888876543


Q ss_pred             CCcceeeeccccceEEEEEEcCCCEEEEeeCC-----CcEEEEEcCCCe
Q psy17243        142 KDDERFTVSHSEEITCFTVTWDSQYLITGSRD-----MSLKVWQVVGGK  185 (392)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  185 (392)
                      ......... ... .+++. .+++.++.|+.+     ..+.+||..+.+
T Consensus       469 ~~~~~~~~~-r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        469 TELSSLNFP-RIN-ASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             eeCCCCCcc-ccc-ceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            322211111 111 11222 256667777654     467888877654

>KOG2280|consensus

Probab=96.32  E-value=0.73  Score=43.25  Aligned_cols=237  Identities=14%  Similarity=0.160  Sum_probs=121.4

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEE--e--cccccceEEEEEecCCC
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST--F--KSHQSTILAVAVLSDSR   81 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~   81 (392)
                      -.|+|+++. |+++..+.-....+-.+.|+.+.. |++...+|++.+|++. |+.+..  .  ......|..+.+..+|-
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence            357888864 666666554444888999998876 5566799999999975 333222  1  12233455555555553


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeeeccc------ceeEEEEeCCCC---EEEEecCCCcEEEEeCCCCCCCCcceeeeccc
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLYSALG------PSKCLTVTHNMK---YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS  152 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  152 (392)
                        ++-..+|.+.+-+-.....+++...      +..|-...+++.   .++-....-...++....... ..... ....
T Consensus       141 --avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~-q~~~~-~~~~  216 (829)
T KOG2280|consen  141 --AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV-QLHAL-SWPN  216 (829)
T ss_pred             --EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccc-ccccc-CCCC
Confidence              3333445554443222212222211      112333333221   111111000011222221111 11111 1123


Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec-CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG-HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      ..+..+..+|+.++|+.-...|.|.+-+....+....+.- ...+...++|. .+..  ++.+.+..+.+..- .|..+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc-gnda--Vvl~~e~~l~lvgp-~gd~V~  292 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC-GNDA--VVLSWEVNLMLVGP-PGDSVQ  292 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceee-cCCc--eEEEEeeeEEEEcC-CCCccc
Confidence            6678889999999999999999999998877776665541 11223366776 3331  12223333444432 233333


Q ss_pred             eecccccceeEEEEcCCCeEEEEcC
Q psy17243        232 FLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .+..+..   .+.--+||-.+++..
T Consensus       293 f~yd~t~---~l~~E~DGVRI~t~t  314 (829)
T KOG2280|consen  293 FYYDETA---ILSAEVDGVRIITST  314 (829)
T ss_pred             cccCCCc---eeeeccCeeEEeccc
Confidence            3333322   266667888888764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.30  E-value=1.2  Score=43.36  Aligned_cols=188  Identities=12%  Similarity=0.081  Sum_probs=107.3

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcC--------eeEEEecC----------------CCCeEEEEeCCCeEEEEeCCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNT--------VSCVAISP----------------NSIFAVSGSEDNTAKVWGLTL   57 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~--------v~~~~~~~----------------~~~~l~~~~~dg~v~iwd~~~   57 (392)
                      ++.++.|.-.|..+|+.+..+......        ...+.+..                .+..++.++.|+.+.-.|.++
T Consensus       200 ~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~T  279 (764)
T TIGR03074       200 CTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADT  279 (764)
T ss_pred             ECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCC
Confidence            456788888999999988877532211        12233321                234788888999999999999


Q ss_pred             CceeEEecccccceE-------------EEEEec--CCCEEEEEeC----------CCeEEEEEcCCceeeeecccc---
Q psy17243         58 GSVVSTFKSHQSTIL-------------AVAVLS--DSRRVVTSDK----------AGVIAVWVADNAQLLYSALGP---  109 (392)
Q Consensus        58 ~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~---  109 (392)
                      |+.+..+.. ++.|.             .+.-.|  .+..+++++.          +|.|+-+|.++++.+......   
T Consensus       280 Gk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~  358 (764)
T TIGR03074       280 GKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPD  358 (764)
T ss_pred             CCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCC
Confidence            999877642 22110             001111  1335666643          688999999999987654310   


Q ss_pred             ---------e---------eEEEEeCCCCEEEEecCC------------------CcEEEEeCCCCCCCCcceeeecc--
Q psy17243        110 ---------S---------KCLTVTHNMKYIVSGDGD------------------NSLRIWPTSPQTHKDDERFTVSH--  151 (392)
Q Consensus       110 ---------~---------~~~~~~~~~~~l~~~~~d------------------~~i~~~d~~~~~~~~~~~~~~~~--  151 (392)
                               .         ...++.++...++.+..+                  +.|.-.|.++++..-..+.. .|  
T Consensus       359 ~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~-~hD~  437 (764)
T TIGR03074       359 PTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV-HHDL  437 (764)
T ss_pred             cccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc-CCcc
Confidence                     0         123444444454443322                  23444444443322111110 11  


Q ss_pred             -----ccceEEEEEEc-CCC---EEEEeeCCCcEEEEEcCCCeEEEEEe
Q psy17243        152 -----SEEITCFTVTW-DSQ---YLITGSRDMSLKVWQVVGGKLAQVLV  191 (392)
Q Consensus       152 -----~~~v~~~~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~  191 (392)
                           ..+..-+.+.. +++   .++.++.+|.++++|.++++++...+
T Consensus       438 WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       438 WDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             ccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence                 11112222322 453   78999999999999999999876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK10115 protease 2; Provisional

Probab=96.25  E-value=1.2  Score=43.02  Aligned_cols=192  Identities=11%  Similarity=0.078  Sum_probs=102.2

Q ss_pred             cCeeEEEecCCCCeEEEEeC-----CCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC------CeEEEE
Q psy17243         27 NTVSCVAISPNSIFAVSGSE-----DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA------GVIAVW   95 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iw   95 (392)
                      -.+..+.++|++++|+.+..     ...|++.|+.++..+...-....  ..++|.+|++.|+....+      ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            34677899999998876532     24588999988864332221111  569999999877665442      367888


Q ss_pred             EcCCc----eeeeecc-ccee-EEEEeCCCCEEEEecC---CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCE
Q psy17243         96 VADNA----QLLYSAL-GPSK-CLTVTHNMKYIVSGDG---DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY  166 (392)
Q Consensus        96 d~~~~----~~~~~~~-~~~~-~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (392)
                      ++.++    .++.... .... ....+.++++++..+.   ++.+.+++........  .........+..-..+.. ..
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~  281 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP--FVFLPRRKDHEYSLDHYQ-HR  281 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc--eEEEECCCCCEEEEEeCC-CE
Confidence            88877    2343322 2222 2233447777665443   4578888854321111  111122222221112222 33


Q ss_pred             EEEeeC----CCcEEEEEcCCCeEEEEEecC-C-CceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        167 LITGSR----DMSLKVWQVVGGKLAQVLVGH-T-DHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       167 l~~~~~----dg~i~i~d~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      |+.-+.    ...|...++.+......+..+ . ..+..+.+.  .+.++++...+|.-+++-+.
T Consensus       282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEc
Confidence            333332    223444455422222333344 3 367777776  55677777778775555443

>PHA02790 Kelch-like protein; Provisional

Probab=96.23  E-value=0.77  Score=42.39  Aligned_cols=180  Identities=12%  Similarity=0.129  Sum_probs=88.2

Q ss_pred             CCCeEEEEeCCC-----eEEEEeCCCCceeEE--ecccccceEEEEEecCCCEEEEEeCC--CeEEEEEcCCceeee--e
Q psy17243         37 NSIFAVSGSEDN-----TAKVWGLTLGSVVST--FKSHQSTILAVAVLSDSRRVVTSDKA--GVIAVWVADNAQLLY--S  105 (392)
Q Consensus        37 ~~~~l~~~~~dg-----~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~--~  105 (392)
                      ++.+++.|+.++     .+..||..+.+....  +...... .+++ .-++...++|+.+  ..+..||..+.+-..  .
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            445567776543     467788777654322  2211111 1222 2356666777653  357888876654322  2


Q ss_pred             ccccee-EEEEeCCCCEEEEecCC---CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEc
Q psy17243        106 ALGPSK-CLTVTHNMKYIVSGDGD---NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV  181 (392)
Q Consensus       106 ~~~~~~-~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  181 (392)
                      +..+.. .....-+++..+.|+.+   ..+..||.++.............. . .+++ .-+++..+.|   |.+.+||.
T Consensus       349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~-~-~~~~-~~~~~IYv~G---G~~e~ydp  422 (480)
T PHA02790        349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY-K-SCAL-VFGRRLFLVG---RNAEFYCE  422 (480)
T ss_pred             CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc-c-ceEE-EECCEEEEEC---CceEEecC
Confidence            222221 22233467777777754   346788886544332211111111 1 1222 2355555555   35788998


Q ss_pred             CCCeEEEE--EecCCCceeEEEEecCCCcEEEEecCC-----CeEEEEECCCC
Q psy17243        182 VGGKLAQV--LVGHTDHVSCVAVAVTNKSLVVSGSKD-----SNLIVWDMETG  227 (392)
Q Consensus       182 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  227 (392)
                      ++.+-...  +....... +++.  -++.+.+.|+.+     ..+..||..+.
T Consensus       423 ~~~~W~~~~~m~~~r~~~-~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        423 SSNTWTLIDDPIYPRDNP-ELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCcEeEcCCCCCCcccc-EEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            77654322  11111112 2233  256777777754     34666666544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.22  E-value=0.58  Score=38.92  Aligned_cols=150  Identities=19%  Similarity=0.108  Sum_probs=89.3

Q ss_pred             ceEEEEEecCCCEEEEEe---CCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEe-CCCCCCCCcc
Q psy17243         70 TILAVAVLSDSRRVVTSD---KAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWP-TSPQTHKDDE  145 (392)
Q Consensus        70 ~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~~~~~  145 (392)
                      .+.+.+++++++.++...   ....++++.................-.|++++...++...+...+++. ...... ...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~-~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG-EPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc-eeE
Confidence            688999999999877666   334566665544333322233556778889977777767666666663 221111 111


Q ss_pred             eeeeccc-cceEEEEEEcCCCEEEEee---CCCcEEEEEcC---CC------eEEEEEecCCCceeEEEEecCCCcEEEE
Q psy17243        146 RFTVSHS-EEITCFTVTWDSQYLITGS---RDMSLKVWQVV---GG------KLAQVLVGHTDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       146 ~~~~~~~-~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~  212 (392)
                      ....... ..|..+.++|||..++...   .++.|.+--+.   .+      .+..........++.+.|. .+..+++.
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~-~~~~L~V~  182 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS-DDSTLVVL  182 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec-CCCEEEEE
Confidence            1111111 2899999999999877665   35677776553   22      1122222335678999999 55566555


Q ss_pred             ecC-CCeEEE
Q psy17243        213 GSK-DSNLIV  221 (392)
Q Consensus       213 ~~~-dg~i~i  221 (392)
                      +.. ++.+..
T Consensus       183 ~~~~~~~~~~  192 (253)
T PF10647_consen  183 GRSAGGPVVR  192 (253)
T ss_pred             eCCCCCceeE
Confidence            544 443444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.09  E-value=0.53  Score=38.77  Aligned_cols=144  Identities=12%  Similarity=0.065  Sum_probs=86.7

Q ss_pred             eEEEEeCCC-CEEEEecCCC-cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC-----CcEEEEEcCC
Q psy17243        111 KCLTVTHNM-KYIVSGDGDN-SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-----MSLKVWQVVG  183 (392)
Q Consensus       111 ~~~~~~~~~-~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  183 (392)
                      ..++++|.. .-++.+-.-| ...++|.............. ...-.-.=.|+|||.+|++.-.|     |.|-|||.+.
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~-~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE-GRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc-CceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            356666643 3344444444 34677876443322221111 11111122599999999987654     7899999985


Q ss_pred             C-eEEEEEecCCCceeEEEEecCCCcEEEEecC------------------CCeEEEEECCCCceeee--ec--ccccce
Q psy17243        184 G-KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK------------------DSNLIVWDMETGGEEHF--LA--GHLGCV  240 (392)
Q Consensus       184 ~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~--~~--~~~~~v  240 (392)
                      + +.+..+..|.-....+.+. .++..++.+..                  .-++.+.|..+|+.+.+  +.  .+...|
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm-~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi  228 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLM-ADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI  228 (366)
T ss_pred             ccceecccccCCcCcceeEEe-cCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence            4 4566777787777888888 66666665421                  11344555556665542  33  344578


Q ss_pred             eEEEEcCCCeEEEEcC
Q psy17243        241 TCVKLAGDGTVAMSDL  256 (392)
Q Consensus       241 ~~~~~~~dg~~~~~~~  256 (392)
                      ..++..+||++....-
T Consensus       229 RHld~g~dgtvwfgcQ  244 (366)
T COG3490         229 RHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             eeeeeCCCCcEEEEEE
Confidence            9999999999887653

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.02  E-value=0.71  Score=43.77  Aligned_cols=143  Identities=8%  Similarity=0.075  Sum_probs=90.5

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeE------Eec----------------ccccceEEEEEe--cCCCEEEEEeCCCeEE
Q psy17243         38 SIFAVSGSEDNTAKVWGLTLGSVVS------TFK----------------SHQSTILAVAVL--SDSRRVVTSDKAGVIA   93 (392)
Q Consensus        38 ~~~l~~~~~dg~v~iwd~~~~~~~~------~~~----------------~~~~~v~~~~~~--~~~~~l~~~~~d~~i~   93 (392)
                      ..+++.+. .+.|.||++..-....      .+.                .....|+.|...  -+...|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            55666664 6889999986432211      110                011234444332  2456789999999999


Q ss_pred             EEEcCCc----------------------eeeeecccceeEEEEe--CCCCEEEEecCCCcEEEEeCCCCCCCCcceeee
Q psy17243         94 VWVADNA----------------------QLLYSALGPSKCLTVT--HNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV  149 (392)
Q Consensus        94 iwd~~~~----------------------~~~~~~~~~~~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  149 (392)
                      +|..+.-                      ............++++  ...+++|+++....|.||-..............
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            9965311                      0111222355678888  788899999999999988665432222221122


Q ss_pred             ccccceEEEEEEcCC---C---EEEEeeCCCcEEEEEc
Q psy17243        150 SHSEEITCFTVTWDS---Q---YLITGSRDMSLKVWQV  181 (392)
Q Consensus       150 ~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~d~  181 (392)
                      .+...|.+++|.++.   .   .+++++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            466788999998753   2   7788888999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.92  E-value=0.47  Score=43.25  Aligned_cols=147  Identities=12%  Similarity=0.157  Sum_probs=92.8

Q ss_pred             cCeeEEEecCCCCeEEEEe--CCCeEEEEeCCCCceeEEecccccceEEEEEecC----CCEEEEEeCCCeEEEEEcC--
Q psy17243         27 NTVSCVAISPNSIFAVSGS--EDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD----SRRVVTSDKAGVIAVWVAD--   98 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~--   98 (392)
                      .+|..++|....+.+++.-  .+|.+++=|   .+.+..|.    -|..+.|.|-    ...+++.-....|.+|.+.  
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            4788999985555555542  334443322   23344443    4888999885    3467777788899999875  


Q ss_pred             ---Cceeeeecc----c----ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEE
Q psy17243         99 ---NAQLLYSAL----G----PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYL  167 (392)
Q Consensus        99 ---~~~~~~~~~----~----~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  167 (392)
                         ..+.+....    .    -.....|+|....|++-.....-.+++++....  ..+......+.|.|.+|.+||+.|
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eEEEeccCCceEEEEEecCcCCEE
Confidence               223222211    1    124678999999888877666555666654332  233334667889999999999887


Q ss_pred             EEeeC-CCcEEEEEcC
Q psy17243        168 ITGSR-DMSLKVWQVV  182 (392)
Q Consensus       168 ~~~~~-dg~i~i~d~~  182 (392)
                      +++-. .=.-+|||-.
T Consensus       171 VVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEeCCeEEEEEecCc
Confidence            76543 3356788853

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.90  E-value=0.8  Score=37.74  Aligned_cols=187  Identities=13%  Similarity=0.071  Sum_probs=116.1

Q ss_pred             ceeEEeccccc--ceEEEEEecCCCEEEEEeCCC--eEEEEEcCCceeeeecccce----eEEEEeCCCCEEEEecCCCc
Q psy17243         59 SVVSTFKSHQS--TILAVAVLSDSRRVVTSDKAG--VIAVWVADNAQLLYSALGPS----KCLTVTHNMKYIVSGDGDNS  130 (392)
Q Consensus        59 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~d~~  130 (392)
                      +.+.++. |+.  -...+.|..++..+-+.+.-|  .|+.+|+.+++.+....-+.    ..++... ++.....-.++.
T Consensus        34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~  111 (264)
T PF05096_consen   34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSE
T ss_pred             EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCe
Confidence            3455555 433  356678877888888888777  78999999998876544322    3444443 344445567889


Q ss_pred             EEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecC--C---CceeEEEEecC
Q psy17243        131 LRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH--T---DHVSCVAVAVT  205 (392)
Q Consensus       131 i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~~~~~~~  205 (392)
                      ..+||..+.+.....    .....=..++  .+++.|+.+.....|+++|..+.+....+.-.  .   ..++-+.+.  
T Consensus       112 ~f~yd~~tl~~~~~~----~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--  183 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTF----PYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--  183 (264)
T ss_dssp             EEEEETTTTEEEEEE----E-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred             EEEEccccceEEEEE----ecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence            999999754333222    2223445555  46777887777889999999888777665432  2   245667776  


Q ss_pred             CCcEEEEecCCCeEEEEECCCCceeeeecc------------c---ccceeEEEEcCC-CeEEEEc
Q psy17243        206 NKSLVVSGSKDSNLIVWDMETGGEEHFLAG------------H---LGCVTCVKLAGD-GTVAMSD  255 (392)
Q Consensus       206 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~~~~~~d-g~~~~~~  255 (392)
                      ++.+.+-.=....|...|..+|+.+..+.-            +   ....+.+++.|. +++++++
T Consensus       184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            577777666778899999999988765420            1   246789999775 5566665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1916|consensus

Probab=95.87  E-value=0.01  Score=55.87  Aligned_cols=102  Identities=16%  Similarity=0.243  Sum_probs=67.4

Q ss_pred             CeEEEEECC--Cccceeeec-----cCCcCeeEEEecC---CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEE
Q psy17243          6 CLVNVWQMN--SHELQSTME-----GHLNTVSCVAISP---NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVA   75 (392)
Q Consensus         6 g~i~vwd~~--~~~~~~~~~-----~h~~~v~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~   75 (392)
                      |.+.||++.  .|++...+.     .-...+.-+.|.|   +..++..+-.++.+++.+++.... ..+..|...+..++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            566788874  455444432     2233445555555   666777788888998887765443 45556888888888


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeC
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPT  136 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~  136 (392)
                      |...|-.++.+                            ++|||..|+.++.||.+++|.+
T Consensus       232 ~~~~g~~~l~~----------------------------lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  232 FFAEGVLKLAS----------------------------LSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             HHhhchhhhee----------------------------eCCCCcEEEEeecCCccceeee
Confidence            77665332221                            6788888888889998888865

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.86  E-value=1.9  Score=41.70  Aligned_cols=74  Identities=14%  Similarity=0.107  Sum_probs=51.6

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCC----------CCce--e-EEe--------cccccceEEEEEecC---CCE
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLT----------LGSV--V-STF--------KSHQSTILAVAVLSD---SRR   82 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~----------~~~~--~-~~~--------~~~~~~v~~~~~~~~---~~~   82 (392)
                      -.|..+.++|+|.+|+..+..|.+ |-.+.          .|+.  . +++        ..+...|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            468889999999999988876644 43332          1111  1 111        123457899999987   478


Q ss_pred             EEEEeCCCeEEEEEcCCce
Q psy17243         83 VVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        83 l~~~~~d~~i~iwd~~~~~  101 (392)
                      |++-..|+.+++||+...+
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            9999999999999996443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1897|consensus

Probab=95.74  E-value=2.2  Score=41.59  Aligned_cols=97  Identities=13%  Similarity=0.159  Sum_probs=64.7

Q ss_pred             eEEEEEEcC-CCEEEEeeC----------CCcEEEEEcCCCeEEEEEecC--CCceeEEEEecCCCcEEEEecCCCeEEE
Q psy17243        155 ITCFTVTWD-SQYLITGSR----------DMSLKVWQVVGGKLAQVLVGH--TDHVSCVAVAVTNKSLVVSGSKDSNLIV  221 (392)
Q Consensus       155 v~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~i  221 (392)
                      +.++.|..| +.++++|..          .|.|.+|.....+.++....+  .+.+.++..  -++.++|+  -+..|++
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA~--In~~vrL  852 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLAG--INQSVRL  852 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEEe--cCcEEEE
Confidence            444456666 667777752          478888888774444443222  334444433  35766664  4678999


Q ss_pred             EECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        222 WDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       222 wd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      |+..+.+.++.-..+..++..+...-.|..++.+
T Consensus       853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~Vg  886 (1096)
T KOG1897|consen  853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVG  886 (1096)
T ss_pred             EEccccceehhhhcccCCeEEEEEEecCcEEEEe
Confidence            9999988888777788888888887776666654

>PRK13684 Ycf48-like protein; Provisional

Probab=95.72  E-value=1.3  Score=38.71  Aligned_cols=149  Identities=9%  Similarity=0.081  Sum_probs=81.7

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEE-EeCCCCceeEEe-cccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKV-WGLTLGSVVSTF-KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL  103 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~i-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  103 (392)
                      ...+..+.+.|++.+++++. .|.+.. ++ ..++.-..+ ..-...++++.+.++++.++++ ..|.+++=..+.+...
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            45688999999987766654 565443 22 222222222 2345678999999988776654 5676653334444332


Q ss_pred             eecc-------cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcE
Q psy17243        104 YSAL-------GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSL  176 (392)
Q Consensus       104 ~~~~-------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  176 (392)
                      ....       .....+.+.+++..++ ++.+|.+.. ....+..................+.|..+++.+++ +..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceE
Confidence            2211       2345677888776555 445665543 23322222222111122245777777766666554 457777


Q ss_pred             EEEE
Q psy17243        177 KVWQ  180 (392)
Q Consensus       177 ~i~d  180 (392)
                      ..|+
T Consensus       326 l~~~  329 (334)
T PRK13684        326 LRYV  329 (334)
T ss_pred             EEec
Confidence            7665

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.65  E-value=1.5  Score=38.96  Aligned_cols=139  Identities=11%  Similarity=0.024  Sum_probs=75.3

Q ss_pred             cCeeEEEecCCCCeEEEEe-----------CCC-eEEEEeCCC--Cce--eEEecccccceEEEEEecCCCEEEEEeCCC
Q psy17243         27 NTVSCVAISPNSIFAVSGS-----------EDN-TAKVWGLTL--GSV--VSTFKSHQSTILAVAVLSDSRRVVTSDKAG   90 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   90 (392)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  |+.  ...+...-.....+++.+++  |+++....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            3456899999998766642           223 677776432  332  23333333456889998888  44444444


Q ss_pred             eEEEEEcCC-------ceeeee-cc-------cceeEEEEeCCCCEEEEecCC-------------------CcEEEEeC
Q psy17243         91 VIAVWVADN-------AQLLYS-AL-------GPSKCLTVTHNMKYIVSGDGD-------------------NSLRIWPT  136 (392)
Q Consensus        91 ~i~iwd~~~-------~~~~~~-~~-------~~~~~~~~~~~~~~l~~~~~d-------------------~~i~~~d~  136 (392)
                      ..++.|...       .+.+.. +.       .....+.+.|++.+.++-+..                   +.|..++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            333444432       122221 21       124578899998766544421                   33444444


Q ss_pred             CCCCCCCcceeeeccccceEEEEEEcCCCEEEEee
Q psy17243        137 SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS  171 (392)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  171 (392)
                      ....    .............++|+++++++++-.
T Consensus       172 dg~~----~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGK----LRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCe----EEEEecCcCCCccceECCCCCEEEEcc
Confidence            3211    112212234456789999988876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.56  E-value=0.6  Score=43.76  Aligned_cols=109  Identities=15%  Similarity=0.127  Sum_probs=71.1

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-ccccceEEEEEe--cCCCEEEEEeCCCeEEEEEcC-----
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVL--SDSRRVVTSDKAGVIAVWVAD-----   98 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~-----   98 (392)
                      ....-+.-+.-++..++-+....+.|||...+....+-. ...+.|.++.|.  |+++.+++.+....|.++--.     
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344555555555544444455679999999887544333 357889999985  678999999999999998432     


Q ss_pred             Cc----eeee-----ecc-cceeEEEEeCCCCEEEEecCCCcEEEEeCC
Q psy17243         99 NA----QLLY-----SAL-GPSKCLTVTHNMKYIVSGDGDNSLRIWPTS  137 (392)
Q Consensus        99 ~~----~~~~-----~~~-~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~  137 (392)
                      +.    ..+.     .+. .++....|.++|..++.++  +.+.++|-.
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence            11    1111     122 4677888888887665443  567777653

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=1.2  Score=37.06  Aligned_cols=156  Identities=13%  Similarity=0.073  Sum_probs=99.4

Q ss_pred             ccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         68 QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        68 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      .+-+..+.++  +++...+..+.-++|.|+.+......   +...-..-.+.-.|++..++..+..+.++|+...+....
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence            4455666675  45788888888899999987754332   222233445556788999998777788999986554443


Q ss_pred             ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE---EEEEecCCCceeEEEEecCCCcEEEEecCCCeEEE
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL---AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV  221 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  221 (392)
                      ..........-..++.+  |++-+.+..|+-+.+-|+.+...   +.... ....+.++..+ ++..+++.  .+--+.+
T Consensus       164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vs-dnr~y~vv--y~egvli  237 (370)
T COG5276         164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVS-DNRAYLVV--YDEGVLI  237 (370)
T ss_pred             eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEec-CCeeEEEE--cccceEE
Confidence            33332333333566665  77888888999999999976542   22222 22367777766 44444443  3445777


Q ss_pred             EECCCCceee
Q psy17243        222 WDMETGGEEH  231 (392)
Q Consensus       222 wd~~~~~~~~  231 (392)
                      -|..+.+...
T Consensus       238 vd~s~~ssp~  247 (370)
T COG5276         238 VDVSGPSSPT  247 (370)
T ss_pred             EecCCCCCce
Confidence            8877766443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.49  E-value=1.3  Score=37.17  Aligned_cols=208  Identities=15%  Similarity=0.191  Sum_probs=119.8

Q ss_pred             CeeEEEecCCCCeEEEEeCCCeEEEEeCC------CC-ceeEEecc-----cccceEEEEEecCCC------------EE
Q psy17243         28 TVSCVAISPNSIFAVSGSEDNTAKVWGLT------LG-SVVSTFKS-----HQSTILAVAVLSDSR------------RV   83 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~dg~v~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l   83 (392)
                      .-+.|+++|.+.+-++...-+...+||..      .. .++-.+..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            34789999998877777777899999986      12 22333331     223567777764322            36


Q ss_pred             EEEeCCCeEEEEEcCCce-------eeee--cccce-eEEEEeC--CCCEEEEec-CCCcEEEEeCCCCCCCCcceee--
Q psy17243         84 VTSDKAGVIAVWVADNAQ-------LLYS--ALGPS-KCLTVTH--NMKYIVSGD-GDNSLRIWPTSPQTHKDDERFT--  148 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~~~~-------~~~~--~~~~~-~~~~~~~--~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~--  148 (392)
                      +.++++|+|.-|...-..       .+..  ..+.+ +.+++..  .+.+|+.+. ..++|.+||-.-......-.+.  
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            788999999999753221       1111  11222 3455543  355666554 5799999986532211000000  


Q ss_pred             --ecc-----------ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec--CCCceeEEEEec-----CCCc
Q psy17243        149 --VSH-----------SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG--HTDHVSCVAVAV-----TNKS  208 (392)
Q Consensus       149 --~~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~-----~~~~  208 (392)
                        ...           .-.|+-..-.+++..=+.|..-|.|-+||+ .++.++++..  .-.....|+..|     ..+.
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence              000           001111111122222333444578999996 4777777632  223345666654     3477


Q ss_pred             EEEEecCCCeEEEEECCCCceeeeeccc
Q psy17243        209 LVVSGSKDSNLIVWDMETGGEEHFLAGH  236 (392)
Q Consensus       209 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~  236 (392)
                      +|+----||+|..||..+++.+..+...
T Consensus       263 lLVGNFGDG~InaFD~~sG~~~g~L~~~  290 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGAQLGQLLDP  290 (336)
T ss_pred             eEEeecCCceeEEecCCCCceeeeecCC
Confidence            7887777999999999999988777653

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2280|consensus

Probab=95.26  E-value=2.8  Score=39.67  Aligned_cols=200  Identities=12%  Similarity=0.107  Sum_probs=100.3

Q ss_pred             CCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeee------ecccceeEEEEeCCCC
Q psy17243         47 DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY------SALGPSKCLTVTHNMK  120 (392)
Q Consensus        47 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~  120 (392)
                      --.|+||+. +|+.+..+.-....+-.+.|+.+ ..|++...+|++.+|++.....-.      .....+....+..+| 
T Consensus        63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-  139 (829)
T KOG2280|consen   63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-  139 (829)
T ss_pred             ceeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence            345888884 56776666545558889999855 577888899999999986433222      111123333333344 


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCC---EEEEee-CCCcEEEEEcCCCe-EEEEEecCCC
Q psy17243        121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQ---YLITGS-RDMSLKVWQVVGGK-LAQVLVGHTD  195 (392)
Q Consensus       121 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~-~dg~i~i~d~~~~~-~~~~~~~~~~  195 (392)
                       +++-..+|.+.+-+-..........-......+-.|-...+++.   .++-.. ..+ ..++...... ....+..-..
T Consensus       140 -Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~  217 (829)
T KOG2280|consen  140 -VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNS  217 (829)
T ss_pred             -eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCc
Confidence             33334445554443221111111100001111112322222221   111111 011 1122221111 1122222235


Q ss_pred             ceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec--ccccceeEEEEcCCCeEEE
Q psy17243        196 HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA--GHLGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       196 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~dg~~~~  253 (392)
                      .+..+..+ ++..+|+--...|.|.+-+.+..+....+.  .|. +-..|+|..+..+++
T Consensus       218 ~~~ki~VS-~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~WcgndaVvl  275 (829)
T KOG2280|consen  218 SVVKISVS-PNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGNDAVVL  275 (829)
T ss_pred             eEEEEEEc-CCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCCceEE
Confidence            66778888 678888888899999999888776665554  232 223677766554433

>KOG2377|consensus

Probab=95.23  E-value=0.56  Score=41.31  Aligned_cols=125  Identities=8%  Similarity=0.058  Sum_probs=79.0

Q ss_pred             CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEE----EEEecCCCceeEEEEe
Q psy17243        128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA----QVLVGHTDHVSCVAVA  203 (392)
Q Consensus       128 d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~  203 (392)
                      .|.+.=|-...........+.....++|.++.|++|.+.|++--.+..|.+++....+..    .+.+..+..|....|+
T Consensus        42 SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~  121 (657)
T KOG2377|consen   42 SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT  121 (657)
T ss_pred             cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe
Confidence            344444544433333344444456779999999999999999999999999997433322    2223344568888998


Q ss_pred             cCCCcEEEEecCCCeEEEEECCC-CceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        204 VTNKSLVVSGSKDSNLIVWDMET-GGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       204 ~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                       .+..+ +--+ +.-+-+|.... .+.++..+.|...|+=..|.++-++++-+
T Consensus       122 -~s~e~-A~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  122 -SSTEI-AFIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             -cCeeE-EEEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence             44333 3333 33466665443 33455566677788888888877765543

>PHA02790 Kelch-like protein; Provisional

Probab=95.22  E-value=2.5  Score=39.11  Aligned_cols=143  Identities=11%  Similarity=0.097  Sum_probs=69.5

Q ss_pred             CCCeEEEEeCC--CeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCC---eEEEEEcCCceeeeeccc--c
Q psy17243         37 NSIFAVSGSED--NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG---VIAVWVADNAQLLYSALG--P  109 (392)
Q Consensus        37 ~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~--~  109 (392)
                      ++...+.|+.+  ..+..||..+++-...-.-...........-+++..+.|+.++   .+..||.++.+-......  +
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~  397 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP  397 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence            56666777754  3578888766543221111111111112223566777777553   467888876644332111  1


Q ss_pred             e-eEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC-----CcEEEEEcCC
Q psy17243        110 S-KCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-----MSLKVWQVVG  183 (392)
Q Consensus       110 ~-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  183 (392)
                      . .......++...+.|   |.+.+||.++.+........  ....-.+++. -+++..+.|+.+     ..+..||..+
T Consensus       398 r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~--~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        398 HYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPI--YPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             cccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCC--CCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence            1 112223455555665   45778988765443222111  1111112222 256777777654     2455666655


Q ss_pred             Ce
Q psy17243        184 GK  185 (392)
Q Consensus       184 ~~  185 (392)
                      .+
T Consensus       472 ~~  473 (480)
T PHA02790        472 YS  473 (480)
T ss_pred             Ce
Confidence            43

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.06  E-value=0.16  Score=28.37  Aligned_cols=32  Identities=13%  Similarity=0.241  Sum_probs=27.3

Q ss_pred             CceeEEEEecCCC--cEEEEecCCCeEEEEECCC
Q psy17243        195 DHVSCVAVAVTNK--SLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       195 ~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~  226 (392)
                      +.+.++.|+|...  .+|+-+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3578999997666  7888888899999999995

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.88  E-value=3.3  Score=39.52  Aligned_cols=107  Identities=10%  Similarity=0.098  Sum_probs=71.4

Q ss_pred             CCCEEEEecCCCcEEEEeCCC-------C----C-----CCCcceeeeccccceEEEEEE--cCCCEEEEeeCCCcEEEE
Q psy17243        118 NMKYIVSGDGDNSLRIWPTSP-------Q----T-----HKDDERFTVSHSEEITCFTVT--WDSQYLITGSRDMSLKVW  179 (392)
Q Consensus       118 ~~~~l~~~~~d~~i~~~d~~~-------~----~-----~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~  179 (392)
                      ....|+++..||.|.+|..+.       .    .     ......+.......+..++++  ...++||+++....|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            456789999999999996521       0    0     001112233345678899998  778899999988888888


Q ss_pred             EcCCC--eEEE-EEecCCCceeEEEEecCC----C-cEEEEecCCCeEEEEEC
Q psy17243        180 QVVGG--KLAQ-VLVGHTDHVSCVAVAVTN----K-SLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       180 d~~~~--~~~~-~~~~~~~~v~~~~~~~~~----~-~~l~~~~~dg~i~iwd~  224 (392)
                      -....  +... .-..+...|.+|+|.+.+    + ..+++++-.|.+.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            66442  1111 111256678899998543    2 27888888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.78  E-value=0.96  Score=40.55  Aligned_cols=140  Identities=12%  Similarity=0.110  Sum_probs=88.0

Q ss_pred             CCCeEE-EEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC-------EEEEEeCCCeEEEEEcCC-ceee--ee
Q psy17243         37 NSIFAV-SGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR-------RVVTSDKAGVIAVWVADN-AQLL--YS  105 (392)
Q Consensus        37 ~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~-~~~~--~~  105 (392)
                      +..+|+ .|.....++-.|++.|+.+.+...|...  -+.|.|..+       .-++|-.+..|.-.|.+- +..+  ..
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            444444 4556677888899999999999877665  566776432       234444455555555442 2222  12


Q ss_pred             cccceeE----EEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEc
Q psy17243        106 ALGPSKC----LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV  181 (392)
Q Consensus       106 ~~~~~~~----~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  181 (392)
                      .....+-    ........++++++..|-|++||--   .........+....|..+..+.+|+++++.|. ..+.+-|+
T Consensus       556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi---g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI---GKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             ehhccccccccccccccCceEEEecCCCceeeehhh---cchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence            2222221    1222345689999999999999864   22222333456778899999999999888874 46777776


Q ss_pred             C
Q psy17243        182 V  182 (392)
Q Consensus       182 ~  182 (392)
                      +
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            4

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.76  E-value=0.2  Score=28.04  Aligned_cols=31  Identities=13%  Similarity=0.229  Sum_probs=25.7

Q ss_pred             cCeeEEEecCCC---CeEEEEeCCCeEEEEeCCC
Q psy17243         27 NTVSCVAISPNS---IFAVSGSEDNTAKVWGLTL   57 (392)
Q Consensus        27 ~~v~~~~~~~~~---~~l~~~~~dg~v~iwd~~~   57 (392)
                      +.|.+++|+|+.   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999843   5888887889999999985

It contains a characteristic DLL sequence motif.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.58  E-value=2.6  Score=37.40  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=54.5

Q ss_pred             ccceEEEEEEcCCCEEEEeeCCCcEEEE-EcCC-----Ce--EE-EEEec----CCCceeEEEEecCCCcEEEEecCC--
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDMSLKVW-QVVG-----GK--LA-QVLVG----HTDHVSCVAVAVTNKSLVVSGSKD--  216 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~-d~~~-----~~--~~-~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d--  216 (392)
                      ......+++.+++  |++++.. .|..| |...     ++  .+ ..+..    +......++|. +++.+.++-+..  
T Consensus        71 l~~p~Gi~~~~~G--lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g-pDG~LYv~~G~~~~  146 (367)
T TIGR02604        71 LSMVTGLAVAVGG--VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG-PDGWLYFNHGNTLA  146 (367)
T ss_pred             CCCccceeEecCC--EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC-CCCCEEEecccCCC
Confidence            3455788888888  4444444 35444 4321     12  11 12222    12346788998 455555544311  


Q ss_pred             -----------------CeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        217 -----------------SNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       217 -----------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                                       |.|.-++...++. ..+..-......++|+++|.+++++..
T Consensus       147 ~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       147 SKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             ceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccC
Confidence                             4455555554433 222222234568999999999888653

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.44  E-value=2.2  Score=40.24  Aligned_cols=108  Identities=19%  Similarity=0.213  Sum_probs=68.7

Q ss_pred             EEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEE--cCCCEEEEeeCCCcEEEEEcC-----C--
Q psy17243        113 LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVT--WDSQYLITGSRDMSLKVWQVV-----G--  183 (392)
Q Consensus       113 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~-----~--  183 (392)
                      +.-+.-++..++-.....+.|||.+........  .......|..+.|.  |+++.+++.+....|.+|.-.     +  
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~--~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE--SFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEee--eecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence            334444444455555678999999755422111  12457889999986  578888888888899998642     1  


Q ss_pred             --CeEEEEE--ecCC-CceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        184 --GKLAQVL--VGHT-DHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       184 --~~~~~~~--~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                        ..+++.+  ..|+ .+|....|. .++.+++.+  ++.+.|+|-.
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl-~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWL-KDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEe-cCCeEEEEe--CCEEEEECCC
Confidence              1233332  3344 578899999 677666544  5678888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.34  E-value=3.6  Score=36.59  Aligned_cols=214  Identities=17%  Similarity=0.097  Sum_probs=111.0

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeEEeccc--ccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccce-e--
Q psy17243         37 NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH--QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS-K--  111 (392)
Q Consensus        37 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~--  111 (392)
                      ++ .+..+..+|.|.-.|.++++.+-....-  ...+..-.+..+|+ ++.++.++.++.+|..+++.+....... .  
T Consensus        68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~  145 (370)
T COG1520          68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY  145 (370)
T ss_pred             CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence            44 4555578888888999888865433322  12333333333564 8888889999999998888876655444 1  


Q ss_pred             -EEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC--CCcEEEEEcCCCeEEE
Q psy17243        112 -CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR--DMSLKVWQVVGGKLAQ  188 (392)
Q Consensus       112 -~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~  188 (392)
                       .-.+- ....++.++.++.+...|..++...-...........+..--.. ....++.+..  ++.+.-+|..+++...
T Consensus       146 ~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w  223 (370)
T COG1520         146 ASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKW  223 (370)
T ss_pred             ecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEee
Confidence             11111 22233444456666666665443321111100000000000001 2234555554  5677788888887665


Q ss_pred             EEecCC----Cce-eEEEEec----CCCcEEEEecCCCeEEEEECCCCceeeeeccc----ccceeEEEE-cCCCeEEEE
Q psy17243        189 VLVGHT----DHV-SCVAVAV----TNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH----LGCVTCVKL-AGDGTVAMS  254 (392)
Q Consensus       189 ~~~~~~----~~v-~~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~-~~dg~~~~~  254 (392)
                      ..+.+.    ..+ ..-.+..    .++ -+..++.++.+.-.|..+++.+..+...    ..++..... ..||+..+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~  302 (370)
T COG1520         224 SQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIG  302 (370)
T ss_pred             eeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEE
Confidence            532111    001 0001100    112 2355667888999999999988877653    222222222 247777666


Q ss_pred             c
Q psy17243        255 D  255 (392)
Q Consensus       255 ~  255 (392)
                      .
T Consensus       303 ~  303 (370)
T COG1520         303 F  303 (370)
T ss_pred             E
Confidence            4

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.94  E-value=0.81  Score=40.77  Aligned_cols=50  Identities=14%  Similarity=0.161  Sum_probs=41.4

Q ss_pred             eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccccc
Q psy17243         20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQS   69 (392)
Q Consensus        20 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~   69 (392)
                      ..+......+.+++.+|++++.|+...-|.|.++|+.++..++.+++..+
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            34555667899999999999888887779999999999998888876554

>PRK10115 protease 2; Provisional

Probab=93.91  E-value=6.7  Score=38.15  Aligned_cols=220  Identities=9%  Similarity=0.018  Sum_probs=108.4

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC------CeEEEEeCCCC--ceeEEecccccceE-
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED------NTAKVWGLTLG--SVVSTFKSHQSTIL-   72 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~--~~~~~~~~~~~~v~-   72 (392)
                      |+....|++.|+.+++.+...-....  ..++|.+|++.|+....+      ..|..+++.++  +....+........ 
T Consensus       149 G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~  226 (686)
T PRK10115        149 SRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYV  226 (686)
T ss_pred             CcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEE
Confidence            55666788999988764433221222  569999998866655432      36888888887  33333443333333 


Q ss_pred             EEEEecCCCEEEEEeC---CCeEEEEEcC--Cce--eeeecccceeEEEEeCCCCEEEEecC----CCcEEEEeCCCCCC
Q psy17243         73 AVAVLSDSRRVVTSDK---AGVIAVWVAD--NAQ--LLYSALGPSKCLTVTHNMKYIVSGDG----DNSLRIWPTSPQTH  141 (392)
Q Consensus        73 ~~~~~~~~~~l~~~~~---d~~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~  141 (392)
                      ....+.++++++..+.   ++.+.+++..  ++.  .+.........-..+.. ..++.-+.    ...|...++..   
T Consensus       227 ~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ly~~tn~~~~~~~l~~~~~~~---  302 (686)
T PRK10115        227 SLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQ-HRFYLRSNRHGKNFGLYRTRVRD---  302 (686)
T ss_pred             EEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCC-CEEEEEEcCCCCCceEEEecCCC---
Confidence            3333447777665543   3568888842  232  22222222221112223 33333332    22343334431   


Q ss_pred             CCcceeeecc--ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC-CeEEEEEe-cCCCceeEEEEe--cCCCcEEEEec-
Q psy17243        142 KDDERFTVSH--SEEITCFTVTWDSQYLITGSRDMSLKVWQVVG-GKLAQVLV-GHTDHVSCVAVA--VTNKSLVVSGS-  214 (392)
Q Consensus       142 ~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~-  214 (392)
                      .........+  ...+..+.+. .+.++++...+|.-+++-+.. +..+..+. .....+..+.++  +..+.++++.+ 
T Consensus       303 ~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss  381 (686)
T PRK10115        303 EQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSS  381 (686)
T ss_pred             cccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEec
Confidence            1122222233  2467777776 334555666666655544432 22333333 222223333333  22244554443 


Q ss_pred             --CCCeEEEEECCCCc
Q psy17243        215 --KDSNLIVWDMETGG  228 (392)
Q Consensus       215 --~dg~i~iwd~~~~~  228 (392)
                        .-+.+..+|+.+++
T Consensus       382 ~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        382 MTTPDTLFELDMDTGE  397 (686)
T ss_pred             CCCCCEEEEEECCCCc
Confidence              34678888988765

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.80  E-value=0.63  Score=37.65  Aligned_cols=65  Identities=20%  Similarity=0.254  Sum_probs=43.6

Q ss_pred             ecCCCCeEEEEeCCCeEEEEeCCCCceeEEe-------c-------ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q psy17243         34 ISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF-------K-------SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADN   99 (392)
Q Consensus        34 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   99 (392)
                      +..++.+|++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|..+.|+.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3456778999999999999999988764322       1       2335567777776666555543 45666666543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900|consensus

Probab=93.65  E-value=1  Score=45.12  Aligned_cols=157  Identities=15%  Similarity=0.185  Sum_probs=94.7

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEE--------ecCCCEEEEEeCCCeEEEEE
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAV--------LSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~d~~i~iwd   96 (392)
                      |...-..|-+-|.=.+... +-|+.+.+|+.+++.....+.+-...|..+..        .|.=+++++...--.|.++-
T Consensus        77 ~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg  155 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG  155 (1311)
T ss_pred             CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence            4444445556664333332 35889999999998888888777777766654        23334555555555566663


Q ss_pred             cCCc----ee--------eeecccceeEEEEeCCCCEEEEecCCCcEEE--EeCCCC---C---------------CCCc
Q psy17243         97 ADNA----QL--------LYSALGPSKCLTVTHNMKYIVSGDGDNSLRI--WPTSPQ---T---------------HKDD  144 (392)
Q Consensus        97 ~~~~----~~--------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~--~d~~~~---~---------------~~~~  144 (392)
                      +.-.    ..        +..-...+.|+....+|+.+++|-.+ .|+=  |....+   +               ....
T Consensus       156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~  234 (1311)
T KOG1900|consen  156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL  234 (1311)
T ss_pred             EEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence            3211    11        11112356788877788777766544 4332  111110   0               0001


Q ss_pred             ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                      ......+..+|..+.+....+.+++-++.|+|.+||+..
T Consensus       235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            111124567999999998888999999999999999976

>KOG1900|consensus

Probab=93.56  E-value=1.2  Score=44.69  Aligned_cols=136  Identities=10%  Similarity=0.172  Sum_probs=80.7

Q ss_pred             eCCCeEEEEEcCCceeeeeccc---ceeEE--------EEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeee------
Q psy17243         87 DKAGVIAVWVADNAQLLYSALG---PSKCL--------TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV------  149 (392)
Q Consensus        87 ~~d~~i~iwd~~~~~~~~~~~~---~~~~~--------~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------  149 (392)
                      +.|+.+.+|+.+++.....+.+   .+..+        .|.|.=+++++...--.|.++-+.............      
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            4588899999998655444333   22211        133333455555555556665443222221111111      


Q ss_pred             ccccceEEEEEEcCCCEEEEeeCCCcEEEEEc----CCC---e-E----------------EEEEe-cCCCceeEEEEec
Q psy17243        150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQV----VGG---K-L----------------AQVLV-GHTDHVSCVAVAV  204 (392)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~  204 (392)
                      .....|+|+....+|+.+++|- ||.  +|.+    ..+   + +                +-.+. .+.++|..+... 
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID-  251 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID-  251 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec-
Confidence            2356788888777887777665 554  4443    111   1 1                11122 467799999998 


Q ss_pred             CCCcEEEEecCCCeEEEEECCC
Q psy17243        205 TNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       205 ~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      ....++.+-+..|+|.+||+..
T Consensus       252 ~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  252 NSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cccceeeeeccCceEEEEEccC
Confidence            7788899999999999999976

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.50  E-value=5.2  Score=35.56  Aligned_cols=188  Identities=14%  Similarity=0.084  Sum_probs=102.9

Q ss_pred             ccCCeEEEEECCCccceeeeccC--CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccc-cceEEEEEecC
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGH--LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQ-STILAVAVLSD   79 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~   79 (392)
                      ..+|.|.-.|.++++.+.....-  ...+..-.+..+|+ |+.++.++.+..+|..+|+.+-...... ..+..-....+
T Consensus        75 ~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~  153 (370)
T COG1520          75 TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGD  153 (370)
T ss_pred             cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcC
Confidence            46777778888888766433321  12333333333665 7788889999999988999887777554 11222222223


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeeccccee---EEEEe--CCCCEEEEecC--CCcEEEEeCCCCCCCCcceeee--c
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYSALGPSK---CLTVT--HNMKYIVSGDG--DNSLRIWPTSPQTHKDDERFTV--S  150 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~--~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~--~  150 (392)
                      + .+...+.++.+...|..+++.+........   .....  .....++.+..  ++.+.-+|...+...-......  .
T Consensus       154 ~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~  232 (370)
T COG1520         154 G-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIG  232 (370)
T ss_pred             c-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccC
Confidence            3 444444789999999998888665433221   11111  12334444444  5556666665443332211111  1


Q ss_pred             ccc-----ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecC
Q psy17243        151 HSE-----EITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH  193 (392)
Q Consensus       151 ~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  193 (392)
                      ...     .+..-...-++ -++.++.++.+...|..+++.+-.+...
T Consensus       233 ~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         233 RTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             cccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            000     00000111122 3466677888999999999988877653

>KOG2377|consensus

Probab=93.46  E-value=3.5  Score=36.63  Aligned_cols=116  Identities=11%  Similarity=0.123  Sum_probs=73.7

Q ss_pred             ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCccee-eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC-
Q psy17243        107 LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERF-TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG-  184 (392)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-  184 (392)
                      .+++.++.|++|.+.+++--.+..|.+++....+....... .......|..+.|+.+ .-++.-...| +-+|.+... 
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek  143 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK  143 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence            46889999999999999999999999998854333322211 1123445888889865 4455554443 667765433 


Q ss_pred             eEEEEEecCCCceeEEEEecCCCcEEEEec-CCCeEEEEEC
Q psy17243        185 KLAQVLVGHTDHVSCVAVAVTNKSLVVSGS-KDSNLIVWDM  224 (392)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~  224 (392)
                      +.++..+.|+..|+-..|.+...-.|++.+ ..+.+.=+.+
T Consensus       144 rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~  184 (657)
T KOG2377|consen  144 RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF  184 (657)
T ss_pred             hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence            344555667888888888855444444444 3333333333

>KOG2247|consensus

Probab=93.34  E-value=0.012  Score=51.62  Aligned_cols=139  Identities=12%  Similarity=0.135  Sum_probs=93.1

Q ss_pred             EEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEE-EEeeCCCcEEEEEcCCCeEEEEE
Q psy17243        112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYL-ITGSRDMSLKVWQVVGGKLAQVL  190 (392)
Q Consensus       112 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~  190 (392)
                      ...|-+.+.-++.++.+..+..||-...     ........+....++|..++..+ +.+-..+.+.+||+.+...-..-
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq-----~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQ-----VILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcc-----eecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            4456677777888888888988986421     12222334555667777666544 44556789999999764321111


Q ss_pred             ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        191 VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       191 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .+-...-.-+.|+ +....++.+...|.+.|++..+.+.+...-.|...++++++.+.+..+..+.
T Consensus       114 ~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dc  178 (615)
T KOG2247|consen  114 SGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDC  178 (615)
T ss_pred             ccCcchHHHHhhc-cCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCc
Confidence            1111111226788 6667777788899999999888776666655889999999999888887763

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.04  E-value=3.8  Score=32.63  Aligned_cols=163  Identities=14%  Similarity=0.178  Sum_probs=84.4

Q ss_pred             eEEEEeCCCeEEEEeCC--CCceeEEecccccceEEEEEecCCCEEEEEeCCC------eEEEE-EcCCceeeeecccce
Q psy17243         40 FAVSGSEDNTAKVWGLT--LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG------VIAVW-VADNAQLLYSALGPS  110 (392)
Q Consensus        40 ~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iw-d~~~~~~~~~~~~~~  110 (392)
                      .|+.+...+.|.+|++.  ..+...++.. -+.|..+.++..|++|++--.+.      .+++| +.+..   .....++
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~---~~~~~~v  105 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ---KEENSPV  105 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh---cccCCcE
Confidence            44443556789999988  3455667763 58899999999999999864332      45554 22211   0011111


Q ss_pred             eEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE-EE-
Q psy17243        111 KCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL-AQ-  188 (392)
Q Consensus       111 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~-  188 (392)
                      .. .+.  |. -+.++..+..         ..........-..++.+++..|-..-|++|+ ++.+.+|.+..... .. 
T Consensus       106 ~v-Ria--G~-~v~~~~~~~~---------~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~  171 (215)
T PF14761_consen  106 RV-RIA--GH-RVTPSFNESS---------KDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEK  171 (215)
T ss_pred             EE-EEc--cc-ccccCCCCcc---------ccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEeccc
Confidence            10 000  00 0000000000         1011112223456778888888655566666 45789998764432 11 


Q ss_pred             ----EEe----cC--CCceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        189 ----VLV----GH--TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       189 ----~~~----~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                          .+.    .|  .-....+++.   +.++|..+ +-.+++..+
T Consensus       172 ~~~lDFe~~l~~~~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  172 FSFLDFERSLIDHIDNFKPTQVAIC---EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             ccEEechhhhhheecCceEEEEEEE---eeEEEEec-CCEEEEEEE
Confidence                110    11  1224556665   56666654 556776654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.90  E-value=3.8  Score=32.33  Aligned_cols=94  Identities=10%  Similarity=0.022  Sum_probs=56.8

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeE-EEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEE
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVV   84 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   84 (392)
                      ..|++||+.+++.+..-.-....+..=-...-+.++ +-.-.+|.-.++|.++.+++..+. .++.=..++.  +++.|+
T Consensus        68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~Li  144 (262)
T COG3823          68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DDKNLI  144 (262)
T ss_pred             ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceeeec--CCcceE
Confidence            468999999888776543221222221111222322 233467888899999888887776 3444444443  666687


Q ss_pred             EEeCCCeEEEEEcCCcee
Q psy17243         85 TSDKAGVIAVWVADNAQL  102 (392)
Q Consensus        85 ~~~~d~~i~iwd~~~~~~  102 (392)
                      .++...+++.-|.++...
T Consensus       145 msdGsatL~frdP~tfa~  162 (262)
T COG3823         145 MSDGSATLQFRDPKTFAE  162 (262)
T ss_pred             eeCCceEEEecCHHHhhh
Confidence            777777777777765433

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.59  E-value=0.48  Score=41.66  Aligned_cols=166  Identities=11%  Similarity=0.092  Sum_probs=98.8

Q ss_pred             eeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEE-e-ccccc----ceE-EEEEecCCCEEEEEeCCCe
Q psy17243         19 QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST-F-KSHQS----TIL-AVAVLSDSRRVVTSDKAGV   91 (392)
Q Consensus        19 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~-~~~~~----~v~-~~~~~~~~~~l~~~~~d~~   91 (392)
                      +..+..-...|..+-..|+|+.|..-+. .++.++++.+.....+ + ....+    .|+ ++.....+..+++++.||.
T Consensus       213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~  291 (733)
T COG4590         213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL  291 (733)
T ss_pred             hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence            3334445677888899999998877654 6788998876533211 1 11111    122 2222345677889999999


Q ss_pred             EEEE-EcCCcee-----eeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc
Q psy17243         92 IAVW-VADNAQL-----LYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW  162 (392)
Q Consensus        92 i~iw-d~~~~~~-----~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (392)
                      |.-| |......     ++.++   .++..+.-..+.+-+++-+.+|++.++.....+    ......-...+.-++++|
T Consensus       292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~----~lL~~~~~~~~~~~~~Sp  367 (733)
T COG4590         292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK----LLLFERAYQAPQLVAMSP  367 (733)
T ss_pred             eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc----ceehhhhhcCcceeeeCc
Confidence            9888 4443221     11111   123333333455667888888888887653211    111112233566788999


Q ss_pred             CCCEEEEeeCCCcEEEEEcCCCeEEEEE
Q psy17243        163 DSQYLITGSRDMSLKVWQVVGGKLAQVL  190 (392)
Q Consensus       163 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~  190 (392)
                      ++.++++-. .|.++++.+++..+...+
T Consensus       368 ~~~~Ll~e~-~gki~~~~l~Nr~Peisw  394 (733)
T COG4590         368 NQAYLLSED-QGKIRLAQLENRNPEISW  394 (733)
T ss_pred             ccchheeec-CCceEEEEecCCCCCccH
Confidence            999988764 567999998876654443

>KOG2247|consensus

Probab=92.56  E-value=0.014  Score=51.13  Aligned_cols=148  Identities=9%  Similarity=0.123  Sum_probs=99.7

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEEcCCceeee-ecccceeEEEEeCCCCEEEE-ecCCCcEEEEeCCCCCCCCcceee
Q psy17243         71 ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY-SALGPSKCLTVTHNMKYIVS-GDGDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        71 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      .....|.+++..++.++.+..+..||-.....+. ...+..-.++|..++..+++ +-..+.+.+||+.+....+ +.. 
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-LE~-  114 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LES-  114 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-Hhc-
Confidence            3456778888889999999999999865544332 23334456677777766554 5567899999997433221 111 


Q ss_pred             eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEE
Q psy17243        149 VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD  223 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  223 (392)
                       +....-.-+.|++....++.+...|.+.|++..+.+.+...-.|..+++++++.+.  .+.+.++.|..+.+-.
T Consensus       115 -gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE--d~vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  115 -GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE--DYVILCDCDNTLSVTT  186 (615)
T ss_pred             -cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc--ceeeecCcHHHHHHhh
Confidence             22222222678888888899989999999998887766665558889999999843  3455566666554443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.53  E-value=1.5  Score=35.57  Aligned_cols=73  Identities=16%  Similarity=0.096  Sum_probs=41.8

Q ss_pred             EEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcc----eeee-------ccccceEEEEEEcCCCEEEEeeCCCcEEEEE
Q psy17243        112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE----RFTV-------SHSEEITCFTVTWDSQYLITGSRDMSLKVWQ  180 (392)
Q Consensus       112 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~----~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  180 (392)
                      .+.+..+++++++.+.+|.+++||+...+.....    ....       .....|..+.++.+|.-+++-+ +|..+.|+
T Consensus        15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            3334455666666667777777776543321111    0000       2446677778887777666554 57788888


Q ss_pred             cCCCe
Q psy17243        181 VVGGK  185 (392)
Q Consensus       181 ~~~~~  185 (392)
                      ..-+.
T Consensus        94 ~~L~~   98 (219)
T PF07569_consen   94 PDLGC   98 (219)
T ss_pred             cccce
Confidence            65443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.47  E-value=7  Score=37.97  Aligned_cols=76  Identities=14%  Similarity=0.092  Sum_probs=52.9

Q ss_pred             ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC----------CeE--E-EEE--------ecCCCceeEEEEecC--CCc
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVG----------GKL--A-QVL--------VGHTDHVSCVAVAVT--NKS  208 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~--~-~~~--------~~~~~~v~~~~~~~~--~~~  208 (392)
                      ...|..+.++|+|.+|+..+..| |.|-.+..          ++.  . +.+        ..+...|..+.|+|.  ++.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            35788999999999999888765 55554421          111  1 111        123457889999975  367


Q ss_pred             EEEEecCCCeEEEEECCCCc
Q psy17243        209 LVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       209 ~l~~~~~dg~i~iwd~~~~~  228 (392)
                      .|+.-..|+++|+||+...+
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            77788889999999997644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.40  E-value=4.7  Score=32.12  Aligned_cols=103  Identities=11%  Similarity=0.203  Sum_probs=64.2

Q ss_pred             CEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCC------cEEEE---EcC--CCeEEE
Q psy17243        120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM------SLKVW---QVV--GGKLAQ  188 (392)
Q Consensus       120 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~---d~~--~~~~~~  188 (392)
                      ..|+.+.....|.+|++...  ..........-+.|..+.++..|++|++--.+.      .+++|   ...  ..+++.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~--~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQE--ECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccC--CCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            34444467788999999732  222333334568899999999999999875432      45554   221  112221


Q ss_pred             -EEec---------------------CCCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        189 -VLVG---------------------HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       189 -~~~~---------------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                       .+.|                     -..++.+++..|-.|++++..  ++++.+|.+..
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~  164 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKY  164 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEE
Confidence             1112                     234567888887888887743  67899997753

>KOG4460|consensus

Probab=91.80  E-value=2.1  Score=38.60  Aligned_cols=82  Identities=9%  Similarity=-0.057  Sum_probs=53.6

Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEc---------CCCeEEEEE----------e-cCCCceeEEEEecCC--CcEE
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQV---------VGGKLAQVL----------V-GHTDHVSCVAVAVTN--KSLV  210 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~----------~-~~~~~v~~~~~~~~~--~~~l  210 (392)
                      -.|..+..++.|..++..+.+|.+.++=.         ++++.....          . ...-.+..++|+|..  +..|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            45677888889999888888886554421         233322111          1 111235567899766  6677


Q ss_pred             EEecCCCeEEEEECCCCceeeeec
Q psy17243        211 VSGSKDSNLIVWDMETGGEEHFLA  234 (392)
Q Consensus       211 ~~~~~dg~i~iwd~~~~~~~~~~~  234 (392)
                      ..-+.|..||+||+.....+....
T Consensus       184 ~iL~sdnviRiy~lS~~telylqp  207 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTELYLQP  207 (741)
T ss_pred             EEEecCcEEEEEecCCcchhhccC
Confidence            777889999999998877665443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.79  E-value=4.3  Score=36.68  Aligned_cols=144  Identities=13%  Similarity=0.153  Sum_probs=83.6

Q ss_pred             CCCEEE-EEeCCCeEEEEEcCCceeeeecccce-eEEEEeCCC-------CEEEEecCCCcEEEEeCCCCCCCCcceee-
Q psy17243         79 DSRRVV-TSDKAGVIAVWVADNAQLLYSALGPS-KCLTVTHNM-------KYIVSGDGDNSLRIWPTSPQTHKDDERFT-  148 (392)
Q Consensus        79 ~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~-------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-  148 (392)
                      +...|+ .+.....++-.|++.|+.+.+....- ..+.+.|..       ..-++|-.+..|.-.|.+-...+...... 
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK  557 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK  557 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence            344433 34455667777888888876544321 245566632       23455666666766676633211111100 


Q ss_pred             -eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        149 -VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       149 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                       ........+..-. ...++++++..|.|++||--.-+....+++....|..+... .++.++++.+ ...+.+-|++
T Consensus       558 dY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvt-a~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         558 DYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVT-ANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             hccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEee-cCCcEEEEee-cceEEEEecc
Confidence             0111222232222 34599999999999999965444445567777888888888 5666666554 5577777765

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.60  E-value=8.7  Score=33.53  Aligned_cols=227  Identities=15%  Similarity=0.112  Sum_probs=116.1

Q ss_pred             CeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce---eEEe----cccccceEEEEEecC---CCEEEEEeCC--------
Q psy17243         28 TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV---VSTF----KSHQSTILAVAVLSD---SRRVVTSDKA--------   89 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~d--------   89 (392)
                      .-++|+|.|+++++++ ...|.|.+++ ..+..   +..+    .........++++|+   ..+|.+....        
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999876665 5699999999 44543   2222    123456899999995   2344333321        


Q ss_pred             -CeEEEEEcCCc-------eeee-ec------ccceeEEEEeCCCCEEEEecCC-------------CcEEEEeCCCCC-
Q psy17243         90 -GVIAVWVADNA-------QLLY-SA------LGPSKCLTVTHNMKYIVSGDGD-------------NSLRIWPTSPQT-  140 (392)
Q Consensus        90 -~~i~iwd~~~~-------~~~~-~~------~~~~~~~~~~~~~~~l~~~~~d-------------~~i~~~d~~~~~-  140 (392)
                       ..|.-|.....       +.+. ..      ......+.|.|++.+.++.+..             |.|.-.+....- 
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence             23444544433       1111 11      1233579999999666554432             334444433110 


Q ss_pred             ---------CCCcceeeeccccceEEEEEEcCCCEEEEeeC--CCcEEEEEcCCC-------------------------
Q psy17243        141 ---------HKDDERFTVSHSEEITCFTVTWDSQYLITGSR--DMSLKVWQVVGG-------------------------  184 (392)
Q Consensus       141 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~-------------------------  184 (392)
                               ......+..++ .....++|.|....|+++..  +..=.|.-+..+                         
T Consensus       161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~  239 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC  239 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred             CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence                     00111122222 33467899998334444332  222222222211                         


Q ss_pred             ----eEEEEEecCCCceeEEEEecC------CCcEEEEecCCCeEEEEECCCCceee---e-ecccccceeEEEEcCCCe
Q psy17243        185 ----KLAQVLVGHTDHVSCVAVAVT------NKSLVVSGSKDSNLIVWDMETGGEEH---F-LAGHLGCVTCVKLAGDGT  250 (392)
Q Consensus       185 ----~~~~~~~~~~~~v~~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~---~-~~~~~~~v~~~~~~~dg~  250 (392)
                          .+...+..| ..+..+.|-..      .+.++++.-..+.|....++....+.   . +......+..+++.|||.
T Consensus       240 ~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~  318 (331)
T PF07995_consen  240 PGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA  318 (331)
T ss_dssp             TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred             CCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence                122333333 45556666522      35577777667788888887553322   2 233444899999999999


Q ss_pred             EEEEcCCC
Q psy17243        251 VAMSDLPP  258 (392)
Q Consensus       251 ~~~~~~~~  258 (392)
                      +.+++..+
T Consensus       319 Lyv~~d~~  326 (331)
T PF07995_consen  319 LYVSDDSD  326 (331)
T ss_dssp             EEEEE-TT
T ss_pred             EEEEECCC
Confidence            99987533

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PLN02193 nitrile-specifier protein

Probab=91.50  E-value=11  Score=34.71  Aligned_cols=148  Identities=9%  Similarity=-0.016  Sum_probs=71.1

Q ss_pred             CCCeEEEEeCC-----CeEEEEeCCCCceeEEecc---cccc-eEEEEEecCCCEEEEEeCC-----CeEEEEEcCCcee
Q psy17243         37 NSIFAVSGSED-----NTAKVWGLTLGSVVSTFKS---HQST-ILAVAVLSDSRRVVTSDKA-----GVIAVWVADNAQL  102 (392)
Q Consensus        37 ~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~---~~~~-v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~  102 (392)
                      ++.+.+.|+.+     ..+.+||+.+.+-...-..   .... -.+++ .-+++.++.|+.+     ..+..||+.+.+-
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45566666654     3578888877654321111   0111 12222 2345566666654     3467788877653


Q ss_pred             eeecc------cceeEEEEeCCCCEEEEecCC----CcEEEEeCCCCCCCCcceee-eccccceEEEEEEcCCCEEEEee
Q psy17243        103 LYSAL------GPSKCLTVTHNMKYIVSGDGD----NSLRIWPTSPQTHKDDERFT-VSHSEEITCFTVTWDSQYLITGS  171 (392)
Q Consensus       103 ~~~~~------~~~~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~  171 (392)
                      .....      ..........+++.++.++.+    ..+.+||+.+.......... ........+++ .-++++++.|+
T Consensus       307 ~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG  385 (470)
T PLN02193        307 FHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGG  385 (470)
T ss_pred             EeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECC
Confidence            32111      001111122356666666654    46888998755432221110 01111112222 23566777777


Q ss_pred             CC--------------CcEEEEEcCCCeE
Q psy17243        172 RD--------------MSLKVWQVVGGKL  186 (392)
Q Consensus       172 ~d--------------g~i~i~d~~~~~~  186 (392)
                      ..              ..+.+||+.+.+-
T Consensus       386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W  414 (470)
T PLN02193        386 EIAMDPLAHVGPGQLTDGTFALDTETLQW  414 (470)
T ss_pred             ccCCccccccCccceeccEEEEEcCcCEE
Confidence            43              2467777776643

>PLN02193 nitrile-specifier protein

Probab=91.47  E-value=12  Score=34.68  Aligned_cols=148  Identities=10%  Similarity=-0.014  Sum_probs=69.6

Q ss_pred             CCCeEEEEeCC-------CeEEEEeCCCCceeEEecc---ccc--ceEEEEEecCCCEEEEEeCC-----CeEEEEEcCC
Q psy17243         37 NSIFAVSGSED-------NTAKVWGLTLGSVVSTFKS---HQS--TILAVAVLSDSRRVVTSDKA-----GVIAVWVADN   99 (392)
Q Consensus        37 ~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~~~---~~~--~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~   99 (392)
                      ++.+++.|+.+       ..+.+||+++.+-.. +..   ...  ........-+++..+.|+.+     ..+..+|+.+
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t  253 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT  253 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence            34455666643       247778887654332 111   111  11111112245555666544     3578888887


Q ss_pred             ceeeeecc-----cce-eEEEEeCCCCEEEEecCCC-----cEEEEeCCCCCCCCccee--eeccccceEEEEEEcCCCE
Q psy17243        100 AQLLYSAL-----GPS-KCLTVTHNMKYIVSGDGDN-----SLRIWPTSPQTHKDDERF--TVSHSEEITCFTVTWDSQY  166 (392)
Q Consensus       100 ~~~~~~~~-----~~~-~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~  166 (392)
                      .+-.....     .+. ...+...+++.++.|+.++     .+..||+.+.........  ....... ..++. -++++
T Consensus       254 ~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~gki  331 (470)
T PLN02193        254 NEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQGKV  331 (470)
T ss_pred             CEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECCcE
Confidence            65332111     111 1122223556666666543     467788765432211110  0000111 12222 25667


Q ss_pred             EEEeeCC----CcEEEEEcCCCeEE
Q psy17243        167 LITGSRD----MSLKVWQVVGGKLA  187 (392)
Q Consensus       167 l~~~~~d----g~i~i~d~~~~~~~  187 (392)
                      ++.++.+    ..+.+||+.+.+-.
T Consensus       332 yviGG~~g~~~~dv~~yD~~t~~W~  356 (470)
T PLN02193        332 WVVYGFNGCEVDDVHYYDPVQDKWT  356 (470)
T ss_pred             EEEECCCCCccCceEEEECCCCEEE
Confidence            7766654    46899999887643

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=91.36  E-value=8.6  Score=33.03  Aligned_cols=241  Identities=12%  Similarity=0.059  Sum_probs=113.2

Q ss_pred             CccCCeEEEEECCC--ccceeeeccCCcCeeEEEecCCCCeEEEEe-CCCeEEEEeCCCCce----------------eE
Q psy17243          2 GGMDCLVNVWQMNS--HELQSTMEGHLNTVSCVAISPNSIFAVSGS-EDNTAKVWGLTLGSV----------------VS   62 (392)
Q Consensus         2 g~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~----------------~~   62 (392)
                      |+.+|. .+.+...  .+..+.+  +..+|+++...+..+.|++-+ ....++.+++..-..                ..
T Consensus        19 GTe~Gl-y~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~   95 (302)
T smart00036       19 GTEEGL-YVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLT   95 (302)
T ss_pred             EeCCce-EEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceE
Confidence            455664 4444543  2333333  567899999999777666544 344599999843221                11


Q ss_pred             EecccccceEEEEEecCC-CEEEEEeCCCeEEEEEcCCc----eeeee------c-ccceeEEEEeC--CCCEEEEecCC
Q psy17243         63 TFKSHQSTILAVAVLSDS-RRVVTSDKAGVIAVWVADNA----QLLYS------A-LGPSKCLTVTH--NMKYIVSGDGD  128 (392)
Q Consensus        63 ~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~----~~~~~------~-~~~~~~~~~~~--~~~~l~~~~~d  128 (392)
                      .+ .+............. ..++++.....|.++.....    ..+..      . ..+...+..++  ....+.+|+..
T Consensus        96 ~~-~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~  174 (302)
T smart00036       96 KI-PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDK  174 (302)
T ss_pred             eC-CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcC
Confidence            11 233323333333222 23445555566666544322    11221      0 11222333333  35677777765


Q ss_pred             CcEEEEeCCC--CCCCCc-ce-eeeccc-cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEE--EEEecCCCceeEEE
Q psy17243        129 NSLRIWPTSP--QTHKDD-ER-FTVSHS-EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA--QVLVGHTDHVSCVA  201 (392)
Q Consensus       129 ~~i~~~d~~~--~~~~~~-~~-~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~~~  201 (392)
                      +...++++..  ...... .. ...... .++.... .+++.+|++-. + ...+-|....+..  ..+. -.....+++
T Consensus       175 ~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Llc~~-~-~~v~Vn~~G~~~~r~~~l~-w~~~p~~~~  250 (302)
T smart00036      175 GGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLLCYD-E-FGVFVNLYGKRRSRNPILH-WEFMPESFA  250 (302)
T ss_pred             CCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEEEEC-c-EEEEEeCCCCccccceEEE-cCCcccEEE
Confidence            3344454432  111100 00 000111 3333333 33454554432 3 3444454321211  1222 345566777


Q ss_pred             EecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEE
Q psy17243        202 VAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       202 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                      +.   ..++++-. +..|.|+++.+++.++.+.........+--+.++.+++.
T Consensus       251 ~~---~pyll~~~-~~~ievr~l~~~~l~q~i~~~~~~~~r~L~~~~~~I~~~  299 (302)
T smart00036      251 YH---SPYLLAFH-DNGIEIRSIKTGELLQELADRETRKIRLLGSSDRKILLS  299 (302)
T ss_pred             EE---CCEEEEEc-CCcEEEEECCCCceEEEEecCCCcceEEEecCCCeEEEE
Confidence            76   34555554 556999999999988888642222222222245555443

Unpublished observations.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.09  E-value=8.6  Score=32.50  Aligned_cols=69  Identities=16%  Similarity=0.123  Sum_probs=48.7

Q ss_pred             CeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe------CCCeEEEEEcCCceeee-------ecccceeEEE
Q psy17243         48 NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD------KAGVIAVWVADNAQLLY-------SALGPSKCLT  114 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~-------~~~~~~~~~~  114 (392)
                      ..|++||..+.+-..--.+-.+.|+++.|..+.+.++.|.      ....+..||+.+.....       .+.+++..+.
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence            4599999988776665556678999999996666666663      35678889988775421       2345676666


Q ss_pred             Ee
Q psy17243        115 VT  116 (392)
Q Consensus       115 ~~  116 (392)
                      +.
T Consensus        96 ~~   97 (281)
T PF12768_consen   96 FI   97 (281)
T ss_pred             ee
Confidence            54

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.08  E-value=1.2  Score=41.91  Aligned_cols=74  Identities=24%  Similarity=0.334  Sum_probs=44.7

Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCC---CC-Ccceee-------------------eccccceEEEEEEc----CCCEEEE
Q psy17243        117 HNMKYIVSGDGDNSLRIWPTSPQT---HK-DDERFT-------------------VSHSEEITCFTVTW----DSQYLIT  169 (392)
Q Consensus       117 ~~~~~l~~~~~d~~i~~~d~~~~~---~~-~~~~~~-------------------~~~~~~v~~~~~~~----~~~~l~~  169 (392)
                      ++...++++..||.+.........   .. ......                   .........++++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            477788888899988888765411   00 000000                   01123455566665    6789999


Q ss_pred             eeCCCcEEEEEcCCCeEEEEE
Q psy17243        170 GSRDMSLKVWQVVGGKLAQVL  190 (392)
Q Consensus       170 ~~~dg~i~i~d~~~~~~~~~~  190 (392)
                      .+.|+++++||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.06  E-value=9.1  Score=32.74  Aligned_cols=220  Identities=10%  Similarity=0.017  Sum_probs=99.5

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC-ceeEEe--ccc---ccceEEEEEecCCCEEEEEeCCCeEEEEEcC
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-SVVSTF--KSH---QSTILAVAVLSDSRRVVTSDKAGVIAVWVAD   98 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~--~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   98 (392)
                      -...+..|.|..+..-+++|. .+.|  +...++ +.=...  ...   .-...++.|..+ . ..+++..+ +.+.-.+
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~-g~ivG~~g-~ll~T~D   88 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-E-GWIVGEPG-LLLHTTD   88 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-E-EEEEEETT-EEEEESS
T ss_pred             CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-c-eEEEcCCc-eEEEecC
Confidence            345789999986555556654 4543  333333 221111  111   123567777643 3 33444455 3333344


Q ss_pred             Cceeeee------cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243         99 NAQLLYS------ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus        99 ~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      .++.-..      +.+....+....++..+++ +..|.|+.= .+.+..-.  .........+..+.-++++++++++..
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy~T-~DgG~tW~--~~~~~~~gs~~~~~r~~dG~~vavs~~  164 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIYRT-TDGGKTWQ--AVVSETSGSINDITRSSDGRYVAVSSR  164 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EEEE-SSTTSSEE--EEE-S----EEEEEE-TTS-EEEEETT
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEEEe-CCCCCCee--EcccCCcceeEeEEECCCCcEEEEECc
Confidence            4433222      1222233333334433333 344544322 11111111  112234567888888999999988876


Q ss_pred             CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEEC-CCCceeee----ecccccceeEEEEcC
Q psy17243        173 DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM-ETGGEEHF----LAGHLGCVTCVKLAG  247 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~----~~~~~~~v~~~~~~~  247 (392)
                      .....-||.....-...-+.-...|..+.|. +++.+.+.+ ..|.|++=+. ...+.-..    +....-.+..++|.+
T Consensus       165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~-~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~  242 (302)
T PF14870_consen  165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFS-PDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP  242 (302)
T ss_dssp             SSEEEEE-TT-SS-EEEE--SSS-EEEEEE--TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS
T ss_pred             ccEEEEecCCCccceEEccCccceehhceec-CCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC
Confidence            6666678754322222223346789999999 555554443 7899998872 22222111    111223578999999


Q ss_pred             CCeEEEEcC
Q psy17243        248 DGTVAMSDL  256 (392)
Q Consensus       248 dg~~~~~~~  256 (392)
                      ++.+.+.+.
T Consensus       243 ~~~~wa~gg  251 (302)
T PF14870_consen  243 PNEIWAVGG  251 (302)
T ss_dssp             SS-EEEEES
T ss_pred             CCCEEEEeC
Confidence            888887764

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.70  E-value=5.6  Score=33.59  Aligned_cols=74  Identities=12%  Similarity=0.155  Sum_probs=51.4

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEe------CCCeEEEEeCCCCceeEEecc-----cccceE
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS------EDNTAKVWGLTLGSVVSTFKS-----HQSTIL   72 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~-----~~~~v~   72 (392)
                      .-..|++||..+.+-..--.+-.+.|+.|.|..+.++++.|.      ....+..||+.+.... .+..     -.++|.
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEE
Confidence            345799999987766655555668899999997777777764      3567888998776432 2222     246788


Q ss_pred             EEEEec
Q psy17243         73 AVAVLS   78 (392)
Q Consensus        73 ~~~~~~   78 (392)
                      .+.+..
T Consensus        93 a~~~~~   98 (281)
T PF12768_consen   93 ALTFIS   98 (281)
T ss_pred             EEEeec
Confidence            877743

>PLN02153 epithiospecifier protein

Probab=90.62  E-value=11  Score=33.01  Aligned_cols=149  Identities=7%  Similarity=0.057  Sum_probs=69.1

Q ss_pred             CCCeEEEEeCC-------CeEEEEeCCCCceeEEeccc--cc-ce--EEEEEecCCCEEEEEeCC-----CeEEEEEcCC
Q psy17243         37 NSIFAVSGSED-------NTAKVWGLTLGSVVSTFKSH--QS-TI--LAVAVLSDSRRVVTSDKA-----GVIAVWVADN   99 (392)
Q Consensus        37 ~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~~~~--~~-~v--~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~   99 (392)
                      ++++++.|+.+       ..+.+||+.+.+-...-...  .. ..  .+++.. +++.++.|+.+     ..+.+||+.+
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-GTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-CCEEEEECCCCCCCccCcEEEEECCC
Confidence            45566666653       35788888776433211100  11 00  112222 45566666643     3577888877


Q ss_pred             ceeee--ecc---cc---eeEEEEeCCCCEEEEecCC-----------CcEEEEeCCCCCCCCcceeeec-cccceEEEE
Q psy17243        100 AQLLY--SAL---GP---SKCLTVTHNMKYIVSGDGD-----------NSLRIWPTSPQTHKDDERFTVS-HSEEITCFT  159 (392)
Q Consensus       100 ~~~~~--~~~---~~---~~~~~~~~~~~~l~~~~~d-----------~~i~~~d~~~~~~~~~~~~~~~-~~~~v~~~~  159 (392)
                      .+-..  ...   .+   ....+...+++.++.|+.+           ..+.+||..+............ ....-.+++
T Consensus       111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~  190 (341)
T PLN02153        111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA  190 (341)
T ss_pred             CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE
Confidence            64322  110   01   1122223355666666643           2477888875433221111000 011111222


Q ss_pred             EEcCCCEEEEeeC-------------CCcEEEEEcCCCeEE
Q psy17243        160 VTWDSQYLITGSR-------------DMSLKVWQVVGGKLA  187 (392)
Q Consensus       160 ~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~~  187 (392)
                      . -++++++.++.             ...+.+||+.+.+-.
T Consensus       191 ~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~  230 (341)
T PLN02153        191 V-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT  230 (341)
T ss_pred             E-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence            2 25555555542             146888998876543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=90.38  E-value=9  Score=31.53  Aligned_cols=141  Identities=11%  Similarity=0.101  Sum_probs=78.7

Q ss_pred             EEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC---CeEEEEEcCC---ceeeeecc----c--ceeEEEEeC
Q psy17243         50 AKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA---GVIAVWVADN---AQLLYSAL----G--PSKCLTVTH  117 (392)
Q Consensus        50 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~---~~~~~~~~----~--~~~~~~~~~  117 (392)
                      -.+||+.+++....--...--+.+-.+.+||+.|.+|+..   ..+++++..+   .....+..    .  -......-+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            4589988876543222233344455678999999988753   3577887654   11111111    1  123456678


Q ss_pred             CCCEEEEecCCCc-EEEEeCCCCCC-CCcceeee-----ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEE
Q psy17243        118 NMKYIVSGDGDNS-LRIWPTSPQTH-KDDERFTV-----SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL  190 (392)
Q Consensus       118 ~~~~l~~~~~d~~-i~~~d~~~~~~-~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  190 (392)
                      ||+.|+.|+.... ..+|....... ........     ....----+...|+|++|+.+..+  -.|||..+.+.++.+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence            9999999988743 33443321111 00110110     011112245577899999888765  457798888776666


Q ss_pred             ec
Q psy17243        191 VG  192 (392)
Q Consensus       191 ~~  192 (392)
                      ..
T Consensus       206 P~  207 (243)
T PF07250_consen  206 PD  207 (243)
T ss_pred             CC
Confidence            54

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.34  E-value=1.9  Score=23.78  Aligned_cols=31  Identities=13%  Similarity=0.060  Sum_probs=23.9

Q ss_pred             cCCCEEEEee-CCCcEEEEEcCCCeEEEEEec
Q psy17243        162 WDSQYLITGS-RDMSLKVWQVVGGKLAQVLVG  192 (392)
Q Consensus       162 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  192 (392)
                      |++++|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4677666655 578999999999888877764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.27  E-value=1.9  Score=23.76  Aligned_cols=31  Identities=19%  Similarity=0.126  Sum_probs=23.3

Q ss_pred             CCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        205 TNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       205 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      .++.++++...++.|.++|..+++.+..+..
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            3445566666789999999998888877765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.01  E-value=1.2  Score=39.38  Aligned_cols=146  Identities=13%  Similarity=0.057  Sum_probs=83.2

Q ss_pred             cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc---cceE-EEEEEcCCCEEEEeeCCCcEEEE-EcC
Q psy17243        108 GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS---EEIT-CFTVTWDSQYLITGSRDMSLKVW-QVV  182 (392)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~dg~i~i~-d~~  182 (392)
                      .++..+-..|+++.+++-+. ..+.++++.+..............   ..|+ .+..-..+.-+++++.||-|.-| |++
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr  299 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR  299 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence            45667889999999988776 778888886443322211111111   1222 22222346668888899988776 554


Q ss_pred             CC-e----EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        183 GG-K----LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       183 ~~-~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .+ +    .++.++-...++..+.-. .+.+-+++-+.+|++.++.....+.+.. ..--..+.-+++||.+.++++.-
T Consensus       300 ~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~e~  376 (733)
T COG4590         300 RDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYLLSED  376 (733)
T ss_pred             cCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchheeec
Confidence            33 2    122222222333333322 3455677778889998887554443322 22223567788999888777653

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.00  E-value=2  Score=40.59  Aligned_cols=72  Identities=19%  Similarity=0.282  Sum_probs=44.4

Q ss_pred             cCCCEEEEeeCCCcEEEEEcCC----CeEEEE-Eec---------------------CCCceeEEEEec---CCCcEEEE
Q psy17243        162 WDSQYLITGSRDMSLKVWQVVG----GKLAQV-LVG---------------------HTDHVSCVAVAV---TNKSLVVS  212 (392)
Q Consensus       162 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~-~~~---------------------~~~~v~~~~~~~---~~~~~l~~  212 (392)
                      ++...++.+..||.+.......    +..... ...                     .......+++++   .+..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3667888888899988888764    211111 110                     012344555552   26789999


Q ss_pred             ecCCCeEEEEECCCCceeeee
Q psy17243        213 GSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       213 ~~~dg~i~iwd~~~~~~~~~~  233 (392)
                      .+.|+++|+||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999986543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1983|consensus

Probab=89.93  E-value=12  Score=38.12  Aligned_cols=30  Identities=23%  Similarity=0.413  Sum_probs=25.9

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCC
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLT   56 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~   56 (392)
                      .....++|+|...++|.+...|.|++|-..
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEeccc
Confidence            456788999999999999999999999654

>KOG1898|consensus

Probab=89.74  E-value=23  Score=35.36  Aligned_cols=171  Identities=13%  Similarity=0.112  Sum_probs=94.3

Q ss_pred             eEEEEECCCccceeeeccC----CcCeeEEEecCCCC--eEEEEeC-----------CCeEEEEeCC-CCceeEEecc--
Q psy17243          7 LVNVWQMNSHELQSTMEGH----LNTVSCVAISPNSI--FAVSGSE-----------DNTAKVWGLT-LGSVVSTFKS--   66 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~--~l~~~~~-----------dg~v~iwd~~-~~~~~~~~~~--   66 (392)
                      .|++.|..+++.+..+.-.    .-.|.++.|+....  +++++..           +|.++.|++- .++.+.-+..  
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            5889998888877665421    22456666765332  3444432           2446666542 3343322221  


Q ss_pred             cccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccce---eEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCC
Q psy17243         67 HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKD  143 (392)
Q Consensus        67 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  143 (392)
                      -.+++.  +..|-..++++ +....+++||+.+.++++......   .-...--.+..+++|...-.+.++-.+......
T Consensus       934 ~~~~v~--Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen  934 IPGPVG--AICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred             CCccce--EEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeE
Confidence            223343  44555554444 456789999999988876544322   222223356788888877777766555332222


Q ss_pred             cceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEc
Q psy17243        144 DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV  181 (392)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  181 (392)
                      ....-..-...|+++.+- |...++.+..-|.+.+-.+
T Consensus      1011 ~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred             EEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEEC
Confidence            222222334556666554 4556777777677666554

>KOG1916|consensus

Probab=89.69  E-value=0.5  Score=45.29  Aligned_cols=100  Identities=15%  Similarity=0.160  Sum_probs=59.4

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEe-----------cCCCCeEEEEeCCCeEEEEeCC-----CCceeEEecc
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAI-----------SPNSIFAVSGSEDNTAKVWGLT-----LGSVVSTFKS   66 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-----------~~~~~~l~~~~~dg~v~iwd~~-----~~~~~~~~~~   66 (392)
                      -.++.|++.+.+.... ..+.+|...+..++|           +|||+.++.++.||.++.|.+.     ..+++...+.
T Consensus       202 ~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp  280 (1283)
T KOG1916|consen  202 LKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP  280 (1283)
T ss_pred             cCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence            3566777766554322 445567776666654           7899999999999998888653     2344555666


Q ss_pred             cc-cceEEEEEecCCC---------EEEEE-eCCCeEEEEEcCCceee
Q psy17243         67 HQ-STILAVAVLSDSR---------RVVTS-DKAGVIAVWVADNAQLL  103 (392)
Q Consensus        67 ~~-~~v~~~~~~~~~~---------~l~~~-~~d~~i~iwd~~~~~~~  103 (392)
                      |. .+-.|.-++.+..         +++++ ..+..+++|....-+++
T Consensus       281 hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  281 HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            66 3333333433221         23333 33456888876665554

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.51  E-value=6.5  Score=28.65  Aligned_cols=112  Identities=15%  Similarity=0.178  Sum_probs=62.4

Q ss_pred             eCCCCEEEEecCCCcEEEEeCCCCCCC----CcceeeeccccceEEEEEEc-----CCCEEEEeeCCCcEEEEEcCCCeE
Q psy17243        116 THNMKYIVSGDGDNSLRIWPTSPQTHK----DDERFTVSHSEEITCFTVTW-----DSQYLITGSRDMSLKVWQVVGGKL  186 (392)
Q Consensus       116 ~~~~~~l~~~~~d~~i~~~d~~~~~~~----~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~  186 (392)
                      ......|++++..|+|.+++.......    ........-...|++++-.+     +...|+.|+ ...+..||+.+..-
T Consensus         7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d   85 (136)
T PF14781_consen    7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSD   85 (136)
T ss_pred             CCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCch
Confidence            333445666666666767665432211    11112223456677776443     245677776 45799999987765


Q ss_pred             EEEEecCCCceeEEEEec---CCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        187 AQVLVGHTDHVSCVAVAV---TNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       187 ~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      +.... -.+.++++.+-.   ....+++.| .+..|.-||.+-.+..
T Consensus        86 ~Fyke-~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   86 LFYKE-VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF  130 (136)
T ss_pred             hhhhh-CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence            44322 346677776632   234455554 4777888876644433

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=89.43  E-value=13  Score=32.19  Aligned_cols=103  Identities=12%  Similarity=0.055  Sum_probs=52.4

Q ss_pred             CCCeEEEEeCC-----CeEEEEeCCCCce---eEEecccccce--EEEEEecCCCEEEEEeC-----CCeEEEEEcCCce
Q psy17243         37 NSIFAVSGSED-----NTAKVWGLTLGSV---VSTFKSHQSTI--LAVAVLSDSRRVVTSDK-----AGVIAVWVADNAQ  101 (392)
Q Consensus        37 ~~~~l~~~~~d-----g~v~iwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~  101 (392)
                      ++.+++.|+.+     ..+..+|+.+.+.   ...+..-..+.  .+++. -+++..+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45566666654     3566777766543   12222111111  12222 24556666664     2468888888764


Q ss_pred             eeee--ccc--ceeEEEEeCCCCEEEEecCCC----cEEEEeCCCCC
Q psy17243        102 LLYS--ALG--PSKCLTVTHNMKYIVSGDGDN----SLRIWPTSPQT  140 (392)
Q Consensus       102 ~~~~--~~~--~~~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~  140 (392)
                      -...  ...  .....+...+++..+.|+.++    .+.+||+.+..
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            3221  221  112233345667777777653    35678887544

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=89.25  E-value=18  Score=33.45  Aligned_cols=143  Identities=10%  Similarity=0.049  Sum_probs=68.7

Q ss_pred             CCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee--cccc----eeEEEEeCCC
Q psy17243         46 EDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS--ALGP----SKCLTVTHNM  119 (392)
Q Consensus        46 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~----~~~~~~~~~~  119 (392)
                      ......++| ..|.....+.........+...++|.+++...  ..+..+|+... .+..  +...    ...+...|+|
T Consensus       126 ~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~~~~~~HHD~~~l~nG  201 (477)
T PF05935_consen  126 SSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPGGYYDFHHDIDELPNG  201 (477)
T ss_dssp             BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred             CCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCCcccccccccEECCCC
Confidence            445666777 34555555543222222266778888776655  77888888643 3322  2221    2356667888


Q ss_pred             CEEEEecC--------------C--------C-cEEEEeCCCCCCCCccee--------e-----ec--cccceEEEEEE
Q psy17243        120 KYIVSGDG--------------D--------N-SLRIWPTSPQTHKDDERF--------T-----VS--HSEEITCFTVT  161 (392)
Q Consensus       120 ~~l~~~~~--------------d--------~-~i~~~d~~~~~~~~~~~~--------~-----~~--~~~~v~~~~~~  161 (392)
                      ++|+.+..              |        | .+..||+...-  .....        .     ..  .=.-++++.+.
T Consensus       202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~l--d~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd  279 (477)
T PF05935_consen  202 NLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHL--DPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD  279 (477)
T ss_dssp             -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS---TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred             CEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhC--CcccccccccccccccccCCCCCCccccCccEEe
Confidence            88877761              1        1 23445543211  00000        0     00  01247889999


Q ss_pred             c-CCCEEEEeeCCCcEEEEEcCCCeEEEEEecCC
Q psy17243        162 W-DSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT  194 (392)
Q Consensus       162 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  194 (392)
                      + ++.+++++-.-..|...|.++++....+-.+.
T Consensus       280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~  313 (477)
T PF05935_consen  280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG  313 (477)
T ss_dssp             TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred             CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence            8 45555555555689999988888877775543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.04  E-value=14  Score=32.18  Aligned_cols=102  Identities=16%  Similarity=0.094  Sum_probs=55.7

Q ss_pred             ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE---EEEE----ecCCCceeEEEEecC---CCcEEEEecCC-------
Q psy17243        154 EITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL---AQVL----VGHTDHVSCVAVAVT---NKSLVVSGSKD-------  216 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~~l~~~~~d-------  216 (392)
                      ..+.|+|.||++++++ ...|.|++++ ..+..   +..+    .........++++|.   ++.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999877665 5599999999 44443   2222    123456788999962   34444433321       


Q ss_pred             -CeEEEEECCCC-------cee-eeecc---cccceeEEEEcCCCeEEEEcCC
Q psy17243        217 -SNLIVWDMETG-------GEE-HFLAG---HLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       217 -g~i~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                       ..|.-|....+       +.+ ..+..   ....-..|.|.|||.+.++...
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence             23444444333       111 12222   2234567999999987776543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=88.74  E-value=14  Score=31.47  Aligned_cols=164  Identities=11%  Similarity=0.081  Sum_probs=89.4

Q ss_pred             CeEEEEECCCccceeeecc------CCcCeeEEEecCCC-----CeEEEE-eCCCeEEEEeCCCCceeEEeccc------
Q psy17243          6 CLVNVWQMNSHELQSTMEG------HLNTVSCVAISPNS-----IFAVSG-SEDNTAKVWGLTLGSVVSTFKSH------   67 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~------h~~~v~~~~~~~~~-----~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~------   67 (392)
                      -.|.+||+.+.++++++.-      ..+.+..+.+....     .++..+ +..+-|.|+|+.+++.-+.+..+      
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            3788999999998887642      24566777776621     233333 33467999999998765555322      


Q ss_pred             -------------ccceEEEEEec---CCCEEEEEeCCC-eEEEEEc---CCc------------eeeeecccceeEEEE
Q psy17243         68 -------------QSTILAVAVLS---DSRRVVTSDKAG-VIAVWVA---DNA------------QLLYSALGPSKCLTV  115 (392)
Q Consensus        68 -------------~~~v~~~~~~~---~~~~l~~~~~d~-~i~iwd~---~~~------------~~~~~~~~~~~~~~~  115 (392)
                                   ...+..++.+|   +++.|.-....+ .++--..   .+.            +.+.........+++
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                         12255555544   444555444332 1222211   111            111111234567889


Q ss_pred             eCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeec--c-ccceEEEEEEc--CCCEEEE
Q psy17243        116 THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS--H-SEEITCFTVTW--DSQYLIT  169 (392)
Q Consensus       116 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~-~~~v~~~~~~~--~~~~l~~  169 (392)
                      +++|..+++--..+.|..|+...............  . -..+..+.+.+  ++.+.+.
T Consensus       194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~  252 (287)
T PF03022_consen  194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL  252 (287)
T ss_dssp             ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred             CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence            99999999999999999999875332222222211  1 24567777776  5544333

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.57  E-value=16  Score=31.86  Aligned_cols=103  Identities=13%  Similarity=0.128  Sum_probs=61.9

Q ss_pred             cceEEEEEecCCCEEEEEeCCCe------EEEEEcCCc-----e-------eeeeccc--------ceeEEEEeCCCCEE
Q psy17243         69 STILAVAVLSDSRRVVTSDKAGV------IAVWVADNA-----Q-------LLYSALG--------PSKCLTVTHNMKYI  122 (392)
Q Consensus        69 ~~v~~~~~~~~~~~l~~~~~d~~------i~iwd~~~~-----~-------~~~~~~~--------~~~~~~~~~~~~~l  122 (392)
                      +.+..+.+.+++..+++.+.+|.      +...++...     .       .+....+        ....+++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            45678888866666777777777      655554431     0       0111111        23467777777777


Q ss_pred             EEecCC------CcEEEEeCCCCCCCCcce------------eeeccccceEEEEEEcCCCEEEEeeC
Q psy17243        123 VSGDGD------NSLRIWPTSPQTHKDDER------------FTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus       123 ~~~~~d------~~i~~~d~~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      ++.-.+      ..|..++.. +.......            .....+.....++++|+++.|++..+
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            776666      788888865 22221111            11234567899999999997776654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.51  E-value=7.8  Score=28.26  Aligned_cols=108  Identities=10%  Similarity=0.139  Sum_probs=65.7

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCce----------eeeecccceeEEEEeC-----CCCEEEEecCCCcEEEEeCCC
Q psy17243         74 VAVLSDSRRVVTSDKAGVIAVWVADNAQ----------LLYSALGPSKCLTVTH-----NMKYIVSGDGDNSLRIWPTSP  138 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------~~~~~~~~~~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~  138 (392)
                      -.|......|++++..|+|.|++.....          ....+...+++++-.+     +...|+.|+. ..+..||+..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN   82 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence            3565566788899999999999866432          2334555777776544     3445666655 5688999974


Q ss_pred             CCCCCcceeeeccccceEEEEEEc----CCCEEEEeeCCCcEEEEEcCCCeEE
Q psy17243        139 QTHKDDERFTVSHSEEITCFTVTW----DSQYLITGSRDMSLKVWQVVGGKLA  187 (392)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~  187 (392)
                      ....    +...-...++++.+-.    ...++++|+ +..|.-||..-.+..
T Consensus        83 N~d~----Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   83 NSDL----FYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIF  130 (136)
T ss_pred             Cchh----hhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence            3322    2223456777776642    233455544 667777876544433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=88.27  E-value=19  Score=32.35  Aligned_cols=144  Identities=13%  Similarity=0.057  Sum_probs=74.9

Q ss_pred             eeEEEecCCCCeEEEEeCCCeEEEEeCCCCce--eEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCce-----
Q psy17243         29 VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV--VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ-----  101 (392)
Q Consensus        29 v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----  101 (392)
                      ...+..++++.+++.+..-..++-||  .++.  ...-......+..+.+.+++..++++ ..|.+.. ....++     
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence            34456677777766665433233343  3332  11122235568999999888777655 5555443 333332     


Q ss_pred             eeeecc-----cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcE
Q psy17243        102 LLYSAL-----GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSL  176 (392)
Q Consensus       102 ~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  176 (392)
                      ......     ..+..+.+.+++..+++ +..|.+..-.- .++.-........-......+.|.++++.+++| .+|.|
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~D-~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i  393 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRSTD-GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL  393 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeCC-CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence            122221     13566777777665555 45676655432 222211111112234567788887766555554 57776


Q ss_pred             EEE
Q psy17243        177 KVW  179 (392)
Q Consensus       177 ~i~  179 (392)
                      .-|
T Consensus       394 l~~  396 (398)
T PLN00033        394 LRY  396 (398)
T ss_pred             EEe
Confidence            554

>PLN02153 epithiospecifier protein

Probab=88.26  E-value=17  Score=31.87  Aligned_cols=149  Identities=7%  Similarity=-0.020  Sum_probs=69.9

Q ss_pred             CCCeEEEEeCC-----CeEEEEeCCCCceeE--Eecc---cccceEEEEEecCCCEEEEEeCC-----------CeEEEE
Q psy17243         37 NSIFAVSGSED-----NTAKVWGLTLGSVVS--TFKS---HQSTILAVAVLSDSRRVVTSDKA-----------GVIAVW   95 (392)
Q Consensus        37 ~~~~l~~~~~d-----g~v~iwd~~~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iw   95 (392)
                      ++++++.|+.+     ..+.+||+.+.+-..  .+..   ........+..-+++.++.|+.+           ..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            45566677653     357788887654332  1110   11111222222355666666643           247788


Q ss_pred             EcCCceeeeecc------cceeEEEEeCCCCEEEEecC-------------CCcEEEEeCCCCCCCCcceee-eccccce
Q psy17243         96 VADNAQLLYSAL------GPSKCLTVTHNMKYIVSGDG-------------DNSLRIWPTSPQTHKDDERFT-VSHSEEI  155 (392)
Q Consensus        96 d~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~~~~~~~~~-~~~~~~v  155 (392)
                      |..+.+-.....      ..........+++.++.++.             ...+.+||+.+.+........ .......
T Consensus       165 d~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~  244 (341)
T PLN02153        165 NIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSV  244 (341)
T ss_pred             ECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcce
Confidence            887764322111      00111112235555555442             246888988755433221110 0011111


Q ss_pred             EEEEEEcCCCEEEEeeCC--------------CcEEEEEcCCCeE
Q psy17243        156 TCFTVTWDSQYLITGSRD--------------MSLKVWQVVGGKL  186 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~  186 (392)
                      .++ ...++++++.|+..              ..+..||+.+.+-
T Consensus       245 ~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W  288 (341)
T PLN02153        245 FAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW  288 (341)
T ss_pred             eee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence            222 22356677777742              2577888876653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=87.39  E-value=22  Score=32.11  Aligned_cols=220  Identities=12%  Similarity=0.165  Sum_probs=119.4

Q ss_pred             CCccCCeEEEEECCCccce--ee-ec-cCCcCeeEEEecC-----CCCeEEEEeCCCeEEEEeCCC--Cc-------eeE
Q psy17243          1 MGGMDCLVNVWQMNSHELQ--ST-ME-GHLNTVSCVAISP-----NSIFAVSGSEDNTAKVWGLTL--GS-------VVS   62 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~--~~-~~-~h~~~v~~~~~~~-----~~~~l~~~~~dg~v~iwd~~~--~~-------~~~   62 (392)
                      +|+..|.++||+.......  .. ++ .-..+|..+..-+     +...||. =.-..+.||.+..  |.       .+.
T Consensus        42 vGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~L~  120 (418)
T PF14727_consen   42 VGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQLE  120 (418)
T ss_pred             EeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcEEEEE
Confidence            4888999999998543311  11 11 1456788777642     2234444 3457788887721  11       122


Q ss_pred             Eeccccc--ceEEEEEec----C-CCEEEEEeCCCeEEEEEcCCceeeeeccc--ceeEEEEeCCCCEEEEecCCCcEEE
Q psy17243         63 TFKSHQS--TILAVAVLS----D-SRRVVTSDKAGVIAVWVADNAQLLYSALG--PSKCLTVTHNMKYIVSGDGDNSLRI  133 (392)
Q Consensus        63 ~~~~~~~--~v~~~~~~~----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~~  133 (392)
                      .+..|.-  ....++.-|    . ...|.+-+.||.+.+++-+.......+..  -...+.+.+....|++++.+..+..
T Consensus       121 ~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~  200 (418)
T PF14727_consen  121 LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLEC  200 (418)
T ss_pred             EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEE
Confidence            2222332  223333322    2 35788899999999999887655444433  2346788888889999999999998


Q ss_pred             EeCCCCC-------------------CCCcceeeeccccceEEEEEEc---CCCEEEEeeCCCcEEEEEcCCCeEEEEEe
Q psy17243        134 WPTSPQT-------------------HKDDERFTVSHSEEITCFTVTW---DSQYLITGSRDMSLKVWQVVGGKLAQVLV  191 (392)
Q Consensus       134 ~d~~~~~-------------------~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  191 (392)
                      |......                   ..........-...+..+....   ....+++-+ ..++.+.+. +|+.....+
T Consensus       201 Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G~l~~~kr  278 (418)
T PF14727_consen  201 YKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NGSLRFQKR  278 (418)
T ss_pred             ecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CCeEEEEEe
Confidence            8653110                   0111111122233444444332   333444444 345666664 454433332


Q ss_pred             cCCCceeEEE-Eec------CCCcEEEEecCCCeEEEEEC
Q psy17243        192 GHTDHVSCVA-VAV------TNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       192 ~~~~~v~~~~-~~~------~~~~~l~~~~~dg~i~iwd~  224 (392)
                       ......|++ +..      .....++.++.++.+.||.=
T Consensus       279 -Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d  317 (418)
T PF14727_consen  279 -LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED  317 (418)
T ss_pred             -cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC
Confidence             233222222 221      11234777888999998863

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=87.20  E-value=23  Score=32.19  Aligned_cols=32  Identities=28%  Similarity=0.372  Sum_probs=25.7

Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGG  184 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  184 (392)
                      ..|.+++..+..+.+++...+|.|.+|++..+
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            34899999998899999999999999999753

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=87.16  E-value=17  Score=30.61  Aligned_cols=175  Identities=11%  Similarity=0.064  Sum_probs=97.2

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc---eeEEecccccceEEEEEecCCC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS---VVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      +.-++|.|+.+......+..-.-.=..-.+.-.|++...+..|.-+.+.|+.+.+   +..++......-..++.+  |+
T Consensus       105 ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn  182 (370)
T COG5276         105 SSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN  182 (370)
T ss_pred             CCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC
Confidence            4457888887655444332211101122333457788888766667788886553   334444444444566665  67


Q ss_pred             EEEEEeCCCeEEEEEcCCcee---eeecc--cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         82 RVVTSDKAGVIAVWVADNAQL---LYSAL--GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~---~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      +-..+..|+-+.+.|+.+...   +....  ..+..+..+++..+++..  +.-+.+-|....+........ ....++.
T Consensus       183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsy-et~~p~~  259 (370)
T COG5276         183 YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSY-ETSNPVS  259 (370)
T ss_pred             eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeecc-ccCCccc
Confidence            888888999999999986533   32222  245566666665555443  334556666543322222211 1112221


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCC
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGG  184 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~  184 (392)
                      .-.+.-.+++.+....+.-+.+-|+.+.
T Consensus       260 ~s~v~Vs~~~~Yvadga~gl~~idisnp  287 (370)
T COG5276         260 ISTVPVSGEYAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             ccceecccceeeeeccccCceeEeccCC
Confidence            1123334677777777777888887654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=87.08  E-value=16  Score=30.37  Aligned_cols=214  Identities=12%  Similarity=0.028  Sum_probs=131.4

Q ss_pred             CeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeee-e-
Q psy17243         28 TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY-S-  105 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~-  105 (392)
                      .-..++-.|||..-+++...+.|--.|..+|+....--+....-..+..-||+..-++-+.. -|.-.|-++.+... . 
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            34566777788777777777777777888887765555555556777888888776664443 45555665554322 1 


Q ss_pred             ----cccceeEEEEeCCCCEEEEecCC---------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243        106 ----ALGPSKCLTVTHNMKYIVSGDGD---------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus       106 ----~~~~~~~~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                          -........|.+.|++-+++...         +.|++|+.             ........|+..|+|..-++.-.
T Consensus       142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa-------------PqG~gpyGi~atpdGsvwyasla  208 (353)
T COG4257         142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA-------------PQGGGPYGICATPDGSVWYASLA  208 (353)
T ss_pred             ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc-------------CCCCCCcceEECCCCcEEEEecc
Confidence                11244577888888887776531         23344432             23345577888999998888777


Q ss_pred             CCcEEEEEcCCCeEEEEEe--cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce-eeeecccccceeEEEEcCCC
Q psy17243        173 DMSLKVWQVVGGKLAQVLV--GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE-EHFLAGHLGCVTCVKLAGDG  249 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~dg  249 (392)
                      +..|-..|..++.....-.  ........+ |+.+.+..-++....+.+.-+|-.+..- ...+.+....-.++-....+
T Consensus       209 gnaiaridp~~~~aev~p~P~~~~~gsRri-wsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g  287 (353)
T COG4257         209 GNAIARIDPFAGHAEVVPQPNALKAGSRRI-WSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG  287 (353)
T ss_pred             ccceEEcccccCCcceecCCCccccccccc-ccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCC
Confidence            8888888887763222111  111122233 4435666777766778888888765442 23445555555666666666


Q ss_pred             eEEEEcC
Q psy17243        250 TVAMSDL  256 (392)
Q Consensus       250 ~~~~~~~  256 (392)
                      ++-+++.
T Consensus       288 rVW~sea  294 (353)
T COG4257         288 RVWLSEA  294 (353)
T ss_pred             cEEeecc
Confidence            6665544

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.05  E-value=2.9  Score=22.68  Aligned_cols=32  Identities=13%  Similarity=0.201  Sum_probs=20.5

Q ss_pred             eccCCcCeeEEEecCCCCeEEEEe-CC--CeEEEE
Q psy17243         22 MEGHLNTVSCVAISPNSIFAVSGS-ED--NTAKVW   53 (392)
Q Consensus        22 ~~~h~~~v~~~~~~~~~~~l~~~~-~d--g~v~iw   53 (392)
                      +......-....|+|||++|+-++ .+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344556678899999999877654 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.98  E-value=20  Score=31.25  Aligned_cols=144  Identities=15%  Similarity=0.166  Sum_probs=81.2

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCe------EEEEeCCC--C--ceeE-----Eeccccc--------ceEEEEEecCCC
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNT------AKVWGLTL--G--SVVS-----TFKSHQS--------TILAVAVLSDSR   81 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~------v~iwd~~~--~--~~~~-----~~~~~~~--------~v~~~~~~~~~~   81 (392)
                      .-+.+..|.+.+++..+++.+.+|.      +...++..  +  ..+.     .+....+        ...+|++.+++.
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            3466789999975556666677777      55555443  1  1111     1111111        344788877777


Q ss_pred             EEEEEeCC------CeEEEEEcCCceeeeec------------------ccceeEEEEeCCCCEEEEecCC-----C--c
Q psy17243         82 RVVTSDKA------GVIAVWVADNAQLLYSA------------------LGPSKCLTVTHNMKYIVSGDGD-----N--S  130 (392)
Q Consensus        82 ~l~~~~~d------~~i~iwd~~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~d-----~--~  130 (392)
                      ++++.-.+      ..|..++.. ++.+..+                  +.....++++|+++.|+++.+.     +  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            77776666      678888876 4443222                  1134589999999977765432     1  1


Q ss_pred             -------EEEEeCCCCC---CCCcceeeec------cccceEEEEEEcCCCEEEE
Q psy17243        131 -------LRIWPTSPQT---HKDDERFTVS------HSEEITCFTVTWDSQYLIT  169 (392)
Q Consensus       131 -------i~~~d~~~~~---~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~  169 (392)
                             ++++......   ......+...      ....+..+.+.+++++|+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                   4554443221   1222222222      3566777888888776554

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=86.76  E-value=26  Score=32.43  Aligned_cols=118  Identities=15%  Similarity=0.098  Sum_probs=63.2

Q ss_pred             EEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecc--ccceEEEEEEcCCCEEEEeeC-------------CCcEE
Q psy17243        113 LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH--SEEITCFTVTWDSQYLITGSR-------------DMSLK  177 (392)
Q Consensus       113 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~-------------dg~i~  177 (392)
                      +...++|.+++...  ..+..+|+...   .........  ...-..+...|+|++|+.+..             .-.|.
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~G~---v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Iv  227 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLLGK---VIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIV  227 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT-----EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCCCC---EEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEE
Confidence            56677888776655  77777777421   111111111  011244567788998887772             12366


Q ss_pred             EEEcCCCeEEEEEec--C----C---------------------CceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        178 VWQVVGGKLAQVLVG--H----T---------------------DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       178 i~d~~~~~~~~~~~~--~----~---------------------~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      .+| .+|+.+..+..  |    .                     --++++.+.+.++.+++++-.-..|...|.++++..
T Consensus       228 evd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~  306 (477)
T PF05935_consen  228 EVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK  306 (477)
T ss_dssp             EE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred             EEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence            667 77776665421  1    0                     126889999778888888877778999998888877


Q ss_pred             eeeccc
Q psy17243        231 HFLAGH  236 (392)
Q Consensus       231 ~~~~~~  236 (392)
                      ..+-.+
T Consensus       307 Wilg~~  312 (477)
T PF05935_consen  307 WILGPP  312 (477)
T ss_dssp             EEES-S
T ss_pred             EEeCCC
Confidence            666543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG3616|consensus

Probab=86.64  E-value=14  Score=35.39  Aligned_cols=68  Identities=15%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             cccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee--eeecccceeEEEEeCCCCEEEEecCCCcEEEEeC
Q psy17243         67 HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL--LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPT  136 (392)
Q Consensus        67 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~  136 (392)
                      ....++++.-+|.++.++.+..||.|++|+......  +.+...|...+.|...|  +++.+.|..+.-|.-
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeec
Confidence            345678888899999999999999999998765543  44555555566665555  556666666666643

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.52  E-value=23  Score=31.42  Aligned_cols=193  Identities=13%  Similarity=0.149  Sum_probs=105.7

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEe----cCCCE--EEEEe-CC---CeEEEEEcC--Cceeee
Q psy17243         37 NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVL----SDSRR--VVTSD-KA---GVIAVWVAD--NAQLLY  104 (392)
Q Consensus        37 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---~~i~iwd~~--~~~~~~  104 (392)
                      ...+++....++-+.+||++ |+.++.+.  .+..+.+...    -+++.  |++++ .+   ..|++|.+.  ++.+ .
T Consensus        67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L-~  142 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL-T  142 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-E
T ss_pred             ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-e
Confidence            34577778888999999976 56666664  2333433332    13433  34443 32   468999765  3332 2


Q ss_pred             ecc----------cceeEEEE--eC-CCC-EEEEecCCCcEEEEeCCCCCCC---CcceeeeccccceEEEEEEcCCCEE
Q psy17243        105 SAL----------GPSKCLTV--TH-NMK-YIVSGDGDNSLRIWPTSPQTHK---DDERFTVSHSEEITCFTVTWDSQYL  167 (392)
Q Consensus       105 ~~~----------~~~~~~~~--~~-~~~-~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l  167 (392)
                      ...          ..+..+|+  ++ ++. ++++...+|.+..|.+......   ........-..++..+.......+|
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L  222 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL  222 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence            111          12344554  44 344 6667788899988877532221   1112222445688888898888899


Q ss_pred             EEeeCCCcEEEEEcCCC-----eEEEEEec--CCCceeEEEEec--CC-CcEEEEecCCCeEEEEECCCC-ceeeee
Q psy17243        168 ITGSRDMSLKVWQVVGG-----KLAQVLVG--HTDHVSCVAVAV--TN-KSLVVSGSKDSNLIVWDMETG-GEEHFL  233 (392)
Q Consensus       168 ~~~~~dg~i~i~d~~~~-----~~~~~~~~--~~~~v~~~~~~~--~~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~  233 (392)
                      +.+-++--|.-|+.+..     +.+....+  ....|..+++-.  .. +.+|++.-.+++..||+.+.. ..+..+
T Consensus       223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence            99999988888887522     22222222  345677776642  22 334555545789999998753 334433

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=86.02  E-value=30  Score=32.40  Aligned_cols=174  Identities=14%  Similarity=0.127  Sum_probs=104.8

Q ss_pred             CeEEEEeCCCCceeEEecc--cccceEEEEEecCCCEEEEEeCCCeEEEEEcCCc---eeeeecccceeEEEEeC--CCC
Q psy17243         48 NTAKVWGLTLGSVVSTFKS--HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA---QLLYSALGPSKCLTVTH--NMK  120 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~--~~~  120 (392)
                      +.|.+.| ++.+.+..+.+  ....|.++.|..+.-++++--.---+.+.|+.+.   +.+.+++-|-.+--+||  ++.
T Consensus       304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~  382 (521)
T PF09826_consen  304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENH  382 (521)
T ss_pred             EEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCCe
Confidence            5577777 66677766653  4578999999988888888877777889988775   44555555555555566  444


Q ss_pred             EEEEecCCC-----------cEEEEeCCCCCCCCcceeeec--------cccceEEEEEEcCCCEEEEeeC-------CC
Q psy17243        121 YIVSGDGDN-----------SLRIWPTSPQTHKDDERFTVS--------HSEEITCFTVTWDSQYLITGSR-------DM  174 (392)
Q Consensus       121 ~l~~~~~d~-----------~i~~~d~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~-------dg  174 (392)
                      +|-.|-...           +|.+||+.......+.....-        -...-.++.|.+..++|+.--.       -.
T Consensus       383 LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~~~~~~~~  462 (521)
T PF09826_consen  383 LLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSSYGYFNFQ  462 (521)
T ss_pred             EEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEccCccccc
Confidence            555554322           477899986554433322211        0112346777877776664332       13


Q ss_pred             cEEEEEcC--CC-eEEEEEecCCC-------ceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        175 SLKVWQVV--GG-KLAQVLVGHTD-------HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       175 ~i~i~d~~--~~-~~~~~~~~~~~-------~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      .+.+|++.  ++ +....+. |..       .+....+.   +..|.+-+ ++.|+++|+++.
T Consensus       463 g~~v~~i~~~~g~~~~g~i~-h~~~~~~~~~~~~R~lyi---~d~lYtvS-~~~i~~~~l~t~  520 (521)
T PF09826_consen  463 GAYVFSIDPEDGFTLKGKIT-HPSPDYYYSYQIQRSLYI---GDTLYTVS-DNGIKAYDLNTL  520 (521)
T ss_pred             eEEEEEEeCCCCeEEEEEEE-ccCcccccccceeEEEEE---CCEEEEEE-CCEEEEEehHhc
Confidence            46777776  22 2223333 444       25555555   34455554 678999998764

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=85.96  E-value=12  Score=30.78  Aligned_cols=128  Identities=9%  Similarity=0.122  Sum_probs=68.4

Q ss_pred             EEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC---CeEEEEeCCC----CceeE---EecccccceEEEEEec
Q psy17243          9 NVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED---NTAKVWGLTL----GSVVS---TFKSHQSTILAVAVLS   78 (392)
Q Consensus         9 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~v~iwd~~~----~~~~~---~~~~~~~~v~~~~~~~   78 (392)
                      .+||+.+++....-.....-..+-.+.+||++|.+|+..   ..+++++..+    .....   .+. ....-......|
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~  127 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLP  127 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceECC
Confidence            356666654332211122233344567889999888652   3477887544    11111   111 222334455668


Q ss_pred             CCCEEEEEeCCCe-EEEEEcCCc--eeee-ecc---------cceeEEEEeCCCCEEEEecCCCcEEEEeCCCC
Q psy17243         79 DSRRVVTSDKAGV-IAVWVADNA--QLLY-SAL---------GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ  139 (392)
Q Consensus        79 ~~~~l~~~~~d~~-i~iwd~~~~--~~~~-~~~---------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  139 (392)
                      ||+.|+.|+.... ..+|.....  .... .+.         .-...+...|+|+.|+.+..+..  +||....
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n  199 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTN  199 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCC
Confidence            9999999888753 344443211  1111 011         11235777899999998887554  5576543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=85.59  E-value=22  Score=30.34  Aligned_cols=181  Identities=13%  Similarity=0.125  Sum_probs=99.2

Q ss_pred             eEEEEeCCCCceeEEeccc------ccceEEEEEecCC-----CEEEEE-eCCCeEEEEEcCCceeeeecccceeEEEEe
Q psy17243         49 TAKVWGLTLGSVVSTFKSH------QSTILAVAVLSDS-----RRVVTS-DKAGVIAVWVADNAQLLYSALGPSKCLTVT  116 (392)
Q Consensus        49 ~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-----~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  116 (392)
                      +|.+||+.+++.++++.-.      .+.+..+.+....     .++..+ ...+-|.++|+.+++..+....   .+...
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~---~~~~~  111 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN---SFSPD  111 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC---GCTTS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC---Cccee
Confidence            7889999999988877532      4567788887632     234333 3346899999999877655443   11111


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc---CCCEEEEeeCCCcEEEEEcCC-----C----
Q psy17243        117 HNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW---DSQYLITGSRDMSLKVWQVVG-----G----  184 (392)
Q Consensus       117 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~-----~----  184 (392)
                      |+...+..+   |...-                 ....+..++.+|   +++.|+-....+. ++|.+.+     .    
T Consensus       112 p~~~~~~i~---g~~~~-----------------~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~  170 (287)
T PF03022_consen  112 PDAGPFTIG---GESFQ-----------------WPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSD  170 (287)
T ss_dssp             -SSEEEEET---TEEEE-----------------ETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--H
T ss_pred             ccccceecc---CceEe-----------------cCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccc
Confidence            211112111   11111                 112266666665   5667776654432 3444321     1    


Q ss_pred             -----eEEEEEecCC-CceeEEEEecCCCcEEEEecCCCeEEEEECCCCc---eeeee-cc-c-ccceeEEEEcC--CCe
Q psy17243        185 -----KLAQVLVGHT-DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG---EEHFL-AG-H-LGCVTCVKLAG--DGT  250 (392)
Q Consensus       185 -----~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~-~~-~-~~~v~~~~~~~--dg~  250 (392)
                           +.++.+ +.. .....++++ +++.++++--..+.|..|+..+.-   ....+ .. . -..+..+.+.+  +|.
T Consensus       171 ~~~~~~~v~~l-G~k~~~s~g~~~D-~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~  248 (287)
T PF03022_consen  171 AQALASQVQDL-GDKGSQSDGMAID-PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY  248 (287)
T ss_dssp             HH-HHHT-EEE-EE---SECEEEEE-TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred             cccccccceec-cccCCCCceEEEC-CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce
Confidence                 111222 222 355677888 688888888899999999988621   11222 11 1 34678999999  887


Q ss_pred             EEEEc
Q psy17243        251 VAMSD  255 (392)
Q Consensus       251 ~~~~~  255 (392)
                      +-+..
T Consensus       249 L~v~s  253 (287)
T PF03022_consen  249 LWVLS  253 (287)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76654

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=85.46  E-value=26  Score=31.17  Aligned_cols=175  Identities=10%  Similarity=0.020  Sum_probs=95.6

Q ss_pred             eEEEEeCCCCceeEEecc--cccceEEEEEecCCCEEEEEeCCCeEEEEEcCCce---eeeecccceeEEEEeC--CCCE
Q psy17243         49 TAKVWGLTLGSVVSTFKS--HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ---LLYSALGPSKCLTVTH--NMKY  121 (392)
Q Consensus        49 ~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~--~~~~  121 (392)
                      .|.|.| ++...+..+.+  ....|.++.|..|--++++--.-.-+.+.|+.+.+   .+..++-|-.+--.+|  ++..
T Consensus       407 ~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~  485 (603)
T COG4880         407 AVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRL  485 (603)
T ss_pred             eeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCcE
Confidence            455665 45566666654  45789999998887788888888888899987664   4444444444444555  5567


Q ss_pred             EEEecCCCcE--EEEeCCCCCCCCcceeeec------cccceEEEEEEcCCCE-EEEeeCCCcEEEEEcCCCeEEEEEec
Q psy17243        122 IVSGDGDNSL--RIWPTSPQTHKDDERFTVS------HSEEITCFTVTWDSQY-LITGSRDMSLKVWQVVGGKLAQVLVG  192 (392)
Q Consensus       122 l~~~~~d~~i--~~~d~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~  192 (392)
                      +-+|..+|.+  .+||+.......+.....-      --..-..+.|.|.-.. ++-+...|.  |+.++.+..+..-..
T Consensus       486 lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~kl~k~~e  563 (603)
T COG4880         486 LGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGSKLRKRAE  563 (603)
T ss_pred             EEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCccE--EEEEecCceeeehhh
Confidence            7778777755  5688865433322211100      0001122333344333 333444554  555556644444344


Q ss_pred             CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        193 HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       193 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      |+..+...-|. .+  ++..-+ -..+.++|-++.+.+
T Consensus       564 ~k~na~RA~fi-~d--ylY~vg-~~ev~~ldenswe~V  597 (603)
T COG4880         564 RKLNADRAFFI-KD--YLYLVG-GNEVWKLDENSWEVV  597 (603)
T ss_pred             hcccceeeEEe-cc--eEEEec-cceeEEeccchHhhh
Confidence            55555544454 33  333322 234666665554443

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=84.65  E-value=35  Score=31.93  Aligned_cols=236  Identities=12%  Similarity=0.142  Sum_probs=107.9

Q ss_pred             ccCCeEEEEECCCcc--ceeeeccC-CcCeeEEEecCCC-CeEEEEeC--CCeEEEEeCCCCceeEEecccccceEEEEE
Q psy17243          3 GMDCLVNVWQMNSHE--LQSTMEGH-LNTVSCVAISPNS-IFAVSGSE--DNTAKVWGLTLGSVVSTFKSHQSTILAVAV   76 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~--~~~~~~~h-~~~v~~~~~~~~~-~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~   76 (392)
                      ..+|.+....+....  .....-+. .....++.+..++ .+|+.|+.  |+.+.-|....-+.+..+. .-++|.+++.
T Consensus       229 ~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v  307 (504)
T PF10433_consen  229 DEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCV  307 (504)
T ss_dssp             ETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEE
T ss_pred             eCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEE
Confidence            456777666665322  11111122 4456677777665 35666655  4555555544445566666 4678999988


Q ss_pred             ecC----CC------EEEEEe---CCCeEEEEEcCCce---ee--eecccceeEEEEeCC----CCEEEEecCCCcEEEE
Q psy17243         77 LSD----SR------RVVTSD---KAGVIAVWVADNAQ---LL--YSALGPSKCLTVTHN----MKYIVSGDGDNSLRIW  134 (392)
Q Consensus        77 ~~~----~~------~l~~~~---~d~~i~iwd~~~~~---~~--~~~~~~~~~~~~~~~----~~~l~~~~~d~~i~~~  134 (392)
                      .+.    ..      .|++++   .+|.+++..-.-+-   .+  ..+.+ +..+..-+.    ..+++.+..+. -+++
T Consensus       308 ~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~~-T~vl  385 (504)
T PF10433_consen  308 VDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSFPNE-TRVL  385 (504)
T ss_dssp             E-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESSE-EEEE
T ss_pred             eccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEcCCc-eEEE
Confidence            632    12      566664   45778877432111   11  11222 333332222    45666666544 3455


Q ss_pred             eCCCCCCCCcc---ee--eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec-CCCceeEEEEecCCCc
Q psy17243        135 PTSPQTHKDDE---RF--TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG-HTDHVSCVAVAVTNKS  208 (392)
Q Consensus       135 d~~~~~~~~~~---~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  208 (392)
                      .+.........   ..  .......+.+ .... +..++=... ..|++.+....+....+.. ....|.+.+..   +.
T Consensus       386 ~~~~~d~~e~~~e~~~~~f~~~~~Tl~~-~~~~-~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~  459 (504)
T PF10433_consen  386 QISEGDDGEEVEEVEEDGFDTDEPTLAA-GNVG-DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DP  459 (504)
T ss_dssp             EES----SSEEEEE---TS-SSS-EEEE-EEET-TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEES---SS
T ss_pred             EEecccCCcchhhhhhccCCCCCCCeEE-EEcC-CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CC
Confidence            55310011111   00  0011112222 2222 334444443 3588888877777766543 33455555554   34


Q ss_pred             EEEEecCCCeEEEEECCCCceeeeec-----ccccceeEEEEcC
Q psy17243        209 LVVSGSKDSNLIVWDMETGGEEHFLA-----GHLGCVTCVKLAG  247 (392)
Q Consensus       209 ~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~  247 (392)
                      +++.+-.++.+..+.+..........     .....|.|+...|
T Consensus       460 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  460 QVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            55555568889999887766543322     1356788877765

...

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=84.07  E-value=24  Score=29.50  Aligned_cols=205  Identities=11%  Similarity=0.001  Sum_probs=108.8

Q ss_pred             ECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeE-E--ecccccceEEEEEecCCCEEEEEeC
Q psy17243         12 QMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS-T--FKSHQSTILAVAVLSDSRRVVTSDK   88 (392)
Q Consensus        12 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~--~~~~~~~v~~~~~~~~~~~l~~~~~   88 (392)
                      |..+++....--+....-..+..-||+..-++-+.. -|.-.|-++.+... .  .+..........|.+.|+.-+++..
T Consensus        89 dP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~  167 (353)
T COG4257          89 DPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI  167 (353)
T ss_pred             CCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecc
Confidence            444454444333334444555566666543332222 23333433332211 1  1122455778889999988888753


Q ss_pred             C---------CeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEE
Q psy17243         89 A---------GVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFT  159 (392)
Q Consensus        89 d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~  159 (392)
                      .         +.|++|+.-.+       .....++..|+|..-++...++.|-..|...... +.+............+-
T Consensus       168 G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriw  239 (353)
T COG4257         168 GAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIW  239 (353)
T ss_pred             ccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccccccc
Confidence            2         23444443322       2346788999999888888888888888765422 22222222223344555


Q ss_pred             EEcCCCEEEEeeCCCcEEEEEcCCCeE-EEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        160 VTWDSQYLITGSRDMSLKVWQVVGGKL-AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       160 ~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      -+|.+..-++....+.+..||..+..- ...+.+.+..-.++... ..+..-.+--..|.|.-+|-++
T Consensus       240 sdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea~agai~rfdpet  306 (353)
T COG4257         240 SDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             cCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeec-cCCcEEeeccccCceeecCccc
Confidence            566777777777778888888765442 12334444444555554 3333333333345565566554

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=83.72  E-value=27  Score=29.95  Aligned_cols=109  Identities=14%  Similarity=0.262  Sum_probs=75.2

Q ss_pred             eeEEEecCCCCeEEEEe------------------CCCeEEEEeCCCCceeEEecc--c--------------------c
Q psy17243         29 VSCVAISPNSIFAVSGS------------------EDNTAKVWGLTLGSVVSTFKS--H--------------------Q   68 (392)
Q Consensus        29 v~~~~~~~~~~~l~~~~------------------~dg~v~iwd~~~~~~~~~~~~--~--------------------~   68 (392)
                      ...+.+.++|..|++.-                  .|+.+..-|+++++.+.+...  |                    .
T Consensus        59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~  138 (299)
T PF14269_consen   59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS  138 (299)
T ss_pred             ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence            45566677777766221                  245566678888887765431  0                    0


Q ss_pred             -----cceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccc-e-------eEEEEeCCCCEEEEecCCCcEEEEe
Q psy17243         69 -----STILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGP-S-------KCLTVTHNMKYIVSGDGDNSLRIWP  135 (392)
Q Consensus        69 -----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~-------~~~~~~~~~~~l~~~~~d~~i~~~d  135 (392)
                           --++++...++|.+|++.-.-..|.+.|..+++.+..+.++ -       ...++-.+-+++-.+..++.|.+||
T Consensus       139 ~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD  218 (299)
T PF14269_consen  139 FPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD  218 (299)
T ss_pred             CCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence                 11677787888999999999999999999999998887765 1       2244444555555567788899998


Q ss_pred             CC
Q psy17243        136 TS  137 (392)
Q Consensus       136 ~~  137 (392)
                      -.
T Consensus       219 N~  220 (299)
T PF14269_consen  219 NA  220 (299)
T ss_pred             CC
Confidence            63

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.41  E-value=11  Score=29.24  Aligned_cols=31  Identities=13%  Similarity=0.183  Sum_probs=23.7

Q ss_pred             ceeEEEEecCC-----CcEEEEecCCCeEEEEECCC
Q psy17243        196 HVSCVAVAVTN-----KSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       196 ~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~  226 (392)
                      .+..++|||.+     +-+|++-..++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            67788999742     45778888899999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>smart00564 PQQ beta-propeller repeat

Probab=83.31  E-value=3.9  Score=21.06  Aligned_cols=25  Identities=32%  Similarity=0.298  Sum_probs=20.5

Q ss_pred             EEEEecCCCeEEEEECCCCceeeee
Q psy17243        209 LVVSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       209 ~l~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                      .++.++.+|.+..+|.++|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5677888999999999999876543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG4460|consensus

Probab=83.29  E-value=16  Score=33.44  Aligned_cols=82  Identities=20%  Similarity=0.099  Sum_probs=51.5

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEe---------CCCCceeE---Eec--------ccccceEEEEEecCC---CEE
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWG---------LTLGSVVS---TFK--------SHQSTILAVAVLSDS---RRV   83 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd---------~~~~~~~~---~~~--------~~~~~v~~~~~~~~~---~~l   83 (392)
                      -.|..+..++.|..++-++.+|.+.++=         +++|+..-   ++.        ...-.+...+|+|+.   ..|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            3567788889999888888888665542         12332211   110        111235667788865   567


Q ss_pred             EEEeCCCeEEEEEcCCceeeeeccc
Q psy17243         84 VTSDKAGVIAVWVADNAQLLYSALG  108 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~~~~~~~~~~~  108 (392)
                      ..-+.|..|++||+.....++...+
T Consensus       184 ~iL~sdnviRiy~lS~~telylqpg  208 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTELYLQPG  208 (741)
T ss_pred             EEEecCcEEEEEecCCcchhhccCC
Confidence            7777888888888877766644443

>KOG1520|consensus

Probab=83.18  E-value=31  Score=30.25  Aligned_cols=100  Identities=10%  Similarity=0.028  Sum_probs=54.7

Q ss_pred             cceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee---ccc----ceeEEEEeCCCCE-----------------EEE
Q psy17243         69 STILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS---ALG----PSKCLTVTHNMKY-----------------IVS  124 (392)
Q Consensus        69 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~----~~~~~~~~~~~~~-----------------l~~  124 (392)
                      +.-..++|...+..|+++..---+...+.+.+.....   ..+    -.+.+.+.+++..                 ++.
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~  194 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALE  194 (376)
T ss_pred             CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeec
Confidence            5567889988887777775544444445554432111   000    1123444443322                 223


Q ss_pred             ecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243        125 GDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus       125 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      +..+|++.-||..+...    +.....-.-.+.++.+||+.+++.+-.
T Consensus       195 g~~~GRl~~YD~~tK~~----~VLld~L~F~NGlaLS~d~sfvl~~Et  238 (376)
T KOG1520|consen  195 GDPTGRLFRYDPSTKVT----KVLLDGLYFPNGLALSPDGSFVLVAET  238 (376)
T ss_pred             CCCccceEEecCcccch----hhhhhcccccccccCCCCCCEEEEEee
Confidence            34567888888753322    222233344577899999998877643

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=82.62  E-value=0.52  Score=22.30  Aligned_cols=10  Identities=20%  Similarity=0.089  Sum_probs=8.2

Q ss_pred             cccccCccCC
Q psy17243        374 RQHSVDTDEL  383 (392)
Q Consensus       374 ~~fspdg~~l  383 (392)
                      -.|||||+++
T Consensus         6 t~FSp~Grl~   15 (23)
T PF10584_consen    6 TTFSPDGRLF   15 (23)
T ss_dssp             TSBBTTSSBH
T ss_pred             eeECCCCeEE
Confidence            4799999975

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=81.90  E-value=8.6  Score=25.68  Aligned_cols=48  Identities=10%  Similarity=0.330  Sum_probs=32.8

Q ss_pred             CeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecC-CCcEEEEeCC
Q psy17243         90 GVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDG-DNSLRIWPTS  137 (392)
Q Consensus        90 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~  137 (392)
                      +.|..||.++.+.+..-....+.+.++|++++|++++. .+.|++|...
T Consensus        36 ~~Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   36 GNVVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             ceEEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            44555665554444444456678999999888887765 5788888764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.03  E-value=16  Score=28.37  Aligned_cols=31  Identities=10%  Similarity=0.071  Sum_probs=25.1

Q ss_pred             cceEEEEEEcCC------CEEEEeeCCCcEEEEEcCC
Q psy17243        153 EEITCFTVTWDS------QYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       153 ~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~~~  183 (392)
                      ..+..++|||.|      -+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999943      3688888999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=80.64  E-value=56  Score=32.36  Aligned_cols=133  Identities=12%  Similarity=0.161  Sum_probs=74.3

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEe-cCCCC--------eEEEEeCCCeEEEEeC----CCCceeE-----Ee
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAI-SPNSI--------FAVSGSEDNTAKVWGL----TLGSVVS-----TF   64 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~~--------~l~~~~~dg~v~iwd~----~~~~~~~-----~~   64 (392)
                      +.|+.+.+|+..++...+.+..-...|..++. -|..+        +|+.+ ....+.++-+    .+++.--     ..
T Consensus        99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vA-T~~e~~ilgvs~d~~T~Els~fnTgl~v  177 (1263)
T COG5308          99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVA-TEKEVMILGVSKDTKTGELSLFNTGLVV  177 (1263)
T ss_pred             EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhh-hhheeeEEEEEeccccceeEEEecceEE
Confidence            46889999999987766666554445555544 22211        22222 2233444422    2222210     11


Q ss_pred             cccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCc--------ee-------------ee------ecccceeEEEEeC
Q psy17243         65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA--------QL-------------LY------SALGPSKCLTVTH  117 (392)
Q Consensus        65 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--------~~-------------~~------~~~~~~~~~~~~~  117 (392)
                      ....-.|.++.-..+|+.+++|-.|  +.+|.+.-.        ++             +.      .+...+..+++..
T Consensus       178 svqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq  255 (1263)
T COG5308         178 SVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ  255 (1263)
T ss_pred             eccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc
Confidence            1123457888888889888888777  666754311        00             00      1112455677777


Q ss_pred             CCCEEEEecCCCcEEEEeCCC
Q psy17243        118 NMKYIVSGDGDNSLRIWPTSP  138 (392)
Q Consensus       118 ~~~~l~~~~~d~~i~~~d~~~  138 (392)
                      ....+.+-.....|+.|.+..
T Consensus       256 sRg~ly~Lr~kS~Vray~itk  276 (1263)
T COG5308         256 SRGLLYVLRKKSAVRAYSITK  276 (1263)
T ss_pred             cccceeeecccceeeeEeeec
Confidence            777777777778888887654

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=80.28  E-value=43  Score=29.89  Aligned_cols=13  Identities=8%  Similarity=0.031  Sum_probs=9.2

Q ss_pred             eEEEEEcCCceee
Q psy17243         91 VIAVWVADNAQLL  103 (392)
Q Consensus        91 ~i~iwd~~~~~~~  103 (392)
                      .+.+||..+.+-.
T Consensus       190 ~v~~YD~~t~~W~  202 (376)
T PRK14131        190 EVLSYDPSTNQWK  202 (376)
T ss_pred             eEEEEECCCCeee
Confidence            5788888776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	392
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-19
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		7e-19
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-14
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-18
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-11
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-18
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-11
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-18
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-18
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		9e-11
2h9l_A	329	Wdr5delta23 Length = 329		4e-18
2h9l_A	329	Wdr5delta23 Length = 329		8e-11
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-18
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		9e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-18
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		8e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-18
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-11
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-18
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-18
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		8e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-18
2g99_A	308	Structural Basis For The Specific Recognition Of Me		9e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-18
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-11
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-18
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-18
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-18
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-18
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-17
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-16
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-16
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		5e-16
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-15
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-15
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-14
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-14
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-13
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-13
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-12
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-07
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-11
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		9e-11
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-10
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-10
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-10
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-10
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-10
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-10
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-10
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		7e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-09
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-09
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-09
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		8e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-09
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		8e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-09
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		8e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-06
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		4e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		5e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		6e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		8e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		9e-04

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 115/274 (41%), Gaps = 36/274 (13%)
Query: 11  WQMNSHELQ------STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           W+   H LQ       T +G    V C+      I  VSG  DNT K+W           
Sbjct: 116 WRCGRHSLQRIHCRSETSKG----VYCLQYDDQKI--VSGLRDNTIKIWDKNTLECKRIL 169
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
             H  ++L +    D R ++T      + VW  +  ++L + +    C  V H   N   
Sbjct: 170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEAVLHLRFNNGM 225
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
           +V+   D S+ +W  +  T     R  V H   +    V +D +Y+++ S D ++KVW  
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNT 283
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
              +  + L GH   ++C+        LVVSGS D+ + +WD+E G     L GH   V 
Sbjct: 284 STCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 340
Query: 242 CVKL--------AGDGTVAMSD----LPPSRPAG 263
           C++         A DG + + D    L P  PAG
Sbjct: 341 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 374

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 14/229 (6%)
Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
           G  D  + VW   + E   T+ GH +TV C+ +    +  VSGS D T +VW +  G  +
Sbjct: 175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV--VSGSRDATLRVWDIETGQCL 232
Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG-PSKCLTVTHNMK 120
                H + +  V    D RRVV+     ++ VW  +    L++  G  ++  ++  +  
Sbjct: 233 HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 290
Query: 121 YIVSGDGDNSLRIW--PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV 178
           ++VSG  D S+R+W   T    H      +++   E+           L++G+ D ++K+
Sbjct: 291 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-------KDNILVSGNADSTVKI 343
Query: 179 WQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
           W +  G+  Q L G   H S V     NK+ V++ S D  + +WD++TG
Sbjct: 344 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 392

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 76/145 (52%), Gaps = 18/145 (12%)
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY----L 167
           CL    N   IVSG  DN+L++W  S  T K   R  V H+  +      W SQ     +
Sbjct: 124 CLQFCGNR--IVSGSDDNTLKVW--SAVTGKC-LRTLVGHTGGV------WSSQMRDNII 172
Query: 168 ITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
           I+GS D +LKVW    G+    L GHT  V C+ +   ++  VVSGS+D+ L VWD+ETG
Sbjct: 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL---HEKRVVSGSRDATLRVWDIETG 229
Query: 228 GEEHFLAGHLGCVTCVKLAGDGTVA 252
              H L GH+  V CV+  G   V+
Sbjct: 230 QCLHVLMGHVAAVRCVQYDGRRVVS 254

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 110 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 169
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 170 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 229
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 230 YILAATLDNTLKLWDYS--KGKCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 285
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 286 YIWNLQTKEIVQKLQGHTDVV 306

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 33  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 89
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 90  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 148
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 149 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 190

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 167
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 168 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 227
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 228 YILAATLDNTLKLWDYS--KGKCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 283
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVV 304

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 31  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 87
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 88  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 146
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 188

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 92  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 212 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 267
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVV 288

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 15  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 71
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 72  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 172

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 89  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 209 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 264
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVV 285

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 95  WVADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH 151
           +V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGH 67
Query: 152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV 211
              I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+V
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 126
Query: 212 SGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           SGS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 103 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 163 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 222
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 223 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 278
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 279 YIWNLQTKEIVQKLQGHTDVV 299

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 26  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 82
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 83  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 141
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 142 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 183

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 89  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 209 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 264
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVV 285

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 95  WVADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH 151
           +V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGH 67
Query: 152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV 211
              I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+V
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 126
Query: 212 SGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           SGS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 92  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 212 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 267
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVV 288

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 15  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 71
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 72  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 172

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 92  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 212 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 267
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVV 288

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 15  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 71
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 72  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 172

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 89  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 209 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 264
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVV 285

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 95  WVADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH 151
           +V  N  L ++  G +K ++    + N +++ +   D  ++IW          E+    H
Sbjct: 11  FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKF---EKTISGH 67
Query: 152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV 211
              I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+V
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 126
Query: 212 SGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           SGS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 91  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 150
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 151 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 210
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 211 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 266
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 267 YIWNLQTKEIVQKLQGHTDVV 287

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 14  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 70
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 71  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 129
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 130 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 171

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 82  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 141
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 142 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 201
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 202 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 257
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 258 YIWNLQTKEIVQKLQGHTDVV 278

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 5   VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 61
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 62  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 120
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 162

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 86  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 206 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 261
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 262 YIWNLQTKEIVQKLQGHTDVV 282

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 9   VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 65
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 66  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 124
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 85  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 144
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 145 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 204
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 205 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 260
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 261 YIWNLQTKEIVQKLQGHTDVV 281

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 8   VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 64
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 65  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 123
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 165

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 86  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 206 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 261
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 262 YIWNLQTKEIVQKLQGHTDVV 282

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 9   VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 65
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 66  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 124
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 87  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 146
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 147 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 206
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 207 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 262
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 263 YIWNLQTKEIVQKLQGHTDVV 283

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L ++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 10  VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 66
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 67  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 125
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 167

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 89  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL 148
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN+L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 209 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNMV 264
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVV 285

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L+++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 12  VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 68
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS 169

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 12/201 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + +W ++S +   T++GH N V C   +P S   VSGS D + ++W +  G  + T 
Sbjct: 89  DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL 148
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
            +H   + AV    D   +V+S   G+  +W   + Q L + +     P   +  + N K
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
           YI++   DN L++W  S    K  + +T  H  E  C    F+VT   +++++GS D  +
Sbjct: 209 YILAATLDNDLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNMV 264
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
            +W +   ++ Q L GHTD V
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVV 285

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 96  VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
           V  N  L+++  G +K ++    + N +++ S   D  ++IW          E+    H 
Sbjct: 12  VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 68
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
             I+    + DS  L++ S D +LK+W V  GK  + L GH+++V C        +L+VS
Sbjct: 69  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           GS D ++ +WD++TG     L  H   V+ V    DG++ +S
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS 169

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 13/248 (5%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  V +W  N   LQ T+ GH ++V  VA SP+     S S+D T K+W    G ++ T 
Sbjct: 78  DKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL 135
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKC---LTVTHNMKY 121
             H S++  VA   D + + ++     + +W   N QLL +  G S     +  + + + 
Sbjct: 136 TGHSSSVWGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQT 194
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
           I S   D ++++W  + Q      +    HS  +     + D Q + + S D ++K+W  
Sbjct: 195 IASASDDKTVKLWNRNGQL----LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 249
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
             G+L Q L GH+  V+ VA     ++ + S S D  + +W+   G     L GH   V 
Sbjct: 250 RNGQLLQTLTGHSSSVNGVAFRPDGQT-IASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 307
Query: 242 CVKLAGDG 249
            V  + DG
Sbjct: 308 GVAFSPDG 315

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 49/238 (20%)
Query: 5   DCLVNVWQMNSHEL-----QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS 59
           D  + +W++   E      Q  + GH + VS V IS +  FA+SGS D T ++W LT G+
Sbjct: 37  DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT 96
Query: 60  VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNM 119
               F  H   +L+VA  SD+R++V+  +   I +W         + LG           
Sbjct: 97  TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW---------NTLGVC--------- 138
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC--FTVTWDSQYLITGSRDMSLK 177
           KY V                    DE    SHSE ++C  F+    +  +++   D  +K
Sbjct: 139 KYTVQ-------------------DE----SHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 178 VWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
           VW +   KL    +GHT +++ V V+  + SL  SG KD   ++WD+  G   + L G
Sbjct: 176 VWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 49/238 (20%)
Query: 5   DCLVNVWQMNSHEL-----QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS 59
           D  + +W++   E      Q  + GH + VS V IS +  FA+SGS D T ++W LT G+
Sbjct: 60  DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT 119
Query: 60  VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNM 119
               F  H   +L+VA  SD+R++V+  +   I +W         + LG           
Sbjct: 120 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW---------NTLGVC--------- 161
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC--FTVTWDSQYLITGSRDMSLK 177
           KY V                    DE    SHSE ++C  F+    +  +++   D  +K
Sbjct: 162 KYTVQ-------------------DE----SHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 178 VWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
           VW +   KL    +GHT +++ V V+  + SL  SG KD   ++WD+  G   + L G
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 44/208 (21%)
Query: 22  MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR 81
           +EGH   VS VA+S N  FAVS S D++ ++W L  G     F  H   +L+VA   D+R
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 82  RVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTH 141
           ++V                                       SG  DN+LR+W    +  
Sbjct: 123 QIV---------------------------------------SGGRDNALRVWNVKGECM 143
Query: 142 KDDERFTVSHSEEITC--FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSC 199
               R   +H++ ++C  F+ + D+  +++G  D  +KVW +  G+L   L GHT++V+ 
Sbjct: 144 HTLSRG--AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTS 201
Query: 200 VAVAVTNKSLVVSGSKDSNLIVWDMETG 227
           V V+  + SL  S  KD    +WD+  G
Sbjct: 202 VTVS-PDGSLCASSDKDGVARLWDLTKG 228

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 83/144 (57%), Gaps = 5/144 (3%)
Query: 113 LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR 172
           + +++N  + VS   D+SLR+W  + Q  +   +F + H++++     + D++ +++G R
Sbjct: 73  VALSNNGNFAVSASWDHSLRLW--NLQNGQCQYKF-LGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 173 DMSLKVWQVVGGKLAQVLVG-HTDHVSCVAVAVT-NKSLVVSGSKDSNLIVWDMETGGEE 230
           D +L+VW V G  +  +  G HTD VSCV  + + +  ++VSG  D+ + VWD+ TG   
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
Query: 231 HFLAGHLGCVTCVKLAGDGTVAMS 254
             L GH   VT V ++ DG++  S
Sbjct: 190 TDLKGHTNYVTSVTVSPDGSLCAS 213

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 22/238 (9%)
Query: 29  VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK 88
           +  V  SP+  F  +G+ED   ++W +    +V   + H+  I ++       ++V+   
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 89  AGVIAVWVADNAQL---LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTS-----PQT 140
              + +W     Q    L    G +       + KYI +G  D ++R+W +       + 
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG------------GKLAQ 188
             ++E  T  H + +     T D Q +++GS D S+K+W +              G    
Sbjct: 246 DSENESGT-GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 189 VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLA 246
             +GH D V  VA    N   ++SGSKD  ++ WD ++G     L GH   V  V +A
Sbjct: 305 TYIGHKDFVLSVAT-TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 42/242 (17%)
Query: 18  LQSTMEGHLNTVSCVAIS-PNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAV 76
           L+ TM  H + V+ +A    N+   VS S D +  +W LT        K  ++  +A   
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLT--------KDDKAYGVAQRR 425
Query: 77  LSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPT 136
           L+     V                            + ++ + ++ +SG  D  LR+W  
Sbjct: 426 LTGHSHFVED--------------------------VVLSSDGQFALSGSWDGELRLWDL 459
Query: 137 SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG---KLAQVLVGH 193
           +        RF V H++++     + D++ +++ SRD ++K+W  +G     +++   GH
Sbjct: 460 AAGVST--RRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH 516
Query: 194 TDHVSCVAVAV-TNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVA 252
            D VSCV  +  T +  +VS S D  + VW++        LAGH G V+ V ++ DG++ 
Sbjct: 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLC 576
Query: 253 MS 254
            S
Sbjct: 577 AS 578

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 106/259 (40%), Gaps = 34/259 (13%)
Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
           D  + VW   + + + T++GH ++V  ++   +     S S D T K+W       + T 
Sbjct: 129 DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188
Query: 65  KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTV---THNMKY 121
             H   + +V+++ +   +V++ +   I +W       + +  G  + + +     +   
Sbjct: 189 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY--------------- 166
           I S   D ++R+W  + +  K + R    H   + C +   +S Y               
Sbjct: 249 IASCSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 167 -----LITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
                L++GSRD ++K+W V  G     LVGH + V  V      K  ++S + D  L V
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRV 364
Query: 222 WDMET-------GGEEHFL 233
           WD +           EHF+
Sbjct: 365 WDYKNKRCMKTLNAHEHFV 383

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 109/278 (39%), Gaps = 69/278 (24%)
Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
           G  D  + V+   + +    + GH   V  +  +   I  VSGS D T +VW +  G   
Sbjct: 138 GADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL-VSGSTDRTVRVWDIKKGCCT 196
Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH--NM 119
             F+ H ST+                                       +CL +    N+
Sbjct: 197 HVFEGHNSTV---------------------------------------RCLDIVEYKNI 217
Query: 120 KYIVSGDGDNSLRIWPTSPQT----HKDDERF-TVSHSEEITCF-------------TVT 161
           KYIV+G  DN+L +W    ++    H ++  +  V H+ E   +             TV+
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS 277
Query: 162 WDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
                +++GS D +L VW V   K   +L GHTD +    +    +   +S S D+ + +
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYS-TIYDHERKRCISASXDTTIRI 336
Query: 222 WDMETGGEEHFLAGHLGCVTCVKL--------AGDGTV 251
           WD+E G   + L GH   V  ++L        A DG++
Sbjct: 337 WDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSI 374

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 48/234 (20%)
Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
           +T + H ++++      D+  V+T      I V+ + N + L    G    +     +KY
Sbjct: 115 TTLRGHXTSVITCLQFEDNY-VITGADDKXIRVYDSINKKFLLQLSGHDGGVWA---LKY 170
Query: 122 -----IVSGDGDNSLRIWPTSPQ--THKDDERFTVSHSEEITCFTVTW--DSQYLITGSR 172
                +VSG  D ++R+W       TH  +      H+  + C  +    + +Y++TGSR
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFE-----GHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 173 DMSLKVWQVV--------GGKLAQVLVGHT------------DHVSCVAVAVTNKSLVVS 212
           D +L VW++         G +    LV HT             H + V     + ++VVS
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVS 285
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVT----------CVKLAGDGTVAMSDL 256
           GS D+ LIVWD+      + L+GH   +           C+  + D T+ + DL
Sbjct: 286 GSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 110/278 (39%), Gaps = 69/278 (24%)
Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
           G  D ++ V+   + +    + GH   V  +  +   I  VSGS D T +VW +  G   
Sbjct: 138 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL-VSGSTDRTVRVWDIKKGCCT 196
Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH--NM 119
             F+ H ST+                                       +CL +    N+
Sbjct: 197 HVFEGHNSTV---------------------------------------RCLDIVEYKNI 217
Query: 120 KYIVSGDGDNSLRIWPTSPQT----HKDDERF-TVSHSEEITCF-------------TVT 161
           KYIV+G  DN+L +W    ++    H ++  +  V H+ E   +             TV+
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 277
Query: 162 WDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
                +++GS D +L VW V   K   +L GHTD +    +    +   +S S D+ + +
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS-TIYDHERKRCISASMDTTIRI 336
Query: 222 WDMETGGEEHFLAGHLGCVTCVKL--------AGDGTV 251
           WD+E G   + L GH   V  ++L        A DG++
Sbjct: 337 WDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSI 374

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 44/232 (18%)
Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK---CLTVTHN 118
           +T + H ++++      D+  V+T     +I V+ + N + L    G       L   H 
Sbjct: 115 TTLRGHMTSVITCLQFEDNY-VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 173
Query: 119 MKYIVSGDGDNSLRIWPTSPQ--THKDDERFTVSHSEEITCFTVTW--DSQYLITGSRDM 174
              +VSG  D ++R+W       TH  +      H+  + C  +    + +Y++TGSRD 
Sbjct: 174 -GILVSGSTDRTVRVWDIKKGCCTHVFE-----GHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 175 SLKVWQVV--------GGKLAQVLVGHT------------DHVSCVAVAVTNKSLVVSGS 214
           +L VW++         G +    LV HT             H++ V     + ++VVSGS
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287
Query: 215 KDSNLIVWDMETGGEEHFLAGHLGCVT----------CVKLAGDGTVAMSDL 256
            D+ LIVWD+      + L+GH   +           C+  + D T+ + DL
Sbjct: 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 28/204 (13%)
Query: 2   GGMDCLVNVWQMNSHEL-------QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWG 54
           G  D  V +W++   E           + GH + VS +A+S  + FA+S S D T ++W 
Sbjct: 45  GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWD 104
Query: 55  LTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---- 110
           L  G+    F  HQS + +VA   D+R+++++     I +W         SA   +    
Sbjct: 105 LRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW 164
Query: 111 -KCLTVTHNMK----------YIVSGDGDNSLRIWPTSPQTHKDDERFTV-SHSEEITCF 158
             C+  +  MK          Y  S   D  L++W T+ Q      R+T  +H   +   
Sbjct: 165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI-----RYTFKAHESNVNHL 219
Query: 159 TVTWDSQYLITGSRDMSLKVWQVV 182
           +++ + +Y+ TG +D  L +W ++
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDIL 243

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 163 DSQYLITGSRDMSLKVWQVVG-------GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK 215
           DS  LI+GSRD ++ +W++         G   + L GH   VS +A++  N    +S S 
Sbjct: 38  DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSW 96
Query: 216 DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLR 269
           D  L +WD+ TG       GH   V  V  + D    +S       AG +R ++
Sbjct: 97  DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS-------AGAEREIK 143

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 117/307 (38%), Gaps = 53/307 (17%)
Query: 2    GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--- 58
            G  D  + +W +N  E ++TM GH N+V+    SP+     S S D T ++W +      
Sbjct: 726  GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Query: 59   ---SVVSTFKSHQSTILAVAVL-------SDSRRVVTSDK----------AGVIA-VWVA 97
               +V   F S +     V V+       +D  +++ + K          +G++A +   
Sbjct: 786  KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 845
Query: 98   DNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC 157
             ++ + Y    P   L V    +Y V         +W    +    D R    H   +  
Sbjct: 846  HHSTIQYCDFSPYDHLAVIALSQYCV--------ELWNIDSRLKVADCR---GHLSWVHG 894
Query: 158  FTVTWDSQYLITGSRDMSLKVWQV--VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK 215
               + D    +T S D +++VW+   V    A VL    D      V   N+++V++   
Sbjct: 895  VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID-----VVFQENETMVLAVDN 949
Query: 216  DSNLIVWDMETGGEEHFLAGHLGCVTC------VKLAG-DGTVAMSDLPPSR----PAGP 264
               L +   +TG  ++     + C         V     DG + + +LP +R      G 
Sbjct: 950  IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH 1009
Query: 265  KRPLRRL 271
            K+ +R +
Sbjct: 1010 KKAVRHI 1016

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
           I S   D +L+++         D +   +H +E+ C   + D  Y+ T S D  +K+W  
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIK---AHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 693
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKS---LVVSGSKDSNLIVWDMETGGEEHFLAGHLG 238
             GKL      H++ V+C     TNKS   L+ +GS D  L +WD+      + + GH  
Sbjct: 694 ATGKLVHTYDEHSEQVNC--CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 751
Query: 239 CVTCVKLAGDGTVAMS 254
            V   + + D  +  S
Sbjct: 752 SVNHCRFSPDDELLAS 767

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 117/307 (38%), Gaps = 53/307 (17%)
Query: 2    GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--- 58
            G  D  + +W +N  E ++TM GH N+V+    SP+     S S D T ++W +      
Sbjct: 719  GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Query: 59   ---SVVSTFKSHQSTILAVAVL-------SDSRRVVTSDK----------AGVIA-VWVA 97
               +V   F S +     V V+       +D  +++ + K          +G++A +   
Sbjct: 779  KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 838
Query: 98   DNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC 157
             ++ + Y    P   L V    +Y V         +W    +    D R    H   +  
Sbjct: 839  HHSTIQYCDFSPYDHLAVIALSQYCV--------ELWNIDSRLKVADCR---GHLSWVHG 887
Query: 158  FTVTWDSQYLITGSRDMSLKVWQV--VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK 215
               + D    +T S D +++VW+   V    A VL    D      V   N+++V++   
Sbjct: 888  VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID-----VVFQENETMVLAVDN 942
Query: 216  DSNLIVWDMETGGEEHFLAGHLGCVTC------VKLAG-DGTVAMSDLPPSR----PAGP 264
               L +   +TG  ++     + C         V     DG + + +LP +R      G 
Sbjct: 943  IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH 1002
Query: 265  KRPLRRL 271
            K+ +R +
Sbjct: 1003 KKAVRHI 1009

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
           I S   D +L+++         D +   +H +E+ C   + D  Y+ T S D  +K+W  
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIK---AHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKS---LVVSGSKDSNLIVWDMETGGEEHFLAGHLG 238
             GKL      H++ V+C     TNKS   L+ +GS D  L +WD+      + + GH  
Sbjct: 687 ATGKLVHTYDEHSEQVNC--CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744
Query: 239 CVTCVKLAGDGTVAMS 254
            V   + + D  +  S
Sbjct: 745 SVNHCRFSPDDELLAS 760

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 58/250 (23%)
Query: 18  LQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLT-----LGSVVSTFKSHQS 69
           L+ T+EGH   V+ +A S   PN +  +S S D T   W LT      G  V +FK H  
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLL--LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 70  TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDN 129
            +                                        C T+T +  Y +S   D 
Sbjct: 67  IV--------------------------------------QDC-TLTADGAYALSASWDK 87
Query: 130 SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV 189
           +LR+W  +  T +  +RF V H  ++    +   +  +I+GSRD ++KVW + G  LA  
Sbjct: 88  TLRLWDVA--TGETYQRF-VGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLA-T 143
Query: 190 LVGHTDHVSCVAVAVTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK 244
           L+GH D VS V V    K+      ++S   D  +  W++     E    GH   +  + 
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 245 LAGDGTVAMS 254
            + DGT+  S
Sbjct: 204 ASPDGTLIAS 213

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 106/258 (41%), Gaps = 61/258 (23%)
Query: 13  MNSHE---LQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLT-----LGSVV 61
           M S+E   L+ T+EGH   V+ +A S   PN +  +S S D T   W LT      G  V
Sbjct: 1   MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLL--LSASRDKTLISWKLTGDDQKFGVPV 58
Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
            +FK H   +                                        C T+T +  Y
Sbjct: 59  RSFKGHSHIV--------------------------------------QDC-TLTADGAY 79
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
            +S   D +LR+W  +  T +  +RF V H  ++    +   +  +I+GSRD ++KVW +
Sbjct: 80  ALSASWDKTLRLWDVA--TGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGH 236
            G  LA  L+GH D VS V V    K+      ++S   D  +  W++     E    GH
Sbjct: 137 KGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 237 LGCVTCVKLAGDGTVAMS 254
              +  +  + DGT+  S
Sbjct: 196 NSNINTLTASPDGTLIAS 213

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 58/250 (23%)
Query: 18  LQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLT-----LGSVVSTFKSHQS 69
           L+ T+EGH   V+ +A S   PN +  +S S D T   W LT      G  V +FK H  
Sbjct: 3   LRGTLEGHNGWVTSLATSAGQPNLL--LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 70  TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDN 129
            +                                        C T+T +  Y +S   D 
Sbjct: 61  IV--------------------------------------QDC-TLTADGAYALSASWDK 81
Query: 130 SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV 189
           +LR+W  +  T +  +RF V H  ++    +   +  +I+GSRD ++KVW + G  LA  
Sbjct: 82  TLRLWDVA--TGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-T 137
Query: 190 LVGHTDHVSCVAVAVTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK 244
           L+GH D VS V V    K+      ++S   D  +  W++     E    GH   +  + 
Sbjct: 138 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 197
Query: 245 LAGDGTVAMS 254
            + DGT+  S
Sbjct: 198 ASPDGTLIAS 207

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 106/258 (41%), Gaps = 61/258 (23%)
Query: 13  MNSHE---LQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLT-----LGSVV 61
           M S+E   L+ T+EGH   V+ +A S   PN +  +S S D T   W LT      G  V
Sbjct: 1   MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLL--LSASRDKTLISWKLTGDDQKFGVPV 58
Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
            +FK H   +                                        C T+T +  Y
Sbjct: 59  RSFKGHSHIV--------------------------------------QDC-TLTADGAY 79
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
            +S   D +LR+W  +  T +  +RF V H  ++    +   +  +I+GSRD ++KVW +
Sbjct: 80  ALSASWDKTLRLWDVA--TGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGH 236
            G  LA  L+GH D VS V V    K+      ++S   D  +  W++     E    GH
Sbjct: 137 KGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 237 LGCVTCVKLAGDGTVAMS 254
              +  +  + DGT+  S
Sbjct: 196 NSNINTLTASPDGTLIAS 213

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 58/250 (23%)
Query: 18  LQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLT-----LGSVVSTFKSHQS 69
           L+ T+EGH   V+ +A S   PN +  +S S D T   W LT      G  V +FK H  
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLL--LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 70  TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDN 129
            +                                        C T+T +  Y +S   D 
Sbjct: 67  IV--------------------------------------QDC-TLTADGAYALSASWDK 87
Query: 130 SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV 189
           +LR+W  +  T +  +RF V H  ++    +   +  +I+GSRD ++KVW + G  LA  
Sbjct: 88  TLRLWDVA--TGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-T 143
Query: 190 LVGHTDHVSCVAVAVTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK 244
           L+GH D VS V V    K+      ++S   D  +  W++     E    GH   +  + 
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 245 LAGDGTVAMS 254
            + DGT+  S
Sbjct: 204 ASPDGTLIAS 213

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 58/250 (23%)
Query: 18  LQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLT-----LGSVVSTFKSHQS 69
           L+ T+EGH   V+ +A S   PN +  +S S D T   W LT      G  V +FK H  
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLL--LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 70  TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDN 129
            +                                        C T+T +  Y +S   D 
Sbjct: 67  IV--------------------------------------QDC-TLTADGAYALSASWDK 87
Query: 130 SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV 189
           +LR+W  +  T +  +RF V H  ++    +   +  +I+GSRD ++KVW + G  LA  
Sbjct: 88  TLRLWDVA--TGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-T 143
Query: 190 LVGHTDHVSCVAVAVTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK 244
           L+GH D VS V V    K+      ++S   D  +  W++     E    GH   +  + 
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 245 LAGDGTVAMS 254
            + DGT+  S
Sbjct: 204 ASPDGTLIAS 213

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 114/260 (43%), Gaps = 13/260 (5%)
Query: 2   GGMDCLVNVWQMNSH--ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS 59
           G +D LV VW+      +LQ ++EGH   V  V IS     A S S D   ++W L  G 
Sbjct: 54  GSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK 113
Query: 60  VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK-CLTVTH- 117
            + +  +       +A   DS+ + T    G + ++  ++ +  YS     K  L++ + 
Sbjct: 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173
Query: 118 -NMKYIVSGDGDNSLRIW--PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM 174
            + KY+ SG  D  + I+   T    H  +      H+  I   T + DSQ L+T S D 
Sbjct: 174 PDGKYLASGAIDGIINIFDIATGKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDDG 228
Query: 175 SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA 234
            +K++ V    LA  L GH   V  VA    +   V S S   ++ VWD+ T    H   
Sbjct: 229 YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD-KSVKVWDVGTRTCVHTFF 287
Query: 235 GHLGCVTCVKLAGDGTVAMS 254
            H   V  VK  G+G+  +S
Sbjct: 288 DHQDQVWGVKYNGNGSKIVS 307

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 48/248 (19%)
Query: 1   MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-S 59
           +G  D  + V+  N+ E     E H + +  +A+ P   + +SGS+D T K+W      +
Sbjct: 72  VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 60  VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNM 119
           +  TF+ H+  ++ VA                            ++   PS         
Sbjct: 132 LEQTFEGHEHFVMCVA----------------------------FNPKDPST-------- 155
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW----DSQYLITGSRDMS 175
               SG  D ++++W     T      FT++  +E     V +    D  Y+IT S D++
Sbjct: 156 --FASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
           +K+W          L GH  +VS  AV      +++SGS+D  L +W+  T   E  L  
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 236 HLGCVTCV 243
            L    C+
Sbjct: 269 GLERSWCI 276

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 25/215 (11%)
Query: 63  TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW--VADNAQ---------LLYSALGPSK 111
           T K H + +L +    D RR+V+S + G + VW     N +         ++  A  PS 
Sbjct: 59  TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKD---DERFTVSHSEEITCFTVTWDSQYLI 168
           C         I  G  DN   ++P +   +++    ++    H+  ++  + T     ++
Sbjct: 119 CA--------IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQIL 170
Query: 169 TGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNK-SLVVSGSKDSNLIVWDMETG 227
           T S D +  +W V  G+L Q   GH   V C+ +A +   +  VSG  D   +VWDM +G
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 228 GEEHFLAGHLGCVTCVKL--AGDGTVAMSDLPPSR 260
                   H   V  V+   +GD   + SD    R
Sbjct: 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 48/231 (20%)
Query: 1   MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-S 59
           +G  D  + V+  N+ E     E H + +  +A+ P   + +SGS+D T K+W      +
Sbjct: 72  VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 60  VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNM 119
           +  TF+ H+  ++ VA                            ++   PS         
Sbjct: 132 LEQTFEGHEHFVMCVA----------------------------FNPKDPST-------- 155
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW----DSQYLITGSRDMS 175
               SG  D ++++W     T      FT++  +E     V +    D  Y+IT S D++
Sbjct: 156 --FASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET 226
           +K+W          L GH  +VS  AV      +++SGS+D  L +W+  T
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSST 259

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 48/248 (19%)
Query: 1   MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-S 59
           +G  D  + V+  N+ E     E H + +  +A+ P   + +SGS+D T K+W      +
Sbjct: 72  VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 60  VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNM 119
           +  TF+ H+  ++ VA                            ++   PS         
Sbjct: 132 LEQTFEGHEHFVMCVA----------------------------FNPKDPST-------- 155
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW----DSQYLITGSRDMS 175
               SG  D ++++W     T      FT++  +E     V +    D  Y+IT S D++
Sbjct: 156 --FASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
           +K+W          L GH  +VS  AV      +++SGS+D  L +W+  T   E  L  
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 236 HLGCVTCV 243
            L    C+
Sbjct: 269 GLERSWCI 276

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 18/233 (7%)
Query: 2   GGMDCLVNVWQMNSHE----LQSTMEGHLNTVSCVA-ISPNSIFAVSGSEDNTAKVWGLT 56
           GG+D + +++ + + E    +   + GH   +SC   +  N I   SG  D T  +W + 
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIE 172
Query: 57  LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCL 113
            G   +TF  H   ++++++  D+R  V+        +W         +  G       +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE---EITCFTVTWDSQYLITG 170
               N     +G  D + R++        D E  T SH      IT  + +   + L+ G
Sbjct: 233 CFFPNGNAFATGSDDATCRLF----DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 171 SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
             D +  VW  +    A VL GH + VSC+ V   +   V +GS DS L +W+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 63  TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-LGPSKCLTVTH--NM 119
           T + H + I A+   +DSR ++++ + G + +W +     +++  L  S  +T  +  + 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFT---VSHSEEITCFTVTWDSQYLITGSRDMSL 176
            Y+  G  DN   I+  + +T + + R +     H+  ++C     D+Q ++T S D + 
Sbjct: 110 NYVACGGLDNICSIY--NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
            +W +  G+      GHT  V  +++A   + L VSG+ D++  +WD+  G       GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGH 225

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 18/233 (7%)
Query: 2   GGMDCLVNVWQMNSHE----LQSTMEGHLNTVSCVA-ISPNSIFAVSGSEDNTAKVWGLT 56
           GG+D + +++ + + E    +   + GH   +SC   +  N I   SG  D T  +W + 
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIE 172
Query: 57  LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCL 113
            G   +TF  H   ++++++  D+R  V+        +W         +  G       +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE---EITCFTVTWDSQYLITG 170
               N     +G  D + R++        D E  T SH      IT  + +   + L+ G
Sbjct: 233 CFFPNGNAFATGSDDATCRLF----DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 171 SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
             D +  VW  +    A VL GH + VSC+ V   +   V +GS DS L +W+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 63  TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-LGPSKCLTVTH--NM 119
           T + H + I A+   +DSR ++++ + G + +W +     +++  L  S  +T  +  + 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFT---VSHSEEITCFTVTWDSQYLITGSRDMSL 176
            Y+  G  DN   I+  + +T + + R +     H+  ++C     D+Q ++T S D + 
Sbjct: 110 NYVACGGLDNICSIY--NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
            +W +  G+      GHT  V  +++A   + L VSG+ D++  +WD+  G       GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGH 225

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 18/233 (7%)
Query: 2   GGMDCLVNVWQMNSHE----LQSTMEGHLNTVSCVA-ISPNSIFAVSGSEDNTAKVWGLT 56
           GG+D + +++ + + E    +   + GH   +SC   +  N I   SG  D T  +W + 
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIE 172
Query: 57  LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCL 113
            G   +TF  H   ++++++  D+R  V+        +W         +  G       +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE---EITCFTVTWDSQYLITG 170
               N     +G  D + R++        D E  T SH      IT  + +   + L+ G
Sbjct: 233 CFFPNGNAFATGSDDATCRLF----DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 171 SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
             D +  VW  +    A VL GH + VSC+ V   +   V +GS DS L +W+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 63  TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-LGPSKCLTVTH--NM 119
           T + H + I A+   +DSR +V++ + G + +W +     +++  L  S  +T  +  + 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFT---VSHSEEITCFTVTWDSQYLITGSRDMSL 176
            Y+  G  DN   I+  + +T + + R +     H+  ++C     D+Q ++T S D + 
Sbjct: 110 NYVACGGLDNICSIY--NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
            +W +  G+      GHT  V  +++A   + L VSG+ D++  +WD+  G       GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGH 225

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 18/233 (7%)
Query: 2   GGMDCLVNVWQMNSHE----LQSTMEGHLNTVSCVA-ISPNSIFAVSGSEDNTAKVWGLT 56
           GG+D + +++ + + E    +   + GH   +SC   +  N I   SG  D T  +W + 
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIE 172
Query: 57  LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCL 113
            G   +TF  H   ++++++  D+R  V+        +W         +  G       +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE---EITCFTVTWDSQYLITG 170
               N     +G  D + R++        D E  T SH      IT  + +   + L+ G
Sbjct: 233 CFFPNGNAFATGSDDATCRLF----DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 171 SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
             D +  VW  +    A VL GH + VSC+ V   +   V +GS DS L +W+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 63  TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-LGPSKCLTVTH--NM 119
           T + H + I A+   +DSR +V++ + G + +W +     +++  L  S  +T  +  + 
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFT---VSHSEEITCFTVTWDSQYLITGSRDMSL 176
            Y+  G  DN   I+  + +T + + R +     H+  ++C     D+Q ++T S D + 
Sbjct: 110 NYVACGGLDNICSIY--NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
            +W +  G+      GHT  V  +++A   + L VSG+ D++  +WD+  G       GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGH 225

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 18/233 (7%)
Query: 2   GGMDCLVNVWQMNSHE----LQSTMEGHLNTVSCVA-ISPNSIFAVSGSEDNTAKVWGLT 56
           GG+D + +++ + + E    +   + GH   +SC   +  N I   SG  D T  +W + 
Sbjct: 126 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIE 183
Query: 57  LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCL 113
            G   +TF  H   ++++++  D+R  V+        +W         +  G       +
Sbjct: 184 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 243
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE---EITCFTVTWDSQYLITG 170
               N     +G  D + R++        D E  T SH      IT  + +   + L+ G
Sbjct: 244 CFFPNGNAFATGSDDATCRLF----DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 299
Query: 171 SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
             D +  VW  +    A VL GH + VSC+ V   +   V +GS DS L +W+
Sbjct: 300 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 351

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 63  TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-LGPSKCLTVTH--NM 119
           T + H + I A+   +DSR +V++ + G + +W +     +++  L  S  +T  +  + 
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFT---VSHSEEITCFTVTWDSQYLITGSRDMSL 176
            Y+  G  DN   I+  + +T + + R +     H+  ++C     D+Q ++T S D + 
Sbjct: 121 NYVACGGLDNICSIY--NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 177
Query: 177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
            +W +  G+      GHT  V  +++A   + L VSG+ D++  +WD+  G       GH
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGH 236

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 14/211 (6%)
Query: 42  VSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ 101
           + GS+D   +V+    G  V  F++H   I ++AV      V++      + +W  +N  
Sbjct: 71  IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Query: 102 LLYSALGPSK--CLTVTHNMK---YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT 156
            L       +   + V  N K      SG  D ++++W     T      FT++  +E  
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERG 186
Query: 157 CFTVTW----DSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
              V +    D  Y+IT S D+++K+W          L GH  +VS  AV      +++S
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS-FAVFHPTLPIIIS 245
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCV 243
           GS+D  L +W+  T   E  L   L    C+
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKL 186
           D  L IW T   T         +H+ E+ C +    S++++ TGS D ++ +W +   KL
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 187 A-QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE 230
                  H D +  V  +  N++++ S   D  L VWD+   GEE
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE 355

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKL 186
           D  L IW T   T         +H+ E+ C +    S++++ TGS D ++ +W +   KL
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 187 A-QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE 230
                  H D +  V  +  N++++ S   D  L VWD+   GEE
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE 355

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 30/209 (14%)
Query: 63  TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ-----------LLYSALGPSK 111
           T + H   + ++    +   +V++ + G + VW A  +Q           ++  A  P  
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-- 118
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE----RFTVSHSEEIT-CFTVTWDSQY 166
                 N + +  G  D++  I+  S Q  +D      R    H    + C  V      
Sbjct: 119 ------NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 167 LITGSRDMSLKVWQVVGGKLAQVL-----VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
           LITGS D +  +W V  G+   +       GHT  V  +++   N ++ +SGS D+ + +
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 222 WDME-TGGEEHFLAGHLGCVTCVKLAGDG 249
           WD+  T        GH G +  VK   DG
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDG 261

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 34/227 (14%)
Query: 27  NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTS 86
           N V+C+A S +    V+G E+   ++W  T G++++    H++ I++V    D   +++ 
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKT-GALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 87  DKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER 146
           D   V  +W                 ++ T    + +   G +S+     + + H  D  
Sbjct: 168 DVENVTILW---------------NVISGTVMQHFELKETGGSSI-----NAENHSGDGS 207
Query: 147 FTVSHSEEITCFTVTW--DSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAV 204
             V          V W  D +++I G +  ++ V+Q+        L+GH   +S +    
Sbjct: 208 LGVD---------VEWVDDDKFVIPGPKG-AIFVYQITEKTPTGKLIGHHGPISVLEFND 257
Query: 205 TNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTV 251
           TNK L++S S D  L +W    G  ++   GH   +      GD  V
Sbjct: 258 TNK-LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKV 303

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 39/247 (15%)
Query: 22  MEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
           + GH      ++ +PN + + +S S+D+T  +W +      +T K H+        + D+
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-----ATPKEHR--------VIDA 223
Query: 81  RRVVTSDKAGVIAV-WVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ 139
           + + T   A V  V W      LL+ +L  S                 D  L IW T   
Sbjct: 224 KNIFTGHTAVVEDVAW-----HLLHESLFGSVA--------------DDQKLMIWDTRNN 264
Query: 140 THKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKLA-QVLVGHTDHV 197
                     +H+ E+ C +    S++++ TGS D ++ +W +   KL       H D +
Sbjct: 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 324
Query: 198 SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA-GHLGCVTCVKLAGDGTVAMSDL 256
             V  +  N++++ S   D  L VWD+   GEE        G    + + G  T  +SD 
Sbjct: 325 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 384
Query: 257 P--PSRP 261
              P+ P
Sbjct: 385 SWNPNEP 391

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 11/179 (6%)
Query: 8   VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH 67
           + VW +++  L    +GH +  SC+ IS +     +G  DNT + W L  G  +      
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDF 223
Query: 68  QSTILAVAVLSDSRRV---VTSDKAGVIAVWVADNAQL-LYSALGPSKCLTVTHNMKYIV 123
            S I ++        +   + S    V+ V   D  QL L+ +   S  L   +  K+ V
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS--LKFAYCGKWFV 281
Query: 124 SGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV 182
           S   DN L  W    +T      F    S  +    ++ D +Y++TGS D    V++V+
Sbjct: 282 STGKDNLLNAW----RTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 39/247 (15%)
Query: 22  MEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
           + GH      ++ +PN + + +S S+D+T  +W +      +T K H+        + D+
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-----ATPKEHR--------VIDA 225
Query: 81  RRVVTSDKAGVIAV-WVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ 139
           + + T   A V  V W      LL+ +L  S                 D  L IW T   
Sbjct: 226 KNIFTGHTAVVEDVAW-----HLLHESLFGSVA--------------DDQKLMIWDTRNN 266
Query: 140 THKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKLA-QVLVGHTDHV 197
                     +H+ E+ C +    S++++ TGS D ++ +W +   KL       H D +
Sbjct: 267 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 326
Query: 198 SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA-GHLGCVTCVKLAGDGTVAMSDL 256
             V  +  N++++ S   D  L VWD+   GEE        G    + + G  T  +SD 
Sbjct: 327 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 386
Query: 257 P--PSRP 261
              P+ P
Sbjct: 387 SWNPNEP 393

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 36/213 (16%)
Query: 22  MEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
           + GH      ++ +PN + + +S S+D+T  +W +      +T K H+        + D+
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-----ATPKEHR--------VIDA 227
Query: 81  RRVVTSDKAGVIAV-WVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ 139
           + + T   A V  V W      LL+ +L  S                 D  L IW T   
Sbjct: 228 KNIFTGHTAVVEDVAW-----HLLHESLFGSVA--------------DDQKLMIWDTRNN 268
Query: 140 THKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKLA-QVLVGHTDHV 197
                     +H+ E+ C +    S++++ TGS D ++ +W +   KL       H D +
Sbjct: 269 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 328
Query: 198 SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE 230
             V  +  N++++ S   D  L VWD+   GEE
Sbjct: 329 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 361

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKL 186
           D  L IW T             +H+ E+ C +    S++++ TGS D ++ +W +   KL
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 308
Query: 187 A-QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE 230
                  H D +  V  +  N++++ S   D  L VWD+   GEE
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEE 353

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Query: 120 KYIVSGDGDNSLRIWPTSPQTHK--DDERFTVSHSEEITCFTVTWDSQYLITG--SRDMS 175
           +++ SG  DN + +WP++P        + FT             W S  L TG  + D  
Sbjct: 254 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 313
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
           +++W V  G     +  H+   S +      + +   G   + L++W   T  +   L G
Sbjct: 314 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 373
Query: 236 HLGCVTCVKLAGDGTVAMS 254
           H   V  + ++ DG    S
Sbjct: 374 HTSRVLSLTMSPDGATVAS 392

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Query: 120 KYIVSGDGDNSLRIWPTSPQTHK--DDERFTVSHSEEITCFTVTWDSQYLITG--SRDMS 175
           +++ SG  DN + +WP++P        + FT             W S  L TG  + D  
Sbjct: 243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 302
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
           +++W V  G     +  H+   S +      + +   G   + L++W   T  +   L G
Sbjct: 303 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 362
Query: 236 HLGCVTCVKLAGDGTVAMS 254
           H   V  + ++ DG    S
Sbjct: 363 HTSRVLSLTMSPDGATVAS 381

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW---DSQYLI 168
           C      M  I    G  +  + P   +T + D+   +          + W   +   + 
Sbjct: 40  CAVNPKFMALIXEASGGGAFLVLPLG-KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIA 98
Query: 169 TGSRDMSLKVWQVVGGKLAQ-------VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
           +GS D ++ VW++  G L          L GHT  V  VA   T +++++S   D+ ++V
Sbjct: 99  SGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILV 158
Query: 222 WDMETG 227
           WD+ TG
Sbjct: 159 WDVGTG 164

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 45/199 (22%)
Query: 30  SCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS--HQSTILAVAVLSDSRRVVTSD 87
           SCVA+S +  F   G +D+   V+ L+ G+ VS  K+  H + I +VA  ++   +V +D
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLS-GASVSEVKTIVHPAEITSVAFSNNGAFLVATD 510
Query: 88  KA-GVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER 146
           ++  VI   VA+N +L                                      H +   
Sbjct: 511 QSRKVIPYSVANNFEL-------------------------------------AHTNSWT 533
Query: 147 FTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV-AVAVT 205
           F   H+ ++ C + + D+  L TGS D S+ VW +       +++     +S V +V   
Sbjct: 534 F---HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590
Query: 206 NKSLVVSGSKDSNLIVWDM 224
           N++ +VS  +DSN+  W++
Sbjct: 591 NETTIVSAGQDSNIKFWNV 609

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLV 210
           H + ++  +V       ++GS+D+ +KVW +    +      H   V+CVA +    S+ 
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 211 VSGSKDSNLIVWDMETGGEEHFLAGHLGC 239
           +S S+D+ +++WD          A  +GC
Sbjct: 186 LSCSEDNRILLWDTRCPKP----ASQIGC 210

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Query: 120 KYIVSGDGDNSLRIWPTSPQTHK--DDERFTVSHSEEITCFTVTWDSQYLITG--SRDMS 175
           +++ SG  DN + +WP++P        + FT             W S  L TG  + D  
Sbjct: 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 222
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
           +++W V  G     +  H+   S +      + +   G   + L++W   T  +   L G
Sbjct: 223 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 282
Query: 236 HLGCVTCVKLAGDGTVAMS 254
           H   V  + ++ DG    S
Sbjct: 283 HTSRVLSLTMSPDGATVAS 301

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW---DSQYLI 168
           C      M  I    G  +  + P   +T + D+   +          + W   +   + 
Sbjct: 40  CAVNPKFMALICEASGGGAFLVLPLG-KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIA 98
Query: 169 TGSRDMSLKVWQVVGGKLAQ-------VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
           +GS D ++ VW++  G L          L GHT  V  VA   T +++++S   D+ ++V
Sbjct: 99  SGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV 158
Query: 222 WDMETG 227
           WD+ TG
Sbjct: 159 WDVGTG 164

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 115/295 (38%), Gaps = 40/295 (13%)
Query: 13  MNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT---LGSVVSTFKSHQS 69
              ++L +T++GH   V  V    +S  A S S D T ++W      LG+VV T    Q 
Sbjct: 5   FTGYQLSATLKGHDQDVRDVVAVDDSKVA-SVSRDGTVRLWSKDDQWLGTVVYT---GQG 60
Query: 70  TILAVAVLSDSRRVVTSDKAGVI---AVWVADNAQLLYSALG-PSKCLTVTHNMKYIVSG 125
            + +V   S+   ++   K   I    ++       LY+ +G      +++     ++SG
Sbjct: 61  FLNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISG 120
Query: 126 DGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK 185
             D + ++W      +         ++       V++     +T S D ++K+WQ    K
Sbjct: 121 SWDKTAKVWKEGSLVY----NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDK 174
Query: 186 LAQVLVG-HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK 244
           + +   G H D V    +AV +    +S S D  + + D  TG       GH   V C+K
Sbjct: 175 VIKTFSGIHNDVVR--HLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIK 232
Query: 245 LAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAV 299
           L  +G +           G  R +R             W ++ G L   I + A+
Sbjct: 233 LLPNGDIV--------SCGEDRTVR------------IWSKENGSLKQVITLPAI 267

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLV 210
           H + +   +V  D    ++G +D S+KVW +    + +    H+  V+CVA      ++ 
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 211 VSGSKDSNLIVWD 223
           +S  +D  +++WD
Sbjct: 198 LSCGEDGRILLWD 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.79
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.77
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.76
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.73
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.71
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.66
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.66
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.65
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.63
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.61
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.61
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.61
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.53
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.52
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.52
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.5
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.49
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.48
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.46
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.45
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.44
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.43
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.4
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.39
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.35
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.34
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.34
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.32
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.31
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.31
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.31
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.3
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.28
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.26
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.26
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.21
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.21
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.14
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.13
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.13
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.11
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.09
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.03
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.03
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.01
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.98
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.97
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.94
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.94
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.93
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.93
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.92
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.9
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.85
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.83
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.82
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.8
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.8
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.73
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.73
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.72
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.72
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.72
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.71
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.64
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.62
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.61
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.61
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.6
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.6
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.59
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.56
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.55
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.54
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.53
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.51
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.49
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.48
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.48
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.44
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.42
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.36
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.34
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.29
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.28
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.28
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.25
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.2
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.04
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.95
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.89
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.89
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.89
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.86
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.85
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.83
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.64
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.62
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.61
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.59
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.58
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.56
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.54
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.47
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.47
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.42
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.4
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.39
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.32
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.31
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.3
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.3
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.3
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.3
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.27
3ott_A	758	Two-component system sensor histidine kinase; beta	97.21
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.18
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.01
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.95
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.88
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.6
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.59
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.58
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.47
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.38
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.31
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.24
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.08
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.07
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.79
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.77
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.74
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.71
3ott_A	758	Two-component system sensor histidine kinase; beta	95.65
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.54
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.49
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.02
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.11
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.49
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.48
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	90.2
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	89.54
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	89.3
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	89.26
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	88.33
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	85.96
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	85.08
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	84.7
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.6

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-50  Score=380.58  Aligned_cols=381  Identities=13%  Similarity=0.140  Sum_probs=290.1

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc--eeEEecccccceEEEEEecCCC
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      .++.|++|++.+++....+.+|...|++++|+|+|++||+|+.|++|+|||+.+++  ....+..|.++|.+++|+|+++
T Consensus        37 ~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~  116 (611)
T 1nr0_A           37 NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK  116 (611)
T ss_dssp             ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             CCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC
Confidence            35799999999999999999999999999999999999999999999999997543  4567888999999999999999


Q ss_pred             EEEEEeCC----CeEEEEEcCCce-eeeecccceeEEEEeCCCC-EEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         82 RVVTSDKA----GVIAVWVADNAQ-LLYSALGPSKCLTVTHNMK-YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        82 ~l~~~~~d----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      .|++++.+    +.|++||..+.. .+..+...+.+++|+|++. .|++++.|+.|++||....   .......+|...|
T Consensus       117 ~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~---~~~~~l~~H~~~V  193 (611)
T 1nr0_A          117 RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFV  193 (611)
T ss_dssp             EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCE
T ss_pred             EEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC---eEeeeeccccCce
Confidence            99998875    478888753321 2334556889999999987 6999999999999998632   3334456799999


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe-------cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV-------GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      .+++|+|++++|++++.|++|++||+.+++.+..+.       +|...|.+++|+ +++.+|++++.|++|++||+.+++
T Consensus       194 ~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~s~s~D~~v~lWd~~~~~  272 (611)
T 1nr0_A          194 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLK  272 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCc
Confidence            999999999999999999999999999999888874       799999999999 688899999999999999999876


Q ss_pred             eee-------------------------------------------eecccccceeEEEEcCCCeEEEEcCCCCCCCCCC
Q psy17243        229 EEH-------------------------------------------FLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPK  265 (392)
Q Consensus       229 ~~~-------------------------------------------~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~  265 (392)
                      ++.                                           .+.+|...|.+++|+|||++++++..++....+.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd  352 (611)
T 1nr0_A          273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD  352 (611)
T ss_dssp             EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence            543                                           3347888999999999999999887665432211


Q ss_pred             Ccccc-----------------------ccccccccceeEEEeccCC-------------ccee----------------
Q psy17243        266 RPLRR-----------------------LLKKEVSLDTYTWQRKYGH-------------LTSS----------------  293 (392)
Q Consensus       266 ~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-------------~~~~----------------  293 (392)
                      .....                       +...........|....+.             .+..                
T Consensus       353 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~  432 (611)
T 1nr0_A          353 ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK  432 (611)
T ss_dssp             TTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS
T ss_pred             CCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCc
Confidence            10000                       0000000001111100000             0000                


Q ss_pred             ----------------EEEeecccccceeEEEeeccccceecceeccC--------CCC------CCChhhhhhhcccCh
Q psy17243        294 ----------------IMMAAVDERLKRRFSVSASMEEISKIPIKDNV--------GSQ------GLGPEQAALAQSQHF  343 (392)
Q Consensus       294 ----------------~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~--------~~~------~~s~dg~~la~s~~~  343 (392)
                                      .........++++++++++.|+++++|.....        ++.      +|||||++|| +++.
T Consensus       433 ~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~la-s~s~  511 (611)
T 1nr0_A          433 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV-ATDQ  511 (611)
T ss_dssp             EEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE-EEET
T ss_pred             eEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEE-EEcC
Confidence                            00122344678999999999999999975421        222      8999999999 9999


Q ss_pred             HHHHHHhhCCCCCCccccccccc-cccCccccccccCccCCCCccccc
Q psy17243        344 DQLEALWNKKSPPRSRRFEHSMS-KQNSYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       344 d~~i~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~fspdg~~l~~~~~d~  390 (392)
                      |++|++||+.++..... ..... +...+.+++|||||++||+|+.|.
T Consensus       512 d~~v~~w~~~~~~~~~~-~~~~~~H~~~V~~v~fspdg~~lasgs~D~  558 (611)
T 1nr0_A          512 SRKVIPYSVANNFELAH-TNSWTFHTAKVACVSWSPDNVRLATGSLDN  558 (611)
T ss_dssp             TSCEEEEEGGGTTEESC-CCCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCEEEEEcCCCCceee-eeeeeecccceeEEEECCCCCEEEEEECCC
Confidence            99999999987332111 11122 556688899999999999998874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.2e-49  Score=369.11  Aligned_cols=381  Identities=14%  Similarity=0.190  Sum_probs=282.1

Q ss_pred             CCccCCeEEEEECCCcc--ceeeeccCCcCeeEEEecCCCCeEEEEeCC----CeEEEEeCCCCceeEEecccccceEEE
Q psy17243          1 MGGMDCLVNVWQMNSHE--LQSTMEGHLNTVSCVAISPNSIFAVSGSED----NTAKVWGLTLGSVVSTFKSHQSTILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~~   74 (392)
                      +|+.||+|+|||+.+++  ....+.+|..+|.+++|+|++++|++++.+    +.|++||  .++....+.+|...|.++
T Consensus        76 sg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v  153 (611)
T 1nr0_A           76 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSV  153 (611)
T ss_dssp             EEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEE
T ss_pred             EEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEE
Confidence            57889999999997543  455788899999999999999999998865    4677776  567778889999999999


Q ss_pred             EEecCCC-EEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcce----
Q psy17243         75 AVLSDSR-RVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER----  146 (392)
Q Consensus        75 ~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----  146 (392)
                      +|+|++. .|++++.|++|++||..+++.+..+   ...+.+++|+|++++|++++.|+.|++||+.++.......    
T Consensus       154 ~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~  233 (611)
T 1nr0_A          154 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL  233 (611)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred             EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence            9999987 6999999999999999988766544   4578999999999999999999999999987543321110    


Q ss_pred             eeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEE-------------------------------------
Q psy17243        147 FTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV-------------------------------------  189 (392)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------------------------------  189 (392)
                      ...+|...|.+++|+|++++|++++.|++|++||+++++++..                                     
T Consensus       234 ~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~  313 (611)
T 1nr0_A          234 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL  313 (611)
T ss_dssp             SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred             cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence            0116889999999999999999999999999999988765433                                     


Q ss_pred             ------EecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee-cccccceeEEEEcCCCeEEEEcCCC----
Q psy17243        190 ------LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL-AGHLGCVTCVKLAGDGTVAMSDLPP----  258 (392)
Q Consensus       190 ------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~dg~~~~~~~~~----  258 (392)
                            +.+|...|++++|+ +++.+|++++.|+.|++||+.+++....+ .+|...|.+++|++++.++..+.+.    
T Consensus       314 ~~~~~~~~gh~~~v~~l~~s-pdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~  392 (611)
T 1nr0_A          314 GSIDQVRYGHNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV  392 (611)
T ss_dssp             TEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred             CCcceEEcCCCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEE
Confidence                  35788999999999 68899999999999999999988876655 4577777777777665544332211    


Q ss_pred             -----CCCCCC------------------C----------------------------------Ccccccccc-ccccce
Q psy17243        259 -----SRPAGP------------------K----------------------------------RPLRRLLKK-EVSLDT  280 (392)
Q Consensus       259 -----~~~~~~------------------~----------------------------------~~~~~~~~~-~~~~~~  280 (392)
                           ......                  .                                  .|..+++.. ...-..
T Consensus       393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v  472 (611)
T 1nr0_A          393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  472 (611)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE
Confidence                 000000                  0                                  000000000 001112


Q ss_pred             eEEEecc---------CCcceeEEEeecccccceeEEEeeccccceecceecc---------CC-CC------CCChhhh
Q psy17243        281 YTWQRKY---------GHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDN---------VG-SQ------GLGPEQA  335 (392)
Q Consensus       281 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~---------~~-~~------~~s~dg~  335 (392)
                      ..|....         +|...+   ..+...++++++++++.|+++++|....         .+ |.      +|+|||+
T Consensus       473 ~lwd~~~~~~~~~~~~~h~~~v---~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~  549 (611)
T 1nr0_A          473 HVYKLSGASVSEVKTIVHPAEI---TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV  549 (611)
T ss_dssp             EEEEEETTEEEEEEEEECSSCE---EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred             EEEEccCCceeeeeccCCCCce---EEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC
Confidence            2333221         222222   2334566789999999999999997643         11 33      8999999


Q ss_pred             hhhcccChHHHHHHhhCCCCCCcccccccccc-ccCccccccccCccCCCCccccc
Q psy17243        336 ALAQSQHFDQLEALWNKKSPPRSRRFEHSMSK-QNSYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       336 ~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~-~~~~~~~~fspdg~~l~~~~~d~  390 (392)
                      +|| +++.|++|+|||+.++..... .....+ ...+.+++|+|||+ ||+++.|.
T Consensus       550 ~la-sgs~D~~v~lW~~~~~~~~~~-~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~  602 (611)
T 1nr0_A          550 RLA-TGSLDNSVIVWNMNKPSDHPI-IIKGAHAMSSVNSVIWLNETT-IVSAGQDS  602 (611)
T ss_dssp             EEE-EEETTSCEEEEETTCTTSCCE-EETTSSTTSCEEEEEEEETTE-EEEEETTS
T ss_pred             EEE-EEECCCcEEEEECCCcccccc-hhhccCcccCeeEEEEcCCCE-EEEecCCC
Confidence            999 999999999999987764220 111223 45677899999999 88887764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4e-48  Score=361.81  Aligned_cols=361  Identities=22%  Similarity=0.318  Sum_probs=294.0

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++
T Consensus       197 ~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~  274 (577)
T 2ymu_A          197 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDG  274 (577)
T ss_dssp             EEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTS
T ss_pred             EEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCC
Confidence            4678999999995 57888889999999999999999999999999999999995 577888999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCcee--eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQL--LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF  158 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~  158 (392)
                      +.|++++.|+.|++||......  +..+...+.+++++|+++.+++++.|+.|++||...    ........|...+.++
T Consensus       275 ~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~----~~~~~~~~~~~~v~~~  350 (577)
T 2ymu_A          275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----QHLQTLTGHSSSVWGV  350 (577)
T ss_dssp             SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEE
T ss_pred             CEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC----CeeEEEeCCCCCEEEE
Confidence            9999999999999999754322  234456789999999999999999999999999853    2334445788999999


Q ss_pred             EEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccc
Q psy17243        159 TVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG  238 (392)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (392)
                      +|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+ +++.+|++++.|+.|++||. +++.+..+.+|..
T Consensus       351 ~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~  427 (577)
T 2ymu_A          351 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS  427 (577)
T ss_dssp             EECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSEEEEECT-TCCEEEEEECCSS
T ss_pred             EECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEEC-CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCC
Confidence            99999999999999999999995 678888999999999999999 67889999999999999995 5788889999999


Q ss_pred             ceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeecccccee
Q psy17243        239 CVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISK  318 (392)
Q Consensus       239 ~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~  318 (392)
                      .|.+++|+||+++++++..++....+     ..  ...     ......+|...+..+   ...++++++++++.|+.++
T Consensus       428 ~v~~~~~s~d~~~l~~~~~d~~v~~w-----~~--~~~-----~~~~~~~~~~~v~~~---~~spd~~~las~~~d~~i~  492 (577)
T 2ymu_A          428 SVWGVAFSPDDQTIASASDDKTVKLW-----NR--NGQ-----LLQTLTGHSSSVRGV---AFSPDGQTIASASDDKTVK  492 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEE-----ET--TSC-----EEEEEECCSSCEEEE---EECTTSCEEEEEETTSEEE
T ss_pred             CeEEEEECCCCCEEEEEcCCCEEEEE-----EC--CCC-----EEEEEcCCCCCEEEE---EEcCCCCEEEEEeCCCEEE
Confidence            99999999999999998755433221     11  000     011122444433333   3356788999999999999


Q ss_pred             cceecc------CCCC------CCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCc
Q psy17243        319 IPIKDN------VGSQ------GLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSP  386 (392)
Q Consensus       319 ~~~~~~------~~~~------~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~  386 (392)
                      +|....      .++.      +|+|||++|| +++.|+.|+|||. +++...   ....+...+.+++|+|||++|+++
T Consensus       493 iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-s~~~dg~v~lwd~-~~~~~~---~~~~h~~~v~~~~fs~dg~~l~s~  567 (577)
T 2ymu_A          493 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA-SASDDKTVKLWNR-NGQLLQ---TLTGHSSSVWGVAFSPDGQTIASA  567 (577)
T ss_dssp             EEETTSCEEEEEECCSSCEEEEEECTTSSCEE-EEETTSEEEEECT-TSCEEE---EEECCSSCEEEEEECTTSSCEEEE
T ss_pred             EEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEE-EEECcCEEEEEeC-CCCEEE---EEcCCCCCEEEEEEcCCCCEEEEE
Confidence            997432      1222      8999999999 9999999999996 343322   222345668889999999999998


Q ss_pred             cccc
Q psy17243        387 VDEF  390 (392)
Q Consensus       387 ~~d~  390 (392)
                      +.|.
T Consensus       568 ~~D~  571 (577)
T 2ymu_A          568 SSDK  571 (577)
T ss_dssp             ETTS
T ss_pred             eCCC
Confidence            8774

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.2e-46  Score=332.11  Aligned_cols=238  Identities=23%  Similarity=0.347  Sum_probs=218.7

Q ss_pred             eeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcC
Q psy17243         19 QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD   98 (392)
Q Consensus        19 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   98 (392)
                      ...+.+|..+|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCc
Q psy17243         99 NAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS  175 (392)
Q Consensus        99 ~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (392)
                      +++.+..+   ...+.+++|+|++++|++++.|+.|++||++++   ........|...|.++.++|++++|++++.|+.
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence            98877654   457899999999999999999999999999854   334455688999999999999999999999999


Q ss_pred             EEEEEcCCCeEEEEEecCCCceeEEEEecCC-------------------CcEEEEecCCCeEEEEECCCCceeeeeccc
Q psy17243        176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTN-------------------KSLVVSGSKDSNLIVWDMETGGEEHFLAGH  236 (392)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  236 (392)
                      |++||++++++...+.+|...|.+++|+|..                   +.+|++|+.|+.|++||+++++++..+.+|
T Consensus       258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h  337 (410)
T 1vyh_C          258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  337 (410)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence            9999999999999999999999999999642                   668999999999999999999999999999


Q ss_pred             ccceeEEEEcCCCeEEEEcCCCC
Q psy17243        237 LGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       237 ~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      ...|.+++|+|+|++++++..++
T Consensus       338 ~~~v~~v~~~~~g~~l~s~s~D~  360 (410)
T 1vyh_C          338 DNWVRGVLFHSGGKFILSCADDK  360 (410)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTT
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCC
Confidence            99999999999999999876543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.7e-46  Score=347.23  Aligned_cols=361  Identities=23%  Similarity=0.321  Sum_probs=289.1

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ||+.|+.|+|||. ++++++.+.+|...|++++|+|++++|++++.|++|+|||. +++.+..+.+|...|.+++|+|++
T Consensus        33 s~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~  110 (577)
T 2ymu_A           33 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG  110 (577)
T ss_dssp             EEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTS
T ss_pred             EEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCC
Confidence            4788999999995 68899999999999999999999999999999999999995 678899999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeee-------------------------------------------ecccceeEEEEeC
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLY-------------------------------------------SALGPSKCLTVTH  117 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~-------------------------------------------~~~~~~~~~~~~~  117 (392)
                      ++|++++.|+.+++|+........                                           .....+.++.++|
T Consensus       111 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  190 (577)
T 2ymu_A          111 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP  190 (577)
T ss_dssp             SEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT
T ss_pred             CEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecC
Confidence            999999999999999875432110                                           1123456788999


Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCce
Q psy17243        118 NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHV  197 (392)
Q Consensus       118 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  197 (392)
                      +++++++++.|+.|++||..    .........|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|
T Consensus       191 ~~~~l~~~~~d~~v~~w~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v  265 (577)
T 2ymu_A          191 DGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  265 (577)
T ss_dssp             TSSCEEEEETTSEEEEECTT----SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCE
T ss_pred             CCCEEEEEcCCCEEEEEeCC----CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCE
Confidence            99999999999999999964    2334455678999999999999999999999999999995 567888899999999


Q ss_pred             eEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccc
Q psy17243        198 SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVS  277 (392)
Q Consensus       198 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (392)
                      ++++|+ +++.++++++.|+.|++||. +++.+..+.+|...|.+++|+|+++.++++..++....+     .....  .
T Consensus       266 ~~v~~~-~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w-----~~~~~--~  336 (577)
T 2ymu_A          266 NGVAFR-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQ--H  336 (577)
T ss_dssp             EEEEEC-TTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE-----ETTSC--E
T ss_pred             EEEEEc-CCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE-----eCCCC--e
Confidence            999999 67889999999999999996 467788899999999999999999999988755433221     11100  0


Q ss_pred             cceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceecc------CCCC------CCChhhhhhhcccChHH
Q psy17243        278 LDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDN------VGSQ------GLGPEQAALAQSQHFDQ  345 (392)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~------~~~~------~~s~dg~~la~s~~~d~  345 (392)
                           .....+|...+..+   ...+++.++++++.|+.+++|....      .++.      +|+|||++|+ +++.|+
T Consensus       337 -----~~~~~~~~~~v~~~---~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-~~~~d~  407 (577)
T 2ymu_A          337 -----LQTLTGHSSSVWGV---AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA-SASDDK  407 (577)
T ss_dssp             -----EEEECCCSSCEEEE---EECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEE-EEETTS
T ss_pred             -----eEEEeCCCCCEEEE---EECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEE-EEeCCC
Confidence                 01122333333332   3345678999999999999996421      1111      8999999998 999999


Q ss_pred             HHHHhhCCCCCCccccccccccccCccccccccCccCCCCccccc
Q psy17243        346 LEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       346 ~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d~  390 (392)
                      .|++||.. ++...   ....+...+..++|+||+++||+++.|.
T Consensus       408 ~v~~~~~~-~~~~~---~~~~~~~~v~~~~~s~d~~~l~~~~~d~  448 (577)
T 2ymu_A          408 TVKLWNRN-GQLLQ---TLTGHSSSVWGVAFSPDDQTIASASDDK  448 (577)
T ss_dssp             EEEEECTT-CCEEE---EEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEeCC-CCEEE---EecCCCCCeEEEEECCCCCEEEEEcCCC
Confidence            99999963 33211   2223445577799999999999887763

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.8e-45  Score=325.31  Aligned_cols=251  Identities=20%  Similarity=0.403  Sum_probs=232.1

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++
T Consensus       125 s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~  204 (410)
T 1vyh_C          125 SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG  204 (410)
T ss_dssp             EEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS
T ss_pred             EEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      ++|++++.|+.|++||+.+++.+..+   ...+.++.+++++.++++++.|+.|++||+.+.   ........|...|.+
T Consensus       205 ~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~---~~~~~~~~h~~~v~~  281 (410)
T 1vyh_C          205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK---ECKAELREHRHVVEC  281 (410)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeEecCCCceEEE
Confidence            99999999999999999999876654   446889999999999999999999999999744   333344578899999


Q ss_pred             EEEEcC--------------------CCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC
Q psy17243        158 FTVTWD--------------------SQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       158 ~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                      ++|+|+                    +.+|++|+.|+.|++||+++++++..+.+|...|++++|+ +++.+|++++.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~D~  360 (410)
T 1vyh_C          282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH-SGGKFILSCADDK  360 (410)
T ss_dssp             EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-SSSSCEEEEETTT
T ss_pred             EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc-CCCCEEEEEeCCC
Confidence            999996                    6789999999999999999999999999999999999999 6788999999999


Q ss_pred             eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        218 NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      .|++||+.+++++..+.+|...|++++|+|++.+++++
T Consensus       361 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg  398 (410)
T 1vyh_C          361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG  398 (410)
T ss_dssp             EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred             eEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEE
Confidence            99999999999999999999999999999998776664

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.2e-45  Score=317.07  Aligned_cols=240  Identities=21%  Similarity=0.298  Sum_probs=212.8

Q ss_pred             ccceeeeccCCcCeeEEEecCC----CCeEEEEeCCCeEEEEeCCCCce--eEEecccccceEEEEEecCCCEEEEEeCC
Q psy17243         16 HELQSTMEGHLNTVSCVAISPN----SIFAVSGSEDNTAKVWGLTLGSV--VSTFKSHQSTILAVAVLSDSRRVVTSDKA   89 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~----~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   89 (392)
                      +.+.+.+++|.+.|++++|+|+    +.+|++|+.|++|+||++.+++.  ...+.+|...|.+++|++++..+++++.|
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            4455667899999999999985    56899999999999999987754  45688999999999999999999999999


Q ss_pred             CeEEEEEcCCceeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCE
Q psy17243         90 GVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY  166 (392)
Q Consensus        90 ~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (392)
                      +.|++||+.+++.+..+.   ..+.+++|+|++++|++++.++.|++|+++...   .......+...+.+++|+|++++
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~---~~~~~~~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK---KEYSLDTRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS---EEEEEECSSSCEEEEEECTTSSE
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc---eeEEecCCCceEEEEEECCCCCE
Confidence            999999999998876543   467789999999999999999999999997543   33344467788999999999999


Q ss_pred             EEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEc
Q psy17243        167 LITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLA  246 (392)
Q Consensus       167 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  246 (392)
                      |++++.|+.|++||+++++.+..+.+|..+|.+++|+ +++.+|++++.|+.|++||+++++.+..+.+|...|.+++|+
T Consensus       179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s  257 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC  257 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEEC-TTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEc-CCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEEC
Confidence            9999999999999999999999999999999999999 678899999999999999999999999999999999999999


Q ss_pred             CCCeEEEEcCCCC
Q psy17243        247 GDGTVAMSDLPPS  259 (392)
Q Consensus       247 ~dg~~~~~~~~~~  259 (392)
                      |++++++++..++
T Consensus       258 p~~~~l~s~s~D~  270 (321)
T 3ow8_A          258 PDDTHFVSSSSDK  270 (321)
T ss_dssp             TTSSEEEEEETTS
T ss_pred             CCCCEEEEEeCCC
Confidence            9999999876443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-44  Score=311.18  Aligned_cols=256  Identities=28%  Similarity=0.357  Sum_probs=233.8

Q ss_pred             CCccCCeEEEEECCCcc--ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEec
Q psy17243          1 MGGMDCLVNVWQMNSHE--LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~   78 (392)
                      ||+.|++|+||++.+.+  ....+.+|...|.+++|++++.++++++.|++|++||+++++.+..+..|...+.+++|+|
T Consensus        53 tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp  132 (321)
T 3ow8_A           53 TGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP  132 (321)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT
T ss_pred             EEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC
Confidence            57899999999997664  3456889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         79 DSRRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        79 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      ++++|++++.++.|++||+++++....+   ...+.+++|+|++++|++++.|+.|++||+++.   ........|..+|
T Consensus       133 dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~---~~~~~~~~h~~~v  209 (321)
T 3ow8_A          133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG---KLLHTLEGHAMPI  209 (321)
T ss_dssp             TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCC
T ss_pred             CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEcccCCce
Confidence            9999999999999999999998776544   346889999999999999999999999999743   3344455788999


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      .+++|+|++++|++++.|+.|++||+++++....+.+|...|.+++|+ +++.+|++++.|+.|++||+.+++++..+.+
T Consensus       210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  288 (321)
T 3ow8_A          210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC-PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD  288 (321)
T ss_dssp             CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC
Confidence            999999999999999999999999999999999999999999999999 6788999999999999999999999999999


Q ss_pred             cccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        236 HLGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       236 ~~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      |...|.+++|+|+|+.++++..++.
T Consensus       289 h~~~v~~v~~s~~g~~l~s~~~d~~  313 (321)
T 3ow8_A          289 HQDQVWGVKYNGNGSKIVSVGDDQE  313 (321)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTCC
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCe
Confidence            9999999999999999999875543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.5e-45  Score=371.32  Aligned_cols=385  Identities=16%  Similarity=0.227  Sum_probs=294.8

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEec--
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS--   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--   78 (392)
                      +|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|  
T Consensus       632 s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  711 (1249)
T 3sfz_A          632 SCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKS  711 (1249)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred             EEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc-----------
Q psy17243         79 DSRRVVTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD-----------  144 (392)
Q Consensus        79 ~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-----------  144 (392)
                      ++..+++++.|+.|++||+.+++.+..   +...+.+++|+|+++++++++.||.|++||+........           
T Consensus       712 ~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  791 (1249)
T 3sfz_A          712 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE  791 (1249)
T ss_dssp             SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC----
T ss_pred             CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccC
Confidence            556899999999999999999987654   455789999999999999999999999999864321100           


Q ss_pred             -----------------------------------------ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC
Q psy17243        145 -----------------------------------------ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       145 -----------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                                                               ......|...+.+++|+|+++++++++.++.|++||+.+
T Consensus       792 ~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~  871 (1249)
T 3sfz_A          792 DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS  871 (1249)
T ss_dssp             ----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT
T ss_pred             CccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Confidence                                                     011125778899999999999999999999999999999


Q ss_pred             CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECC--------------------------------------
Q psy17243        184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME--------------------------------------  225 (392)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--------------------------------------  225 (392)
                      ++.+..+.+|...|++++|+ +++.+|++++.||.|++||+.                                      
T Consensus       872 ~~~~~~~~~h~~~v~~v~~s-pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  950 (1249)
T 3sfz_A          872 RLKVADCRGHLSWVHGVMFS-PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA  950 (1249)
T ss_dssp             TEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred             CceeeecCCCccceEEEEEC-CCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence            99999999999999999999 577788888888888888743                                      


Q ss_pred             -----------------------------------------CCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCC
Q psy17243        226 -----------------------------------------TGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGP  264 (392)
Q Consensus       226 -----------------------------------------~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~  264 (392)
                                                               +++....+.+|...|.+++|+|+|++++++..++....+
T Consensus       951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A          951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030 (1249)
T ss_dssp             ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEE
T ss_pred             cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence                                                     233344555677788888888888887777655432211


Q ss_pred             CCcc---------------------ccccccccccceeEEEeccCCcceeEE-----EeecccccceeEEEeecccccee
Q psy17243        265 KRPL---------------------RRLLKKEVSLDTYTWQRKYGHLTSSIM-----MAAVDERLKRRFSVSASMEEISK  318 (392)
Q Consensus       265 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~s~d~~~~  318 (392)
                      ....                     ..++.....-....|....+.....+.     +......+++.++++++.|++++
T Consensus      1031 d~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~ 1110 (1249)
T 3sfz_A         1031 NWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAK 1110 (1249)
T ss_dssp             ETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCC
T ss_pred             ECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence            1000                     000111111122334333332222111     11223345788899999999999


Q ss_pred             cceeccC-------CCC------CCChhhhhhhcccChHHHHHHhhCCCCCCccccc------cccccccCccccccccC
Q psy17243        319 IPIKDNV-------GSQ------GLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFE------HSMSKQNSYSSRQHSVD  379 (392)
Q Consensus       319 ~~~~~~~-------~~~------~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~------~~~~~~~~~~~~~fspd  379 (392)
                      +|.....       ++.      +|+|||++|| +++.||.|++||+.++.....+.      ....+...+..++||||
T Consensus      1111 iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~la-t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 1189 (1249)
T 3sfz_A         1111 IWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA-TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD 1189 (1249)
T ss_dssp             EECSSSSSCSBCCCCCSSCEEEEEECSSSSEEE-EEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTT
T ss_pred             EEECCCcceeeeeccCCCcEEEEEECCCCCEEE-EEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCC
Confidence            9975421       222      8999999999 99999999999999877633210      11234455777999999


Q ss_pred             ccCCCCcc
Q psy17243        380 TDELSSPV  387 (392)
Q Consensus       380 g~~l~~~~  387 (392)
                      |++|++++
T Consensus      1190 g~~l~s~~ 1197 (1249)
T 3sfz_A         1190 SKTLVSAG 1197 (1249)
T ss_dssp             SSCEEEES
T ss_pred             CCEEEECC
Confidence            99999765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.7e-43  Score=301.98  Aligned_cols=253  Identities=20%  Similarity=0.318  Sum_probs=228.3

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|++||+++++.+..+..|..+|.+++|+|++++|++|+.|++|++||+++++.+..+.+|...|.+++|+|++
T Consensus        30 s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  109 (304)
T 2ynn_A           30 TTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK  109 (304)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred             EEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceee----eecccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLL----YSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      ++|++++.|+.|++||++++..+    ..+...+.+++|+| ++..|++++.|+.|++||++....  .......+...+
T Consensus       110 ~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~~~~~~~~~~~v  187 (304)
T 2ynn_A          110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGV  187 (304)
T ss_dssp             SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--SEEEECCCTTCE
T ss_pred             CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--cceeccCCcCcE
Confidence            99999999999999999877332    33556789999999 678999999999999999974332  233344566889


Q ss_pred             EEEEEEc--CCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee
Q psy17243        156 TCFTVTW--DSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       156 ~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                      ..+.|+|  ++.+|++++.|+.|++||+++++++..+.+|...|.+++|+ +++.+|++|+.||.|++||+.+++.+..+
T Consensus       188 ~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH-PTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (304)
T ss_dssp             EEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence            9999987  67899999999999999999999999999999999999999 67889999999999999999999999999


Q ss_pred             cccccceeEEEEcCCCe--EEEEcC
Q psy17243        234 AGHLGCVTCVKLAGDGT--VAMSDL  256 (392)
Q Consensus       234 ~~~~~~v~~~~~~~dg~--~~~~~~  256 (392)
                      ..|...+.+++|+|++.  +++++.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~asg~  291 (304)
T 2ynn_A          267 NVGLERSWCIATHPTGRKNYIASGF  291 (304)
T ss_dssp             CCSSSSEEEEEECTTCGGGCEEEEE
T ss_pred             cCCCccEEEEEECCCCCceEEEEec
Confidence            99999999999999875  577764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.2e-44  Score=312.00  Aligned_cols=238  Identities=18%  Similarity=0.339  Sum_probs=210.9

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      .+....+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.+++|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCce----e---eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEE
Q psy17243         96 VADNAQ----L---LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI  168 (392)
Q Consensus        96 d~~~~~----~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (392)
                      ++.+.+    .   +..+...+.++.|++++. +++++.|+.|++||+.+.   .......+|...|.+++|+|++++|+
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG---QQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC---cEEEEEcCCCCceEEEEECCCCCEEE
Confidence            998753    2   234556788999988775 889999999999999743   33444557899999999999999999


Q ss_pred             EeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc--cccceeEEEEc
Q psy17243        169 TGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG--HLGCVTCVKLA  246 (392)
Q Consensus       169 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~  246 (392)
                      +|+.|+.|++||+++++++..+.+|...|++++|+ +++.+|++++.||.|++||+++++.+..+..  +...|.+++|+
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  279 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence            99999999999999999999999999999999999 6788999999999999999999888776653  33479999999


Q ss_pred             CCCeEEEEcCCC
Q psy17243        247 GDGTVAMSDLPP  258 (392)
Q Consensus       247 ~dg~~~~~~~~~  258 (392)
                      |+|++++++..+
T Consensus       280 ~~g~~l~~g~~d  291 (340)
T 1got_B          280 KSGRLLLAGYDD  291 (340)
T ss_dssp             TTSSEEEEEETT
T ss_pred             CCCCEEEEECCC
Confidence            999999997644

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.3e-44  Score=347.66  Aligned_cols=376  Identities=16%  Similarity=0.186  Sum_probs=291.6

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|+|||+.+++.+..+.+|..+|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++
T Consensus        30 ~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~  109 (814)
T 3mkq_A           30 TTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK  109 (814)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred             EEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCc-eee---eecccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         81 RRVVTSDKAGVIAVWVADNA-QLL---YSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~-~~~---~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      ++|++++.||.|++||+.++ ...   ..+..++.+++|+| +++.+++++.||.|++||+.....  .......+...+
T Consensus       110 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~~v  187 (814)
T 3mkq_A          110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGV  187 (814)
T ss_dssp             SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC--SEEEECCCTTCC
T ss_pred             CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--eeEEecCCCCCE
Confidence            99999999999999999887 333   33456889999999 889999999999999999975432  223333455889


Q ss_pred             EEEEEEc--CCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee
Q psy17243        156 TCFTVTW--DSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       156 ~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                      .+++|+|  ++.+|++++.||.|++||+++++.+..+.+|...|.+++|+ +++.++++++.||.|++||+.+++.+..+
T Consensus       188 ~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  266 (814)
T 3mkq_A          188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH-PTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (814)
T ss_dssp             CEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             EEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            9999999  89999999999999999999999999999999999999999 67889999999999999999999999999


Q ss_pred             cccccceeEEEEcCCCe--EEEEcCCCCC---------CCCCCCcccccc------------------------------
Q psy17243        234 AGHLGCVTCVKLAGDGT--VAMSDLPPSR---------PAGPKRPLRRLL------------------------------  272 (392)
Q Consensus       234 ~~~~~~v~~~~~~~dg~--~~~~~~~~~~---------~~~~~~~~~~~~------------------------------  272 (392)
                      ..|...+.+++|+|+|.  +++.+.....         ......+....+                              
T Consensus       267 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (814)
T 3mkq_A          267 NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLS  346 (814)
T ss_dssp             CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBC
T ss_pred             ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccce
Confidence            99999999999999987  4555432210         000000000000                              


Q ss_pred             -------ccccccceeEEEe------------------ccCCcceeEEEeecccccceeEEEeeccccceecceec----
Q psy17243        273 -------KKEVSLDTYTWQR------------------KYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKD----  323 (392)
Q Consensus       273 -------~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~----  323 (392)
                             ..........|..                  ........-.+......+++.++++++.++.+++|..-    
T Consensus       347 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~  426 (814)
T 3mkq_A          347 LQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVT  426 (814)
T ss_dssp             CCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECT
T ss_pred             eeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCcc
Confidence                   0000011111111                  00000000111123334578889999999999998532    


Q ss_pred             -cCCCCCCChhh---hhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCc
Q psy17243        324 -NVGSQGLGPEQ---AALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSP  386 (392)
Q Consensus       324 -~~~~~~~s~dg---~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~  386 (392)
                       .....+|+|||   ++|+ +++.|+.|++||+.++.....    +.....  .++|||||++||++
T Consensus       427 ~~v~~~~~s~dg~~~~~l~-~~~~d~~v~~~d~~~~~~~~~----~~~~~~--~v~~s~dg~~la~~  486 (814)
T 3mkq_A          427 SWSVPMHSAIDRLFSGALL-GVKSDGFVYFFDWDNGTLVRR----IDVNAK--DVIWSDNGELVMIV  486 (814)
T ss_dssp             TCCCCCSSCCCEEECSSSE-EEEETTEEEEECTTTCCEEEE----ESSCEE--EEEECTTSSEEEEE
T ss_pred             ceEEcCCcCccceecceEE-EEecCCEEEEEECCcCcEEEE----EecCCC--EEEEcCCCCEEEEE
Confidence             12233899999   5777 788999999999988766332    222222  68999999999977

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.9e-44  Score=312.73  Aligned_cols=243  Identities=16%  Similarity=0.195  Sum_probs=206.0

Q ss_pred             CccceeeeccCCc-CeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeE---EecccccceEEEEEecCCCEEEEEeCCC
Q psy17243         15 SHELQSTMEGHLN-TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS---TFKSHQSTILAVAVLSDSRRVVTSDKAG   90 (392)
Q Consensus        15 ~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~   90 (392)
                      ..+++..+.+|.. .|.+++|+|++++|++|+.|++|+|||++++....   ...+|...|.+++|+|++++|++++.|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            3456778889988 99999999999999999999999999998876432   2367999999999999999999999999


Q ss_pred             eEEEEEcCCce--eee---ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCC
Q psy17243         91 VIAVWVADNAQ--LLY---SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQ  165 (392)
Q Consensus        91 ~i~iwd~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (392)
                      .+++||+..+.  .+.   .+...+.+++|+|++++|++++.|+.|++||+..............|...|.+++|+|+++
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            99999998763  333   3456889999999999999999999999999986544444455567899999999999999


Q ss_pred             EEEEeeCCCcEEEEEcCCCe--EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC---------------c
Q psy17243        166 YLITGSRDMSLKVWQVVGGK--LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG---------------G  228 (392)
Q Consensus       166 ~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------------~  228 (392)
                      +|++++.|+.|++||.++++  +...+.+|...|++++|+ +++.+|++++.|++|++||...+               +
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s-p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~  242 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK  242 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEEC-CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence            99999999999999998875  456788999999999999 67889999999999999996432               2


Q ss_pred             eeeeecc-cccceeEEEEcCCCeEEEEcCCC
Q psy17243        229 EEHFLAG-HLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       229 ~~~~~~~-~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      ++..+.+ |...|.+++|+|++..++++..+
T Consensus       243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d  273 (345)
T 3fm0_A          243 CICTLSGFHSRTIYDIAWCQLTGALATACGD  273 (345)
T ss_dssp             EEEEECSSCSSCEEEEEECTTTCCEEEEETT
T ss_pred             eeEEecCCCCCcEEEEEEecCCCEEEEEeCC
Confidence            2334444 78899999999999988887544

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.4e-43  Score=305.79  Aligned_cols=235  Identities=18%  Similarity=0.334  Sum_probs=209.4

Q ss_pred             ccceeeeccCCcCeeEEEecCCC-CeEEEEeCCCeEEEEeCCC-----CceeEEecccccceEEEEEecCCCEEEEEeCC
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNS-IFAVSGSEDNTAKVWGLTL-----GSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA   89 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   89 (392)
                      ..+..++.+|.+.|++++|+|++ ++|++|+.|++|++|++..     +.++..+.+|...|.+++|+|++++|++++.|
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            44567789999999999999965 7999999999999999864     34567889999999999999999999999999


Q ss_pred             CeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC---
Q psy17243         90 GVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD---  163 (392)
Q Consensus        90 ~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---  163 (392)
                      +.|++||+.+++.+..   +...+.+++++|++.+|++++.|+.|++||++.    .......+|...|.++++.|.   
T Consensus        87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~----~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEEECCC---
T ss_pred             CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeEEEEeccCCcEEEEEEccCCCC
Confidence            9999999999987655   455789999999999999999999999999962    234445578999999999985   


Q ss_pred             ---CCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccce
Q psy17243        164 ---SQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCV  240 (392)
Q Consensus       164 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  240 (392)
                         +.+|++++.|+.|++||+++.+....+.+|...|.+++|+ +++.+|++++.||.|++||+.+++.+..+.. ...|
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v  240 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEV  240 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCE
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcE
Confidence               4489999999999999999999999999999999999999 6889999999999999999999999888875 4689


Q ss_pred             eEEEEcCCCeEEEEcC
Q psy17243        241 TCVKLAGDGTVAMSDL  256 (392)
Q Consensus       241 ~~~~~~~dg~~~~~~~  256 (392)
                      .+++|+|++.+++.+.
T Consensus       241 ~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          241 FSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             EEEEECSSSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEEc
Confidence            9999999999998864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.7e-43  Score=303.34  Aligned_cols=243  Identities=16%  Similarity=0.276  Sum_probs=216.2

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      .+..+++.+|.+.|.+++|+|++++|++++.||+|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            35567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc-CCCEEEEee
Q psy17243         96 VADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW-DSQYLITGS  171 (392)
Q Consensus        96 d~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  171 (392)
                      |+.+++.+..+   ...+.+++|+|++++|++++.|+.|++||++...  .......+|...|.+++|+| ++.+|++|+
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT--EEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc--chhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence            99999876554   4578999999999999999999999999997431  22334557899999999999 578999999


Q ss_pred             CCCcEEEEEcCCCeEEEEEe-cCCCceeEEEEec-CCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCC
Q psy17243        172 RDMSLKVWQVVGGKLAQVLV-GHTDHVSCVAVAV-TNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDG  249 (392)
Q Consensus       172 ~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg  249 (392)
                      .|+.|++||+++.++...+. +|...+..+.|+| +++.+|++++.|+.|++||+++++++..+.+|...|.+++|+|++
T Consensus       161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~  240 (304)
T 2ynn_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL  240 (304)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred             CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC
Confidence            99999999998887666554 5667899999986 367899999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCC
Q psy17243        250 TVAMSDLPPSR  260 (392)
Q Consensus       250 ~~~~~~~~~~~  260 (392)
                      .+++++..++.
T Consensus       241 ~~l~s~s~Dg~  251 (304)
T 2ynn_A          241 PIIISGSEDGT  251 (304)
T ss_dssp             SEEEEEETTSC
T ss_pred             CEEEEEcCCCe
Confidence            99988765433

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-44  Score=319.94  Aligned_cols=309  Identities=16%  Similarity=0.308  Sum_probs=244.4

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEE
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTS   86 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   86 (392)
                      .+..|+..+....+.+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|+++
T Consensus        47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~  126 (380)
T 3iz6_a           47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG  126 (380)
T ss_dssp             GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred             cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe
Confidence            34567777778888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEEcCCce----------eeeecccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCCCcc--eeeecccc
Q psy17243         87 DKAGVIAVWVADNAQ----------LLYSALGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHKDDE--RFTVSHSE  153 (392)
Q Consensus        87 ~~d~~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~  153 (392)
                      +.|+.+++||+.+..          .+..+...+.++.|.|+ +..|++++.|+.|++||+.++......  ....+|..
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~  206 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA  206 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred             eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence            999999999987532          23345556788888886 457999999999999999865432211  11246888


Q ss_pred             ceEEEEEEc-CCCEEEEeeCCCcEEEEEcC-CCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee
Q psy17243        154 EITCFTVTW-DSQYLITGSRDMSLKVWQVV-GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       154 ~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      .|.+++|++ ++++|++|+.|+.|++||++ ..+.+..+.+|...|++++|+ +++.+|++++.||+|++||+++++.+.
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~i~lwd~~~~~~~~  285 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF-PDGQRFGTGSDDGTCRLFDMRTGHQLQ  285 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEEC-TTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred             CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEe-cCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence            999999987 78999999999999999998 457788899999999999999 678899999999999999999999887


Q ss_pred             eecccc-------cceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccc
Q psy17243        232 FLAGHL-------GCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLK  304 (392)
Q Consensus       232 ~~~~~~-------~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (392)
                      .+..+.       ..|.+++|+|+|++++++..++..                   +.|....+.....           
T Consensus       286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i-------------------~vwd~~~~~~~~~-----------  335 (380)
T 3iz6_a          286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC-------------------YVWDTLLAEMVLN-----------  335 (380)
T ss_dssp             EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCE-------------------EEEETTTCCEEEE-----------
T ss_pred             EecccccccccccCceEEEEECCCCCEEEEEECCCCE-------------------EEEECCCCceEEE-----------
Confidence            775543       248999999999999998644322                   2232211110000           


Q ss_pred             eeEEEeeccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCC
Q psy17243        305 RRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPP  356 (392)
Q Consensus       305 ~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~  356 (392)
                          + .    .....+...+...+|+|||++|+ +++.|+.|+||++....
T Consensus       336 ----~-~----~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          336 ----L-G----TLQNSHEGRISCLGLSSDGSALC-TGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             ----E-C----CSCSSCCCCCCEEEECSSSSEEE-EECTTSCEEEEECCSSS
T ss_pred             ----E-e----cccCCCCCceEEEEECCCCCEEE-EeeCCCCEEEEecCCCc
Confidence                0 0    00000111122237899999998 99999999999987543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.9e-43  Score=306.69  Aligned_cols=238  Identities=16%  Similarity=0.244  Sum_probs=211.2

Q ss_pred             cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        17 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      +....+++|...|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++..+++++.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCc---------eeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc--CCC
Q psy17243         97 ADNA---------QLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW--DSQ  165 (392)
Q Consensus        97 ~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~  165 (392)
                      +...         ..+..+...+.++.|+|++..|++++.|+.|++||+++.   .......+|...|.+++|+|  +++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECCCSSCC
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEEeCCCCC
Confidence            8643         223456678899999999999999999999999999744   33445567899999999987  468


Q ss_pred             EEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccc--ccceeEE
Q psy17243        166 YLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH--LGCVTCV  243 (392)
Q Consensus       166 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~  243 (392)
                      +|++|+.||.|++||+++++++..+.+|...|++++|+ +++.+|++++.|++|++||+++++.+..+..+  ...+.++
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~  290 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY-PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV  290 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEE
Confidence            99999999999999999999999999999999999999 67889999999999999999998877666543  3478999


Q ss_pred             EEcCCCeEEEEcCCC
Q psy17243        244 KLAGDGTVAMSDLPP  258 (392)
Q Consensus       244 ~~~~dg~~~~~~~~~  258 (392)
                      +|+|+|++++++..+
T Consensus       291 ~~s~~g~~l~~g~~d  305 (354)
T 2pbi_B          291 DFSLSGRLLFAGYND  305 (354)
T ss_dssp             EECTTSSEEEEEETT
T ss_pred             EEeCCCCEEEEEECC
Confidence            999999999987644

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.2e-42  Score=297.90  Aligned_cols=251  Identities=20%  Similarity=0.313  Sum_probs=225.4

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC----ceeEEecccccceEEEEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG----SVVSTFKSHQSTILAVAV   76 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~   76 (392)
                      +|+.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++|++.+.    +....+.+|...|.++.|
T Consensus        72 s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~  151 (340)
T 1got_B           72 SASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF  151 (340)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEE
T ss_pred             EEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEE
Confidence            5789999999999999999999999999999999999999999999999999999875    356678889999999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecccc
Q psy17243         77 LSDSRRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        77 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      ++++ .+++++.|+.|++||+++++.+..+   ...+.+++++|+++++++++.|+.|++||+++.   ........|..
T Consensus       152 ~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~---~~~~~~~~h~~  227 (340)
T 1got_B          152 LDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHES  227 (340)
T ss_dssp             EETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCCSS
T ss_pred             CCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---eeEEEEcCCcC
Confidence            9876 5899999999999999999877654   457899999999999999999999999999743   33444557899


Q ss_pred             ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec--CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee
Q psy17243        154 EITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG--HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      .|.+++|+|++++|++++.|+.|++||+++++.+..+..  +...|++++|+ +++.+|++|+.|+.|++||+.+++.+.
T Consensus       228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~d~~i~vwd~~~~~~~~  306 (340)
T 1got_B          228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDALKADRAG  306 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC-CCCCEEEEECCCCeEEEEEcccCcEee
Confidence            999999999999999999999999999999988877653  23479999999 788999999999999999999999999


Q ss_pred             eecccccceeEEEEcCCCeEEEEcC
Q psy17243        232 FLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .+.+|...|.+++|+|||.+++++.
T Consensus       307 ~~~~h~~~v~~~~~s~dg~~l~s~s  331 (340)
T 1got_B          307 VLAGHDNRVSCLGVTDDGMAVATGS  331 (340)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             EeecCCCcEEEEEEcCCCCEEEEEc
Confidence            9999999999999999998887764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.4e-41  Score=291.28  Aligned_cols=253  Identities=23%  Similarity=0.415  Sum_probs=228.3

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++
T Consensus        40 s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  119 (312)
T 4ery_A           40 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS  119 (312)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred             EeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      ++|++++.|+.|++||+++++.+..+   ..++.++.|+|++++|++++.|+.|++||+++....  ......+...+..
T Consensus       120 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~  197 (312)
T 4ery_A          120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL--KTLIDDDNPPVSF  197 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEECCSSCCCEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--eEEeccCCCceEE
Confidence            99999999999999999998876554   457899999999999999999999999999754321  2223356678999


Q ss_pred             EEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeE--EEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSC--VAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      ++|+|++++|++++.|+.|++||+++++.+..+.+|.....+  ..++++++.+|++|+.||.|++||+.+++.+..+.+
T Consensus       198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  277 (312)
T 4ery_A          198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG  277 (312)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc
Confidence            999999999999999999999999999999999888765433  356667889999999999999999999999999999


Q ss_pred             cccceeEEEEcCCCeEEEEc
Q psy17243        236 HLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       236 ~~~~v~~~~~~~dg~~~~~~  255 (392)
                      |...|.+++|+|++.+++++
T Consensus       278 h~~~v~~~~~~p~~~~l~s~  297 (312)
T 4ery_A          278 HTDVVISTACHPTENIIASA  297 (312)
T ss_dssp             CSSCEEEEEECSSSSEEEEE
T ss_pred             cCCcEEEEeecCcCCceEEE
Confidence            99999999999999998875

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.9e-43  Score=305.17  Aligned_cols=225  Identities=16%  Similarity=0.151  Sum_probs=190.9

Q ss_pred             cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEE----ecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q psy17243         24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST----FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADN   99 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   99 (392)
                      .|...|.+++|+|++ .|++|+.||+|+|||+++++.+..    +.+|...|++++|+|++++|++++.|+.|++||+++
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            367889999999986 688999999999999999876544    347999999999999999999999999999999999


Q ss_pred             ceeeeec---ccceeEEEEeCCCC-EEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC-CCEEEEeeCCC
Q psy17243        100 AQLLYSA---LGPSKCLTVTHNMK-YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD-SQYLITGSRDM  174 (392)
Q Consensus       100 ~~~~~~~---~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg  174 (392)
                      ++.+..+   ...+.+++|++++. +|++++.|+.|++||+++.+...... ...+...+.+++|+|+ +++|++|+.||
T Consensus       159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~l~sg~~dg  237 (344)
T 4gqb_B          159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG-CSAPGYLPTSLAWHPQQSEVFVFGDENG  237 (344)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred             CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee-cceeeccceeeeecCCCCcceEEeccCC
Confidence            9887765   45789999999874 78999999999999998654332221 1245667899999985 57889999999


Q ss_pred             cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeE
Q psy17243        175 SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTV  251 (392)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~  251 (392)
                      .|++||+++++++..+.+|...|++++|+|.+..+|++|+.|++|+|||+.+++.+ .+.+|.+.|++++|+|++..
T Consensus       238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~  313 (344)
T 4gqb_B          238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHS  313 (344)
T ss_dssp             EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTT
T ss_pred             cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCe
Confidence            99999999999999999999999999999666678999999999999999988754 57889999999999998753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-43  Score=316.42  Aligned_cols=336  Identities=11%  Similarity=0.122  Sum_probs=252.1

Q ss_pred             ccCCeEEEEECCCcc---ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC----CceeEEecccccceEEEE
Q psy17243          3 GMDCLVNVWQMNSHE---LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL----GSVVSTFKSHQSTILAVA   75 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~   75 (392)
                      +.|+.|++||+.+++   .+..+ .|...|.+++|+|++++|++++.||.|++||+.+    .+.+..+..|...|.+++
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~  120 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK  120 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence            789999999999876   33344 4899999999999999999999999999999987    458888999999999999


Q ss_pred             EecC-CCEEEEEeCCCeEEEEEcCCce------eee------ecccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCCC
Q psy17243         76 VLSD-SRRVVTSDKAGVIAVWVADNAQ------LLY------SALGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTH  141 (392)
Q Consensus        76 ~~~~-~~~l~~~~~d~~i~iwd~~~~~------~~~------~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~  141 (392)
                      |+|+ +++|++++.|+.|++||+.+++      ...      .+...+.+++|+|+ +.++++++.|+.|++||++....
T Consensus       121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  200 (416)
T 2pm9_A          121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE  200 (416)
T ss_dssp             ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred             EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence            9998 8999999999999999999876      222      34557889999999 78999999999999999975432


Q ss_pred             CCcceeeecc------ccceEEEEEEcCC-CEEEEeeCCC---cEEEEEcCCC-eEEEEEe-cCCCceeEEEEecCCCcE
Q psy17243        142 KDDERFTVSH------SEEITCFTVTWDS-QYLITGSRDM---SLKVWQVVGG-KLAQVLV-GHTDHVSCVAVAVTNKSL  209 (392)
Q Consensus       142 ~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~  209 (392)
                         ......+      ...+.+++|+|++ .+|++++.|+   .|++||++++ +++..+. +|...|.+++|+|.++.+
T Consensus       201 ---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  277 (416)
T 2pm9_A          201 ---VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL  277 (416)
T ss_dssp             ---EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred             ---ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe
Confidence               2222222      7889999999997 6899999998   9999999986 6677777 899999999999658999


Q ss_pred             EEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCC-eEEEEcCCCCCCCCCCCccccccccccccceeEEEeccC
Q psy17243        210 VVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDG-TVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYG  288 (392)
Q Consensus       210 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (392)
                      |++++.|+.|++||+++++++..+..|...|.+++|+|++ .+++++..++....+...............      ...
T Consensus       278 l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~------~~~  351 (416)
T 2pm9_A          278 LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETE------TKQ  351 (416)
T ss_dssp             EEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred             EEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccc------ccc
Confidence            9999999999999999999999999999999999999999 788888755432211110000000000000      000


Q ss_pred             CcceeEEEeecccccceeEEEeeccccc----eecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCC
Q psy17243        289 HLTSSIMMAAVDERLKRRFSVSASMEEI----SKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSP  355 (392)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~s~s~d~~----~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~  355 (392)
                      ...      .......+..++..+....    ...|..+.....+|+|||++|| +++.|+.|+||++.++
T Consensus       352 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la-~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          352 QES------ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQ-ITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ---------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEEC-BCTTSSCBCCBCCCCC
T ss_pred             cCC------cccccccccccccccccccccccCCccccCCccceEEeeCCeEEE-EeCCCCeEEEEEeccC
Confidence            000      0000000001111111111    1123333334558999999999 9999999999999764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-42  Score=299.61  Aligned_cols=240  Identities=20%  Similarity=0.265  Sum_probs=196.5

Q ss_pred             CCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC--ceeEEe-cc-cccceEEEEEecCCCEEEEEeCC
Q psy17243         14 NSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--SVVSTF-KS-HQSTILAVAVLSDSRRVVTSDKA   89 (392)
Q Consensus        14 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d   89 (392)
                      .+.+++..+++|..+|.+++|+|+  +|++|+.|++|++||+..+  +.+..+ .. |...|.+++|+|++++|++++.|
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D   79 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD   79 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence            345678889999999999999998  8999999999999999875  445555 44 99999999999999999999999


Q ss_pred             CeEEEEEcCCc-------eee---eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCC-CCCCcceeeeccccceEEE
Q psy17243         90 GVIAVWVADNA-------QLL---YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ-THKDDERFTVSHSEEITCF  158 (392)
Q Consensus        90 ~~i~iwd~~~~-------~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~v~~~  158 (392)
                      +.|++||+...       +.+   ..+...+.+++|+|++++|++++.|+.|++||++.. ...........|...|.++
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v  159 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV  159 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence            99999998532       222   335567899999999999999999999999999533 2223344456789999999


Q ss_pred             EEEcCCCEEEEeeCCCcEEEEEcCCC--eEEEEEecCCCceeEEEEecCC-CcEEEEecCCCeEEEEECCCC--------
Q psy17243        159 TVTWDSQYLITGSRDMSLKVWQVVGG--KLAQVLVGHTDHVSCVAVAVTN-KSLVVSGSKDSNLIVWDMETG--------  227 (392)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~--------  227 (392)
                      +|+|++++|++++.|++|++||..++  +++..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++        
T Consensus       160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~  239 (330)
T 2hes_X          160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW  239 (330)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence            99999999999999999999999876  6788899999999999999543 568999999999999998764        


Q ss_pred             ceeeeecc-cccceeEEEEcCCCeEEEEcC
Q psy17243        228 GEEHFLAG-HLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       228 ~~~~~~~~-~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .....+.. |...|.+++|++++ +++++.
T Consensus       240 ~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~  268 (330)
T 2hes_X          240 VCEAILPDVHKRQVYNVAWGFNG-LIASVG  268 (330)
T ss_dssp             EEEEECCSCCSSCEEEEEECTTS-CEEEEE
T ss_pred             EEeeecccccccceEEEEEcCCC-EEEEEe
Confidence            33445554 88999999999877 455543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-42  Score=337.49  Aligned_cols=381  Identities=13%  Similarity=0.057  Sum_probs=265.8

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|+||+..+.+....+. |..+|.+++|+| +++|++++.|++|++||+++++++..+. |...|++++|+|++
T Consensus        34 sgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g  110 (902)
T 2oaj_A           34 IATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASL  110 (902)
T ss_dssp             EEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTC
T ss_pred             EEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCC
Confidence            47899999999998877666554 888999999999 7899999999999999999999998886 77899999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceee--------------eecccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCCCcc
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLL--------------YSALGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~--------------~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~  145 (392)
                      ++|++|+.||.|++||+++++..              ..+..++.+++|+|+ +..+++++.|+.| +||++........
T Consensus       111 ~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~  189 (902)
T 2oaj_A          111 DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSF  189 (902)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEE
T ss_pred             CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEE
Confidence            99999999999999999988753              123457899999996 5789999999999 9999854322111


Q ss_pred             eee---------------eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEE--E---ec-------------
Q psy17243        146 RFT---------------VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV--L---VG-------------  192 (392)
Q Consensus       146 ~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~---~~-------------  192 (392)
                      ...               ..|...|.+++|+|++++|++++.||.|++||+++++++..  +   ..             
T Consensus       190 ~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~  269 (902)
T 2oaj_A          190 IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSST  269 (902)
T ss_dssp             CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSS
T ss_pred             ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCcc
Confidence            100               12357799999999999999999999999999999887654  2   11             


Q ss_pred             CCCceeEEEEecC----CCcEEEEecCC-----CeEEEEECC------------------CCceeeeec-ccccceeEEE
Q psy17243        193 HTDHVSCVAVAVT----NKSLVVSGSKD-----SNLIVWDME------------------TGGEEHFLA-GHLGCVTCVK  244 (392)
Q Consensus       193 ~~~~v~~~~~~~~----~~~~l~~~~~d-----g~i~iwd~~------------------~~~~~~~~~-~~~~~v~~~~  244 (392)
                      |...|++++|++.    ++.+|++|+.|     ..+.+|++.                  +++....+. .+...|..+.
T Consensus       270 ~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  349 (902)
T 2oaj_A          270 NAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNIL  349 (902)
T ss_dssp             CCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEE
T ss_pred             ccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEE
Confidence            3457999999742    23678888665     378999852                  222233332 2344555555


Q ss_pred             Ec--------------------CCCeEEEEcCCCCCCCCCCCc-cccccccccccceeEEE-------------------
Q psy17243        245 LA--------------------GDGTVAMSDLPPSRPAGPKRP-LRRLLKKEVSLDTYTWQ-------------------  284 (392)
Q Consensus       245 ~~--------------------~dg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------------  284 (392)
                      +.                    .||.+.+++...+........ ...+......+....+.                   
T Consensus       350 ~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~  429 (902)
T 2oaj_A          350 PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDY  429 (902)
T ss_dssp             ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCC
T ss_pred             ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCC
Confidence            43                    345566665533211110000 00000000011111100                   


Q ss_pred             eccCCcceeEEEeecccccceeEEEeeccccceecceeccC------------------CCC------CCChhhhhhhcc
Q psy17243        285 RKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNV------------------GSQ------GLGPEQAALAQS  340 (392)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~------------------~~~------~~s~dg~~la~s  340 (392)
                      ...||....   ..+...++++++++++.|+++++|.....                  ++.      +|+|||++|| +
T Consensus       430 ~l~G~~~~v---~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LA-s  505 (902)
T 2oaj_A          430 LLKGGVRTK---RQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELA-V  505 (902)
T ss_dssp             SCCCSBCCC---CCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEE-E
T ss_pred             cccCCcCCC---CcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEE-E
Confidence            011222111   12234568999999999999999985321                  222      8999999999 9


Q ss_pred             cChHHHHHHhhCCCCCCcc-----------------------------------------cccccc-ccccCcccccccc
Q psy17243        341 QHFDQLEALWNKKSPPRSR-----------------------------------------RFEHSM-SKQNSYSSRQHSV  378 (392)
Q Consensus       341 ~~~d~~i~~Wd~~~~~~~~-----------------------------------------~~~~~~-~~~~~~~~~~fsp  378 (392)
                      |+.|++|+|||+.+++...                                         .....+ .+...+.+++|||
T Consensus       506 gs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp  585 (902)
T 2oaj_A          506 SIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN  585 (902)
T ss_dssp             EETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB
T ss_pred             EecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC
Confidence            9999999999998663100                                         001112 2455688899999


Q ss_pred             CccCCCCccccc
Q psy17243        379 DTDELSSPVDEF  390 (392)
Q Consensus       379 dg~~l~~~~~d~  390 (392)
                      || +||+|+.|.
T Consensus       586 dG-~lAsgs~D~  596 (902)
T 2oaj_A          586 IG-FVGIAYAAG  596 (902)
T ss_dssp             TS-EEEEEETTS
T ss_pred             Cc-EEEEEeCCC
Confidence            99 999998874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-42  Score=302.68  Aligned_cols=237  Identities=16%  Similarity=0.269  Sum_probs=200.4

Q ss_pred             ccceeeeccCCcCeeEEEe-----cC-CCCeEEEEeCCCeEEEEeCCCC-------ceeEEecccccceEEEEEecCCCE
Q psy17243         16 HELQSTMEGHLNTVSCVAI-----SP-NSIFAVSGSEDNTAKVWGLTLG-------SVVSTFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~-----~~-~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      .+....+++|...|++++|     ++ ++++|++|+.|++|++||+.+.       .....+.+|...|.+++|+|++.+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            3456778999999999999     77 8999999999999999998753       456778899999999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEE
Q psy17243         83 VVTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFT  159 (392)
Q Consensus        83 l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~  159 (392)
                      +++++.|+.|++||+++++.+..   +...+.+++|+|++++|++++.|+.|++||+.... .........|...|.+++
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeee
Confidence            99999999999999999887654   45578999999999999999999999999986221 111111125788899999


Q ss_pred             EEcCC----------CEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC-c
Q psy17243        160 VTWDS----------QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG-G  228 (392)
Q Consensus       160 ~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~  228 (392)
                      |+|++          .+|++++.|+.|++|| .+.+....+.+|...|.+++|+ +++.+|++|+.||.|++||+.+. .
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~~~~~  247 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSIS-PNGKYIATGGKDKKLLIWDILNLTY  247 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTCEEEEEESSCCSS
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEEC-CCCCEEEEEcCCCeEEEEECCCCcc
Confidence            99986          7999999999999999 5567788889999999999999 78899999999999999999543 3


Q ss_pred             eeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        229 EEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       229 ~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ....+ .+...|.+++|+|++.+++.+.
T Consensus       248 ~~~~~-~~~~~v~~v~~sp~~~~la~~~  274 (343)
T 2xzm_R          248 PQREF-DAGSTINQIAFNPKLQWVAVGT  274 (343)
T ss_dssp             CSEEE-ECSSCEEEEEECSSSCEEEEEE
T ss_pred             cceee-cCCCcEEEEEECCCCCEEEEEC
Confidence            43343 3556799999999999888764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.3e-42  Score=298.49  Aligned_cols=239  Identities=23%  Similarity=0.372  Sum_probs=207.0

Q ss_pred             CCccceeeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCc-----eeEEecccccceEEEEEecCCCEEEEEe
Q psy17243         14 NSHELQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGS-----VVSTFKSHQSTILAVAVLSDSRRVVTSD   87 (392)
Q Consensus        14 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~   87 (392)
                      ++.++..+|++|.+.|++++|+|+ +++|+||+.|++|+|||+.+.+     +...+.+|...|.+++|+|++++|++++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence            455677789999999999999997 6899999999999999987653     4677889999999999999999999999


Q ss_pred             CCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCC
Q psy17243         88 KAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS  164 (392)
Q Consensus        88 ~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (392)
                      .|+.|++|+..........   ........+++++++|++++.|+.+++||.....  ........|...+..++|++++
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC--KYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--EEEECSSSCSSCEEEEEECSCS
T ss_pred             ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc--eEEEEeccccCcccceEEccCC
Confidence            9999999999988765443   3466788899999999999999999999986322  1222334678899999998864


Q ss_pred             --CEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeE
Q psy17243        165 --QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTC  242 (392)
Q Consensus       165 --~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  242 (392)
                        .++++++.|+.|++||+++++.+..+.+|...|++++|+ +++.+|++++.||.|++||+++.+.+..+.. ...|.+
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~  261 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINA  261 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEe
Confidence              578899999999999999999999999999999999999 6788999999999999999999999888874 468999


Q ss_pred             EEEcCCCeEEEEcC
Q psy17243        243 VKLAGDGTVAMSDL  256 (392)
Q Consensus       243 ~~~~~dg~~~~~~~  256 (392)
                      +.|+|++.+++.+.
T Consensus       262 ~~~~~~~~~~~~~~  275 (340)
T 4aow_A          262 LCFSPNRYWLCAAT  275 (340)
T ss_dssp             EEECSSSSEEEEEE
T ss_pred             eecCCCCceeeccC
Confidence            99999998877653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.2e-43  Score=309.10  Aligned_cols=245  Identities=15%  Similarity=0.172  Sum_probs=190.0

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeC------CCeEEEEeCCCCcee----EEecccccceEEEE
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSE------DNTAKVWGLTLGSVV----STFKSHQSTILAVA   75 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~   75 (392)
                      .....|++...    ....|...|++++|+|||++|++++.      |+.|++|+..++...    .....|...|.+++
T Consensus        26 ~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~  101 (357)
T 4g56_B           26 SKGSAWGRPVT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVA  101 (357)
T ss_dssp             ------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEE
T ss_pred             ccccccCCCCC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEE
Confidence            34455555432    23469999999999999999999997      788999998877543    33446888999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCceeee-------ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQLLY-------SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      |+|+++ +++++.||.|++||+.+++.+.       .+...+.+++|+|++++|++++.|+.|++||+++.   ......
T Consensus       102 ~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~---~~~~~~  177 (357)
T 4g56_B          102 WVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK---AVLKSY  177 (357)
T ss_dssp             EETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT---EEEEEE
T ss_pred             EcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---cEEEEE
Confidence            999874 6678889999999998876432       34568999999999999999999999999999743   344455


Q ss_pred             eccccceEEEEEEcCCC-EEEEeeCCCcEEEEEcCCCeEEEEEe--cCCCceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        149 VSHSEEITCFTVTWDSQ-YLITGSRDMSLKVWQVVGGKLAQVLV--GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      ..|...|.+++|++++. ++++++.|+.|++||++++++...+.  .|...+++++|+|.++.+|++|+.|+.|++||++
T Consensus       178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~  257 (357)
T 4g56_B          178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK  257 (357)
T ss_dssp             CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred             cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence            57899999999999874 78999999999999999988766543  4667899999998788899999999999999999


Q ss_pred             CCceeeeecccccceeEEEEcCCC-eEEEEcCCC
Q psy17243        226 TGGEEHFLAGHLGCVTCVKLAGDG-TVAMSDLPP  258 (392)
Q Consensus       226 ~~~~~~~~~~~~~~v~~~~~~~dg-~~~~~~~~~  258 (392)
                      +++++..+.+|...|++++|+|++ ++++++..+
T Consensus       258 ~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D  291 (357)
T 4g56_B          258 NPDSAQTSAVHSQNITGLAYSYHSSPFLASISED  291 (357)
T ss_dssp             CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence            999999999999999999999987 567776544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-40  Score=291.80  Aligned_cols=252  Identities=20%  Similarity=0.302  Sum_probs=224.6

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC------ceeEEecccccceEEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG------SVVSTFKSHQSTILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~   74 (392)
                      ||+.||+|++||..+++....+..|...|.+++|+|++.+|++++.|+.+++|++...      .....+..|...|.++
T Consensus        81 s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~  160 (354)
T 2pbi_B           81 SSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSAC  160 (354)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEE
T ss_pred             EEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEE
Confidence            5789999999999999999999999999999999999999999999999999998644      3456677899999999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCceeeeecc---cceeEEEEeC--CCCEEEEecCCCcEEEEeCCCCCCCCcceeee
Q psy17243         75 AVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL---GPSKCLTVTH--NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV  149 (392)
Q Consensus        75 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  149 (392)
                      .|+|++..|++++.|++|++||+++++.+..+.   ..+.++.++|  ++++|++++.|+.|++||+++.   .......
T Consensus       161 ~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---~~~~~~~  237 (354)
T 2pbi_B          161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---QCVQAFE  237 (354)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---CEEEEEC
T ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---cEEEEec
Confidence            999999999999999999999999998776544   4678888877  5689999999999999999854   3344456


Q ss_pred             ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecC--CCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH--TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      .|...|.+++|+|++++|++++.|++|++||+++++.+..+..+  ...+.+++|+ +++.+|++|+.|+.|++||+.++
T Consensus       238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~l~~g~~d~~i~vwd~~~~  316 (354)
T 2pbi_B          238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS-LSGRLLFAGYNDYTINVWDVLKG  316 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe-CCCCEEEEEECCCcEEEEECCCC
Confidence            78999999999999999999999999999999999887777543  3478899999 78889999999999999999999


Q ss_pred             ceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        228 GEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       228 ~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +.+..+.+|...|.+++|+|||++++++.
T Consensus       317 ~~~~~l~~h~~~v~~l~~spdg~~l~sgs  345 (354)
T 2pbi_B          317 SRVSILFGHENRVSTLRVSPDGTAFCSGS  345 (354)
T ss_dssp             SEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             ceEEEEECCCCcEEEEEECCCCCEEEEEc
Confidence            99999999999999999999999888764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.6e-41  Score=343.59  Aligned_cols=340  Identities=20%  Similarity=0.238  Sum_probs=275.3

Q ss_pred             cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCc---
Q psy17243         24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA---  100 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---  100 (392)
                      +|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|...|.+++|+|+++.|++++.|+.|++|++.+.   
T Consensus       838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~  917 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN  917 (1249)
T ss_dssp             SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSC
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccccee
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999997532   


Q ss_pred             -------------------------------------eeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCC
Q psy17243        101 -------------------------------------QLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKD  143 (392)
Q Consensus       101 -------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  143 (392)
                                                           .........+.+++++|+++++++|+.+|.|++||+.+.   .
T Consensus       918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~---~  994 (1249)
T 3sfz_A          918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN---R  994 (1249)
T ss_dssp             CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT---S
T ss_pred             eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC---c
Confidence                                                 111122346789999999999999999999999999744   3


Q ss_pred             cceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEE
Q psy17243        144 DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD  223 (392)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  223 (392)
                      .......|...|.+++|+|++++|++++.||.|++||+.+++... +..|...+.+++|+| + ..+++++.||.|++||
T Consensus       995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~-~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A          995 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-D-SRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp             CEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-S-SEEEEEESSSEEEEEE
T ss_pred             eeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-C-CcEEEEECCCcEEEEE
Confidence            344455789999999999999999999999999999999988764 557999999999994 4 4678889999999999


Q ss_pred             CCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeeccccc
Q psy17243        224 METGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERL  303 (392)
Q Consensus       224 ~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (392)
                      +.+++.+..+.+|...|.+++|+|||++++++..++....+........           ....+|...+..+   ...+
T Consensus      1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~-----------~~l~~h~~~v~~~---~~s~ 1137 (1249)
T 3sfz_A         1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL-----------HELKGHNGCVRCS---AFSL 1137 (1249)
T ss_dssp             TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS-----------BCCCCCSSCEEEE---EECS
T ss_pred             CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee-----------eeeccCCCcEEEE---EECC
Confidence            9999999999999999999999999999999887665544332211111           0112333333332   3355


Q ss_pred             ceeEEEeeccccceecceeccC----------------CC---C---CCChhhhhhhcccChHHHHHHhhCCCCCCcccc
Q psy17243        304 KRRFSVSASMEEISKIPIKDNV----------------GS---Q---GLGPEQAALAQSQHFDQLEALWNKKSPPRSRRF  361 (392)
Q Consensus       304 ~~~~~~s~s~d~~~~~~~~~~~----------------~~---~---~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~  361 (392)
                      ++.++++++.|+.+++|.....                ++   +   +|+|||++|+ +++  |.|++||+.++..... 
T Consensus      1138 dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~-s~~--g~v~vwd~~~g~~~~~- 1213 (1249)
T 3sfz_A         1138 DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV-SAG--GYLKWWNVATGDSSQT- 1213 (1249)
T ss_dssp             SSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEE-EES--SSEEEBCSSSCBCCCC-
T ss_pred             CCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEE-ECC--CeEEEEECCCCceeee-
Confidence            7889999999999999975421                11   1   8999999998 654  8999999988876322 


Q ss_pred             ccccccccCccccccccCccCCCCcccc
Q psy17243        362 EHSMSKQNSYSSRQHSVDTDELSSPVDE  389 (392)
Q Consensus       362 ~~~~~~~~~~~~~~fspdg~~l~~~~~d  389 (392)
                        ...+...+.+++|||||++|++++.|
T Consensus      1214 --~~~~~~~i~~~~~s~dg~~l~~~~~d 1239 (1249)
T 3sfz_A         1214 --FYTNGTNLKKIHVSPDFRTYVTVDNL 1239 (1249)
T ss_dssp             --CCCSSCCCCCCEECSSSCCEEEECTT
T ss_pred             --eeccCCcccEEEECCCCCEEEEecCC
Confidence              12234557779999999999988776

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-41  Score=320.25  Aligned_cols=372  Identities=13%  Similarity=0.124  Sum_probs=282.1

Q ss_pred             CCccCCeEEEEECCCc--------cceeeeccCCcCeeEEEecCCCCeEEEEeCC----CeEEEEeCCCCceeEEecccc
Q psy17243          1 MGGMDCLVNVWQMNSH--------ELQSTMEGHLNTVSCVAISPNSIFAVSGSED----NTAKVWGLTLGSVVSTFKSHQ   68 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~   68 (392)
                      +|+.||.|++||+.++        +....+..|...|.+++|+|++++|++++.+    +.|.+||  .++.+..+..|.
T Consensus        83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~  160 (615)
T 1pgu_A           83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS  160 (615)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCS
T ss_pred             EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCC
Confidence            4678999999999754        7777888899999999999999999999987    6888887  678889999999


Q ss_pred             cceEEEEEecCCC-EEEEEeCCCeEEEEEcCCceeeeecc---c---ceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCC
Q psy17243         69 STILAVAVLSDSR-RVVTSDKAGVIAVWVADNAQLLYSAL---G---PSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQT  140 (392)
Q Consensus        69 ~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~---~---~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~  140 (392)
                      ..|.+++|+|+++ .+++++.|+.|++||+.+++.+..+.   .   .+.+++|+|+ +++|++++.|+.|++||+.+.+
T Consensus       161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  240 (615)
T 1pgu_A          161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE  240 (615)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred             ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            9999999999998 89999999999999999988776543   4   6889999999 9999999999999999997543


Q ss_pred             CCCcceee-e---ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecC----CCceeEEEEecCCCcEEEE
Q psy17243        141 HKDDERFT-V---SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH----TDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       141 ~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~  212 (392)
                      .   .... .   .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+    ...+.++.|.  ++.++++
T Consensus       241 ~---~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~  314 (615)
T 1pgu_A          241 F---LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--GNGRIIS  314 (615)
T ss_dssp             E---EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE--ETTEEEE
T ss_pred             E---eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC--CCCeEEE
Confidence            2   2222 3   788999999999 9999999999999999999999999988876    3667788875  6788999


Q ss_pred             ecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCc-----------------cccccccc
Q psy17243        213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRP-----------------LRRLLKKE  275 (392)
Q Consensus       213 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~  275 (392)
                      ++.||.|++||+.+++.+..+.+|...|.+++| |+   ++++..++....+...                 ...+....
T Consensus       315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~  390 (615)
T 1pgu_A          315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS  390 (615)
T ss_dssp             EETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE
T ss_pred             EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe
Confidence            999999999999999999999999999999999 76   3333332222111100                 00000000


Q ss_pred             cccceeEEEec----------------------------------cCCcceeEE----EeecccccceeEEEeecc-ccc
Q psy17243        276 VSLDTYTWQRK----------------------------------YGHLTSSIM----MAAVDERLKRRFSVSASM-EEI  316 (392)
Q Consensus       276 ~~~~~~~~~~~----------------------------------~~~~~~~~~----~~~~~~~~~~~~~~s~s~-d~~  316 (392)
                      ..-....|...                                  .+.....+.    .......  +.++++++. |+.
T Consensus       391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~  468 (615)
T 1pgu_A          391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNT  468 (615)
T ss_dssp             TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSC
T ss_pred             CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCe
Confidence            00001111110                                  110000000    0000000  567888988 999


Q ss_pred             eecceecc--------CCCC------CCChhhhhhhcccChHHHHHHhhCCCCCCccccccccc-cccCcccccccc---
Q psy17243        317 SKIPIKDN--------VGSQ------GLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMS-KQNSYSSRQHSV---  378 (392)
Q Consensus       317 ~~~~~~~~--------~~~~------~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~-~~~~~~~~~fsp---  378 (392)
                      +++|....        .++.      +|+|||++|+ +++.|+.|++||+.+++....+   .. +...+..++|+|   
T Consensus       469 i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~i~iw~~~~~~~~~~~---~~~h~~~v~~~~~sp~~~  544 (615)
T 1pgu_A          469 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA-AGDVMGKILLYDLQSREVKTSR---WAFRTSKINAISWKPAEK  544 (615)
T ss_dssp             EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEEEECC---SCCCSSCEEEEEECCCC-
T ss_pred             EEEEECCCccccccccCCccCceEEEEECCCCCEEE-EcCCCCeEEEeeCCCCcceeEe---ecCCCCceeEEEEcCccc
Confidence            99987531        1222      8999999999 9999999999999887763321   11 455688899999   


Q ss_pred             -------CccCCCCccccc
Q psy17243        379 -------DTDELSSPVDEF  390 (392)
Q Consensus       379 -------dg~~l~~~~~d~  390 (392)
                             ||++||+++.|.
T Consensus       545 ~~~~~~~~~~~l~~~~~dg  563 (615)
T 1pgu_A          545 GANEEEIEEDLVATGSLDT  563 (615)
T ss_dssp             -----CCSCCEEEEEETTS
T ss_pred             cccccccCCCEEEEEcCCC
Confidence                   999999988774

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-42  Score=311.09  Aligned_cols=231  Identities=15%  Similarity=0.256  Sum_probs=198.0

Q ss_pred             cCeeEEEecCCCC-eEEEE----------eCCCeEEEEeCCCCc---eeEEecccccceEEEEEecCCCEEEEEeCCCeE
Q psy17243         27 NTVSCVAISPNSI-FAVSG----------SEDNTAKVWGLTLGS---VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVI   92 (392)
Q Consensus        27 ~~v~~~~~~~~~~-~l~~~----------~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   92 (392)
                      ..|.+++|+|+++ +|+++          +.|+.|++||+.+++   .+..+ .|...|.+++|+|++++|++++.|+.|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v   91 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL   91 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence            4688999999987 89999          889999999999876   34444 488999999999999999999999999


Q ss_pred             EEEEcCC----ceeee---ecccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCC------CCCcceeeeccccceEEE
Q psy17243         93 AVWVADN----AQLLY---SALGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQT------HKDDERFTVSHSEEITCF  158 (392)
Q Consensus        93 ~iwd~~~----~~~~~---~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~~~~v~~~  158 (392)
                      ++||+.+    .+.+.   .+...+.+++|+|+ +++|++++.|+.|++||+....      ..........|...|.++
T Consensus        92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (416)
T 2pm9_A           92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL  171 (416)
T ss_dssp             EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred             EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence            9999987    33433   34568899999998 8999999999999999998665      222222234688999999


Q ss_pred             EEEcC-CCEEEEeeCCCcEEEEEcCCCeEEEEEecC------CCceeEEEEecCCCcEEEEecCCC---eEEEEECCCC-
Q psy17243        159 TVTWD-SQYLITGSRDMSLKVWQVVGGKLAQVLVGH------TDHVSCVAVAVTNKSLVVSGSKDS---NLIVWDMETG-  227 (392)
Q Consensus       159 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~-  227 (392)
                      +|+|+ +.+|++++.|+.|++||+++++.+..+..+      ...+.+++|+|.+..++++++.|+   .|++||++++ 
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence            99999 789999999999999999999999888876      789999999966668999999998   9999999986 


Q ss_pred             ceeeeec-ccccceeEEEEcC-CCeEEEEcCCC
Q psy17243        228 GEEHFLA-GHLGCVTCVKLAG-DGTVAMSDLPP  258 (392)
Q Consensus       228 ~~~~~~~-~~~~~v~~~~~~~-dg~~~~~~~~~  258 (392)
                      +.+..+. +|...|.+++|+| ++.+++++..+
T Consensus       252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  284 (416)
T 2pm9_A          252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD  284 (416)
T ss_dssp             SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS
T ss_pred             CCcEEeecCccCceeEEEeCCCCCCeEEEEeCC
Confidence            5677787 8999999999999 89998887644

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.1e-40  Score=291.92  Aligned_cols=244  Identities=23%  Similarity=0.443  Sum_probs=212.0

Q ss_pred             cCCeEEEEECCCccceeeeccCCc------------------CeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLN------------------TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK   65 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~------------------~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~   65 (392)
                      .++.+++|++.+++.+..+..|..                  .|.+++|+|++++|++|+.|+.|++||+++++.+..+.
T Consensus        83 ~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~  162 (393)
T 1erj_A           83 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ  162 (393)
T ss_dssp             CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence            478999999999998888766542                  39999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee--cccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCC
Q psy17243         66 SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS--ALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHK  142 (392)
Q Consensus        66 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~  142 (392)
                      +|...|.+++|+|++++|++++.|+.|++||+++++....  ....+.+++++| ++++|++++.|+.|++||+++....
T Consensus       163 ~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~  242 (393)
T 1erj_A          163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV  242 (393)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE
T ss_pred             cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence            9999999999999999999999999999999999887654  445788999999 8999999999999999999754322


Q ss_pred             Ccc----eeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC------------eEEEEEecCCCceeEEEEecCC
Q psy17243        143 DDE----RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG------------KLAQVLVGHTDHVSCVAVAVTN  206 (392)
Q Consensus       143 ~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------------~~~~~~~~~~~~v~~~~~~~~~  206 (392)
                      ...    ....+|...|.+++|+|++++|++++.|+.|++||+++.            .+...+.+|...|.+++|+ ++
T Consensus       243 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~  321 (393)
T 1erj_A          243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QN  321 (393)
T ss_dssp             EEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEEC-GG
T ss_pred             EeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEEC-CC
Confidence            211    111468899999999999999999999999999999753            3456778899999999999 67


Q ss_pred             CcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCC
Q psy17243        207 KSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGD  248 (392)
Q Consensus       207 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~d  248 (392)
                      +.+|++|+.|+.|++||+.+++++..+.+|...|.+++|+++
T Consensus       322 ~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~  363 (393)
T 1erj_A          322 DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG  363 (393)
T ss_dssp             GCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC
Confidence            889999999999999999999999999999999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-41  Score=324.49  Aligned_cols=361  Identities=11%  Similarity=0.103  Sum_probs=256.1

Q ss_pred             ccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee
Q psy17243         23 EGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL  102 (392)
Q Consensus        23 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  102 (392)
                      .+|...|++++|+|++++||+|+.||.|+||+....+....+. |...|.+++|+| +++|++++.|+.|++||+.+++.
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence            4799999999999999999999999999999998887766665 788999999999 88999999999999999999887


Q ss_pred             eeec--ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcc--------eeeeccccceEEEEEEcC-CCEEEEee
Q psy17243        103 LYSA--LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE--------RFTVSHSEEITCFTVTWD-SQYLITGS  171 (392)
Q Consensus       103 ~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~-~~~l~~~~  171 (392)
                      +..+  ...+.+++|+|+++++++|+.||.|++||++........        ....+|...|.+++|+|+ +..|++|+
T Consensus        92 ~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~  171 (902)
T 2oaj_A           92 LTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY  171 (902)
T ss_dssp             EEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence            6544  457899999999999999999999999999754321000        112468889999999996 57899999


Q ss_pred             CCCcEEEEEcCCCeEEEEEecC------------------CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeee-
Q psy17243        172 RDMSLKVWQVVGGKLAQVLVGH------------------TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF-  232 (392)
Q Consensus       172 ~dg~i~i~d~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-  232 (392)
                      .||.| +||+++++++..+..|                  ...|++++|+ +++.+|++++.||.|++||+++++++.. 
T Consensus       172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~~g~~~~~r  249 (902)
T 2oaj_A          172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDANSGHMIMAR  249 (902)
T ss_dssp             SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence            99999 9999999998888765                  4679999999 6789999999999999999999887653 


Q ss_pred             -e---cc-------------cccceeEEEEc----CCC-eEEEEcCCCCCCCCCCCcccccccc--------c-------
Q psy17243        233 -L---AG-------------HLGCVTCVKLA----GDG-TVAMSDLPPSRPAGPKRPLRRLLKK--------E-------  275 (392)
Q Consensus       233 -~---~~-------------~~~~v~~~~~~----~dg-~~~~~~~~~~~~~~~~~~~~~~~~~--------~-------  275 (392)
                       +   ..             |...|.+++|+    ||+ .+++++..+............+-..        +       
T Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~  329 (902)
T 2oaj_A          250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA  329 (902)
T ss_dssp             CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHH
T ss_pred             eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhc
Confidence             2   11             34579999995    554 5666663322111000000000000        0       


Q ss_pred             cccceeEEEeccCCcceeEEEeecc-------cccceeEEEeeccccceecceec-------------------------
Q psy17243        276 VSLDTYTWQRKYGHLTSSIMMAAVD-------ERLKRRFSVSASMEEISKIPIKD-------------------------  323 (392)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~s~d~~~~~~~~~-------------------------  323 (392)
                      .......+  ..++...+..+....       ...+...+++++.|+.+++|...                         
T Consensus       330 ~~~~~~~~--~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~  407 (902)
T 2oaj_A          330 NPKQMKIF--PLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS  407 (902)
T ss_dssp             SCSEEEEE--CCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred             CccceEEE--ecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence            00000000  001111111111111       01122345555566666655421                         


Q ss_pred             -----------------------cCC------CCCCChhhhhhhcccChHHHHHHhhCCCCCCcc--cccccc------c
Q psy17243        324 -----------------------NVG------SQGLGPEQAALAQSQHFDQLEALWNKKSPPRSR--RFEHSM------S  366 (392)
Q Consensus       324 -----------------------~~~------~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~--~~~~~~------~  366 (392)
                                             ..|      ..+|+|||++|| |++.|++||+||+.++....  .+...+      .
T Consensus       408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la-Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~  486 (902)
T 2oaj_A          408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI-TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA  486 (902)
T ss_dssp             EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE-EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred             EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE-EecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence                                   011      127899999999 99999999999998875311  111111      3


Q ss_pred             cccCccccccccCccCCCCccccc
Q psy17243        367 KQNSYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       367 ~~~~~~~~~fspdg~~l~~~~~d~  390 (392)
                      +...+.+++|||||++||+|+.|.
T Consensus       487 h~~~V~svafspdg~~LAsgs~Dg  510 (902)
T 2oaj_A          487 KELAVDKISFAAETLELAVSIETG  510 (902)
T ss_dssp             SSCCEEEEEEETTTTEEEEEETTS
T ss_pred             CCCceeEEEecCCCCeEEEEecCc
Confidence            345688899999999999988774

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6e-40  Score=283.10  Aligned_cols=250  Identities=18%  Similarity=0.314  Sum_probs=214.2

Q ss_pred             CCccCCeEEEEECCC-----ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEE
Q psy17243          1 MGGMDCLVNVWQMNS-----HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVA   75 (392)
Q Consensus         1 tg~~dg~i~vwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~   75 (392)
                      ||+.|++|++|++..     +..+..+.+|...|.+++|+|++++|++|+.|++|++||+++++.+..+.+|...|.+++
T Consensus        35 s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~  114 (319)
T 3frx_A           35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD  114 (319)
T ss_dssp             EEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEE
Confidence            578999999999864     345678899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCcee--eeecccceeEEEEeCC------CCEEEEecCCCcEEEEeCCCCCCCCccee
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQL--LYSALGPSKCLTVTHN------MKYIVSGDGDNSLRIWPTSPQTHKDDERF  147 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  147 (392)
                      |+|++++|++++.|+.|++||++....  +..+...+.++.+.|.      +..+++++.|+.|++||++..   .....
T Consensus       115 ~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~  191 (319)
T 3frx_A          115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---QIEAD  191 (319)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT---EEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc---hhhee
Confidence            999999999999999999999975433  2234557888999885      458999999999999999743   33344


Q ss_pred             eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        148 TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      ..+|...|.+++|+|++++|++++.||.|++||+++++.+..+.. ...|.+++|+ +++.++++++. +.+++|++..+
T Consensus       192 ~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s-p~~~~la~~~~-~~i~v~~~~~~  268 (319)
T 3frx_A          192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFS-PNRYWLAAATA-TGIKVFSLDPQ  268 (319)
T ss_dssp             ECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEEC-SSSSEEEEEET-TEEEEEEETTE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEc-CCCCEEEEEcC-CCcEEEEeCcC
Confidence            557999999999999999999999999999999999999988875 5689999999 67788887764 56999999887


Q ss_pred             ceeeeec--------ccccceeEEEEcCCCeEEEEcC
Q psy17243        228 GEEHFLA--------GHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       228 ~~~~~~~--------~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ..+..+.        .|...+.+++|+|||++++++.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~  305 (319)
T 3frx_A          269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY  305 (319)
T ss_dssp             EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred             eeeeccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence            7665543        3456788999999999888764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.4e-40  Score=285.03  Aligned_cols=240  Identities=25%  Similarity=0.369  Sum_probs=208.2

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      ......+.+|...|++++|+|++++|++++.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            45567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243         96 VADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus        96 d~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      |+++++.+..+   ...+.++.|+|++++|++++.|+.|++||+++.   ........|..+|.+++|+|++++|++++.
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  169 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---EEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            99998876544   457889999999999999999999999999743   334445578899999999999999999999


Q ss_pred             CCcEEEEEcCCCeEEEEEe-cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccccee---EEEEcCC
Q psy17243        173 DMSLKVWQVVGGKLAQVLV-GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT---CVKLAGD  248 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~---~~~~~~d  248 (392)
                      |+.|++||+++++.+..+. .+...+..++|+ +++.+|++++.|+.|++||+++++.+..+.+|...+.   .....++
T Consensus       170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
T 4ery_A          170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG  248 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCSSCCCEEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS
T ss_pred             CCcEEEEECCCCceeeEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC
Confidence            9999999999998887764 456789999999 6788999999999999999999999988888766433   2233456


Q ss_pred             CeEEEEcCCCC
Q psy17243        249 GTVAMSDLPPS  259 (392)
Q Consensus       249 g~~~~~~~~~~  259 (392)
                      +.+++++..++
T Consensus       249 ~~~l~sg~~dg  259 (312)
T 4ery_A          249 GKWIVSGSEDN  259 (312)
T ss_dssp             SCEEEECCTTS
T ss_pred             CcEEEEECCCC
Confidence            77777765443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.7e-41  Score=296.23  Aligned_cols=253  Identities=21%  Similarity=0.320  Sum_probs=221.5

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc-------eeEEecccccceEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS-------VVSTFKSHQSTILA   73 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~~   73 (392)
                      ||+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.+++||+.+..       ....+.+|.+.|.+
T Consensus        83 s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~  162 (380)
T 3iz6_a           83 SASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS  162 (380)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCC
T ss_pred             EEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEE
Confidence            57899999999999999999999999999999999999999999999999999987532       34567789999999


Q ss_pred             EEEecCC-CEEEEEeCCCeEEEEEcCCceeeeec--------ccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCC
Q psy17243         74 VAVLSDS-RRVVTSDKAGVIAVWVADNAQLLYSA--------LGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKD  143 (392)
Q Consensus        74 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~  143 (392)
                      +.|.|++ ..|++++.|+.|++||+.+++.+..+        ...+.++.+++ ++++|++|+.|+.|++||++...  .
T Consensus       163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~--~  240 (380)
T 3iz6_a          163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS--R  240 (380)
T ss_dssp             CBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC--C
T ss_pred             EEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC--c
Confidence            9999974 57999999999999999999876543        34678888877 88999999999999999997322  2


Q ss_pred             cceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCC-------ceeEEEEecCCCcEEEEecCC
Q psy17243        144 DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTD-------HVSCVAVAVTNKSLVVSGSKD  216 (392)
Q Consensus       144 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~~~~~d  216 (392)
                      ......+|...|.+++|+|++++|++++.|++|++||+++++.+..+..+..       .|++++|+ +++.+|++|+.|
T Consensus       241 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~g~~d  319 (380)
T 3iz6_a          241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS-ISGRLLFAGYSN  319 (380)
T ss_dssp             CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC-SSSSEEEEECTT
T ss_pred             ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC-CCCCEEEEEECC
Confidence            3445567999999999999999999999999999999999999888765432       48999999 788899999999


Q ss_pred             CeEEEEECCCCceeeee----cccccceeEEEEcCCCeEEEEcC
Q psy17243        217 SNLIVWDMETGGEEHFL----AGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       217 g~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      |.|++||+.+++.+..+    .+|.+.|.+++|+|||++++++.
T Consensus       320 g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  363 (380)
T 3iz6_a          320 GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS  363 (380)
T ss_dssp             SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred             CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence            99999999999888766    67999999999999999888864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.3e-40  Score=285.66  Aligned_cols=249  Identities=21%  Similarity=0.365  Sum_probs=207.4

Q ss_pred             CCccCCeEEEEECCCc-------cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEE
Q psy17243          1 MGGMDCLVNVWQMNSH-------ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILA   73 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~   73 (392)
                      ||+.|++|++||+.+.       .....+.+|...|.+++|+|++.+|++++.|++|++||+++++.+..+.+|...|.+
T Consensus        44 sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~  123 (343)
T 2xzm_R           44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYS  123 (343)
T ss_dssp             EEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEE
T ss_pred             EEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEE
Confidence            5789999999998643       456678899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCceeee-----ecccceeEEEEeCCC----------CEEEEecCCCcEEEEeCCC
Q psy17243         74 VAVLSDSRRVVTSDKAGVIAVWVADNAQLLY-----SALGPSKCLTVTHNM----------KYIVSGDGDNSLRIWPTSP  138 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~----------~~l~~~~~d~~i~~~d~~~  138 (392)
                      ++|+|++++|++++.|+.|++||+.......     .+...+.++.|+|++          .++++++.|+.|++||.. 
T Consensus       124 v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-  202 (343)
T 2xzm_R          124 VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-  202 (343)
T ss_dssp             EEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-
T ss_pred             EEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-
Confidence            9999999999999999999999998543322     234568899999986          799999999999999953 


Q ss_pred             CCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC-CeEEEEEecCCCceeEEEEecCCCcEEEEecCCC
Q psy17243        139 QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG-GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                         .........|...|.+++|+|++++|++++.|+.|++||+.+ ......+. +...|.+++|+ +++.+++++ .|+
T Consensus       203 ---~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~s-p~~~~la~~-~d~  276 (343)
T 2xzm_R          203 ---FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFN-PKLQWVAVG-TDQ  276 (343)
T ss_dssp             ---TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEEC-SSSCEEEEE-ESS
T ss_pred             ---CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEEC-CCCCEEEEE-CCC
Confidence               233344557899999999999999999999999999999954 34444443 56679999999 566776654 588


Q ss_pred             eEEEEECCCCceee--eec-----------ccccceeEEEEcCCCeEEEEcC
Q psy17243        218 NLIVWDMETGGEEH--FLA-----------GHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       218 ~i~iwd~~~~~~~~--~~~-----------~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .|++||+.+++...  .+.           +|...|.+++|+|+|++++++.
T Consensus       277 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  328 (343)
T 2xzm_R          277 GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF  328 (343)
T ss_dssp             CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred             CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence            89999998776543  333           5777889999999988777753

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.9e-40  Score=286.31  Aligned_cols=225  Identities=21%  Similarity=0.237  Sum_probs=195.9

Q ss_pred             CCccCCeEEEEECCCccceee----eccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQST----MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAV   76 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~   76 (392)
                      +|+.||.|+|||+.+++....    +.+|...|++++|+|++++|++|+.|++|++||+++++++..+.+|...|.+++|
T Consensus        98 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~  177 (344)
T 4gqb_B           98 VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAA  177 (344)
T ss_dssp             EEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEe
Confidence            478999999999998876654    3479999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCC-EEEEEeCCCeEEEEEcCCceeeeecc-----cceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeee
Q psy17243         77 LSDSR-RVVTSDKAGVIAVWVADNAQLLYSAL-----GPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV  149 (392)
Q Consensus        77 ~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  149 (392)
                      +|++. .|++++.|+.|++||+++++....+.     ..+.+++++| ++++|++|+.|+.|++||+++.+   ......
T Consensus       178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~---~~~~~~  254 (344)
T 4gqb_B          178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS---CVLSSA  254 (344)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEE
T ss_pred             cCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc---EEEEEc
Confidence            99885 78999999999999999998766543     2467899998 45788999999999999998543   344556


Q ss_pred             ccccceEEEEEEcCC-CEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        150 SHSEEITCFTVTWDS-QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       150 ~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      .|...|++++|+|++ ++|++++.|++|++||+++++.. .+.+|...|++++|+|.+..+|++++.|++|++|++.+..
T Consensus       255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            899999999999997 57999999999999999988765 5688999999999997777889999999999999998654


Q ss_pred             e
Q psy17243        229 E  229 (392)
Q Consensus       229 ~  229 (392)
                      .
T Consensus       334 ~  334 (344)
T 4gqb_B          334 L  334 (344)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-41  Score=300.47  Aligned_cols=252  Identities=14%  Similarity=0.258  Sum_probs=219.7

Q ss_pred             CCccCCeEEEEEC----CCcc------ceeeecc----------CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce
Q psy17243          1 MGGMDCLVNVWQM----NSHE------LQSTMEG----------HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV   60 (392)
Q Consensus         1 tg~~dg~i~vwd~----~~~~------~~~~~~~----------h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   60 (392)
                      +|+.||.|++|++    .+++      ....+..          |...|++++|+|++++|++++.||.|++|| .+++.
T Consensus        63 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~  141 (425)
T 1r5m_A           63 YGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGAL  141 (425)
T ss_dssp             EEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCE
T ss_pred             EecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCe
Confidence            4678999999999    8887      4555544          688999999999999999999999999999 77888


Q ss_pred             eEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc---c---------------eeEEEEeCCCCEE
Q psy17243         61 VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG---P---------------SKCLTVTHNMKYI  122 (392)
Q Consensus        61 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~---------------~~~~~~~~~~~~l  122 (392)
                      +..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..   .               +.++.+++++ .+
T Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  220 (425)
T 1r5m_A          142 LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KF  220 (425)
T ss_dssp             EEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EE
T ss_pred             eeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EE
Confidence            999999999999999999999999999999999999999987765443   2               7788898875 58


Q ss_pred             EEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEE
Q psy17243        123 VSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAV  202 (392)
Q Consensus       123 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  202 (392)
                      ++++.++.|++||+...   ........|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|
T Consensus       221 ~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  297 (425)
T 1r5m_A          221 VIPGPKGAIFVYQITEK---TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW  297 (425)
T ss_dssp             EEECGGGCEEEEETTCS---SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEE
T ss_pred             EEEcCCCeEEEEEcCCC---ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEE
Confidence            88999999999999854   333444578899999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCC
Q psy17243        203 AVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       203 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      +| ++ ++++++.|+.|++||+++++.+..+..|...|.+++|+|++++++++..++
T Consensus       298 ~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  352 (425)
T 1r5m_A          298 VG-DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG  352 (425)
T ss_dssp             ET-TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             CC-CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence            94 55 899999999999999999999999999999999999999999999886543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.6e-40  Score=290.99  Aligned_cols=248  Identities=16%  Similarity=0.160  Sum_probs=203.3

Q ss_pred             CCeEEEEECCCcccee----eeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeE----EecccccceEEEEE
Q psy17243          5 DCLVNVWQMNSHELQS----TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS----TFKSHQSTILAVAV   76 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~   76 (392)
                      |+.|++|+..++....    ...+|...|.+++|+|++. +++++.||+|+|||+.+++...    ...+|...|.+++|
T Consensus        69 d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~  147 (357)
T 4g56_B           69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV  147 (357)
T ss_dssp             CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred             cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence            7899999987765433    3456999999999999986 5567789999999998886543    34478999999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCC-EEEEecCCCcEEEEeCCCCCCCCcceeeeccc
Q psy17243         77 LSDSRRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMK-YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS  152 (392)
Q Consensus        77 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  152 (392)
                      +|++++|++++.|+.|++||+++++.+..+   ...+.+++|++++. ++++++.|+.|++||+++.+...... ...+.
T Consensus       148 spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~  226 (357)
T 4g56_B          148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID-FCASD  226 (357)
T ss_dssp             CSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC-CTTCC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee-ecccc
Confidence            999999999999999999999999887665   45788999999875 78999999999999998654433322 23567


Q ss_pred             cceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee
Q psy17243        153 EEITCFTVTWD-SQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       153 ~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      ..+.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|.++.+|++++.|++|+|||+++++.+.
T Consensus       227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~  306 (357)
T 4g56_B          227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR  306 (357)
T ss_dssp             SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred             ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence            78999999997 56899999999999999999999999999999999999997777899999999999999999988776


Q ss_pred             eecccccceeEEEEcC-CCeEEEEc
Q psy17243        232 FLAGHLGCVTCVKLAG-DGTVAMSD  255 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~-dg~~~~~~  255 (392)
                      .+ +|...|++++|+| |+.+++++
T Consensus       307 ~~-~H~~~V~~vafsP~d~~~l~s~  330 (357)
T 4g56_B          307 DL-SHRDFVTGVAWSPLDHSKFTTV  330 (357)
T ss_dssp             EC-CCSSCEEEEEECSSSTTEEEEE
T ss_pred             EC-CCCCCEEEEEEeCCCCCEEEEE
Confidence            55 7999999999998 77777765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-40  Score=287.02  Aligned_cols=253  Identities=19%  Similarity=0.267  Sum_probs=209.5

Q ss_pred             CCccCCeEEEEECCCcccee---eeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC--ceeEEecccccceEEEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQS---TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--SVVSTFKSHQSTILAVA   75 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~   75 (392)
                      +|+.|+.|+|||+.+++...   ...+|...|.+++|+|++++|++|+.|++|++|++..+  +++..+.+|...|.+++
T Consensus        33 s~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~  112 (345)
T 3fm0_A           33 SCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVA  112 (345)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEE
T ss_pred             EEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEE
Confidence            57899999999998775432   23679999999999999999999999999999998876  45778899999999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCcee---e---eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeee
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQL---L---YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV  149 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~---~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  149 (392)
                      |+|++++|++++.|+.|++||+.++..   +   ..+...+.+++|+|++++|++++.|+.|++||.+.... .......
T Consensus       113 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~-~~~~~~~  191 (345)
T 3fm0_A          113 WAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW-VCCATLE  191 (345)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE-EEEEEEC
T ss_pred             EeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE-EEEEEec
Confidence            999999999999999999999987632   2   23456789999999999999999999999999864321 1223445


Q ss_pred             ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC---------------eEEEEEec-CCCceeEEEEecCCCcEEEEe
Q psy17243        150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG---------------KLAQVLVG-HTDHVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------------~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~  213 (392)
                      +|...|.+++|+|++++|++++.|++|++||....               +++..+.+ |...|.+++|+ +++..|+++
T Consensus       192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~  270 (345)
T 3fm0_A          192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC-QLTGALATA  270 (345)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC-TTTCCEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe-cCCCEEEEE
Confidence            78999999999999999999999999999997322               23444554 88899999999 667789999


Q ss_pred             cCCCeEEEEECCCCce---------eeeecccccceeEEEEcCCCe-EEEEc
Q psy17243        214 SKDSNLIVWDMETGGE---------EHFLAGHLGCVTCVKLAGDGT-VAMSD  255 (392)
Q Consensus       214 ~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~~~dg~-~~~~~  255 (392)
                      +.|+.|++|+...+..         .....+|...|++++|+|++. +++++
T Consensus       271 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~  322 (345)
T 3fm0_A          271 CGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC  322 (345)
T ss_dssp             ETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred             eCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence            9999999999875431         123357899999999999874 66664

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3e-41  Score=317.55  Aligned_cols=372  Identities=15%  Similarity=0.113  Sum_probs=275.0

Q ss_pred             cCCeEEEEECCCc----cceeeeccCCcC-eeEEEecC--CCCeEEEEeCCCeEEEEeCCCC--------ceeEEecccc
Q psy17243          4 MDCLVNVWQMNSH----ELQSTMEGHLNT-VSCVAISP--NSIFAVSGSEDNTAKVWGLTLG--------SVVSTFKSHQ   68 (392)
Q Consensus         4 ~dg~i~vwd~~~~----~~~~~~~~h~~~-v~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~--------~~~~~~~~~~   68 (392)
                      .++.|++||+.++    +....+.+|... |++++|+|  ++++|++++.||.|++||+.++        +.+..+..|.
T Consensus        37 ~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~  116 (615)
T 1pgu_A           37 CGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA  116 (615)
T ss_dssp             ETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS
T ss_pred             cCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccc
Confidence            3789999999999    899999999999 99999999  9999999999999999999754        6777888899


Q ss_pred             cceEEEEEecCCCEEEEEeCC----CeEEEEEcCCceeee---ecccceeEEEEeCCCC-EEEEecCCCcEEEEeCCCCC
Q psy17243         69 STILAVAVLSDSRRVVTSDKA----GVIAVWVADNAQLLY---SALGPSKCLTVTHNMK-YIVSGDGDNSLRIWPTSPQT  140 (392)
Q Consensus        69 ~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~  140 (392)
                      ..|.+++|+|++++|++++.+    +.|++||.  ++.+.   .+...+.+++|+|+++ .+++++.|+.|++||+... 
T Consensus       117 ~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-  193 (615)
T 1pgu_A          117 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-  193 (615)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-
T ss_pred             ccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-
Confidence            999999999999999999988    68888884  33433   3455789999999998 8999999999999998733 


Q ss_pred             CCCcceeeecccc---ceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCCeEEEEE-e---cCCCceeEEEEecCCCcEEEE
Q psy17243        141 HKDDERFTVSHSE---EITCFTVTWD-SQYLITGSRDMSLKVWQVVGGKLAQVL-V---GHTDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       141 ~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~~  212 (392)
                        ........|..   .|.+++|+|+ +++|++++.|+.|++||+++++.+..+ .   .|...|.+++|+  ++.+|++
T Consensus       194 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~  269 (615)
T 1pgu_A          194 --KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFAT  269 (615)
T ss_dssp             --EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEE
T ss_pred             --ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEE
Confidence              33344456777   8999999999 999999999999999999999999998 6   899999999998  7889999


Q ss_pred             ecCCCeEEEEECCCCceeeeeccc----ccceeEEEEcCCCeEEEEcCCCCCCCCCCCc----cccccccccccceeE--
Q psy17243        213 GSKDSNLIVWDMETGGEEHFLAGH----LGCVTCVKLAGDGTVAMSDLPPSRPAGPKRP----LRRLLKKEVSLDTYT--  282 (392)
Q Consensus       213 ~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--  282 (392)
                      ++.|+.|++||+++++.+..+..+    ...+.++.|+ ++.+++++..++....+...    ...+......+....  
T Consensus       270 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  348 (615)
T 1pgu_A          270 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN  348 (615)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETT
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEec
Confidence            999999999999999998888766    4678888886 66666666544433221111    011111111111111  


Q ss_pred             -------------EEec---cCCcceeEEEeecccccceeEEEeeccccceecceeccCC------CCCCChh-------
Q psy17243        283 -------------WQRK---YGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVG------SQGLGPE-------  333 (392)
Q Consensus       283 -------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~------~~~~s~d-------  333 (392)
                                   |...   .+|...+..+..    .++.++++++.|+.+++|......      ..+|+|+       
T Consensus       349 ~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~----~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  424 (615)
T 1pgu_A          349 PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN----SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT  424 (615)
T ss_dssp             TTEEEETTSCEEETTTTEEECCCCSCEEEEEC----CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEE
T ss_pred             CcEEECCCCeEEEEEchhhcCcccCceEEEEE----CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEe
Confidence                         1000   223222222222    124467777788888877654211      0023333       


Q ss_pred             -------------------------------hhhhhcccCh-HHHHHHhhCCCCCCccccccccccccCccccccccCcc
Q psy17243        334 -------------------------------QAALAQSQHF-DQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTD  381 (392)
Q Consensus       334 -------------------------------g~~la~s~~~-d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~  381 (392)
                                                     +++|+ +++. |+.|++||+.++....  .....+...+..++|||||+
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~  501 (615)
T 1pgu_A          425 NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVA-VGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISPSET  501 (615)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEE-EEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECTTSS
T ss_pred             CCCceEEEeccCCceeeecccCCCceEEEEcCCEEE-EeecCCCeEEEEECCCccccc--cccCCccCceEEEEECCCCC
Confidence                                           55555 5666 8888888887654311  12223445677799999999


Q ss_pred             CCCCccccc
Q psy17243        382 ELSSPVDEF  390 (392)
Q Consensus       382 ~l~~~~~d~  390 (392)
                      +|++++.|.
T Consensus       502 ~l~~~~~dg  510 (615)
T 1pgu_A          502 YIAAGDVMG  510 (615)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEcCCCC
Confidence            999987763

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-41  Score=305.67  Aligned_cols=333  Identities=14%  Similarity=0.178  Sum_probs=240.4

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCC-eEEEEeCCCeEEEEeC----CCCc------eeEEecc---------
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSI-FAVSGSEDNTAKVWGL----TLGS------VVSTFKS---------   66 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~----~~~~------~~~~~~~---------   66 (392)
                      .+.+|+.+..........|..+|++++|+|+++ +|++++.||.|++|++    .+++      ....+..         
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG  105 (425)
T ss_dssp             --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred             ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence            456787766555555556779999999999999 9999999999999999    8888      4555554         


Q ss_pred             -cccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCC
Q psy17243         67 -HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHK  142 (392)
Q Consensus        67 -~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  142 (392)
                       |...|.+++|+|++++|++++.||.|++|| .+++.+..   +...+.+++|+|++++|++++.|+.|++||+..... 
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-  183 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-  183 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE-
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-
Confidence             677999999999999999999999999999 45544443   456889999999999999999999999999975432 


Q ss_pred             Ccceeeeccccc---------------eEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCC
Q psy17243        143 DDERFTVSHSEE---------------ITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNK  207 (392)
Q Consensus       143 ~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (392)
                        ......+...               +.+++|++++ .+++++.++.|++||+++++.+..+..|...|.+++|+ +++
T Consensus       184 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~  259 (425)
T 1r5m_A          184 --MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTN  259 (425)
T ss_dssp             --EEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-TTT
T ss_pred             --EEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC-CCC
Confidence              2222233333               8899999875 68889999999999999999999999999999999999 677


Q ss_pred             cEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEecc
Q psy17243        208 SLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKY  287 (392)
Q Consensus       208 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (392)
                      .+|++++.|+.|++||+++++.+..+..|...|.+++|+|++ +++++..++.                   ...|....
T Consensus       260 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-------------------i~i~d~~~  319 (425)
T 1r5m_A          260 KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-------------------VRLWSLKQ  319 (425)
T ss_dssp             TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-------------------EEEEETTT
T ss_pred             CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-------------------EEEEECCC
Confidence            899999999999999999999999999999999999999999 6666543221                   11222211


Q ss_pred             CCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCC----------
Q psy17243        288 GHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPR----------  357 (392)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~----------  357 (392)
                      +.....               +...         .......+|+|++++|+ +++.|+.|++||+.+...          
T Consensus       320 ~~~~~~---------------~~~~---------~~~i~~~~~s~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~  374 (425)
T 1r5m_A          320 NTLLAL---------------SIVD---------GVPIFAGRISQDGQKYA-VAFMDGQVNVYDLKKLNSKSRSLYGNRD  374 (425)
T ss_dssp             TEEEEE---------------EECT---------TCCEEEEEECTTSSEEE-EEETTSCEEEEECHHHHC----------
T ss_pred             CcEeEe---------------cccC---------CccEEEEEEcCCCCEEE-EEECCCeEEEEECCCCccceeeeecccc
Confidence            110000               0000         00001125778888877 777888888888765541          


Q ss_pred             ------ccccccccccc--c-CccccccccCccCCCCccccc
Q psy17243        358 ------SRRFEHSMSKQ--N-SYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       358 ------~~~~~~~~~~~--~-~~~~~~fspdg~~l~~~~~d~  390 (392)
                            +......+..+  . .+..++|+|||++||+++.|.
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  416 (425)
T 1r5m_A          375 GILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ  416 (425)
T ss_dssp             ----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS
T ss_pred             cccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc
Confidence                  00012223322  2 677799999999999887764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-40  Score=295.37  Aligned_cols=293  Identities=13%  Similarity=0.134  Sum_probs=236.4

Q ss_pred             EECCCccceeeeccCCcCeeEEEecCCC-CeEEEEeCCCeEEEEeCCCCceeEEec--ccccceEEEEEec-CCCEEEEE
Q psy17243         11 WQMNSHELQSTMEGHLNTVSCVAISPNS-IFAVSGSEDNTAKVWGLTLGSVVSTFK--SHQSTILAVAVLS-DSRRVVTS   86 (392)
Q Consensus        11 wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~   86 (392)
                      |++.+.+....+.+|...|++++|+|++ ++|++|+.||.|++||+.+++....+.  +|...|.+++|+| ++++|+++
T Consensus        58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred             ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence            3445667778889999999999999998 899999999999999999888877765  5999999999999 67999999


Q ss_pred             eCCCeEEEEEcCCceeeee-----cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEE
Q psy17243         87 DKAGVIAVWVADNAQLLYS-----ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVT  161 (392)
Q Consensus        87 ~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (392)
                      +.|+.|++||+.+......     ....+.+++|+|++++|++++.|+.|++||++    .........|...|.+++|+
T Consensus       138 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~h~~~v~~~~~~  213 (383)
T 3ei3_B          138 SIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD----GHEIFKEKLHKAKVTHAEFN  213 (383)
T ss_dssp             ETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT----SCEEEEEECSSSCEEEEEEC
T ss_pred             eCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC----CCEEEEeccCCCcEEEEEEC
Confidence            9999999999997543221     12458999999999999999999999999984    22344455789999999999


Q ss_pred             cCCC-EEEEeeCCCcEEEEEcCC----CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccc
Q psy17243        162 WDSQ-YLITGSRDMSLKVWQVVG----GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH  236 (392)
Q Consensus       162 ~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  236 (392)
                      |+++ +|++++.|+.|++||+++    +.++..+ +|...|.+++|+|.++.+|++++.|+.|++||+++++.+..+..|
T Consensus       214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  292 (383)
T 3ei3_B          214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH  292 (383)
T ss_dssp             SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence            9998 999999999999999997    5666666 699999999999438899999999999999999998877766654


Q ss_pred             cc-------ceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEE
Q psy17243        237 LG-------CVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSV  309 (392)
Q Consensus       237 ~~-------~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (392)
                      ..       .+. +.|+|++.+++.                                                       
T Consensus       293 ~~~~~~~~~~~~-~~~~p~~~~~~~-------------------------------------------------------  316 (383)
T 3ei3_B          293 PHRQFQHLTPIK-ATWHPMYDLIVA-------------------------------------------------------  316 (383)
T ss_dssp             CBCCCTTSCCCC-CEECSSSSEEEE-------------------------------------------------------
T ss_pred             cccccccccceE-EeccCCCCceEE-------------------------------------------------------
Confidence            32       222 345554444333                                                       


Q ss_pred             eeccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCcc
Q psy17243        310 SASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPV  387 (392)
Q Consensus       310 s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~  387 (392)
                                         +|+|||++   +++.|+.|++||+.+++....+.. ......+..++|+|||++||+++
T Consensus       317 -------------------~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l~~-~~~~~~~~~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          317 -------------------GRYPDDQL---LLNDKRTIDIYDANSGGLVHQLRD-PNAAGIISLNKFSPTGDVLASGM  371 (383)
T ss_dssp             -------------------ECBCCTTT---CTTCCCCEEEEETTTCCEEEEECB-TTBCSCCCEEEECTTSSEEEEEE
T ss_pred             -------------------EecCCccc---ccCCCCeEEEEecCCCceeeeecC-CCCCceEEEEEEecCccEEEEec
Confidence                               26788888   678999999999988876333211 11223344469999999999886

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.4e-40  Score=291.74  Aligned_cols=230  Identities=26%  Similarity=0.428  Sum_probs=197.5

Q ss_pred             cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccccc------------------ceEEEEEecCCCEEEE
Q psy17243         24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQS------------------TILAVAVLSDSRRVVT   85 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~   85 (392)
                      +|...|.+++|+|+|++|++++ ++.+++|++.+++.+..+..+..                  .|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            5999999999999999999986 68999999999998888765532                  3899999999999999


Q ss_pred             EeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc
Q psy17243         86 SDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW  162 (392)
Q Consensus        86 ~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (392)
                      ++.|+.|++||+.+++.+..   +...+.+++|+|++++|++++.|+.|++||+++...    .....+...+.+++|+|
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~~~  216 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC----SLTLSIEDGVTTVAVSP  216 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----EEEEECSSCEEEEEECS
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee----EEEEEcCCCcEEEEEEC
Confidence            99999999999999887654   445789999999999999999999999999975432    22234667899999999


Q ss_pred             -CCCEEEEeeCCCcEEEEEcCCCeEEEEE-------ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC-------
Q psy17243        163 -DSQYLITGSRDMSLKVWQVVGGKLAQVL-------VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG-------  227 (392)
Q Consensus       163 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------  227 (392)
                       ++++|++++.|+.|++||+++++.+..+       .+|...|.+++|+ +++.+|++++.|+.|++||+++.       
T Consensus       217 ~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~  295 (393)
T 1erj_A          217 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSK  295 (393)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC----------
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence             8999999999999999999999887776       5789999999999 67889999999999999999763       


Q ss_pred             -----ceeeeecccccceeEEEEcCCCeEEEEcCCCC
Q psy17243        228 -----GEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       228 -----~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                           .+...+.+|...|.+++|+|++.+++++..++
T Consensus       296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~  332 (393)
T 1erj_A          296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR  332 (393)
T ss_dssp             -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred             CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence                 34557788999999999999999999986553

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-39  Score=281.46  Aligned_cols=252  Identities=20%  Similarity=0.272  Sum_probs=199.2

Q ss_pred             CCccCCeEEEEECCCc--cceeee-cc-CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC-------CceeEEeccccc
Q psy17243          1 MGGMDCLVNVWQMNSH--ELQSTM-EG-HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL-------GSVVSTFKSHQS   69 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~--~~~~~~-~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~-------~~~~~~~~~~~~   69 (392)
                      +|+.|+.|++||+.++  +....+ .+ |...|.+++|+|++++|++|+.|++|+|||++.       .+.+..+.+|..
T Consensus        29 s~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~  108 (330)
T 2hes_X           29 TGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN  108 (330)
T ss_dssp             EEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----
T ss_pred             EEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCC
Confidence            5789999999999875  445555 44 999999999999999999999999999999853       356778889999


Q ss_pred             ceEEEEEecCCCEEEEEeCCCeEEEEEcCCc----eee---eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCC
Q psy17243         70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNA----QLL---YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHK  142 (392)
Q Consensus        70 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  142 (392)
                      .|.+++|+|++++|++++.|+.|++||+...    +.+   ..+...+.+++|+|++.+|++++.|+.|++||...... 
T Consensus       109 ~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~-  187 (330)
T 2hes_X          109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW-  187 (330)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe-
Confidence            9999999999999999999999999999432    233   34556789999999999999999999999999864311 


Q ss_pred             CcceeeeccccceEEEEEEcC--CCEEEEeeCCCcEEEEEcCCC--------eEEEEEec-CCCceeEEEEecCCCcEEE
Q psy17243        143 DDERFTVSHSEEITCFTVTWD--SQYLITGSRDMSLKVWQVVGG--------KLAQVLVG-HTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~~l~  211 (392)
                      .......+|...|.+++|+|+  +.+|++++.|++|++||++.+        .+...+.. |...|.+++|+ ++ .+|+
T Consensus       188 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~-~~l~  265 (330)
T 2hes_X          188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG-FN-GLIA  265 (330)
T ss_dssp             EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-TT-SCEE
T ss_pred             eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc-CC-CEEE
Confidence            233445579999999999998  678999999999999999754        34445554 89999999999 44 4789


Q ss_pred             EecCCCeEEEEECCCCc--eee-eeccccc-ceeEEEEcC--CCeEEEEc
Q psy17243        212 SGSKDSNLIVWDMETGG--EEH-FLAGHLG-CVTCVKLAG--DGTVAMSD  255 (392)
Q Consensus       212 ~~~~dg~i~iwd~~~~~--~~~-~~~~~~~-~v~~~~~~~--dg~~~~~~  255 (392)
                      +++.||.|++||..+++  ... ...+|.. .|.+++|+|  ++++++++
T Consensus       266 s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~  315 (330)
T 2hes_X          266 SVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATG  315 (330)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred             EEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence            99999999999998764  232 3356776 899999998  56555553

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.9e-41  Score=300.89  Aligned_cols=293  Identities=12%  Similarity=0.081  Sum_probs=226.8

Q ss_pred             ccceeeeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCcee--EEecccccceEEEEEec-CCCEEEEEeCCCe
Q psy17243         16 HELQSTMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVV--STFKSHQSTILAVAVLS-DSRRVVTSDKAGV   91 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~   91 (392)
                      .+.......|...|++|+|+| ++.+||+|+.||.|+|||+.+++..  ..+.+|.+.|++++|+| ++++|++++.||+
T Consensus       109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            344555667999999999999 5679999999999999999877544  44568999999999998 6889999999999


Q ss_pred             EEEEEcCCceeeeec-----ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCC-
Q psy17243         92 IAVWVADNAQLLYSA-----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQ-  165 (392)
Q Consensus        92 i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  165 (392)
                      |++||++++......     ...+.++.++|++++|++|+.||.|++||++..    .......|...|.+++|+|++. 
T Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~----~~~~~~~h~~~v~~v~~~p~~~~  264 (435)
T 4e54_B          189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK----ELWNLRMHKKKVTHVALNPCCDW  264 (435)
T ss_dssp             EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC----BCCCSBCCSSCEEEEEECTTCSS
T ss_pred             EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc----eeEEEecccceEEeeeecCCCce
Confidence            999999876543221     224578999999999999999999999998632    2233457899999999999875 


Q ss_pred             EEEEeeCCCcEEEEEcCCCeEEEE---EecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccc---
Q psy17243        166 YLITGSRDMSLKVWQVVGGKLAQV---LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGC---  239 (392)
Q Consensus       166 ~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---  239 (392)
                      +|++++.|+.|++||+++.+....   ..+|...|++++|+ +++.+|++++.||.|+|||+.+++....+..|...   
T Consensus       265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~  343 (435)
T 4e54_B          265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS-PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ  343 (435)
T ss_dssp             EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBC-TTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS
T ss_pred             EEEEecCcceeeEEecccccccceEEEeeeccccccceeEC-CCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc
Confidence            788999999999999988764433   35789999999999 68889999999999999999999887777665432   


Q ss_pred             ---eeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccc
Q psy17243        240 ---VTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEI  316 (392)
Q Consensus       240 ---v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~  316 (392)
                         +....|+|++.+++.+                                                             
T Consensus       344 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------------------  362 (435)
T 4e54_B          344 HLTPIKAAWHPRYNLIVVG-------------------------------------------------------------  362 (435)
T ss_dssp             SSCCCBCEECSSSSCEEEE-------------------------------------------------------------
T ss_pred             cceeEEEEEcCCCCEEEEE-------------------------------------------------------------
Confidence               1223333333333221                                                             


Q ss_pred             eecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCcccc-ccccCccCCCCcccc
Q psy17243        317 SKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSR-QHSVDTDELSSPVDE  389 (392)
Q Consensus       317 ~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~-~fspdg~~l~~~~~d  389 (392)
                                   +++++..+++++..++.|++||..++.....+  ...+...+.++ +|||||++||+|+++
T Consensus       363 -------------~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l--~~~~~~~v~s~~~fspdg~~lasg~d~  421 (435)
T 4e54_B          363 -------------RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL--YDPESSGISSLNEFNPMGDTLASAMGY  421 (435)
T ss_dssp             -------------CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE--CCSSCCCCCCEEEECTTSSCEEEECSS
T ss_pred             -------------EcCCCCeEEEEecCCCEEEEEECCCCcEEEEE--eCCCCCcEEEEEEECCCCCEEEEEcCC
Confidence                         45677777767777788999999888763321  11234456664 799999999988754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.7e-40  Score=316.26  Aligned_cols=237  Identities=22%  Similarity=0.351  Sum_probs=205.9

Q ss_pred             ceeeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCC-----ceeEEecccccceEEEEEecCCCEEEEEeCCCe
Q psy17243         18 LQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLG-----SVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGV   91 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   91 (392)
                      ....+++|.+.|++++|+|+ +++|++|+.|++|++|++.+.     .....+.+|...|.+++|+|++++|++++.|+.
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            34568899999999999986 479999999999999998763     345678899999999999999999999999999


Q ss_pred             EEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCC--CE
Q psy17243         92 IAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS--QY  166 (392)
Q Consensus        92 i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~  166 (392)
                      |++||+.+++.+..   +...+.+++|+|++++|++++.|+.|++||...............|...|.+++|+|++  ..
T Consensus       454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  533 (694)
T 3dm0_A          454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT  533 (694)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred             EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence            99999999877654   45678999999999999999999999999985322111111123578889999999986  68


Q ss_pred             EEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEc
Q psy17243        167 LITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLA  246 (392)
Q Consensus       167 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  246 (392)
                      |++++.|+.|++||+++++....+.+|...|++++|+ +++.+|++++.||.|++||+.+++.+..+.. ...|.+++|+
T Consensus       534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s  611 (694)
T 3dm0_A          534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS-PDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFS  611 (694)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEEC
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEc
Confidence            9999999999999999999999999999999999999 6889999999999999999999998887764 5689999999


Q ss_pred             CCCeEEEEcC
Q psy17243        247 GDGTVAMSDL  256 (392)
Q Consensus       247 ~dg~~~~~~~  256 (392)
                      |++.+++.+.
T Consensus       612 p~~~~l~~~~  621 (694)
T 3dm0_A          612 PNRYWLCAAT  621 (694)
T ss_dssp             SSSSEEEEEE
T ss_pred             CCCcEEEEEc
Confidence            9999988764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.3e-40  Score=320.43  Aligned_cols=242  Identities=15%  Similarity=0.269  Sum_probs=217.6

Q ss_pred             cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        17 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      +..+.+.+|.+.|.+++|+|++++|++++.||.|+|||+.+++.+..+..|..+|.+++|+|++++|++++.||.|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc-CCCEEEEeeC
Q psy17243         97 ADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW-DSQYLITGSR  172 (392)
Q Consensus        97 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  172 (392)
                      +.+++.+..   +...+.+++|+|++++|++++.||.|++||+...  .........|...|.+++|+| ++++|++++.
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT--SEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC--ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            999987654   4457899999999999999999999999999743  133344557889999999999 8899999999


Q ss_pred             CCcEEEEEcCCCeEEEEEecCC-CceeEEEEec-CCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCe
Q psy17243        173 DMSLKVWQVVGGKLAQVLVGHT-DHVSCVAVAV-TNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT  250 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~  250 (392)
                      ||.|++||+.+++....+..+. ..+.+++|+| +++.++++++.||.|++||+.+++.+..+.+|...|.+++|+|+|.
T Consensus       162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  241 (814)
T 3mkq_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP  241 (814)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence            9999999999888777776655 8899999995 2788999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCC
Q psy17243        251 VAMSDLPPSR  260 (392)
Q Consensus       251 ~~~~~~~~~~  260 (392)
                      +++++..++.
T Consensus       242 ~l~~~~~dg~  251 (814)
T 3mkq_A          242 IIISGSEDGT  251 (814)
T ss_dssp             EEEEEETTSC
T ss_pred             EEEEEeCCCe
Confidence            8888876544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.2e-39  Score=287.69  Aligned_cols=233  Identities=17%  Similarity=0.162  Sum_probs=209.1

Q ss_pred             eccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc--eeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q psy17243         22 MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADN   99 (392)
Q Consensus        22 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   99 (392)
                      +..|..+|++++|+|++++|++++.|+.|++||+++++  .+..+..|...|.+++|+|++++|++++.|+.|++||+++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            45589999999999999999999999999999999987  8889999999999999999999999999999999999988


Q ss_pred             ceeee-----ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc-ceeeeccccceEEEEEEcCCCEEEEeeCC
Q psy17243        100 AQLLY-----SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD-ERFTVSHSEEITCFTVTWDSQYLITGSRD  173 (392)
Q Consensus       100 ~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  173 (392)
                      ++...     .+...+.+++|+|++++|++++.|+.|++||++....... ......|...|.+++|+|++++|++++.|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            86432     3456889999999999999999999999999985443222 22334678999999999999999999999


Q ss_pred             CcEEEEEc------------------CCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        174 MSLKVWQV------------------VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       174 g~i~i~d~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      +.|++||+                  ..++.+..+..|...|.+++|+ +++.+|++++.|+.|++||+++++.+..+..
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC-CCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence            99999995                  4678888898999999999999 6778999999999999999999999999999


Q ss_pred             cccceeEEEEcCCCeEEEEc
Q psy17243        236 HLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       236 ~~~~v~~~~~~~dg~~~~~~  255 (392)
                      |...|.+++|+|++++++++
T Consensus       243 ~~~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          243 ETLPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             SSCCEEEEEEEETTEEEEEE
T ss_pred             CCCCeEEEEEecCCCEEEEE
Confidence            99999999999999999987

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-39  Score=292.67  Aligned_cols=256  Identities=12%  Similarity=0.133  Sum_probs=211.9

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|++||+.+++....+..| ..+....|+|++++|++++.||.|++||+++++....+..|...|.+++|+|++
T Consensus        73 ~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  151 (420)
T 3vl1_A           73 KARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG  151 (420)
T ss_dssp             EEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTS
T ss_pred             EEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCC
Confidence            4678999999999999888888776 445556789999999999999999999999999999888999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      ++|++++.|+.|++||+.+++.+..   +...+.+++|+|++++|++++.|+.|++||+++............+...+.+
T Consensus       152 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~  231 (420)
T 3vl1_A          152 EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS  231 (420)
T ss_dssp             SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence            9999999999999999998876554   4568899999999999999999999999999855433222221234444444


Q ss_pred             E---------------------EEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe-cCCCceeEEEEecCCCcEEEEecC
Q psy17243        158 F---------------------TVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV-GHTDHVSCVAVAVTNKSLVVSGSK  215 (392)
Q Consensus       158 ~---------------------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~  215 (392)
                      +                     +|+|++++|++++.||.|++||+++++.+..+. .|...|.+++|+|.+..+|++++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~  311 (420)
T 3vl1_A          232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE  311 (420)
T ss_dssp             EEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET
T ss_pred             EEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC
Confidence            4                     456789999999999999999999998777764 478899999999554449999999


Q ss_pred             CCeEEEEECCCCce-eeeecc-cccceeEEEEcCCCeEEEEcCCC
Q psy17243        216 DSNLIVWDMETGGE-EHFLAG-HLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       216 dg~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      ||.|++||+++++. +..+.. |...|.++.+ +++++++++..+
T Consensus       312 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d  355 (420)
T 3vl1_A          312 NGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFD  355 (420)
T ss_dssp             TSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTT
T ss_pred             CCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCC
Confidence            99999999998754 667766 5667877755 577788876533

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.8e-38  Score=269.93  Aligned_cols=236  Identities=16%  Similarity=0.218  Sum_probs=200.0

Q ss_pred             eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC--CceeEEecccccceEEEEEecC--CCEEEEEeCCCeEEEE
Q psy17243         20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL--GSVVSTFKSHQSTILAVAVLSD--SRRVVTSDKAGVIAVW   95 (392)
Q Consensus        20 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iw   95 (392)
                      ..+.+|...|++++|+|++++|++|+.|++|+|||++.  .+.+..+.+|.++|.+++|+++  +++|++++.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45678999999999999999999999999999999974  4678899999999999999863  8899999999999999


Q ss_pred             EcCCce--ee---eecccceeEEEEeCC--CCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC-----
Q psy17243         96 VADNAQ--LL---YSALGPSKCLTVTHN--MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD-----  163 (392)
Q Consensus        96 d~~~~~--~~---~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----  163 (392)
                      |+++++  .+   ..+...+.+++|+|+  +.+|++++.|+.|++||++...... ......|...|.+++|+|+     
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-CEEEECCSSCEEEEEECCCC----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-eeeeecccCccceEeecCCccccc
Confidence            998774  22   234568899999997  8899999999999999997543222 2345578999999999997     


Q ss_pred             --------CCEEEEeeCCCcEEEEEcCCCe----EEEEEecCCCceeEEEEecCC--CcEEEEecCCCeEEEEECCCCc-
Q psy17243        164 --------SQYLITGSRDMSLKVWQVVGGK----LAQVLVGHTDHVSCVAVAVTN--KSLVVSGSKDSNLIVWDMETGG-  228 (392)
Q Consensus       164 --------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-  228 (392)
                              +++|++|+.|+.|++||+++++    ....+.+|...|.+++|+|..  +.+|++++.|++|++||++++. 
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~  241 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG  241 (297)
T ss_dssp             --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred             ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence                    5799999999999999998765    567788999999999999653  5899999999999999998753 


Q ss_pred             --eeeee--cccccceeEEEEcCCCeEEEEcC
Q psy17243        229 --EEHFL--AGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       229 --~~~~~--~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                        ....+  ..|...|.+++|+|+|++++++.
T Consensus       242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~  273 (297)
T 2pm7_B          242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (297)
T ss_dssp             CCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             ccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence              12233  46788999999999999888764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-40  Score=288.47  Aligned_cols=313  Identities=15%  Similarity=0.171  Sum_probs=247.5

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee-
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL-  103 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-  103 (392)
                      |..+|.+++|+|+|++++++..++.+.+|.............|...|.+++|+|++++|++++ ||.|++||+.+++.. 
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            567899999999999999888888777776665555445557999999999999999999999 999999999876432 


Q ss_pred             --e-----ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcE
Q psy17243        104 --Y-----SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSL  176 (392)
Q Consensus       104 --~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  176 (392)
                        .     .+...+.+++|+|+++++++++.|+.|++||+...... .......|...+.+++|+|++++|++++.|+.|
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v  165 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence              2     34568899999999999999999999999999855321 233445688899999999999999999999999


Q ss_pred             EEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ++||+++++.+..+..|...+.+++|+ +++.+|++++.||.|++||+++++.+..+. +...+.+++|+|++++++++.
T Consensus       166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~  243 (337)
T 1gxr_A          166 AVWDLHNQTLVRQFQGHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEeCCCCceeeeeecccCceEEEEEC-CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc
Confidence            999999999999999999999999999 678899999999999999999998887765 778899999999999999875


Q ss_pred             CCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhh
Q psy17243        257 PPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAA  336 (392)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~  336 (392)
                      .++..                   +.|....+..                .....         +.......+|+|++++
T Consensus       244 ~~~~i-------------------~~~~~~~~~~----------------~~~~~---------~~~~v~~~~~~~~~~~  279 (337)
T 1gxr_A          244 ESSNV-------------------EVLHVNKPDK----------------YQLHL---------HESCVLSLKFAYCGKW  279 (337)
T ss_dssp             TTSCE-------------------EEEETTSSCE----------------EEECC---------CSSCEEEEEECTTSSE
T ss_pred             CCCcE-------------------EEEECCCCCe----------------EEEcC---------CccceeEEEECCCCCE
Confidence            43221                   1122111100                00000         0001111268999999


Q ss_pred             hhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCccccc
Q psy17243        337 LAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       337 la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d~  390 (392)
                      |+ +++.|+.|++||+.++...    ....+...+..++|+|||++|++++.|.
T Consensus       280 l~-~~~~dg~i~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          280 FV-STGKDNLLNAWRTPYGASI----FQSKESSSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             EE-EEETTSEEEEEETTTCCEE----EEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             EE-EecCCCcEEEEECCCCeEE----EEecCCCcEEEEEECCCCCEEEEecCCC
Confidence            98 8899999999999887763    2233455677799999999999887763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.2e-38  Score=289.74  Aligned_cols=226  Identities=23%  Similarity=0.407  Sum_probs=197.8

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEe--c
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVL--S   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~--~   78 (392)
                      +|+.||.|++||+.+++.+..+.+|...|.+++|+|++ +|++|+.||+|++||+++++.+..+.+|...|.+++|+  +
T Consensus       137 sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~  215 (464)
T 3v7d_B          137 TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK  215 (464)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESS
T ss_pred             EEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCC
Confidence            57899999999999999999999999999999999988 89999999999999999999999999999999999999  4


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeee-----------------------ccc-ceeEEEEeCCCCEEEEecCCCcEEEE
Q psy17243         79 DSRRVVTSDKAGVIAVWVADNAQLLYS-----------------------ALG-PSKCLTVTHNMKYIVSGDGDNSLRIW  134 (392)
Q Consensus        79 ~~~~l~~~~~d~~i~iwd~~~~~~~~~-----------------------~~~-~~~~~~~~~~~~~l~~~~~d~~i~~~  134 (392)
                      +++++++++.|+.|++||+.++.....                       ..+ .....+++++++++++++.|+.|++|
T Consensus       216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vw  295 (464)
T 3v7d_B          216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW  295 (464)
T ss_dssp             SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred             CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEE
Confidence            778999999999999999987753321                       111 12234457889999999999999999


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEec
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      |+++.   ........|...|.+++|+|++++|++++.||.|++||+++++++..+.+|...|.+++|+   +.+|++++
T Consensus       296 d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s  369 (464)
T 3v7d_B          296 DVAQM---KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS---DKFLVSAA  369 (464)
T ss_dssp             ETTTT---EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC---SSEEEEEE
T ss_pred             ECCCC---cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc---CCEEEEEe
Confidence            99743   3344455789999999999999999999999999999999999999999999999999997   57899999


Q ss_pred             CCCeEEEEECCCCceeeee
Q psy17243        215 KDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       215 ~dg~i~iwd~~~~~~~~~~  233 (392)
                      .||.|++||+.+++.....
T Consensus       370 ~dg~v~vwd~~~~~~~~~~  388 (464)
T 3v7d_B          370 ADGSIRGWDANDYSRKFSY  388 (464)
T ss_dssp             TTSEEEEEETTTCCEEEEE
T ss_pred             CCCcEEEEECCCCceeeee
Confidence            9999999999987654433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.5e-39  Score=286.03  Aligned_cols=249  Identities=14%  Similarity=0.108  Sum_probs=219.6

Q ss_pred             CCccCCeEEEEECCCcc------ceeeeccCCcCeeEEEecCC----C---CeEEEEeCCCeEEEEeCCCCce-----eE
Q psy17243          1 MGGMDCLVNVWQMNSHE------LQSTMEGHLNTVSCVAISPN----S---IFAVSGSEDNTAKVWGLTLGSV-----VS   62 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~~~----~---~~l~~~~~dg~v~iwd~~~~~~-----~~   62 (392)
                      +|+.||.|++||+.+++      ....+.+|...|.+++|+|+    +   ++|++++.||.|++||+.+++.     +.
T Consensus        31 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  110 (397)
T 1sq9_A           31 SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE  110 (397)
T ss_dssp             EEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE
T ss_pred             EEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccce
Confidence            47899999999999887      78888999999999999999    9   9999999999999999998887     88


Q ss_pred             Eeccc-----ccceEEEEEe----cCCCE-EEEEeCCCeEEEEEcCC------ceeee-----ec----------cccee
Q psy17243         63 TFKSH-----QSTILAVAVL----SDSRR-VVTSDKAGVIAVWVADN------AQLLY-----SA----------LGPSK  111 (392)
Q Consensus        63 ~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~iwd~~~------~~~~~-----~~----------~~~~~  111 (392)
                      .+..|     ...|.+++|+    |++++ |++++.||.|++||+.+      ++.+.     .+          ...+.
T Consensus       111 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  190 (397)
T 1sq9_A          111 KLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT  190 (397)
T ss_dssp             EECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCC
T ss_pred             eecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCce
Confidence            88888     5999999999    99999 99999999999999998      55443     33          55788


Q ss_pred             EEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeec---c---ccceEEEEEEcCCCEEEEeeCC---CcEEEEEcC
Q psy17243        112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS---H---SEEITCFTVTWDSQYLITGSRD---MSLKVWQVV  182 (392)
Q Consensus       112 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~  182 (392)
                      +++|+|++ ++++++.|+.|++||++..   ........   |   ...|.+++|+|++++|++++.|   +.|++||++
T Consensus       191 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~  266 (397)
T 1sq9_A          191 SVDISERG-LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE  266 (397)
T ss_dssp             EEEECTTS-EEEEECTTSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEECCCc-eEEEEeCCCcEEEEECCCC---ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            99999999 9999999999999999743   33333444   7   8999999999999999999999   999999999


Q ss_pred             CCeEEEEEec-------------CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec------cc-------
Q psy17243        183 GGKLAQVLVG-------------HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA------GH-------  236 (392)
Q Consensus       183 ~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------  236 (392)
                      +++.+..+..             |...|.+++|+ +++.+|++++.||.|++||+.+++.+..+.      .|       
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g  345 (397)
T 1sq9_A          267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN-DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAV  345 (397)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCB
T ss_pred             CCcccceeccCcccccccccccccCCcEEEEEEC-CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcc
Confidence            9999999998             99999999999 678899999999999999999999999998      77       


Q ss_pred             --------ccceeEEEEcCCCeEEEE
Q psy17243        237 --------LGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       237 --------~~~v~~~~~~~dg~~~~~  254 (392)
                              ...|.+++|+|+|+.++.
T Consensus       346 ~~~~~~~~~~~v~~~~~~~~g~~~~~  371 (397)
T 1sq9_A          346 DEHGDSLAEPGVFDVKFLKKGWRSGM  371 (397)
T ss_dssp             CTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred             ccccccccCCceeEEEeccccccccc
Confidence                    889999999999865444

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.4e-39  Score=280.75  Aligned_cols=242  Identities=20%  Similarity=0.275  Sum_probs=203.7

Q ss_pred             EEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCcee---EEec--ccccceEEEEEecCCCEEE
Q psy17243         10 VWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV---STFK--SHQSTILAVAVLSDSRRVV   84 (392)
Q Consensus        10 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~   84 (392)
                      +|............+|...|++++|+|++++|++++ ||.|++||+++++..   ..+.  .|...|.+++|+|++++|+
T Consensus        35 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  113 (337)
T 1gxr_A           35 GPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI  113 (337)
T ss_dssp             STTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEE
T ss_pred             ccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEE
Confidence            333333333334457999999999999999999998 999999999877533   3333  6889999999999999999


Q ss_pred             EEeCCCeEEEEEcCCce--eee---ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEE
Q psy17243         85 TSDKAGVIAVWVADNAQ--LLY---SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFT  159 (392)
Q Consensus        85 ~~~~d~~i~iwd~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~  159 (392)
                      +++.|+.|++||+.+++  ...   .+...+.+++++|+++++++++.|+.|++||+++.   ........|...+.+++
T Consensus       114 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~---~~~~~~~~~~~~i~~~~  190 (337)
T 1gxr_A          114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCID  190 (337)
T ss_dssp             EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEE
T ss_pred             EEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---ceeeeeecccCceEEEE
Confidence            99999999999999876  322   34457889999999999999999999999999743   33344456889999999


Q ss_pred             EEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccc
Q psy17243        160 VTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGC  239 (392)
Q Consensus       160 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (392)
                      |+|++++|++++.|+.|++||+++++.+..+. +...+.+++|+ +++.++++++.|+.|++||+++++. ..+..|...
T Consensus       191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s-~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~  267 (337)
T 1gxr_A          191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESC  267 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSC
T ss_pred             ECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccc
Confidence            99999999999999999999999999888775 78899999999 6788999999999999999998775 467789999


Q ss_pred             eeEEEEcCCCeEEEEcCCC
Q psy17243        240 VTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       240 v~~~~~~~dg~~~~~~~~~  258 (392)
                      |.+++|+|++++++++..+
T Consensus       268 v~~~~~~~~~~~l~~~~~d  286 (337)
T 1gxr_A          268 VLSLKFAYCGKWFVSTGKD  286 (337)
T ss_dssp             EEEEEECTTSSEEEEEETT
T ss_pred             eeEEEECCCCCEEEEecCC
Confidence            9999999999999987543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-39  Score=290.30  Aligned_cols=299  Identities=11%  Similarity=0.076  Sum_probs=220.5

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-ccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~   79 (392)
                      ||+.|++|+  |.   +..+.+++|...|.+++|+|+|       .++.+.+|+   ++....+. .|...|.+++|+|+
T Consensus        32 Sas~D~TV~--d~---~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~~~~~~~~~~~V~~vawSPd   96 (588)
T 2j04_A           32 TTFPDISIG--QP---KYAKDINCNSKNLFHVKEFPLE-------FENKLDFEL---AQQNGLLNSQPVCYPRVCKPSPI   96 (588)
T ss_dssp             ECSSSEEEE--EE---CCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSC---CCSSCSSTTSCSCCEEEEEECSS
T ss_pred             EEcCCceee--cc---cccceecCCCccEEEEEECCCC-------CcceEEEEe---CCCceEeecCCCCcEEEEEECCC
Confidence            356677776  43   3333445677777777777766       344444443   33222222 35788999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeeccc-----ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc----ceee--
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYSALG-----PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD----ERFT--  148 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~--  148 (392)
                      |+.|++++.||.|++||.++.-....+..     .+.+++|+|+|++|++|+.||.|++||+..+.....    ....  
T Consensus        97 G~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~  176 (588)
T 2j04_A           97 DDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL  176 (588)
T ss_dssp             SSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC
T ss_pred             CCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec
Confidence            99999999999999999654211112222     388999999999999999999999999986532111    2222  


Q ss_pred             --eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE---EEEE-ecCCCceeEEEEecCCCcEEEEecCCCeEEEE
Q psy17243        149 --VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL---AQVL-VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVW  222 (392)
Q Consensus       149 --~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  222 (392)
                        .+|...|.+++|+|++  +++++.|+.|++||+.+++.   .+.+ .+|...|.+++|+   +..|++++ ++.|++|
T Consensus       177 ~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLW  250 (588)
T 2j04_A          177 SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKI  250 (588)
T ss_dssp             SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEE
T ss_pred             ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEE
Confidence              4577899999999999  88888999999999988763   3556 4788999999998   47888887 6999999


Q ss_pred             ECCCCceeeeecccccceeEEEE--cCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecc
Q psy17243        223 DMETGGEEHFLAGHLGCVTCVKL--AGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVD  300 (392)
Q Consensus       223 d~~~~~~~~~~~~~~~~v~~~~~--~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (392)
                      |+.+++......+|...|..++|  +||++.++++.                                            
T Consensus       251 d~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~--------------------------------------------  286 (588)
T 2j04_A          251 DLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN--------------------------------------------  286 (588)
T ss_dssp             ETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS--------------------------------------------
T ss_pred             ECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc--------------------------------------------
Confidence            99988774444479999999999  99998888753                                            


Q ss_pred             cccceeEEEeeccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCc
Q psy17243        301 ERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDT  380 (392)
Q Consensus       301 ~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg  380 (392)
                                  .+++ ++|...   ..+|+||+..+| +  .|+.+++|+...+..     ..+.....+.+++|||||
T Consensus       287 ------------edG~-klw~~d---~~~~spd~~l~a-~--~d~~v~lW~~~g~~l-----~~~~~~~~I~~va~SPdG  342 (588)
T 2j04_A          287 ------------KTSY-KVLLED---ELHVTADNIIAP-Y--LEKKFKKWSTIWNEF-----NNYETTLVIHGISLSPDG  342 (588)
T ss_dssp             ------------SCEE-EEEESS---SEEEECCCSSHH-H--HHHHHHHTTTTTTSS-----SSSCCEEEEEEEEECTTS
T ss_pred             ------------CCCC-EEEeec---cEEECCCceEEE-E--cCCEEEEEECCCCce-----eeeccceEEEEEEECCCC
Confidence                        3455 556544   245889999988 5  399999999865543     223333346679999999


Q ss_pred             cCCCCccc
Q psy17243        381 DELSSPVD  388 (392)
Q Consensus       381 ~~l~~~~~  388 (392)
                      +.||+++.
T Consensus       343 ~~lA~~~~  350 (588)
T 2j04_A          343 YSIAIVYD  350 (588)
T ss_dssp             SEEEEEEE
T ss_pred             CEEEEEEe
Confidence            99997654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=267.98  Aligned_cols=307  Identities=15%  Similarity=0.171  Sum_probs=241.3

Q ss_pred             ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEc
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA   97 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   97 (392)
                      ....+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            34558899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeee--cccceeEEEEeCCCCEEEEecCC-----CcEEEEeCCCCCCCCc--------ceeeecccc--ceEEEEE
Q psy17243         98 DNAQLLYS--ALGPSKCLTVTHNMKYIVSGDGD-----NSLRIWPTSPQTHKDD--------ERFTVSHSE--EITCFTV  160 (392)
Q Consensus        98 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~--------~~~~~~~~~--~v~~~~~  160 (392)
                      .+++.+..  ...++.++.|+|+++++++++.+     +.|++||+........        ......+..  .+.+++|
T Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            99887654  45678999999999999999999     9999999976543222        122223444  8999999


Q ss_pred             EcCCCEEEEeeCCCcEEEEEcCC-CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccc
Q psy17243        161 TWDSQYLITGSRDMSLKVWQVVG-GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGC  239 (392)
Q Consensus       161 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (392)
                      +|++++|++++.||.|++||+++ .+.+..+..|...|.+++|+ +++.+|++++.|+.|++||+++++.+..+. +...
T Consensus       184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~  261 (369)
T 3zwl_B          184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCP  261 (369)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECCCCceeeeec-CCCC
Confidence            99999999999999999999998 78889999999999999999 678899999999999999999999888887 7789


Q ss_pred             eeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceec
Q psy17243        240 VTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKI  319 (392)
Q Consensus       240 v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~  319 (392)
                      +..++|+|++++++.+..+......     .............|....+.....               +.+        
T Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~i~~~d~~~~~~~~~---------------~~~--------  313 (369)
T 3zwl_B          262 LNTAVITPLKEFIILGGGQEAKDVT-----TTSANEGKFEARFYHKIFEEEIGR---------------VQG--------  313 (369)
T ss_dssp             EEEEEECSSSSEEEEEECCC------------------CEEEEEETTTCCEEEE---------------EEC--------
T ss_pred             ceeEEecCCCceEEEeecCCCceEE-----EEecCCCcceeEEEecCCCcchhh---------------eec--------
Confidence            9999999999999987644321111     010111111222232222111000               000        


Q ss_pred             ceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCC
Q psy17243        320 PIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPP  356 (392)
Q Consensus       320 ~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~  356 (392)
                       +.......+|+|++++|+ +++.||.|++|++.++.
T Consensus       314 -~~~~v~~~~~s~~~~~l~-s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          314 -HFGPLNTVAISPQGTSYA-SGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             -CSSCEEEEEECTTSSEEE-EEETTSEEEEEEECHHH
T ss_pred             -ccCcEEEEEECCCCCEEE-EEcCCCeEEEEECcccc
Confidence             001111126899999988 88999999999987654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-39  Score=285.10  Aligned_cols=236  Identities=11%  Similarity=0.035  Sum_probs=199.4

Q ss_pred             eeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC--ceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcC
Q psy17243         21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--SVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD   98 (392)
Q Consensus        21 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   98 (392)
                      .++.|..+|++++|+|++++|++++.|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34447789999999999999999999999999999988  7888899999999999999999999999999999999999


Q ss_pred             Cce---ee---eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeec-cccceEEEEEEcCCCEEEEee
Q psy17243         99 NAQ---LL---YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS-HSEEITCFTVTWDSQYLITGS  171 (392)
Q Consensus        99 ~~~---~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  171 (392)
                      +++   ..   ..+...+.+++|+|++++|++++.|+.|++||++............. |...|.+++|+|++++|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence            876   22   34566889999999999999999999999999986553333444445 899999999999999999999


Q ss_pred             CCCcEEEEEcC------------------CCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce----
Q psy17243        172 RDMSLKVWQVV------------------GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE----  229 (392)
Q Consensus       172 ~dg~i~i~d~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----  229 (392)
                      .|+.|++||++                  .++++..+ +|...|++++|+ +++.+|++++.||.|++||+.+++.    
T Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~  243 (377)
T 3dwl_C          166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS-PSGNALAYAGHDSSVTIAYPSAPEQPPRA  243 (377)
T ss_dssp             SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC-TTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred             CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence            99999999985                  34566666 899999999999 6788999999999999999999987    


Q ss_pred             eeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        230 EHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       230 ~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      +..+.+|...|.+++|+|+|++++++..+
T Consensus       244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  272 (377)
T 3dwl_C          244 LITVKLSQLPLRSLLWANESAIVAAGYNY  272 (377)
T ss_dssp             CCCEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred             eEeecCCCCceEEEEEcCCCCEEEEEcCC
Confidence            78889999999999999999999998654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.3e-39  Score=284.89  Aligned_cols=237  Identities=16%  Similarity=0.144  Sum_probs=205.8

Q ss_pred             ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc------eeEEecccccceEEEEEecC----C---CEEE
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS------VVSTFKSHQSTILAVAVLSD----S---RRVV   84 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~l~   84 (392)
                      ....+.+|...|++++|+|  ++|++++.||.|++||+++++      .+..+..|...|.+++|+|+    +   ++|+
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            4556789999999999999  799999999999999999988      78888899999999999999    9   9999


Q ss_pred             EEeCCCeEEEEEcCCcee-----eee---c-----ccceeEEEEe----CCCCE-EEEecCCCcEEEEeCCC------CC
Q psy17243         85 TSDKAGVIAVWVADNAQL-----LYS---A-----LGPSKCLTVT----HNMKY-IVSGDGDNSLRIWPTSP------QT  140 (392)
Q Consensus        85 ~~~~d~~i~iwd~~~~~~-----~~~---~-----~~~~~~~~~~----~~~~~-l~~~~~d~~i~~~d~~~------~~  140 (392)
                      +++.|+.|++||+.+++.     +..   +     ...+.+++|+    |++++ |++++.|+.|++||+..      ..
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            999999999999988764     433   3     3678999999    99999 99999999999999985      32


Q ss_pred             CCCcc--eee-------eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec---C---CCceeEEEEecC
Q psy17243        141 HKDDE--RFT-------VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG---H---TDHVSCVAVAVT  205 (392)
Q Consensus       141 ~~~~~--~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~v~~~~~~~~  205 (392)
                      .....  ...       ..|...+.+++|+|++ +|++++.|+.|++||+++++.+..+..   |   ...|.+++|+ +
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~-~  243 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-P  243 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-S
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC-C
Confidence            22200  022       3478899999999999 999999999999999999999999998   8   9999999999 6


Q ss_pred             CCcEEEEecCC---CeEEEEECCCCceeeeecc-------------cccceeEEEEcCCCeEEEEcCCC
Q psy17243        206 NKSLVVSGSKD---SNLIVWDMETGGEEHFLAG-------------HLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       206 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      ++.+|++++.|   +.|++||+++++.+..+..             |...|.+++|+|++++++++..+
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  312 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  312 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence            78899999999   9999999999999999988             99999999999999999997644

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-39  Score=293.88  Aligned_cols=238  Identities=17%  Similarity=0.246  Sum_probs=199.4

Q ss_pred             EEECCCccceeee-ccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCC---Cc---eeEEecccccceEEEEEecCCC
Q psy17243         10 VWQMNSHELQSTM-EGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTL---GS---VVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus        10 vwd~~~~~~~~~~-~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      .|+ .+++++..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+   +.   ....+ .|...|.+++|+|+++
T Consensus        47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~  124 (437)
T 3gre_A           47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD  124 (437)
T ss_dssp             GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred             ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence            466 457788888 88999999999999 999999999999999999876   43   23333 4899999999999999


Q ss_pred             EEEEEeCCCeEEEEEcC---Cceeeeec---------------ccceeEEE--EeCCCCEEEEecCCCcEEEEeCCCCCC
Q psy17243         82 RVVTSDKAGVIAVWVAD---NAQLLYSA---------------LGPSKCLT--VTHNMKYIVSGDGDNSLRIWPTSPQTH  141 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~---~~~~~~~~---------------~~~~~~~~--~~~~~~~l~~~~~d~~i~~~d~~~~~~  141 (392)
                      +|++++.||.|++||++   +++.+...               ...+.++.  +++++.++++++.|+.|++||++... 
T Consensus       125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-  203 (437)
T 3gre_A          125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-  203 (437)
T ss_dssp             EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-
T ss_pred             EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-
Confidence            99999999999999995   44333221               12334444  55789999999999999999997533 


Q ss_pred             CCcceeeec--cccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe-cCCCceeEEEEec---CCCcEEEEecC
Q psy17243        142 KDDERFTVS--HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV-GHTDHVSCVAVAV---TNKSLVVSGSK  215 (392)
Q Consensus       142 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~---~~~~~l~~~~~  215 (392)
                        .......  |...|++++|+|++++|++++.||.|++||+++++++..+. .|...|++++|+|   +++.+|++++.
T Consensus       204 --~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~  281 (437)
T 3gre_A          204 --RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS  281 (437)
T ss_dssp             --EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred             --eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC
Confidence              2333334  78999999999999999999999999999999999999886 7888999998875   46779999999


Q ss_pred             CCeEEEEECCCCceeeeecccccceeEEEEcCCCeEE
Q psy17243        216 DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVA  252 (392)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~  252 (392)
                      ||.|++||+++++.+..+.+|...+..+.|+|+++.+
T Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  318 (437)
T 3gre_A          282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL  318 (437)
T ss_dssp             TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG
T ss_pred             CCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc
Confidence            9999999999999999999999988888888887554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.8e-38  Score=282.46  Aligned_cols=241  Identities=26%  Similarity=0.487  Sum_probs=213.5

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|++||+.+++.+..+.+|...|.+++|+  +++|++|+.||.|++||+++++.+..+.+|...|.++.|+  +
T Consensus       134 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~  209 (445)
T 2ovr_B          134 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--E  209 (445)
T ss_dssp             EEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T
T ss_pred             EEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--C
Confidence            47899999999999999999999999999999998  5589999999999999999999999999999999999996  5


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      +.+++++.||.|++||+.+++.+..+   ...+.++.+  +++++++++.|+.|++||+++.   ........|...|.+
T Consensus       210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~  284 (445)
T 2ovr_B          210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE---TCLHTLQGHTNRVYS  284 (445)
T ss_dssp             TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT---EEEEEECCCSSCEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC---cEeEEecCCCCceEE
Confidence            68999999999999999998876554   456777777  7889999999999999999743   334444578899999


Q ss_pred             EEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc--
Q psy17243        158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG--  235 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--  235 (392)
                      ++|  +++++++++.|+.|++||+++++.+..+.+|...+.++.++   +.++++++.||.|++||+++++.+..+..  
T Consensus       285 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  359 (445)
T 2ovr_B          285 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPN  359 (445)
T ss_dssp             EEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECSTT
T ss_pred             EEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEccCC
Confidence            998  78899999999999999999999999999999999998876   56899999999999999999999988876  


Q ss_pred             -cccceeEEEEcCCCeEEEEcCC
Q psy17243        236 -HLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       236 -~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                       |...|.+++|+  +.+++++..
T Consensus       360 ~~~~~v~~~~~~--~~~l~s~~~  380 (445)
T 2ovr_B          360 KHQSAVTCLQFN--KNFVITSSD  380 (445)
T ss_dssp             SCSSCEEEEEEC--SSEEEEEET
T ss_pred             CCCCCEEEEEEC--CCEEEEEeC
Confidence             78899999996  456666543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-37  Score=294.82  Aligned_cols=230  Identities=21%  Similarity=0.376  Sum_probs=199.3

Q ss_pred             CCccCCeEEEEECCCc-----cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEE
Q psy17243          1 MGGMDCLVNVWQMNSH-----ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVA   75 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~   75 (392)
                      ||+.|++|++|++.+.     .....+.+|...|.+++|+|++++|++|+.||+|+|||+.+++.+..+.+|...|.+++
T Consensus       400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~  479 (694)
T 3dm0_A          400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVA  479 (694)
T ss_dssp             EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEE
Confidence            5889999999999753     34567889999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCceeee------ecccceeEEEEeCCC--CEEEEecCCCcEEEEeCCCCCCCCccee
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQLLY------SALGPSKCLTVTHNM--KYIVSGDGDNSLRIWPTSPQTHKDDERF  147 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~  147 (392)
                      |+|++++|++++.|+.|++||........      .+...+.+++|+|++  ..+++++.|+.|++||++..   .....
T Consensus       480 ~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---~~~~~  556 (694)
T 3dm0_A          480 FSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---KLRST  556 (694)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---CEEEE
T ss_pred             EeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---cEEEE
Confidence            99999999999999999999987654332      234468999999986  68999999999999999743   33445


Q ss_pred             eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        148 TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      ...|...|++++|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+ +++.++++++ ++.|++||++++
T Consensus       557 ~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s-p~~~~l~~~~-~~~i~iwd~~~~  633 (694)
T 3dm0_A          557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFS-PNRYWLCAAT-EHGIKIWDLESK  633 (694)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEEC-SSSSEEEEEE-TTEEEEEETTTT
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEc-CCCcEEEEEc-CCCEEEEECCCC
Confidence            56799999999999999999999999999999999999888776 45689999999 5677776665 667999999999


Q ss_pred             ceeeeeccc
Q psy17243        228 GEEHFLAGH  236 (392)
Q Consensus       228 ~~~~~~~~~  236 (392)
                      +.+..+..+
T Consensus       634 ~~~~~~~~~  642 (694)
T 3dm0_A          634 SIVEDLKVD  642 (694)
T ss_dssp             EEEEEECCC
T ss_pred             CChhhhccc
Confidence            888776543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-37  Score=279.55  Aligned_cols=252  Identities=17%  Similarity=0.252  Sum_probs=216.5

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|++||+.+++....+.+|...|++++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++
T Consensus       114 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  193 (420)
T 3vl1_A          114 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG  193 (420)
T ss_dssp             EEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT
T ss_pred             EEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC
Confidence            46889999999999999988889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeecc---------------------------cceeEEEEeCCCCEEEEecCCCcEEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSAL---------------------------GPSKCLTVTHNMKYIVSGDGDNSLRI  133 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~d~~i~~  133 (392)
                      ++|++++.|+.|++||+++++.+..+.                           .++.+++|+|++++|++++.||.|++
T Consensus       194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  273 (420)
T 3vl1_A          194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITV  273 (420)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEE
T ss_pred             CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEE
Confidence            999999999999999999998776554                           23445667899999999999999999


Q ss_pred             EeCCCCCCCCcceeeeccccceEEEEEEcCCC-EEEEeeCCCcEEEEEcCCCe-EEEEEec-CCCceeEEEEecCCCcEE
Q psy17243        134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQ-YLITGSRDMSLKVWQVVGGK-LAQVLVG-HTDHVSCVAVAVTNKSLV  210 (392)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~l  210 (392)
                      ||++....  .......|...|.+++|+|++. +|++++.||.|++||+++++ ++..+.. |...+.++.+.  ++.+|
T Consensus       274 ~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l  349 (420)
T 3vl1_A          274 HNVFSKEQ--TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALF  349 (420)
T ss_dssp             EETTTCCE--EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEE
T ss_pred             EECCCCce--eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEE
Confidence            99975432  2233345788999999999998 99999999999999999875 4677766 66778888664  56799


Q ss_pred             EEecCCCeEEEEECCCCc---------eeeeecccccceeEEEEcCCCe----EEEEcC
Q psy17243        211 VSGSKDSNLIVWDMETGG---------EEHFLAGHLGCVTCVKLAGDGT----VAMSDL  256 (392)
Q Consensus       211 ~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~dg~----~~~~~~  256 (392)
                      ++++.|+.|++|++..+.         ....+..|...|.+++|+|+++    +++.+.
T Consensus       350 ~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~  408 (420)
T 3vl1_A          350 VSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK  408 (420)
T ss_dssp             EEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred             EEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence            999999999999988742         2234567888999999999998    666653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.9e-38  Score=285.58  Aligned_cols=316  Identities=22%  Similarity=0.350  Sum_probs=242.1

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      .+....+.+|.+.|.. ++.+++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+  ++.+++++.||.|++|
T Consensus       108 ~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw  184 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW  184 (445)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             cceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence            3456678899987633 345568899999999999999999999999999999999999997  5699999999999999


Q ss_pred             EcCCceeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243         96 VADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus        96 d~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      |+.+++.+..+.   ..+.++.++  ++.+++++.|+.|++||+.+.   ........|...+.++++  +++++++++.
T Consensus       185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~--~~~~l~~~~~  257 (445)
T 2ovr_B          185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG---QCLHVLMGHVAAVRCVQY--DGRRVVSGAY  257 (445)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC---CEEEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred             ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC---cEEEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence            999998876554   467777775  678999999999999999743   334445578999999998  7889999999


Q ss_pred             CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEE
Q psy17243        173 DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVA  252 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~  252 (392)
                      ||.|++||+++++++..+.+|...|.++.|   ++.++++++.|+.|++||+++++.+..+.+|...+.++.++  +.++
T Consensus       258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l  332 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNIL  332 (445)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEE
T ss_pred             CCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEE
Confidence            999999999999999999999999999998   47889999999999999999999999999999999988875  4466


Q ss_pred             EEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCC-CCC
Q psy17243        253 MSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQ-GLG  331 (392)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~-~~s  331 (392)
                      +++..++..                   ..|....+.....               +.+...         ..+.+ .+.
T Consensus       333 ~~~~~dg~i-------------------~vwd~~~~~~~~~---------------~~~~~~---------~~~~v~~~~  369 (445)
T 2ovr_B          333 VSGNADSTV-------------------KIWDIKTGQCLQT---------------LQGPNK---------HQSAVTCLQ  369 (445)
T ss_dssp             EEEETTSCE-------------------EEEETTTCCEEEE---------------ECSTTS---------CSSCEEEEE
T ss_pred             EEEeCCCeE-------------------EEEECCCCcEEEE---------------EccCCC---------CCCCEEEEE
Confidence            665433221                   1121111110000               000000         00000 122


Q ss_pred             hhhhhhhcccChHHHHHHhhCCCCCCccccc--cccccccCccccccccCccCCCCccccc
Q psy17243        332 PEQAALAQSQHFDQLEALWNKKSPPRSRRFE--HSMSKQNSYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       332 ~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~--~~~~~~~~~~~~~fspdg~~l~~~~~d~  390 (392)
                      .++.+|+ +++.||.|++||+.+++....+.  ........+.+++|+|+|.+||+|+.|.
T Consensus       370 ~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          370 FNKNFVI-TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             ECSSEEE-EEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             ECCCEEE-EEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence            3456777 88999999999999887644331  1123445577799999999999888775

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-38  Score=286.11  Aligned_cols=246  Identities=14%  Similarity=0.071  Sum_probs=196.2

Q ss_pred             CCccCCeEEEEECCCccce----eeeccCCcCeeEEEecCC------CCeEEEEeCCCeEEEEeCCCCce----------
Q psy17243          1 MGGMDCLVNVWQMNSHELQ----STMEGHLNTVSCVAISPN------SIFAVSGSEDNTAKVWGLTLGSV----------   60 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~----~~~~~h~~~v~~~~~~~~------~~~l~~~~~dg~v~iwd~~~~~~----------   60 (392)
                      +|+.|++|+|||+.+++..    ..+..|.+.|.+++|+|+      +.+||+++.||+|++||+.+++.          
T Consensus       178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~  257 (524)
T 2j04_B          178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK  257 (524)
T ss_dssp             ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred             cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence            4788999999999877643    346678899999999996      57999999999999999987642          


Q ss_pred             -eEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee----eeecccceeEE--EEeCCC-CEEEEecCCCcEE
Q psy17243         61 -VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL----LYSALGPSKCL--TVTHNM-KYIVSGDGDNSLR  132 (392)
Q Consensus        61 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~--~~~~~~-~~l~~~~~d~~i~  132 (392)
                       ...+.+|...|.+++|+++ ..|++|+.||+|++||++++..    +..+...+.++  .+++++ .+|++++.|++|+
T Consensus       258 p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk  336 (524)
T 2j04_B          258 PSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY  336 (524)
T ss_dssp             CSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred             ceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence             2467789999999999986 4899999999999999987632    34456788888  567887 8999999999999


Q ss_pred             EEeCCCCCCCCcceeeeccc--cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEE
Q psy17243        133 IWPTSPQTHKDDERFTVSHS--EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLV  210 (392)
Q Consensus       133 ~~d~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  210 (392)
                      +||++....   ......|.  ..|.+++|+|+++.+++++.|++|++||++++.++..+.+|...|++++|+ +++.+|
T Consensus       337 lWD~~~~~~---~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S-p~g~~l  412 (524)
T 2j04_B          337 IFNPKDIAT---TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVS-RLHPMV  412 (524)
T ss_dssp             EECGGGHHH---HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECC-SSCCBC
T ss_pred             EEECCCCCc---ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeC-CCCCeE
Confidence            999974322   22222333  347899999999999999999999999999999888899999999999999 678889


Q ss_pred             EEecCCCeEEEEECCCCceeeeecc-----cccceeEEEEcCCCeEE
Q psy17243        211 VSGSKDSNLIVWDMETGGEEHFLAG-----HLGCVTCVKLAGDGTVA  252 (392)
Q Consensus       211 ~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~dg~~~  252 (392)
                      ++|+.||+|++||+..+ .+.....     +...+.+++|+|+|..+
T Consensus       413 ~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~  458 (524)
T 2j04_B          413 LAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY  458 (524)
T ss_dssp             EEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE
T ss_pred             EEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE
Confidence            99999999999998653 2222211     11257799999999854

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-36  Score=267.59  Aligned_cols=253  Identities=19%  Similarity=0.254  Sum_probs=227.1

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+. +...|.+++|+|++
T Consensus        49 ~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  127 (369)
T 3zwl_B           49 SCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCG  127 (369)
T ss_dssp             EEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS
T ss_pred             EEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCC
Confidence            46789999999999999999999999999999999999999999999999999999999999888 88999999999999


Q ss_pred             CEEEEEeCC-----CeEEEEEcCCceee--------------eeccc--ceeEEEEeCCCCEEEEecCCCcEEEEeCCCC
Q psy17243         81 RRVVTSDKA-----GVIAVWVADNAQLL--------------YSALG--PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ  139 (392)
Q Consensus        81 ~~l~~~~~d-----~~i~iwd~~~~~~~--------------~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  139 (392)
                      +++++++.+     +.|++||+......              ..+..  .+.+++|+|+++++++++.||.|++||++..
T Consensus       128 ~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  207 (369)
T 3zwl_B          128 NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN  207 (369)
T ss_dssp             SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT
T ss_pred             CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            999999999     99999998765321              11222  7889999999999999999999999999742


Q ss_pred             CCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC--
Q psy17243        140 THKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS--  217 (392)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--  217 (392)
                        .........|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +...+.+++|+ +++.++++++.++  
T Consensus       208 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~~l~~~~~~~~~  283 (369)
T 3zwl_B          208 --YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVIT-PLKEFIILGGGQEAK  283 (369)
T ss_dssp             --TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC-SSSSEEEEEECCC--
T ss_pred             --cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEec-CCCceEEEeecCCCc
Confidence              23344455788999999999999999999999999999999999988887 78899999999 6778888888887  


Q ss_pred             ------------eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        218 ------------NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       218 ------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                                  .+++||+.+++.+..+.+|...|.+++|+|++++++++..+
T Consensus       284 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  336 (369)
T 3zwl_B          284 DVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED  336 (369)
T ss_dssp             -----------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence                        89999999999999999999999999999999999998644

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.4e-38  Score=270.51  Aligned_cols=237  Identities=14%  Similarity=0.198  Sum_probs=193.9

Q ss_pred             eeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc--eeEEecccccceEEEEEec--CCCEEEEEeCCCeEEEEE
Q psy17243         21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAVAVLS--DSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        21 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd   96 (392)
                      .+.+|.+.|++++|+|++++|++|+.|++|+|||+++++  .+..+.+|...|.+++|++  ++++|++++.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456899999999999999999999999999999998875  4678899999999999975  488999999999999999


Q ss_pred             cCCce--eee---ecccceeEEEEeCC--CCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcC------
Q psy17243         97 ADNAQ--LLY---SALGPSKCLTVTHN--MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD------  163 (392)
Q Consensus        97 ~~~~~--~~~---~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~------  163 (392)
                      +++++  .+.   .+...+.+++|+|+  +.+|++++.|+.|++||++.............|...+.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            98863  333   35567899999997  789999999999999999754222112334468889999999987      


Q ss_pred             -----------CCEEEEeeCCCcEEEEEcCCC---eEEEEEecCCCceeEEEEecCC---CcEEEEecCCCeEEEEECCC
Q psy17243        164 -----------SQYLITGSRDMSLKVWQVVGG---KLAQVLVGHTDHVSCVAVAVTN---KSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       164 -----------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~  226 (392)
                                 +++|++++.|+.|++||++..   +++..+.+|...|.+++|+|..   +.+|++++.|++|++|++.+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                       468999999999999999765   4677788999999999999643   37899999999999999986


Q ss_pred             Cc----eeeeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        227 GG----EEHFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       227 ~~----~~~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      ..    ....+..|...|.+++|+|+|++++++..
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~  282 (316)
T 3bg1_A          248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG  282 (316)
T ss_dssp             TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred             ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence            31    22345678889999999999998888653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.5e-36  Score=269.77  Aligned_cols=251  Identities=19%  Similarity=0.300  Sum_probs=213.7

Q ss_pred             ccCCeEEEEECCCccceeeec--cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          3 GMDCLVNVWQMNSHELQSTME--GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +.|++|+|||..+++....+.  +|...|++++|+|+|++|++|+.||.|+|||+++++.+..+.+|...+.++.++  +
T Consensus       122 gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~  199 (420)
T 4gga_A          122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--S  199 (420)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T
T ss_pred             EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--C
Confidence            468999999999999887664  678889999999999999999999999999999999999999999999998875  6


Q ss_pred             CEEEEEeCCCeEEEEEcCCcee----eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCC-Ccceeeeccccce
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQL----LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHK-DDERFTVSHSEEI  155 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~v  155 (392)
                      ..|++++.|+.+++||......    +..+...+..+.++|+++++++++.|+.+++|+....... ........|...|
T Consensus       200 ~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V  279 (420)
T 4gga_A          200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV  279 (420)
T ss_dssp             TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCE
T ss_pred             CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCce
Confidence            7999999999999999886543    2345567889999999999999999999999999865543 2344555788999


Q ss_pred             EEEEEEcCC-CEEEE--eeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEE-ecCCCeEEEEECCCCceee
Q psy17243        156 TCFTVTWDS-QYLIT--GSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS-GSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       156 ~~~~~~~~~-~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~  231 (392)
                      .+++|+|++ .++++  |+.|++|++||+.++++...+..| ..+.++.|+|....++++ |+.|+.|+|||+.+++++.
T Consensus       280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~  358 (420)
T 4gga_A          280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA  358 (420)
T ss_dssp             EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred             eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE
Confidence            999999975 45554  457999999999999999888754 578889999555544443 3479999999999999999


Q ss_pred             eecccccceeEEEEcCCCeEEEEcC
Q psy17243        232 FLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .+.+|.+.|++++|+|||++++++.
T Consensus       359 ~l~gH~~~V~~l~~spdg~~l~S~s  383 (420)
T 4gga_A          359 ELKGHTSRVLSLTMSPDGATVASAA  383 (420)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            9999999999999999998877753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-37  Score=264.48  Aligned_cols=228  Identities=23%  Similarity=0.288  Sum_probs=199.0

Q ss_pred             CccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEE
Q psy17243         15 SHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAV   94 (392)
Q Consensus        15 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   94 (392)
                      ..+....+.+|.+.|++++| |++++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.|+.+++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            34677889999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCce---e---eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc-CCCEE
Q psy17243         95 WVADNAQ---L---LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW-DSQYL  167 (392)
Q Consensus        95 wd~~~~~---~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l  167 (392)
                      |++....   .   +..+...+.++.+  +++++++++.|+.|++||.     .........|...+.++++.| +++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE-----GSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET-----TEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC-----CcEEEecccCCCceeEEEEccCCCCEE
Confidence            9987652   2   2334567788888  6779999999999999992     223344457889999999998 89999


Q ss_pred             EEeeCCCcEEEEEcCCCeEEEEEec-CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEc
Q psy17243        168 ITGSRDMSLKVWQVVGGKLAQVLVG-HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLA  246 (392)
Q Consensus       168 ~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  246 (392)
                      ++++.|+.|++||  ..+....+.. |...+.+++|+ +++. +++++.||.|++||+++++.+..+..|...|.+++|+
T Consensus       159 ~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  234 (313)
T 3odt_A          159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVV-DDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL  234 (313)
T ss_dssp             EEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEE-ETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEc-CCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe
Confidence            9999999999999  5567777776 89999999999 4555 8899999999999999999999999999999999999


Q ss_pred             CCCeEEEE
Q psy17243        247 GDGTVAMS  254 (392)
Q Consensus       247 ~dg~~~~~  254 (392)
                      |++.+++.
T Consensus       235 ~~~~l~~~  242 (313)
T 3odt_A          235 PNGDIVSC  242 (313)
T ss_dssp             TTSCEEEE
T ss_pred             cCCCEEEE
Confidence            99964433

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-37  Score=275.02  Aligned_cols=286  Identities=17%  Similarity=0.251  Sum_probs=223.4

Q ss_pred             cCCcC--eeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc-cccceEEEEEecCCCEEEEEeCCCeEEEEEcCCc
Q psy17243         24 GHLNT--VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS-HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA  100 (392)
Q Consensus        24 ~h~~~--v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  100 (392)
                      +|...  +.+++|++  ..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++++.||.|++||+.++
T Consensus        89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  166 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ  166 (401)
T ss_dssp             TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence            45544  44566665  4688888999999999999998887775 7889999999999999999999999999999998


Q ss_pred             eeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEE
Q psy17243        101 QLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK  177 (392)
Q Consensus       101 ~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  177 (392)
                      +.+..+   ...+.++.|  +++.+++++.|+.|++||++...  ........|...|.+++|+|++++|++++.|+.|+
T Consensus       167 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~  242 (401)
T 4aez_A          167 TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN--HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ  242 (401)
T ss_dssp             CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc--ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence            876654   456788888  56799999999999999997432  23444557899999999999999999999999999


Q ss_pred             EEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEec--CCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        178 VWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS--KDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       178 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      +||+++++++..+..|...|.+++|+|.+..++++++  .|+.|++||+.+++.+..+. +...|.+++|+|+++++++.
T Consensus       243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~  321 (401)
T 4aez_A          243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMST  321 (401)
T ss_dssp             EEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEE
T ss_pred             EccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEE
Confidence            9999999999999999999999999977788888876  89999999999999988886 66789999999999999883


Q ss_pred             --CCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChh
Q psy17243        256 --LPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPE  333 (392)
Q Consensus       256 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~d  333 (392)
                        ..++.                   ...|....+.....             ..+.+         +.......+|+||
T Consensus       322 ~g~~dg~-------------------i~v~~~~~~~~~~~-------------~~~~~---------h~~~v~~~~~s~d  360 (401)
T 4aez_A          322 HGFPDNN-------------------LSIWSYSSSGLTKQ-------------VDIPA---------HDTRVLYSALSPD  360 (401)
T ss_dssp             ECTTTCE-------------------EEEEEEETTEEEEE-------------EEEEC---------CSSCCCEEEECTT
T ss_pred             eecCCCc-------------------EEEEecCCccceeE-------------EEecC---------CCCCEEEEEECCC
Confidence              22211                   12222221110000             00000         1111222268999


Q ss_pred             hhhhhcccChHHHHHHhhCCCCCCc
Q psy17243        334 QAALAQSQHFDQLEALWNKKSPPRS  358 (392)
Q Consensus       334 g~~la~s~~~d~~i~~Wd~~~~~~~  358 (392)
                      |++|+ +++.||.|++||+.+++..
T Consensus       361 g~~l~-s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          361 GRILS-TAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             SSEEE-EECTTSEEEEEECCC----
T ss_pred             CCEEE-EEeCCCcEEEEECCCCccc
Confidence            99998 9999999999999888763

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.4e-37  Score=272.18  Aligned_cols=252  Identities=11%  Similarity=0.159  Sum_probs=217.2

Q ss_pred             CccCCeEEEEECCCccceeeecc-----CCcCeeEEEecCC----CCeEEEEeCCCeEEEEeCCCCceeEEecccccceE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEG-----HLNTVSCVAISPN----SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTIL   72 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~~~----~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~   72 (392)
                      ++.++.|++||+.+++.+..+..     |...|++++|+|+    +++|++|+.||.|++||+.+++.+..+..|...|.
T Consensus        40 ~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~  119 (366)
T 3k26_A           40 TVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAIN  119 (366)
T ss_dssp             EEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEE
T ss_pred             ECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEE
Confidence            45678999999998888777764     5578999999998    67999999999999999999999999999999999


Q ss_pred             EEEEec-CCCEEEEEeCCCeEEEEEcCCceeeeec------ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc-
Q psy17243         73 AVAVLS-DSRRVVTSDKAGVIAVWVADNAQLLYSA------LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD-  144 (392)
Q Consensus        73 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-  144 (392)
                      +++|+| ++++|++++.||.|++||+.+++.+..+      ...+.+++|+|++++|++++.|+.|++||++....... 
T Consensus       120 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  199 (366)
T 3k26_A          120 ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI  199 (366)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence            999999 8999999999999999999998876653      45789999999999999999999999999975321110 


Q ss_pred             ------------------------ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe--------------E
Q psy17243        145 ------------------------ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK--------------L  186 (392)
Q Consensus       145 ------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~  186 (392)
                                              ......|...|.+++|+  +++|++++.|+.|++||+++++              .
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  277 (366)
T 3k26_A          200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI  277 (366)
T ss_dssp             HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEE
T ss_pred             ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhe
Confidence                                    11112388999999998  7799999999999999998764              3


Q ss_pred             EEEEecCCCceeEEEEecCC--CcEEEEecCCCeEEEEECCCCcee----eeeccc--ccceeEEEEcCCCeEEEEcC
Q psy17243        187 AQVLVGHTDHVSCVAVAVTN--KSLVVSGSKDSNLIVWDMETGGEE----HFLAGH--LGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       187 ~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~--~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +..+..|...|++++|+ ++  +.+|++++.||.|++||+.+++..    ..+..|  ...|.+++|+|++++++++.
T Consensus       278 ~~~~~~~~~~v~~~~~s-~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  354 (366)
T 3k26_A          278 LGRFDYSQCDIWYMRFS-MDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC  354 (366)
T ss_dssp             EEEEECSSCCSSCCCCE-ECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             eccccccCCcEEEEEEc-CCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence            77888999999999999 45  889999999999999999987643    367777  78999999999999888764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.6e-38  Score=274.15  Aligned_cols=236  Identities=14%  Similarity=0.166  Sum_probs=191.2

Q ss_pred             eeeccCCcCeeEEEecCCCCeE-EEEeC---CCeEEEEeCCCCceeEEe-cccccceEEEEEecC---CCEEEEEeCCCe
Q psy17243         20 STMEGHLNTVSCVAISPNSIFA-VSGSE---DNTAKVWGLTLGSVVSTF-KSHQSTILAVAVLSD---SRRVVTSDKAGV   91 (392)
Q Consensus        20 ~~~~~h~~~v~~~~~~~~~~~l-~~~~~---dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~d~~   91 (392)
                      ..+++|...|.+++|+|++..+ ++++.   ||.|++||+.+++..... ..|...|.+++|+|+   +++|++++.|+.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            3456799999999999988654 56665   999999999998875443 368999999999998   699999999999


Q ss_pred             EEEEEcCCce-eeee---cccceeEEE------EeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecc----ccceEE
Q psy17243         92 IAVWVADNAQ-LLYS---ALGPSKCLT------VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH----SEEITC  157 (392)
Q Consensus        92 i~iwd~~~~~-~~~~---~~~~~~~~~------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----~~~v~~  157 (392)
                      |++||+.+++ .+..   +...+.++.      ++|++++|++++.|+.|++||++....  .......+    ...+.+
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--PVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS--CSEEECCCTTSCCCCEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC--cceeccccCCCCCCceEE
Confidence            9999999876 4443   455778884      578999999999999999999986542  12222222    347888


Q ss_pred             EE----EEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecC--CCcEEEEecCCCeEEEEECCCCceee
Q psy17243        158 FT----VTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT--NKSLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       158 ~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      ++    |+|++++|++++.|+.|++||+++++.... ..|...|.+++|+|.  ++.+|++++.||.|++||+++++.+.
T Consensus       170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  248 (357)
T 3i2n_A          170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK  248 (357)
T ss_dssp             EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred             EEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence            88    678999999999999999999999987554 568899999999953  78899999999999999999877665


Q ss_pred             eec-----ccccceeEEEEcCCCe-EEEEcCCC
Q psy17243        232 FLA-----GHLGCVTCVKLAGDGT-VAMSDLPP  258 (392)
Q Consensus       232 ~~~-----~~~~~v~~~~~~~dg~-~~~~~~~~  258 (392)
                      .+.     +|...|.+++|+|++. +++++..+
T Consensus       249 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  281 (357)
T 3i2n_A          249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA  281 (357)
T ss_dssp             EEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC
Confidence            554     8999999999999998 77776543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=269.13  Aligned_cols=242  Identities=15%  Similarity=0.190  Sum_probs=205.4

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC--CCceeEEecccccceEEEEEecC--CCEEEEEeCCCe
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT--LGSVVSTFKSHQSTILAVAVLSD--SRRVVTSDKAGV   91 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~   91 (392)
                      |+++..+.+|...|++++|+|++++|++++.||.|++||+.  +++.+..+.+|...|.+++|+++  +++|++++.||.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            45677889999999999999999999999999999999998  66778889999999999999977  899999999999


Q ss_pred             EEEEEcCCce--eeee---cccceeEEEEeCC--CCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc--
Q psy17243         92 IAVWVADNAQ--LLYS---ALGPSKCLTVTHN--MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW--  162 (392)
Q Consensus        92 i~iwd~~~~~--~~~~---~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~--  162 (392)
                      |++||+.+++  .+..   +...+.+++|+|+  +.++++++.|+.|++||++....... .....|...|.+++|+|  
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE-EEEECCTTCEEEEEECCCC
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee-EEecCCCCceEEEEEcCcc
Confidence            9999999886  3333   4568899999999  99999999999999999986543332 33457889999999999  


Q ss_pred             -----------CCCEEEEeeCCCcEEEEEcCCCe----EEEEEecCCCceeEEEEecCC--CcEEEEecCCCeEEEEECC
Q psy17243        163 -----------DSQYLITGSRDMSLKVWQVVGGK----LAQVLVGHTDHVSCVAVAVTN--KSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       163 -----------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~  225 (392)
                                 ++.+|++++.|+.|++||+++++    ....+.+|...|.+++|+|..  +.+|++++.||.|++||++
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~  239 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  239 (379)
T ss_dssp             ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence                       69999999999999999998764    456778899999999999543  8999999999999999999


Q ss_pred             CCc-----eeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        226 TGG-----EEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       226 ~~~-----~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      +++     .+.....|...|.+++|+|+|++++++..+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  277 (379)
T 3jrp_A          240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  277 (379)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred             CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence            864     222334488899999999999999887533

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.9e-38  Score=282.32  Aligned_cols=229  Identities=14%  Similarity=0.197  Sum_probs=189.1

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc-----------eeEEecccc------------cceEEEEEecCC-
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS-----------VVSTFKSHQ------------STILAVAVLSDS-   80 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~-   80 (392)
                      |.+.|++++|+|++++|++|+.||.|+|||+.+++           ....+.+|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            78999999999999999999999999999999877           577888898            889999999998 


Q ss_pred             -CEEEEEeCCCeEEEEEcCCcee-------------------------------------------eeecccceeEEEEe
Q psy17243         81 -RRVVTSDKAGVIAVWVADNAQL-------------------------------------------LYSALGPSKCLTVT  116 (392)
Q Consensus        81 -~~l~~~~~d~~i~iwd~~~~~~-------------------------------------------~~~~~~~~~~~~~~  116 (392)
                       ..|++++.|+.|++||+.+++.                                           ...+...+.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             7999999999999999987543                                           12355678899999


Q ss_pred             CCCCEEEEecCCCcEEEEeCCCCCCCCcc-----eeeeccccceEEEEEEcCC-CEEEEeeCCCcEEEEEcCCCeE----
Q psy17243        117 HNMKYIVSGDGDNSLRIWPTSPQTHKDDE-----RFTVSHSEEITCFTVTWDS-QYLITGSRDMSLKVWQVVGGKL----  186 (392)
Q Consensus       117 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----  186 (392)
                      |++++|+++ .|+.|++||++........     .....|...|.+++|+|++ ++|++++.||.|++||+++++.    
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  265 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH  265 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence            999999999 7999999999732111100     0134688899999999998 9999999999999999999886    


Q ss_pred             EEEEecCCC------------ceeEEEEecCCCcEEEEecCCCeEEEEECCC-Cceeeeecccccce-------------
Q psy17243        187 AQVLVGHTD------------HVSCVAVAVTNKSLVVSGSKDSNLIVWDMET-GGEEHFLAGHLGCV-------------  240 (392)
Q Consensus       187 ~~~~~~~~~------------~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v-------------  240 (392)
                      +..+..|..            .|.+++|+ +++.+|++++. +.|++||+++ ++++..+.+|...+             
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          266 SKLFEEPEDPSNRSFFSEIISSISDVKFS-HSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             CEEECCC-----CCHHHHHTTCEEEEEEC-TTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred             eeEeccCCCccccccccccCceEEEEEEC-CCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence            788888876            89999999 68889999988 9999999997 88888888775422             


Q ss_pred             --eEEEEcCCCeEEEEcC
Q psy17243        241 --TCVKLAGDGTVAMSDL  256 (392)
Q Consensus       241 --~~~~~~~dg~~~~~~~  256 (392)
                        ..++|+|++++++++.
T Consensus       344 ~~~~~~~s~~~~~l~s~s  361 (447)
T 3dw8_B          344 DKFECCWNGSDSVVMTGS  361 (447)
T ss_dssp             CCCCEEECTTSSEEEEEC
T ss_pred             cceEEEECCCCCEEEEec
Confidence              2377777777776654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.2e-37  Score=269.79  Aligned_cols=245  Identities=12%  Similarity=0.226  Sum_probs=207.3

Q ss_pred             CCeEEEEECCCccceeee-ccCCcCeeEEEecCC---CCeEEEEeCCCeEEEEeCCCCc-eeEEecccccceEEEEE---
Q psy17243          5 DCLVNVWQMNSHELQSTM-EGHLNTVSCVAISPN---SIFAVSGSEDNTAKVWGLTLGS-VVSTFKSHQSTILAVAV---   76 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~---~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~---   76 (392)
                      ||.|++||+.+++..... .+|...|.+++|+|+   +++|++++.||.|++||+.+++ .+..+..|...|.++.|   
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  122 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG  122 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESG
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccc
Confidence            999999999988766543 369999999999998   6999999999999999999988 88999999999999965   


Q ss_pred             ---ecCCCEEEEEeCCCeEEEEEcCCce-eeeecc---c----ceeEEE----EeCCCCEEEEecCCCcEEEEeCCCCCC
Q psy17243         77 ---LSDSRRVVTSDKAGVIAVWVADNAQ-LLYSAL---G----PSKCLT----VTHNMKYIVSGDGDNSLRIWPTSPQTH  141 (392)
Q Consensus        77 ---~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~---~----~~~~~~----~~~~~~~l~~~~~d~~i~~~d~~~~~~  141 (392)
                         +|++++|++++.|+.|++||+.+++ .+..+.   +    .+.++.    ++++++++++++.|+.|++||++....
T Consensus       123 ~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  202 (357)
T 3i2n_A          123 LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL  202 (357)
T ss_dssp             GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE
T ss_pred             cccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce
Confidence               6789999999999999999999876 444332   2    566777    788999999999999999999975432


Q ss_pred             CCcceeeeccccceEEEEEEc---CCCEEEEeeCCCcEEEEEcCCCeEEEEEe-----cCCCceeEEEEecCCCcEEEEe
Q psy17243        142 KDDERFTVSHSEEITCFTVTW---DSQYLITGSRDMSLKVWQVVGGKLAQVLV-----GHTDHVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~  213 (392)
                          .....+...|.+++|+|   ++++|++++.||.|++||+++++....+.     +|...|++++|+|.+..+|+++
T Consensus       203 ----~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  278 (357)
T 3i2n_A          203 ----RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA  278 (357)
T ss_dssp             ----EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             ----eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence                33456889999999999   89999999999999999998876554443     8999999999995444489999


Q ss_pred             cCCCeEEEEECCCC-------------------ceeeeecccccceeEEEEcCCCeEEE
Q psy17243        214 SKDSNLIVWDMETG-------------------GEEHFLAGHLGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       214 ~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~~~dg~~~~  253 (392)
                      +.||.|++||++++                   +.+..+.+|...|.+++|+|+|++++
T Consensus       279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  337 (357)
T 3i2n_A          279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC  337 (357)
T ss_dssp             ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred             eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence            99999999999854                   35667788999999999999988776

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.3e-37  Score=273.11  Aligned_cols=321  Identities=14%  Similarity=0.149  Sum_probs=222.2

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEec-------------ccccc
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFK-------------SHQST   70 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-------------~~~~~   70 (392)
                      ++.+++|+++..+....+.+|.+.|++++|+| ++++|++++.||.|++||+++++....+.             +|...
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS  101 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred             cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence            45678898888888899999999999999999 99999999999999999999887655443             58999


Q ss_pred             eEEEEEec-CCCEEEEEeCCCeEEEEEcCCceeeee--cccceeEEEEeCC---CCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         71 ILAVAVLS-DSRRVVTSDKAGVIAVWVADNAQLLYS--ALGPSKCLTVTHN---MKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        71 v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      |.+++|+| ++.+|++++.|+.|++||+.+++.+..  ....+.++.+++.   +.++++++.++.|++||++..   ..
T Consensus       102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~  178 (408)
T 4a11_B          102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG---SC  178 (408)
T ss_dssp             EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS---CC
T ss_pred             EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc---ce
Confidence            99999999 778999999999999999999887654  4557788888884   459999999999999999744   33


Q ss_pred             ceeeeccccceEEEEEEcCCC-EEEEeeCCCcEEEEEcCCCe-EEEEE---------------ecCCCceeEEEEecCCC
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQ-YLITGSRDMSLKVWQVVGGK-LAQVL---------------VGHTDHVSCVAVAVTNK  207 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~  207 (392)
                      ......|...|.+++|+|+++ +|++++.||.|++||++++. ++..+               ..|...|.+++|+ +++
T Consensus       179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~  257 (408)
T 4a11_B          179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT-SDG  257 (408)
T ss_dssp             CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC-TTS
T ss_pred             eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc-CCC
Confidence            444557899999999999988 58999999999999998765 44444               5688999999999 678


Q ss_pred             cEEEEecCCCeEEEEECCCCceeeeeccccc------ceeE---------EEEcCCCeEEEEcCCCCCCCCCCCcccccc
Q psy17243        208 SLVVSGSKDSNLIVWDMETGGEEHFLAGHLG------CVTC---------VKLAGDGTVAMSDLPPSRPAGPKRPLRRLL  272 (392)
Q Consensus       208 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~---------~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  272 (392)
                      .+|++++.||.|++||+.+++....+..+..      ....         +....++.+.+++....+.      .    
T Consensus       258 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~----  327 (408)
T 4a11_B          258 LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ------I----  327 (408)
T ss_dssp             SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE------E----
T ss_pred             CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc------e----
Confidence            8999999999999999998876554432211      1111         1112345555554322110      0    


Q ss_pred             ccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCC----------CCChhhhhhhcccC
Q psy17243        273 KKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQ----------GLGPEQAALAQSQH  342 (392)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~----------~~s~dg~~la~s~~  342 (392)
                                 ....+|...+..+.   ..+++.++++++.|+.+++|........          .+.|.......+.+
T Consensus       328 -----------~~~~~~~~~v~~~~---~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (408)
T 4a11_B          328 -----------TMLKGHYKTVDCCV---FQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSD  393 (408)
T ss_dssp             -----------EEECCCSSCEEEEE---EETTTTEEEEEETTSCEEEEEECC----------------------------
T ss_pred             -----------eeeccCCCeEEEEE---EcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEeccccccccceeecccC
Confidence                       11113333333322   2345667888888888888876533211          33444333444667


Q ss_pred             hHHHHHHhhCC
Q psy17243        343 FDQLEALWNKK  353 (392)
Q Consensus       343 ~d~~i~~Wd~~  353 (392)
                      .|+.+++|+..
T Consensus       394 ~~~~~~~W~~~  404 (408)
T 4a11_B          394 EEGGTSAWSHP  404 (408)
T ss_dssp             -----------
T ss_pred             ccCceeecCCc
Confidence            78888888654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.6e-36  Score=265.36  Aligned_cols=224  Identities=15%  Similarity=0.131  Sum_probs=195.8

Q ss_pred             CCccCCeEEEEECCCcc--ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEE--ecccccceEEEEE
Q psy17243          1 MGGMDCLVNVWQMNSHE--LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST--FKSHQSTILAVAV   76 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~   76 (392)
                      +|+.|+.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.||.|++||+++++....  +..|...|.+++|
T Consensus        25 ~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~  104 (372)
T 1k8k_C           25 ICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW  104 (372)
T ss_dssp             EECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE
T ss_pred             EEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEE
Confidence            36789999999999887  8888999999999999999999999999999999999998875544  3568999999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCcee---ee----ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCC---------
Q psy17243         77 LSDSRRVVTSDKAGVIAVWVADNAQL---LY----SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT---------  140 (392)
Q Consensus        77 ~~~~~~l~~~~~d~~i~iwd~~~~~~---~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------  140 (392)
                      +|++++|++++.++.|++||++.++.   ..    .+...+.+++|+|++++|++++.|+.|++||++...         
T Consensus       105 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  184 (372)
T 1k8k_C          105 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP  184 (372)
T ss_dssp             CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBT
T ss_pred             CCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccc
Confidence            99999999999999999999988752   21    235678999999999999999999999999975221         


Q ss_pred             ------CCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEec
Q psy17243        141 ------HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       141 ------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  214 (392)
                            ..........|...|.+++|+|++++|++++.|+.|++||+++++++..+..|...|.+++|+ +++.+++++ 
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~-  262 (372)
T 1k8k_C          185 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI-TESSLVAAG-  262 (372)
T ss_dssp             TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE-ETTEEEEEE-
T ss_pred             cccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEe-cCCCEEEEE-
Confidence                  122333344788899999999999999999999999999999999999999999999999999 567788877 


Q ss_pred             CCCeEEEEECCC
Q psy17243        215 KDSNLIVWDMET  226 (392)
Q Consensus       215 ~dg~i~iwd~~~  226 (392)
                      .|+.|++|++.+
T Consensus       263 ~d~~i~i~~~~~  274 (372)
T 1k8k_C          263 HDCFPVLFTYDS  274 (372)
T ss_dssp             TTSSCEEEEEET
T ss_pred             eCCeEEEEEccC
Confidence            899999999987

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.9e-38  Score=279.17  Aligned_cols=235  Identities=14%  Similarity=0.162  Sum_probs=196.4

Q ss_pred             eccCCcCeeEEEecCC----CCeEEEEeCCCeEEEEeCCCCceeEEecc-----cccceEEEEEecC----CCEEEEEeC
Q psy17243         22 MEGHLNTVSCVAISPN----SIFAVSGSEDNTAKVWGLTLGSVVSTFKS-----HQSTILAVAVLSD----SRRVVTSDK   88 (392)
Q Consensus        22 ~~~h~~~v~~~~~~~~----~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~   88 (392)
                      ..+|..+|++++|+|+    ...+++++.++.|++||+.+++.+..+..     |...|.+++|+|+    +++|++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            4579999999999984    45666677778999999998888777764     4577999999999    669999999


Q ss_pred             CCeEEEEEcCCceeeee---cccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCC
Q psy17243         89 AGVIAVWVADNAQLLYS---ALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS  164 (392)
Q Consensus        89 d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (392)
                      ||.|++||+.+++.+..   +...+.+++|+| ++++|++++.||.|++||++.............|...|.+++|+|++
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  173 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG  173 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC
Confidence            99999999999887654   445789999999 99999999999999999997543222211114789999999999999


Q ss_pred             CEEEEeeCCCcEEEEEcCCCeEEEEEe----------------------------cCCCceeEEEEecCCCcEEEEecCC
Q psy17243        165 QYLITGSRDMSLKVWQVVGGKLAQVLV----------------------------GHTDHVSCVAVAVTNKSLVVSGSKD  216 (392)
Q Consensus       165 ~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~~~l~~~~~d  216 (392)
                      ++|++++.||.|++||+++++....+.                            .|...|.+++|+   +.++++++.|
T Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d  250 (366)
T 3k26_A          174 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCE  250 (366)
T ss_dssp             SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSS
T ss_pred             CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecC
Confidence            999999999999999998775443332                            389999999998   5699999999


Q ss_pred             CeEEEEECCCCce--------------eeeecccccceeEEEEcCC--CeEEEEcCCCC
Q psy17243        217 SNLIVWDMETGGE--------------EHFLAGHLGCVTCVKLAGD--GTVAMSDLPPS  259 (392)
Q Consensus       217 g~i~iwd~~~~~~--------------~~~~~~~~~~v~~~~~~~d--g~~~~~~~~~~  259 (392)
                      +.|++||+.+++.              +..+..|...|.+++|+|+  +++++++..++
T Consensus       251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  309 (366)
T 3k26_A          251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG  309 (366)
T ss_dssp             SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred             CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence            9999999988754              6778889999999999999  99999886543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=255.89  Aligned_cols=243  Identities=17%  Similarity=0.271  Sum_probs=213.1

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC---ceeEEecccccceEEEEEe
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG---SVVSTFKSHQSTILAVAVL   77 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~   77 (392)
                      +|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|++...   +.+..+..|...|.++.| 
T Consensus        34 s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  112 (313)
T 3odt_A           34 SVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-  112 (313)
T ss_dssp             EEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-
T ss_pred             EEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-
Confidence            4789999999999999999999999999999999999999999999999999998764   567788889999999999 


Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCceee---eecccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeecccc
Q psy17243         78 SDSRRVVTSDKAGVIAVWVADNAQLL---YSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        78 ~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                       +++++++++.|+.|++||  .++.+   ..+..++.++.+.| +++.+++++.|+.|++||..    .........+..
T Consensus       113 -~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~  185 (313)
T 3odt_A          113 -QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND----KVIKTFSGIHND  185 (313)
T ss_dssp             -ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT----EEEEEECSSCSS
T ss_pred             -cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC----ceEEEEeccCcc
Confidence             577999999999999999  33333   33556788899888 99999999999999999943    222233334889


Q ss_pred             ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee
Q psy17243        154 EITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                      .+.+++|+|++. +++++.|+.|++||+++++++..+.+|...|++++|+| ++ .|++++.||.|++||+.+++.+..+
T Consensus       186 ~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~  262 (313)
T 3odt_A          186 VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVI  262 (313)
T ss_dssp             CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred             cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEE
Confidence            999999999987 99999999999999999999999999999999999994 45 5888999999999999999999999


Q ss_pred             cccccceeEEEEcCCCeEEEE
Q psy17243        234 AGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       234 ~~~~~~v~~~~~~~dg~~~~~  254 (392)
                      ..|...|.+++|+|++++++.
T Consensus       263 ~~~~~~i~~~~~~~~~~~~~~  283 (313)
T 3odt_A          263 TLPAISIWSVDCMSNGDIIVG  283 (313)
T ss_dssp             ECSSSCEEEEEECTTSCEEEE
T ss_pred             eccCceEEEEEEccCCCEEEE
Confidence            999999999999999986554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.1e-35  Score=256.15  Aligned_cols=249  Identities=24%  Similarity=0.390  Sum_probs=212.5

Q ss_pred             CCccCCeEEEEECCCcc-----ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEE
Q psy17243          1 MGGMDCLVNVWQMNSHE-----LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVA   75 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~   75 (392)
                      ||+.||+|+|||+.+.+     ....+.+|...|.+++|+|++++|++++.|+.|++|+............+...+..+.
T Consensus        56 S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  135 (340)
T 4aow_A           56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA  135 (340)
T ss_dssp             EEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEE
Confidence            58899999999987643     4567889999999999999999999999999999999999999888888899999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCceeee----ecccceeEEEEeCCC--CEEEEecCCCcEEEEeCCCCCCCCcceeee
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQLLY----SALGPSKCLTVTHNM--KYIVSGDGDNSLRIWPTSPQTHKDDERFTV  149 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  149 (392)
                      +.+++++|++++.|+.+++||+.......    .+...+.++.+++++  .++++++.|+.|++||++..   .......
T Consensus       136 ~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~  212 (340)
T 4aow_A          136 FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---KLKTNHI  212 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---EEEEEEC
T ss_pred             EeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---ceeeEec
Confidence            99999999999999999999998765433    234567788887754  57889999999999999743   3444556


Q ss_pred             ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      +|...|++++|+|++++|++++.|+.|++||+++.+++..+.. ...+.+++|+ +++.+ ++++.|+.|++||++++..
T Consensus       213 ~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~-~~~~~-~~~~~d~~i~iwd~~~~~~  289 (340)
T 4aow_A          213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFS-PNRYW-LCAATGPSIKIWDLEGKII  289 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEEC-SSSSE-EEEEETTEEEEEETTTTEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecC-CCCce-eeccCCCEEEEEECCCCeE
Confidence            7899999999999999999999999999999999999988874 5689999999 55554 5566799999999998876


Q ss_pred             eeeec---------ccccceeEEEEcCCCeEEEEc
Q psy17243        230 EHFLA---------GHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       230 ~~~~~---------~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      +..+.         +|...|++++|+|||++++++
T Consensus       290 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg  324 (340)
T 4aow_A          290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG  324 (340)
T ss_dssp             EEEECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred             EEeccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence            65543         577889999999998887775

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-38  Score=285.14  Aligned_cols=236  Identities=8%  Similarity=-0.015  Sum_probs=191.6

Q ss_pred             CCcCeeEEEecCCC---------CeEEE-------------------EeCCCeEEEEeCCCCcee----EEecccccceE
Q psy17243         25 HLNTVSCVAISPNS---------IFAVS-------------------GSEDNTAKVWGLTLGSVV----STFKSHQSTIL   72 (392)
Q Consensus        25 h~~~v~~~~~~~~~---------~~l~~-------------------~~~dg~v~iwd~~~~~~~----~~~~~~~~~v~   72 (392)
                      +.+.|.+|+|+|++         ++||+                   ++.|++|+|||+.+++..    ..+..|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            67889999999876         56666                   457889999999887643    34566788999


Q ss_pred             EEEEecC------CCEEEEEeCCCeEEEEEcCCcee--------------eeecccceeEEEEeCCCCEEEEecCCCcEE
Q psy17243         73 AVAVLSD------SRRVVTSDKAGVIAVWVADNAQL--------------LYSALGPSKCLTVTHNMKYIVSGDGDNSLR  132 (392)
Q Consensus        73 ~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  132 (392)
                      +++|+|+      +.+|++++.||+|++||+.++..              +..+...+.+++|+++ ..|++|+.||.|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence            9999996      57999999999999999986632              1224467899999986 4899999999999


Q ss_pred             EEeCCCCCCCCcceeeeccccceEEE--EEEcCC-CEEEEeeCCCcEEEEEcCCCeEEEEEecCCC--ceeEEEEecCCC
Q psy17243        133 IWPTSPQTHKDDERFTVSHSEEITCF--TVTWDS-QYLITGSRDMSLKVWQVVGGKLAQVLVGHTD--HVSCVAVAVTNK  207 (392)
Q Consensus       133 ~~d~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~  207 (392)
                      +||+++..  ........|...|.++  +|+|++ .+|++++.|++|++||++++++...+.+|..  .|.+++|+ +++
T Consensus       291 lWD~~~~~--~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs-p~~  367 (524)
T 2j04_B          291 EFDLTDPE--VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC-PQI  367 (524)
T ss_dssp             EEETTBCS--SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE-TTT
T ss_pred             EEECCCCC--CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeC-CCc
Confidence            99997542  2233455799999999  567887 8999999999999999999887777776653  57899999 567


Q ss_pred             cEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCC
Q psy17243        208 SLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGP  264 (392)
Q Consensus       208 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~  264 (392)
                      ..+++++.|++|++||++++.++..+.+|.+.|++++|+|+|++++++..++....+
T Consensus       368 ~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lw  424 (524)
T 2j04_B          368 YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIIT  424 (524)
T ss_dssp             TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECC
T ss_pred             CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEE
Confidence            789999999999999999999888899999999999999999999999877665444

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.1e-36  Score=265.10  Aligned_cols=251  Identities=14%  Similarity=0.217  Sum_probs=209.1

Q ss_pred             CCccCCeEEEEECCCccceeeec--cCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEeccc---ccceEEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTME--GHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH---QSTILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~   74 (392)
                      +|+.||.|++||+.+++....+.  +|...|.+++|+| ++++|++++.|+.|++||++. ..+..+..+   ...|.++
T Consensus        91 s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~  169 (383)
T 3ei3_B           91 VGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCV  169 (383)
T ss_dssp             EEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEE
T ss_pred             EEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEE
Confidence            47889999999999888877765  6999999999999 789999999999999999986 555555443   4789999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCceeee---ecccceeEEEEeCCCC-EEEEecCCCcEEEEeCCCCCCCCcceeeec
Q psy17243         75 AVLSDSRRVVTSDKAGVIAVWVADNAQLLY---SALGPSKCLTVTHNMK-YIVSGDGDNSLRIWPTSPQTHKDDERFTVS  150 (392)
Q Consensus        75 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  150 (392)
                      +|+|++++|++++.|+.|++||+. ++.+.   .+...+.+++|+|+++ ++++++.|+.|++||++.............
T Consensus       170 ~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  248 (383)
T 3ei3_B          170 DVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP  248 (383)
T ss_dssp             EEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE
T ss_pred             EECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec
Confidence            999999999999999999999995 44433   3456889999999999 999999999999999986544344444447


Q ss_pred             cccceEEEEEEc-CCCEEEEeeCCCcEEEEEcCCCeEEEEEecCC-------C----------ceeEEEEecCCCcEEEE
Q psy17243        151 HSEEITCFTVTW-DSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT-------D----------HVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       151 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~----------~v~~~~~~~~~~~~l~~  212 (392)
                      |...|.+++|+| ++++|++++.|+.|++||+++++....+.+|.       .          .+..++|+ +++.+  +
T Consensus       249 ~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s-~dg~~--s  325 (383)
T 3ei3_B          249 HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY-PDDQL--L  325 (383)
T ss_dssp             CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB-CCTTT--C
T ss_pred             CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEec-CCccc--c
Confidence            899999999999 99999999999999999999887766666543       2          23345555 34444  7


Q ss_pred             ecCCCeEEEEECCCCceeeeecc--cccceeEEEEcCCCeEEEEcC
Q psy17243        213 GSKDSNLIVWDMETGGEEHFLAG--HLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       213 ~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ++.|+.|++||+.+++.+..+.+  |...+..++|+|+|++++++.
T Consensus       326 ~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          326 LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM  371 (383)
T ss_dssp             TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred             cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence            78999999999999999999887  456788889999999999974

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-35  Score=263.65  Aligned_cols=252  Identities=17%  Similarity=0.241  Sum_probs=217.4

Q ss_pred             CCccCCeEEEEECCCccceeeecc-CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEG-HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      +++.||.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+++++.+..+..|...|.+++|+  
T Consensus       108 ~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--  185 (401)
T 4aez_A          108 AVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--  185 (401)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--
T ss_pred             EEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--
Confidence            467899999999999998888776 89999999999999999999999999999999999999999999999999994  


Q ss_pred             CCEEEEEeCCCeEEEEEcCC-cee---eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         80 SRRVVTSDKAGVIAVWVADN-AQL---LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      ++.+++++.||.|++||++. ...   +..+...+.+++|+|++++|++++.|+.|++||++.   .........|...|
T Consensus       186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~v  262 (401)
T 4aez_A          186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS---SIPKFTKTNHNAAV  262 (401)
T ss_dssp             TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC---SSEEEEECCCSSCC
T ss_pred             CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC---CCccEEecCCcceE
Confidence            57999999999999999984 333   334566889999999999999999999999999974   33334445788999


Q ss_pred             EEEEEEcCC-CEEEEee--CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEE--ecCCCeEEEEECCCCcee
Q psy17243        156 TCFTVTWDS-QYLITGS--RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS--GSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       156 ~~~~~~~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~  230 (392)
                      .+++|+|++ .++++++  .|+.|++||+++++++..+. +...+.+++|+ +++.++++  |+.||.|++||+.+++..
T Consensus       263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s-~~~~~l~~~~g~~dg~i~v~~~~~~~~~  340 (401)
T 4aez_A          263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWS-PHSKEIMSTHGFPDNNLSIWSYSSSGLT  340 (401)
T ss_dssp             CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEC-SSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred             EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEEC-CCCCeEEEEeecCCCcEEEEecCCccce
Confidence            999999976 4566654  79999999999999988886 67889999999 56777777  558999999999986654


Q ss_pred             e--eecccccceeEEEEcCCCeEEEEcCCCC
Q psy17243        231 H--FLAGHLGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       231 ~--~~~~~~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      .  .+.+|...|.+++|+|+|++++++..++
T Consensus       341 ~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          341 KQVDIPAHDTRVLYSALSPDGRILSTAASDE  371 (401)
T ss_dssp             EEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred             eEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            4  4678999999999999999999986543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.9e-36  Score=268.84  Aligned_cols=252  Identities=16%  Similarity=0.172  Sum_probs=209.9

Q ss_pred             CCccCCeEEEEECCCc----cceeeeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCC-------ceeEEecccc
Q psy17243          1 MGGMDCLVNVWQMNSH----ELQSTMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLG-------SVVSTFKSHQ   68 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~   68 (392)
                      +|+.||.|+||++.+.    +....+.+|...|++++|+| ++++|++|+.||.|++||+.++       +.+..+.+|.
T Consensus        52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~  131 (402)
T 2aq5_A           52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT  131 (402)
T ss_dssp             CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS
T ss_pred             EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC
Confidence            4788999999999653    34556788999999999999 8999999999999999999988       6678889999


Q ss_pred             cceEEEEEecCC-CEEEEEeCCCeEEEEEcCCceeeeec-----ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCC
Q psy17243         69 STILAVAVLSDS-RRVVTSDKAGVIAVWVADNAQLLYSA-----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHK  142 (392)
Q Consensus        69 ~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  142 (392)
                      ..|.+++|+|++ ++|++++.|+.|++||+.+++.+..+     ...+.+++|+|++++|++++.|+.|++||++...  
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--  209 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT--  209 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc--
Confidence            999999999998 69999999999999999999887655     4578999999999999999999999999998533  


Q ss_pred             Ccceee-eccccc-eEEEEEEcCCCEEEEe---eCCCcEEEEEcCCCeE-EEEEe-cCCCceeEEEEecCCCcEEEEecC
Q psy17243        143 DDERFT-VSHSEE-ITCFTVTWDSQYLITG---SRDMSLKVWQVVGGKL-AQVLV-GHTDHVSCVAVAVTNKSLVVSGSK  215 (392)
Q Consensus       143 ~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~  215 (392)
                       ..... ..|... +.++.|+|++++|++|   +.|+.|++||+++++. +.... .|...+.+++|+|.+..++++++.
T Consensus       210 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~  288 (402)
T 2aq5_A          210 -VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG  288 (402)
T ss_dssp             -EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred             -eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence             22222 355554 8999999999999999   7899999999988654 33332 577889999999544444457778


Q ss_pred             CCeEEEEECCCCce-eeeecc--cccceeEEEEcCCCeEEEEc
Q psy17243        216 DSNLIVWDMETGGE-EHFLAG--HLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       216 dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~~~dg~~~~~~  255 (392)
                      ||.|++||+.+++. +..+..  |...|.+++|+|++.+++++
T Consensus       289 dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~  331 (402)
T 2aq5_A          289 DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK  331 (402)
T ss_dssp             CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred             CCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence            99999999998884 444444  45899999999999887654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=249.90  Aligned_cols=250  Identities=18%  Similarity=0.278  Sum_probs=210.8

Q ss_pred             ccCCeEEEEECCCccceeeec--cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          3 GMDCLVNVWQMNSHELQSTME--GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +.|++|+|||+++++.++.++  +|...|++++|+|++++|++|+.||+|++||+++++.+..+.+|...+.++.+  ++
T Consensus        42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~  119 (318)
T 4ggc_A           42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NS  119 (318)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ET
T ss_pred             EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CC
Confidence            569999999999999888765  57888999999999999999999999999999999999999999998887665  56


Q ss_pred             CEEEEEeCCCeEEEEEcCCcee----eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCC-cceeeeccccce
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQL----LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKD-DERFTVSHSEEI  155 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~v  155 (392)
                      ..+++++.++.+++|+......    +..+...+..+.+.++++++++++.|+.|++||+++.+... .......+...|
T Consensus       120 ~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v  199 (318)
T 4ggc_A          120 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV  199 (318)
T ss_dssp             TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCE
T ss_pred             CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCce
Confidence            7999999999999999887643    23455678899999999999999999999999998654432 233445677889


Q ss_pred             EEEEEEcCCCE---EEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEE-ecCCCeEEEEECCCCceee
Q psy17243        156 TCFTVTWDSQY---LITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS-GSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       156 ~~~~~~~~~~~---l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~  231 (392)
                      .++.++|++..   +++++.++.|++||.+......... +...+..+.|+|....++++ |+.|+.|++||+++++++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~  278 (318)
T 4ggc_A          200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA  278 (318)
T ss_dssp             EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred             EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE
Confidence            99999997653   3466778999999999887766654 67789999999655554443 4579999999999999999


Q ss_pred             eecccccceeEEEEcCCCeEEEEc
Q psy17243        232 FLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      .+.+|.+.|++++|+|||++++++
T Consensus       279 ~l~gH~~~V~~l~~spdg~~l~S~  302 (318)
T 4ggc_A          279 ELKGHTSRVLSLTMSPDGATVASA  302 (318)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEE
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEE
Confidence            999999999999999999877764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-36  Score=287.35  Aligned_cols=242  Identities=15%  Similarity=0.188  Sum_probs=205.0

Q ss_pred             eeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC--CCceeEEecccccceEEEEEecC--CCEEEEEeCCCeEEE
Q psy17243         19 QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT--LGSVVSTFKSHQSTILAVAVLSD--SRRVVTSDKAGVIAV   94 (392)
Q Consensus        19 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i   94 (392)
                      +..+.+|.+.|++++|+|++++|++|+.||.|++||+.  +++.+..+.+|..+|.+++|+|+  +++|++++.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            35678999999999999999999999999999999998  55778889999999999999988  999999999999999


Q ss_pred             EEcCCce--eee---ecccceeEEEEeCC--CCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc-----
Q psy17243         95 WVADNAQ--LLY---SALGPSKCLTVTHN--MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW-----  162 (392)
Q Consensus        95 wd~~~~~--~~~---~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-----  162 (392)
                      ||+.+++  .+.   .+..++.+++|+|+  ++.+++++.||.|++||++........ ....|...|.+++|+|     
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE-EEECCSSCEEEEEECCCC---
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee-EeecCCCceEEEEecCccccc
Confidence            9999885  333   34568899999999  999999999999999999865433333 3457889999999999     


Q ss_pred             --------CCCEEEEeeCCCcEEEEEcCCC----eEEEEEecCCCceeEEEEecCC--CcEEEEecCCCeEEEEECCCCc
Q psy17243        163 --------DSQYLITGSRDMSLKVWQVVGG----KLAQVLVGHTDHVSCVAVAVTN--KSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       163 --------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                              ++++|++|+.||.|++||++++    .....+.+|...|++++|+|.+  +.+|++++.||.|++||+.+++
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence                    5899999999999999999877    5667788999999999999543  8999999999999999999864


Q ss_pred             -----eeeeecccccceeEEEEcCCCeEEEEcCCCCCC
Q psy17243        229 -----EEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRP  261 (392)
Q Consensus       229 -----~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~  261 (392)
                           .......|...|.+++|+|+|++++++..++..
T Consensus       241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I  278 (753)
T 3jro_A          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV  278 (753)
T ss_dssp             SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred             CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence                 333445688899999999999999987655443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8.7e-36  Score=267.20  Aligned_cols=281  Identities=17%  Similarity=0.251  Sum_probs=216.1

Q ss_pred             CeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec--ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee
Q psy17243         28 TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK--SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS  105 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  105 (392)
                      .++.|+|++++ +|++|. |++|+|||..+++....+.  .|...|++++|+|++++|++|+.||.|++||+++++.+..
T Consensus       107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            46779999864 677764 9999999999999877664  5778899999999999999999999999999999998877


Q ss_pred             cccce-eEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC
Q psy17243        106 ALGPS-KCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG  184 (392)
Q Consensus       106 ~~~~~-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  184 (392)
                      ..++. ...+++.++..+++++.|+.+++||....  .........|...+..+.++|+++++++++.|+.+++|+..++
T Consensus       185 ~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~--~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          185 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EeCCCCceEEEeeCCCEEEEEeCCCceeEeeeccc--ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            65432 23344556789999999999999998743  2333445688999999999999999999999999999999876


Q ss_pred             e----EEEEEecCCCceeEEEEecCCCcEEEE--ecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC--
Q psy17243        185 K----LAQVLVGHTDHVSCVAVAVTNKSLVVS--GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL--  256 (392)
Q Consensus       185 ~----~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~--  256 (392)
                      +    .+.....|...|.+++|+|.+..++++  |+.|++|++||+.+++++..+..| ..+.++.|++++..++++.  
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~  341 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF  341 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECT
T ss_pred             cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEec
Confidence            4    456677899999999999888888776  457999999999999998888754 5788999999998887643  


Q ss_pred             CCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhh
Q psy17243        257 PPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAA  336 (392)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~  336 (392)
                      .++.                   ...|....+....               .+.+         +...+...+|+|||++
T Consensus       342 ~d~~-------------------I~iwd~~~~~~v~---------------~l~g---------H~~~V~~l~~spdg~~  378 (420)
T 4gga_A          342 AQNQ-------------------LVIWKYPTMAKVA---------------ELKG---------HTSRVLSLTMSPDGAT  378 (420)
T ss_dssp             TTCC-------------------EEEEETTTCCEEE---------------EECC---------CSSCEEEEEECTTSSC
T ss_pred             CCCE-------------------EEEEECCCCcEEE---------------EEcC---------CCCCEEEEEEcCCCCE
Confidence            1111                   1222221111000               0000         0001111268999999


Q ss_pred             hhcccChHHHHHHhhCCCCCC
Q psy17243        337 LAQSQHFDQLEALWNKKSPPR  357 (392)
Q Consensus       337 la~s~~~d~~i~~Wd~~~~~~  357 (392)
                      || |++.|++|+|||+.+...
T Consensus       379 l~-S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          379 VA-SAAADETLRLWRCFELDP  398 (420)
T ss_dssp             EE-EEETTTEEEEECCSCSSC
T ss_pred             EE-EEecCCeEEEEECCCCCc
Confidence            98 999999999999976554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.1e-36  Score=271.24  Aligned_cols=255  Identities=16%  Similarity=0.195  Sum_probs=205.5

Q ss_pred             CCccCCeEEEEECCCcccee--eeccCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecc--cccceEEEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQS--TMEGHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKS--HQSTILAVA   75 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~   75 (392)
                      +|+.||.|+|||+.+++...  .+.+|.+.|++++|+| ++.+|++|+.||+|++||++++........  +...+.+++
T Consensus       137 sGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  216 (435)
T 4e54_B          137 VGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLD  216 (435)
T ss_dssp             EEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEE
T ss_pred             EEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEE
Confidence            58899999999998766443  4568999999999998 688999999999999999987654433332  344678999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCcee--eeecccceeEEEEeCCCC-EEEEecCCCcEEEEeCCCCCCCCcceeeeccc
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQL--LYSALGPSKCLTVTHNMK-YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS  152 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  152 (392)
                      |+|++++|++|+.||.|++||++....  +..+...+.+++|+|++. ++++++.|+.|++||++.............|.
T Consensus       217 ~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~  296 (435)
T 4e54_B          217 VSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR  296 (435)
T ss_dssp             EETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCS
T ss_pred             ECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecc
Confidence            999999999999999999999976433  234556899999999876 78899999999999998766655555556789


Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCC------ceeEEEEecCCCcEEEEe------------c
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTD------HVSCVAVAVTNKSLVVSG------------S  214 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~------------~  214 (392)
                      ..|++++|+|++++|++++.||.|++||+++++....+..|..      .+....|+| ++.+++++            .
T Consensus       297 ~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~  375 (435)
T 4e54_B          297 HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPY  375 (435)
T ss_dssp             SCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS-SSSCEEEECCCCTTSCCSSTT
T ss_pred             ccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC-CCCEEEEEEcCCCCeEEEEec
Confidence            9999999999999999999999999999999988777766543      223445663 33333333            2


Q ss_pred             CCCeEEEEECCCCceeeeec-ccccceeEE-EEcCCCeEEEEcC
Q psy17243        215 KDSNLIVWDMETGGEEHFLA-GHLGCVTCV-KLAGDGTVAMSDL  256 (392)
Q Consensus       215 ~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~-~~~~dg~~~~~~~  256 (392)
                      .++.|++||..+++.+..+. +|...|.++ +|+|+|++++++.
T Consensus       376 ~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~  419 (435)
T 4e54_B          376 ELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM  419 (435)
T ss_dssp             CCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence            34679999999999888764 677888887 6999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-35  Score=268.20  Aligned_cols=316  Identities=20%  Similarity=0.336  Sum_probs=246.4

Q ss_pred             ceeeeccCCcCe-eEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         18 LQSTMEGHLNTV-SCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        18 ~~~~~~~h~~~v-~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      ....+.+|...| .++.+  ++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++ .+++++.||.|++||
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence            455788998885 66665  56799999999999999999999999999999999999999888 999999999999999


Q ss_pred             cCCceeeeec---ccceeEEEEe--CCCCEEEEecCCCcEEEEeCCCCCCCCc--------------------ceeeecc
Q psy17243         97 ADNAQLLYSA---LGPSKCLTVT--HNMKYIVSGDGDNSLRIWPTSPQTHKDD--------------------ERFTVSH  151 (392)
Q Consensus        97 ~~~~~~~~~~---~~~~~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~--------------------~~~~~~~  151 (392)
                      +++++.+..+   ...+.++.++  ++++++++++.|+.|++||+........                    .....+|
T Consensus       190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (464)
T 3v7d_B          190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  269 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred             CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence            9999877654   4578888888  5789999999999999999986543221                    2334467


Q ss_pred             ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      ...+.++  +++++++++++.|+.|++||+++++++..+.+|...|.+++|+ +++.++++|+.||.|++||+++++++.
T Consensus       270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~  346 (464)
T 3v7d_B          270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLENGELMY  346 (464)
T ss_dssp             SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            7777776  6789999999999999999999999999999999999999999 678899999999999999999999999


Q ss_pred             eecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEee
Q psy17243        232 FLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSA  311 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  311 (392)
                      .+.+|...|.++.|+  +.+++++..++.                   ...|....+..                 ....
T Consensus       347 ~~~~h~~~v~~~~~~--~~~l~s~s~dg~-------------------v~vwd~~~~~~-----------------~~~~  388 (464)
T 3v7d_B          347 TLQGHTALVGLLRLS--DKFLVSAAADGS-------------------IRGWDANDYSR-----------------KFSY  388 (464)
T ss_dssp             EECCCSSCEEEEEEC--SSEEEEEETTSE-------------------EEEEETTTCCE-----------------EEEE
T ss_pred             EEeCCCCcEEEEEEc--CCEEEEEeCCCc-------------------EEEEECCCCce-----------------eeee
Confidence            999999999999997  456666543221                   11122111100                 0000


Q ss_pred             ccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCcccccC
Q psy17243        312 SMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDEFG  391 (392)
Q Consensus       312 s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d~~  391 (392)
                      .        ........+|+|++++++  ++.|+.|++||+.+++.    .........-.-.+++.+++.|+++..+.|
T Consensus       389 ~--------~~~~~~~~~~~~~~~~l~--~~~dg~i~iwd~~~g~~----~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g  454 (464)
T 3v7d_B          389 H--------HTNLSAITTFYVSDNILV--SGSENQFNIYNLRSGKL----VHANILKDADQIWSVNFKGKTLVAAVEKDG  454 (464)
T ss_dssp             E--------CTTCCCEEEEEECSSEEE--EEETTEEEEEETTTCCE----EESCTTTTCSEEEEEEEETTEEEEEEEETT
T ss_pred             c--------CCCCccEEEEEeCCCEEE--EecCCeEEEEECCCCcE----EehhhccCCCcEEEEEecCCEEEEEEEeCC
Confidence            0        000111125788888765  99999999999988655    333333332323788899999999888765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.5e-35  Score=258.44  Aligned_cols=252  Identities=10%  Similarity=0.067  Sum_probs=218.8

Q ss_pred             CCccCCeEEEEECCCcc---ceeeeccCCcCeeEEEecCCCC-eEEEEeCCCeEEEEeC-CCCceeEEecc--cccceEE
Q psy17243          1 MGGMDCLVNVWQMNSHE---LQSTMEGHLNTVSCVAISPNSI-FAVSGSEDNTAKVWGL-TLGSVVSTFKS--HQSTILA   73 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~-~~~~~~~~~~~--~~~~v~~   73 (392)
                      +|+.||.|++|++.+++   ....+.+|...|.+++|+|+++ +|++++.||.|++||+ ++++. ..+..  |...|.+
T Consensus        28 ~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~  106 (342)
T 1yfq_A           28 ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICR  106 (342)
T ss_dssp             EEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEE
T ss_pred             EEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEE
Confidence            46789999999998877   3455568999999999999999 9999999999999999 77655 77788  9999999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCC---------ceeeee--cccceeEEEEeCCCCEEEEecCCCcEEEEeCCC-CCC
Q psy17243         74 VAVLSDSRRVVTSDKAGVIAVWVADN---------AQLLYS--ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSP-QTH  141 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~  141 (392)
                      ++|+| ++.|++++.|+.|++||+.+         ++.+..  +...+.++++++++  +++++.++.|++||++. .. 
T Consensus       107 l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~-  182 (342)
T 1yfq_A          107 ICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCED-  182 (342)
T ss_dssp             EEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTT-
T ss_pred             EEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCcccc-
Confidence            99999 99999999999999999987         655433  45678899999887  99999999999999985 32 


Q ss_pred             CCcceeeeccccceEEEEEEc-CCCEEEEeeCCCcEEEEEcCCC------eEEEEEecCCC---------ceeEEEEecC
Q psy17243        142 KDDERFTVSHSEEITCFTVTW-DSQYLITGSRDMSLKVWQVVGG------KLAQVLVGHTD---------HVSCVAVAVT  205 (392)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~---------~v~~~~~~~~  205 (392)
                      .........+...+.+++|+| +++++++++.||.|++|+++..      +....+..|..         .|.+++|+ +
T Consensus       183 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~  261 (342)
T 1yfq_A          183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS-P  261 (342)
T ss_dssp             CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC-T
T ss_pred             ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc-C
Confidence            223334446788999999999 9999999999999999999887      77788888865         99999999 6


Q ss_pred             CCcEEEEecCCCeEEEEECCCCceeeeeccc-ccceeEEEEcCCCeEEEEcCCCCC
Q psy17243        206 NKSLVVSGSKDSNLIVWDMETGGEEHFLAGH-LGCVTCVKLAGDGTVAMSDLPPSR  260 (392)
Q Consensus       206 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~dg~~~~~~~~~~~  260 (392)
                      ++.+|++++.||.|++||+.+++.+..+.+| ...|.+++  |++++++++..++.
T Consensus       262 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            7888999999999999999999999999998 99999999  99999999875543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=8.1e-36  Score=268.70  Aligned_cols=223  Identities=25%  Similarity=0.481  Sum_probs=197.2

Q ss_pred             ccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee
Q psy17243         23 EGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL  102 (392)
Q Consensus        23 ~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  102 (392)
                      .+|...|.++.+  ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|  ++++|++++.||.|++||+.+++.
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            356778998887  7889999999999999999999999999999999999999  788999999999999999999988


Q ss_pred             eeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEE
Q psy17243        103 LYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVW  179 (392)
Q Consensus       103 ~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  179 (392)
                      +..+.   ..+.++.++  +..+++++.||.|++||+.............+|...|.+++|  ++++|++++.||.|++|
T Consensus       206 ~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw  281 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW  281 (435)
T ss_dssp             EEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             EEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence            76554   467777775  569999999999999999865544444556688999999998  68899999999999999


Q ss_pred             EcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        180 QVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       180 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      |+++++.+..+.+|...|.++.++   +.++++|+.||.|++||+++++++..+.+|...|.+++|  ++.+++++..+
T Consensus       282 d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~d  355 (435)
T 1p22_A          282 NTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD  355 (435)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred             ECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCC
Confidence            999999999999999999999986   579999999999999999999999999999999999998  67777776544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.8e-35  Score=260.40  Aligned_cols=256  Identities=14%  Similarity=0.197  Sum_probs=217.3

Q ss_pred             CCccCCeEEEEECCC-ccce-eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEE--
Q psy17243          1 MGGMDCLVNVWQMNS-HELQ-STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAV--   76 (392)
Q Consensus         1 tg~~dg~i~vwd~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--   76 (392)
                      +|+.||.|++||+.+ ++.+ ..+.+|...|.+++|+|++++|++++.||.|++||+++++.+. +..|...|.+++|  
T Consensus        59 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~  137 (368)
T 3mmy_A           59 AGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIK  137 (368)
T ss_dssp             EEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEE
T ss_pred             EECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEe
Confidence            478899999999987 5544 7788899999999999999999999999999999999998776 4559999999999  


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         77 LSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        77 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      +|++++|++++.|+.|++||+++++.+..+..+....++......+++++.++.+.+|+++..... .......+...+.
T Consensus       138 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~  216 (368)
T 3mmy_A          138 APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE-FRRIESPLKHQHR  216 (368)
T ss_dssp             CSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEE-EEECCCSCSSCEE
T ss_pred             CCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccch-hhhccccccCCCc
Confidence            889999999999999999999999888777666666666666778999999999999999743221 1112223455667


Q ss_pred             EEEEEcCCCE----EEEeeCCCcEEEEEcCCC---eEEEEEecCCC------------ceeEEEEecCCCcEEEEecCCC
Q psy17243        157 CFTVTWDSQY----LITGSRDMSLKVWQVVGG---KLAQVLVGHTD------------HVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       157 ~~~~~~~~~~----l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~------------~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                      ++++.++...    +++++.||.|++||++..   +.+..+..|..            .|++++|+ +++.+|++++.||
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~s~~~dg  295 (368)
T 3mmy_A          217 CVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH-PVHGTLATVGSDG  295 (368)
T ss_dssp             EEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC-TTTCCEEEEETTS
T ss_pred             eEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe-cCCCEEEEEccCC
Confidence            7777766554    999999999999999887   56677777766            79999999 6778999999999


Q ss_pred             eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCC
Q psy17243        218 NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      .|++||+.+++++..+..|...|.+++|+|+|++++++..+.
T Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          296 RFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             CEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             eEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence            999999999999999999999999999999999999987543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.1e-35  Score=252.04  Aligned_cols=225  Identities=15%  Similarity=0.226  Sum_probs=189.1

Q ss_pred             CCccCCeEEEEECCC--ccceeeeccCCcCeeEEEecCC--CCeEEEEeCCCeEEEEeCCCCc--eeEEecccccceEEE
Q psy17243          1 MGGMDCLVNVWQMNS--HELQSTMEGHLNTVSCVAISPN--SIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~   74 (392)
                      ||+.|++|+|||+.+  .+.+..+.+|.++|.+++|+|+  +++|++|+.|++|++||+++++  .+..+..|...|.++
T Consensus        26 s~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v  105 (297)
T 2pm7_B           26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSV  105 (297)
T ss_dssp             EEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEE
T ss_pred             EEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEE
Confidence            578999999999974  4778899999999999999863  8899999999999999999874  566778899999999


Q ss_pred             EEecC--CCEEEEEeCCCeEEEEEcCCce-----eeeecccceeEEEEeCC-------------CCEEEEecCCCcEEEE
Q psy17243         75 AVLSD--SRRVVTSDKAGVIAVWVADNAQ-----LLYSALGPSKCLTVTHN-------------MKYIVSGDGDNSLRIW  134 (392)
Q Consensus        75 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~-------------~~~l~~~~~d~~i~~~  134 (392)
                      +|+|+  +++|++++.|+.|++||++++.     .+..+...+.+++|+|+             +++|++++.|+.|++|
T Consensus       106 ~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lw  185 (297)
T 2pm7_B          106 QWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW  185 (297)
T ss_dssp             EECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEE
T ss_pred             EeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEE
Confidence            99997  8899999999999999998753     23345567899999996             5799999999999999


Q ss_pred             eCCCCCCCC-cceeeeccccceEEEEEEcCC---CEEEEeeCCCcEEEEEcCCCe---EEEEE--ecCCCceeEEEEecC
Q psy17243        135 PTSPQTHKD-DERFTVSHSEEITCFTVTWDS---QYLITGSRDMSLKVWQVVGGK---LAQVL--VGHTDHVSCVAVAVT  205 (392)
Q Consensus       135 d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~---~~~~~--~~~~~~v~~~~~~~~  205 (392)
                      |++...... ......+|...|.+++|+|++   ++|++++.|++|++||+++..   ....+  ..|...|.+++|+ +
T Consensus       186 d~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~  264 (297)
T 2pm7_B          186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-L  264 (297)
T ss_dssp             EEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-S
T ss_pred             EEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEEC-C
Confidence            997543221 223445799999999999984   899999999999999998743   12233  4678899999999 6


Q ss_pred             CCcEEEEecCCCeEEEEECCC
Q psy17243        206 NKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       206 ~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      ++.+|++++.|+.|++|+...
T Consensus       265 ~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          265 SGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SSCCEEEEETTSCEEEEEECT
T ss_pred             CCCEEEEEcCCCcEEEEEECC
Confidence            788999999999999999763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.6e-35  Score=266.42  Aligned_cols=252  Identities=14%  Similarity=0.193  Sum_probs=205.9

Q ss_pred             CCccCCeEEEEECCCcc-----------ceeeeccCC------------cCeeEEEecCCC--CeEEEEeCCCeEEEEeC
Q psy17243          1 MGGMDCLVNVWQMNSHE-----------LQSTMEGHL------------NTVSCVAISPNS--IFAVSGSEDNTAKVWGL   55 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~-----------~~~~~~~h~------------~~v~~~~~~~~~--~~l~~~~~dg~v~iwd~   55 (392)
                      +|+.||.|+|||+.+++           ....+.+|.            ..|++++|+|++  .+|++++.|+.|++||+
T Consensus        45 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~  124 (447)
T 3dw8_B           45 TGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKI  124 (447)
T ss_dssp             EEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEE
T ss_pred             EEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEec
Confidence            47889999999998877           577889998            889999999998  78999999999999998


Q ss_pred             CCCcee---------------------------------------EE-ecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         56 TLGSVV---------------------------------------ST-FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        56 ~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      .+++..                                       .. ..+|...|.+++|+|++++|+++ .|+.|++|
T Consensus       125 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iw  203 (447)
T 3dw8_B          125 SERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLW  203 (447)
T ss_dssp             EEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEE
T ss_pred             ccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEE
Confidence            764432                                       12 35799999999999999999998 89999999


Q ss_pred             EcCCc-eeee----------ecccceeEEEEeCCC-CEEEEecCCCcEEEEeCCCCCCCC-cceeeecccc---------
Q psy17243         96 VADNA-QLLY----------SALGPSKCLTVTHNM-KYIVSGDGDNSLRIWPTSPQTHKD-DERFTVSHSE---------  153 (392)
Q Consensus        96 d~~~~-~~~~----------~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~---------  153 (392)
                      |+++. +.+.          .+...+.+++|+|++ ++|++++.||.|++||++...... .......|..         
T Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (447)
T 3dw8_B          204 HLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSE  283 (447)
T ss_dssp             ETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHH
T ss_pred             ECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccc
Confidence            99943 3333          345578999999998 999999999999999998655321 1334444544         


Q ss_pred             ---ceEEEEEEcCCCEEEEeeCCCcEEEEEcCC-CeEEEEEecCCCc---------------eeEEEEecCCCcEEEEec
Q psy17243        154 ---EITCFTVTWDSQYLITGSRDMSLKVWQVVG-GKLAQVLVGHTDH---------------VSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       154 ---~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~  214 (392)
                         .|.+++|+|++++|++++. +.|++||+++ ++++..+.+|...               +..++|+ +++.+|++++
T Consensus       284 ~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s-~~~~~l~s~s  361 (447)
T 3dw8_B          284 IISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN-GSDSVVMTGS  361 (447)
T ss_dssp             HTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC-TTSSEEEEEC
T ss_pred             cCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEEC-CCCCEEEEec
Confidence               8999999999999999998 9999999997 8888888888642               2348999 6788899999


Q ss_pred             CCCeEEEEECCCCceeeeec---------------------------------ccccceeEEEEcCCCeEEEEcC
Q psy17243        215 KDSNLIVWDMETGGEEHFLA---------------------------------GHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       215 ~dg~i~iwd~~~~~~~~~~~---------------------------------~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .||.|++||+.+++.+. +.                                 .+...|..++|+|++.+++.+.
T Consensus       362 ~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~  435 (447)
T 3dw8_B          362 YNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVAT  435 (447)
T ss_dssp             STTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEEC
T ss_pred             cCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEe
Confidence            99999999999887653 22                                 2345688999999999999875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.6e-36  Score=259.09  Aligned_cols=224  Identities=16%  Similarity=0.211  Sum_probs=187.5

Q ss_pred             CCccCCeEEEEECCCcc--ceeeeccCCcCeeEEEecC--CCCeEEEEeCCCeEEEEeCCCC--ceeEEecccccceEEE
Q psy17243          1 MGGMDCLVNVWQMNSHE--LQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVWGLTLG--SVVSTFKSHQSTILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~   74 (392)
                      ||+.|++|+|||+.+++  .+..+.+|...|.+++|+|  ++++|++|+.|++|++||++++  +....+.+|...|.++
T Consensus        30 sgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v  109 (316)
T 3bg1_A           30 TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSV  109 (316)
T ss_dssp             EEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEE
T ss_pred             EEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEE
Confidence            57899999999998764  4678899999999999986  4889999999999999999987  4567788899999999


Q ss_pred             EEecC--CCEEEEEeCCCeEEEEEcCCcee---e---eecccceeEEEEeCC-----------------CCEEEEecCCC
Q psy17243         75 AVLSD--SRRVVTSDKAGVIAVWVADNAQL---L---YSALGPSKCLTVTHN-----------------MKYIVSGDGDN  129 (392)
Q Consensus        75 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~---~---~~~~~~~~~~~~~~~-----------------~~~l~~~~~d~  129 (392)
                      +|+|+  +.+|++++.|+.|++||+..+..   .   ..+...+.++.|+|+                 +++|++++.|+
T Consensus       110 ~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~  189 (316)
T 3bg1_A          110 CWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN  189 (316)
T ss_dssp             EECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS
T ss_pred             EECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC
Confidence            99998  78999999999999999987632   1   223446788999887                 46899999999


Q ss_pred             cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCC----CEEEEeeCCCcEEEEEcCCC---e-EEEEEecCCCceeEEE
Q psy17243        130 SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS----QYLITGSRDMSLKVWQVVGG---K-LAQVLVGHTDHVSCVA  201 (392)
Q Consensus       130 ~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~---~-~~~~~~~~~~~v~~~~  201 (392)
                      .|++||++............+|...|.+++|+|++    ++|++++.|++|++||+.+.   + ....+..|...|.+++
T Consensus       190 ~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~  269 (316)
T 3bg1_A          190 LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVS  269 (316)
T ss_dssp             BCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEE
T ss_pred             eEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEE
Confidence            99999996432222333445789999999999986    89999999999999999762   1 2334567899999999


Q ss_pred             EecCCCcEEEEecCCCeEEEEECC
Q psy17243        202 VAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       202 ~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      |+ +++.+|++++.|+.|++|+..
T Consensus       270 ~s-p~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          270 WS-ITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EC-TTTCCEEEEESSSCEEEEEEC
T ss_pred             Ec-CCCCEEEEEcCCCeEEEEEEC
Confidence            99 678899999999999999976

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.2e-34  Score=251.38  Aligned_cols=295  Identities=16%  Similarity=0.163  Sum_probs=201.5

Q ss_pred             eeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC----ceeEEecccccceEEEEEec--CCCEEEEEeCCCeE
Q psy17243         19 QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG----SVVSTFKSHQSTILAVAVLS--DSRRVVTSDKAGVI   92 (392)
Q Consensus        19 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i   92 (392)
                      ...+.+|.+.|++++|+|++++|++++.||.|++||+.++    +....+.+|...|.+++|+|  ++++|++++.||.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            3456789999999999999999999999999999999876    46677888999999999999  69999999999999


Q ss_pred             EEEEcCCc---------eeee---ecccceeEEEEeCC--CCEEEEecCCCcEEEEeCCCCCCCCccee----------e
Q psy17243         93 AVWVADNA---------QLLY---SALGPSKCLTVTHN--MKYIVSGDGDNSLRIWPTSPQTHKDDERF----------T  148 (392)
Q Consensus        93 ~iwd~~~~---------~~~~---~~~~~~~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----------~  148 (392)
                      ++||+.++         +.+.   .+...+.+++|+|+  ++++++++.|+.|++||++..........          .
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99999876         2233   34567899999999  99999999999999999986654433321          1


Q ss_pred             eccccceEEEEEEcC---CCEEEEeeCCCcEEEEEcCCCeE--EEEEecCCCceeEEEEecCCC---cEEEEecCCCeEE
Q psy17243        149 VSHSEEITCFTVTWD---SQYLITGSRDMSLKVWQVVGGKL--AQVLVGHTDHVSCVAVAVTNK---SLVVSGSKDSNLI  220 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~  220 (392)
                      ..+...+.+++|+|+   +.++++++.++.+.+|+...++.  +..+.+|...|++++|+|.++   .+|++++.||.|+
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence            257788999999997   89999999999998888877764  677788999999999995432   7999999999999


Q ss_pred             EEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecc
Q psy17243        221 VWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVD  300 (392)
Q Consensus       221 iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (392)
                      +||++++........+...+.....+++......+.........    ..+...   ..........+|...+..+..  
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~h~~~v~~~~~--  314 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK----AELQSN---LQVELLSEHDDHNGEVWSVSW--  314 (351)
T ss_dssp             EEEEEECC-------------------------------------------CCS---EEEEEEEEECTTSSCEEEEEE--
T ss_pred             EEeCCCCcCccccCCcccceeccCCCccccccccccccccccee----eeeccc---ccccEEEEEecccccEEEEEE--
Confidence            99998775544443333344444444444443333221111100    000000   000011112244443333332  


Q ss_pred             cccceeEEEeeccccceecceec
Q psy17243        301 ERLKRRFSVSASMEEISKIPIKD  323 (392)
Q Consensus       301 ~~~~~~~~~s~s~d~~~~~~~~~  323 (392)
                       .+++.++++++.|+.+++|...
T Consensus       315 -s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          315 -NLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             -CSSSCCEEEEETTSCEEEEEEC
T ss_pred             -cCCCCEEEEecCCCcEEEEecC
Confidence             3456678888888888888754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9.1e-35  Score=250.77  Aligned_cols=278  Identities=16%  Similarity=0.239  Sum_probs=212.3

Q ss_pred             eeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec--ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeec
Q psy17243         29 VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK--SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA  106 (392)
Q Consensus        29 v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  106 (392)
                      .++|+||+++ +|++| .|++|+|||++++++++.+.  .|...|.+++|+|++++|++|+.|+.|++||+++++.+...
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5789999986 67666 59999999999999887765  57788999999999999999999999999999999988776


Q ss_pred             ccc-eeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe
Q psy17243        107 LGP-SKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK  185 (392)
Q Consensus       107 ~~~-~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  185 (392)
                      .++ ....++++++..+++++.++.+++|+....  .........|...+..+.+.+++++|++++.|+.|++||+++++
T Consensus       106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             cCccceEEEeecCCCEEEEEecCCceEeeecCCC--ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence            553 334566777889999999999999998643  23334456789999999999999999999999999999998764


Q ss_pred             ----EEEEEecCCCceeEEEEecCCCcEE--EEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC--C
Q psy17243        186 ----LAQVLVGHTDHVSCVAVAVTNKSLV--VSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL--P  257 (392)
Q Consensus       186 ----~~~~~~~~~~~v~~~~~~~~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~--~  257 (392)
                          .......+...|.+++++|.+..++  ++++.++.|++||........... +...+..+.|++++..++.+.  .
T Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~  262 (318)
T 4ggc_A          184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFA  262 (318)
T ss_dssp             TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTT
T ss_pred             ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcC
Confidence                3455667888999999997776665  466789999999999887765544 677899999999988777642  1


Q ss_pred             CCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhh
Q psy17243        258 PSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAAL  337 (392)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~l  337 (392)
                      ++.                   ...|....+.....               +.+         +...+...+|+|||++|
T Consensus       263 d~~-------------------i~iwd~~~~~~~~~---------------l~g---------H~~~V~~l~~spdg~~l  299 (318)
T 4ggc_A          263 QNQ-------------------LVIWKYPTMAKVAE---------------LKG---------HTSRVLSLTMSPDGATV  299 (318)
T ss_dssp             TCC-------------------EEEEETTTCCEEEE---------------ECC---------CSSCEEEEEECTTSSCE
T ss_pred             CCE-------------------EEEEECCCCcEEEE---------------EcC---------CCCCEEEEEEcCCCCEE
Confidence            111                   11222211110000               000         00011112689999999


Q ss_pred             hcccChHHHHHHhhCCCC
Q psy17243        338 AQSQHFDQLEALWNKKSP  355 (392)
Q Consensus       338 a~s~~~d~~i~~Wd~~~~  355 (392)
                      | |++.|++|+|||+.+.
T Consensus       300 ~-S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          300 A-SAAADETLRLWRCFEL  316 (318)
T ss_dssp             E-EEETTTEEEEECCSCC
T ss_pred             E-EEecCCeEEEEECCCC
Confidence            8 9999999999998754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-36  Score=266.59  Aligned_cols=222  Identities=13%  Similarity=0.068  Sum_probs=183.6

Q ss_pred             CCccCCeEEEEECCCc--cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc---eeEEecccccceEEEE
Q psy17243          1 MGGMDCLVNVWQMNSH--ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS---VVSTFKSHQSTILAVA   75 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~   75 (392)
                      +|+.||.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++   ....+..|...|.+++
T Consensus        28 ~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~  107 (377)
T 3dwl_C           28 TTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVR  107 (377)
T ss_dssp             CCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEE
T ss_pred             EecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEE
Confidence            5789999999999988  7888999999999999999999999999999999999999887   6777888999999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCcee---e---ee-cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCC-------
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQL---L---YS-ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTH-------  141 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~---~---~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-------  141 (392)
                      |+|++++|++++.|+.|++||+++++.   .   .. +...+.+++|+|++++|++++.|+.|++||+.....       
T Consensus       108 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  187 (377)
T 3dwl_C          108 WSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS  187 (377)
T ss_dssp             CCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC
T ss_pred             ECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc
Confidence            999999999999999999999988752   2   23 566889999999999999999999999999863221       


Q ss_pred             --------CCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE----EEEEecCCCceeEEEEecCCCcE
Q psy17243        142 --------KDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL----AQVLVGHTDHVSCVAVAVTNKSL  209 (392)
Q Consensus       142 --------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~  209 (392)
                              ....... .|...|.+++|+|++++|++++.|+.|++||+++++.    +..+.+|...|.+++|+ +++.+
T Consensus       188 ~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~  265 (377)
T 3dwl_C          188 VWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA-NESAI  265 (377)
T ss_dssp             SSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEE-ETTEE
T ss_pred             ccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEc-CCCCE
Confidence                    1111122 7889999999999999999999999999999999877    77888999999999999 67888


Q ss_pred             EEEecCCCeEEEEECC
Q psy17243        210 VVSGSKDSNLIVWDME  225 (392)
Q Consensus       210 l~~~~~dg~i~iwd~~  225 (392)
                      |++++.++.+ +|+..
T Consensus       266 l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          266 VAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEEESSSSEE-EECCC
T ss_pred             EEEEcCCcEE-EEEeC
Confidence            9988866666 66654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.9e-34  Score=259.74  Aligned_cols=242  Identities=26%  Similarity=0.494  Sum_probs=213.7

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +|+.||.|++||+.+++....+.+|...|.+++|  ++++|++|+.||.|++||+++++.+..+..|...|.+++|+  +
T Consensus       148 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~  223 (435)
T 1p22_A          148 SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--N  223 (435)
T ss_dssp             EEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--T
T ss_pred             EEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--C
Confidence            4789999999999999999999999999999999  77899999999999999999999999999999999999996  4


Q ss_pred             CEEEEEeCCCeEEEEEcCCceee------eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccc
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLL------YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  154 (392)
                      ..+++++.||.|++||+.+++..      ..+...+.++.+  +++++++++.||.|++||+++.   ........|...
T Consensus       224 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~  298 (435)
T 1p22_A          224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC---EFVRTLNGHKRG  298 (435)
T ss_dssp             TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC---CEEEEEECCSSC
T ss_pred             CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC---cEEEEEcCCCCc
Confidence            59999999999999999887543      234456777777  7889999999999999999854   334445578899


Q ss_pred             eEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc------
Q psy17243        155 ITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG------  228 (392)
Q Consensus       155 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------  228 (392)
                      |.++.++  ++++++|+.||.|++||+++++++..+.+|...|.+++|   ++.+|++|+.||.|++||+.+++      
T Consensus       299 v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  373 (435)
T 1p22_A          299 IACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPA  373 (435)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCT
T ss_pred             EEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccc
Confidence            9999884  789999999999999999999999999999999999998   47889999999999999998766      


Q ss_pred             ---eeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        229 ---EEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       229 ---~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                         .+..+.+|...|.+++|  ++..++++..+
T Consensus       374 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D  404 (435)
T 1p22_A          374 GTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD  404 (435)
T ss_dssp             TTTEEEEECCCSSCCCCEEE--CSSCEEECCSS
T ss_pred             cchheeeccCCCCCeEEEEe--CCCEEEEEeCC
Confidence               78889999999999999  66777776644

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-35  Score=263.48  Aligned_cols=295  Identities=13%  Similarity=0.195  Sum_probs=222.0

Q ss_pred             CCccCCeEEEEECCC---cc---ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC---CCceeEEecc-----
Q psy17243          1 MGGMDCLVNVWQMNS---HE---LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT---LGSVVSTFKS-----   66 (392)
Q Consensus         1 tg~~dg~i~vwd~~~---~~---~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~---~~~~~~~~~~-----   66 (392)
                      +|+.||.|++||+.+   +.   ....+ .|...|.+++|+|++++|++++.||.|++||++   +++....+..     
T Consensus        81 s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~  159 (437)
T 3gre_A           81 TGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK  159 (437)
T ss_dssp             EEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence            578999999999976   33   22233 499999999999999999999999999999995   5655544432     


Q ss_pred             -------cccceEEEE--EecCCCEEEEEeCCCeEEEEEcCCceeeeec-----ccceeEEEEeCCCCEEEEecCCCcEE
Q psy17243         67 -------HQSTILAVA--VLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-----LGPSKCLTVTHNMKYIVSGDGDNSLR  132 (392)
Q Consensus        67 -------~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~  132 (392)
                             +...+.++.  +++++++|++++.|+.|++||+++++.+..+     ...+.+++|+|++++|++++.||.|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~  239 (437)
T 3gre_A          160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIID  239 (437)
T ss_dssp             EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence                   344566666  4578999999999999999999998876544     45789999999999999999999999


Q ss_pred             EEeCCCCCCCCccee-eeccccceEEEEEEc----CCCEEEEeeCCCcEEEEEcCCCeEEEEEecC--------------
Q psy17243        133 IWPTSPQTHKDDERF-TVSHSEEITCFTVTW----DSQYLITGSRDMSLKVWQVVGGKLAQVLVGH--------------  193 (392)
Q Consensus       133 ~~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------  193 (392)
                      +||++..   ..... ...|...|.+++|+|    ++.+|++++.||.|++||+++++++..+.+|              
T Consensus       240 iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (437)
T 3gre_A          240 IWDIRFN---VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK  316 (437)
T ss_dssp             EEETTTT---EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCS
T ss_pred             EEEcCCc---cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccc
Confidence            9999843   22222 236778999996664    5779999999999999999999988887644              


Q ss_pred             ------------CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccc---cceeEEEEcCCCeEEEEcCCC
Q psy17243        194 ------------TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL---GCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       194 ------------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~dg~~~~~~~~~  258 (392)
                                  ...|++++|+  ++.+|++++.|+.|++||+.+++....+.+|.   ..+....++++..+++...+.
T Consensus       317 ~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (437)
T 3gre_A          317 GLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKR  394 (437)
T ss_dssp             SGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-
T ss_pred             ccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccc
Confidence                        4557888888  45899999999999999999999998888764   356677788888777765211


Q ss_pred             CCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecce
Q psy17243        259 SRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPI  321 (392)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~  321 (392)
                      ...    ...               .....|...+..+..... .++.++++++.|+.+++|.
T Consensus       395 ~~~----~~~---------------~~~~~h~~~I~~i~~~~~-~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          395 TST----HSV---------------DDSLYHHDIINSISTCEV-DETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -------------------------------CCCEEEEEEEES-SSSEEEEEEETTSCEEEEC
T ss_pred             ccc----ccc---------------CcccccccceeeEeeecc-CCceEEEEEcCCceEEEeC
Confidence            000    000               111134444444333322 2366899999999999994

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.9e-35  Score=255.89  Aligned_cols=299  Identities=16%  Similarity=0.230  Sum_probs=218.9

Q ss_pred             EEEEECCCccceeeeccCCcCeeEEEecCC---CCeEEEEeCCCeEEEEeCCC-Ccee-EEecccccceEEEEEecCCCE
Q psy17243          8 VNVWQMNSHELQSTMEGHLNTVSCVAISPN---SIFAVSGSEDNTAKVWGLTL-GSVV-STFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus         8 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~~~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      ...|+....+.+..+.+|.+.|++++|+|+   +++|++|+.||.|++||+++ +..+ ..+..|...|.+++|+|++++
T Consensus        21 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  100 (368)
T 3mmy_A           21 ATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK  100 (368)
T ss_dssp             --CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             eccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCE
Confidence            334555667788888999999999999998   59999999999999999997 5554 788889999999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCceeee--ecccceeEEEE--eCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEE
Q psy17243         83 VVTSDKAGVIAVWVADNAQLLY--SALGPSKCLTV--THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF  158 (392)
Q Consensus        83 l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~  158 (392)
                      |++++.||.|++||+.+++.+.  .+..++.+++|  ++++++|++++.|+.|++||++.....   ... .....+.++
T Consensus       101 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~-~~~~~~~~~  176 (368)
T 3mmy_A          101 VFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM---MVL-QLPERCYCA  176 (368)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS---EEE-ECSSCEEEE
T ss_pred             EEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE---EEE-ecCCCceEE
Confidence            9999999999999999987654  45568899999  899999999999999999999854332   222 233456666


Q ss_pred             EEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe--cCCCceeEEEEecCC---CcEEEEecCCCeEEEEECCCC---cee
Q psy17243        159 TVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV--GHTDHVSCVAVAVTN---KSLVVSGSKDSNLIVWDMETG---GEE  230 (392)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~---~~~  230 (392)
                      .+.  ...+++++.++.+.+|+++.........  .+...+.++.+.+..   ...+++++.||.|++||++..   +.+
T Consensus       177 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  254 (368)
T 3mmy_A          177 DVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN  254 (368)
T ss_dssp             EEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred             Eec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence            665  4588889999999999998765443322  234455666665322   233899999999999999877   344


Q ss_pred             eeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEe
Q psy17243        231 HFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVS  310 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  310 (392)
                      ..+..|.......          .                               ..+|.                    
T Consensus       255 ~~~~~~~~~~~~~----------~-------------------------------~~~~~--------------------  273 (368)
T 3mmy_A          255 FTFKCHRSNGTNT----------S-------------------------------APQDI--------------------  273 (368)
T ss_dssp             EEEECSEEC--------------C-------------------------------CCEEE--------------------
T ss_pred             eeeeeeecccccc----------c-------------------------------ccccc--------------------
Confidence            5555554310000          0                               00000                    


Q ss_pred             eccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCcccc
Q psy17243        311 ASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDE  389 (392)
Q Consensus       311 ~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d  389 (392)
                                  ......+|+|++++|+ +++.||.|++||+.++.....+   ..+...+..++|+|||++||+++.|
T Consensus       274 ------------~~v~~~~~sp~~~~l~-s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          274 ------------YAVNGIAFHPVHGTLA-TVGSDGRFSFWDKDARTKLKTS---EQLDQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             ------------CCEEEEEECTTTCCEE-EEETTSCEEEEETTTTEEEEEC---CCCSSCEEEEEECTTSSCEEEEECC
T ss_pred             ------------cceEEEEEecCCCEEE-EEccCCeEEEEECCCCcEEEEe---cCCCCCceEEEECCCCCeEEEEecc
Confidence                        0000113677887777 7888999999999876653221   1234567779999999999987765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-34  Score=257.71  Aligned_cols=272  Identities=13%  Similarity=0.137  Sum_probs=210.2

Q ss_pred             CeeEEEecCCCCe-EEEEeCCCeEEEEeCCCC----ceeEEecccccceEEEEEec-CCCEEEEEeCCCeEEEEEcCCce
Q psy17243         28 TVSCVAISPNSIF-AVSGSEDNTAKVWGLTLG----SVVSTFKSHQSTILAVAVLS-DSRRVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        28 ~v~~~~~~~~~~~-l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~  101 (392)
                      ....++++|+... +++++.||.|+||++...    ..+..+.+|...|.+++|+| ++++|++++.||.|++||+.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            4456888887654 445788999999999664    23456778999999999999 89999999999999999998872


Q ss_pred             -------e---eeecccceeEEEEeCCC-CEEEEecCCCcEEEEeCCCCCCCCcceee--eccccceEEEEEEcCCCEEE
Q psy17243        102 -------L---LYSALGPSKCLTVTHNM-KYIVSGDGDNSLRIWPTSPQTHKDDERFT--VSHSEEITCFTVTWDSQYLI  168 (392)
Q Consensus       102 -------~---~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~  168 (392)
                             .   +..+...+.+++|+|++ ++|++++.|+.|++||+++.   ......  ..|...|.+++|+|++++|+
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~  192 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---AAVLTLGPDVHPDTIYSVDWSRDGALIC  192 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT---EEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC---CccEEEecCCCCCceEEEEECCCCCEEE
Confidence                   2   23455688999999998 69999999999999999843   223333  46889999999999999999


Q ss_pred             EeeCCCcEEEEEcCCCeEEEEE-ecCCCc-eeEEEEecCCCcEEEEe---cCCCeEEEEECCCCce-eeeec-cccccee
Q psy17243        169 TGSRDMSLKVWQVVGGKLAQVL-VGHTDH-VSCVAVAVTNKSLVVSG---SKDSNLIVWDMETGGE-EHFLA-GHLGCVT  241 (392)
Q Consensus       169 ~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~-~~~~~v~  241 (392)
                      +++.|+.|++||+++++.+..+ ..|... +.++.|+ +++.+|++|   +.|+.|++||+++++. +.... .|...+.
T Consensus       193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  271 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV-SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL  271 (402)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC-STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred             EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc-CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence            9999999999999999999888 688776 8999999 678899998   7999999999987654 22221 2334444


Q ss_pred             EEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecce
Q psy17243        242 CVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPI  321 (392)
Q Consensus       242 ~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~  321 (392)
                      +++|+                                                                           
T Consensus       272 ~~~~s---------------------------------------------------------------------------  276 (402)
T 2aq5_A          272 LPFFD---------------------------------------------------------------------------  276 (402)
T ss_dssp             EEEEE---------------------------------------------------------------------------
T ss_pred             EEEEc---------------------------------------------------------------------------
Confidence            44444                                                                           


Q ss_pred             eccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCccc
Q psy17243        322 KDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVD  388 (392)
Q Consensus       322 ~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~  388 (392)
                                |++++|+++++.|+.|++||+.++...........+...+..++|+||++++++++.
T Consensus       277 ----------~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~  333 (402)
T 2aq5_A          277 ----------PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCE  333 (402)
T ss_dssp             ----------TTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTE
T ss_pred             ----------CCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecce
Confidence                      444444445566778888888776642222233334466778999999999987654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4e-34  Score=249.69  Aligned_cols=231  Identities=15%  Similarity=0.219  Sum_probs=198.3

Q ss_pred             CCccCCeEEEEECCCc----cceeeeccCCcCeeEEEecC--CCCeEEEEeCCCeEEEEeCCCC---------ceeEEec
Q psy17243          1 MGGMDCLVNVWQMNSH----ELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVWGLTLG---------SVVSTFK   65 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~---------~~~~~~~   65 (392)
                      +|+.||.|++||+.++    +....+.+|...|++++|+|  ++++|++++.||.|++||++++         +.+..+.
T Consensus        28 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  107 (351)
T 3f3f_A           28 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN  107 (351)
T ss_dssp             EEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC
T ss_pred             EeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec
Confidence            4788999999999876    46677789999999999999  6899999999999999999887         5678888


Q ss_pred             ccccceEEEEEecC--CCEEEEEeCCCeEEEEEcCCceeeee----------------cccceeEEEEeCC---CCEEEE
Q psy17243         66 SHQSTILAVAVLSD--SRRVVTSDKAGVIAVWVADNAQLLYS----------------ALGPSKCLTVTHN---MKYIVS  124 (392)
Q Consensus        66 ~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~----------------~~~~~~~~~~~~~---~~~l~~  124 (392)
                      .|...|.+++|+|+  +++|++++.|+.|++||+.+++.+..                ....+.++.|+|+   +..+++
T Consensus       108 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~  187 (351)
T 3f3f_A          108 DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV  187 (351)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEE
T ss_pred             ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEE
Confidence            99999999999999  99999999999999999988765432                2346789999997   999999


Q ss_pred             ecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCC----CEEEEeeCCCcEEEEEcCCC----------------
Q psy17243        125 GDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS----QYLITGSRDMSLKVWQVVGG----------------  184 (392)
Q Consensus       125 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~----------------  184 (392)
                      ++.++.+.+|+...... ........|...|.+++|+|++    ++|++++.||.|++||++++                
T Consensus       188 ~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  266 (351)
T 3f3f_A          188 SALEQAIIYQRGKDGKL-HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMF  266 (351)
T ss_dssp             EETTEEEEEEECTTSCE-EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------
T ss_pred             ecCCCcEEEEccCCCce-eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceecc
Confidence            99999997777653322 2233445789999999999998    89999999999999999875                


Q ss_pred             ------------------------------eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee
Q psy17243        185 ------------------------------KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       185 ------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                                                    +.+..+.+|...|++++|+ +++.+|++++.||.|++||+.+++....+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN-LTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ------------------------CCSEEEEEEEEECTTSSCEEEEEEC-SSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             CCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc-CCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                                          5677788899999999999 67889999999999999999988765544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.1e-34  Score=251.75  Aligned_cols=247  Identities=12%  Similarity=0.122  Sum_probs=191.9

Q ss_pred             CCeEEEEECCCccce----------eeeccCCcCeeEEEecCCCCeEEEE-----------eCCCeEEEEeCCCCceeE-
Q psy17243          5 DCLVNVWQMNSHELQ----------STMEGHLNTVSCVAISPNSIFAVSG-----------SEDNTAKVWGLTLGSVVS-   62 (392)
Q Consensus         5 dg~i~vwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~l~~~-----------~~dg~v~iwd~~~~~~~~-   62 (392)
                      ++.|++|++......          ..+.+|...|.++++++  +.+++|           +.|+.+++|++....... 
T Consensus        42 ~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~  119 (365)
T 4h5i_A           42 PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE  119 (365)
T ss_dssp             CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred             CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence            457999998654321          24567888999887754  355554           457889999987653221 


Q ss_pred             ---Ee-----cccccceEEEEEecCCCEEEEEe--CCCeEEEEEcCCceeeeec--ccceeEEEEeCCCCEEEEecCCCc
Q psy17243         63 ---TF-----KSHQSTILAVAVLSDSRRVVTSD--KAGVIAVWVADNAQLLYSA--LGPSKCLTVTHNMKYIVSGDGDNS  130 (392)
Q Consensus        63 ---~~-----~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~  130 (392)
                         ..     ..+...+.+++|+|||+++++++  .|++|++||+++++.+..+  ...+.+++|+|+++++++++.++ 
T Consensus       120 ~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~-  198 (365)
T 4h5i_A          120 FLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSS-  198 (365)
T ss_dssp             EEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSC-
T ss_pred             EeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecccee-
Confidence               11     12345689999999999987654  6899999999999887654  45789999999999999998655 


Q ss_pred             EEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCC----cEEEEEcCCCeE----EEEEecCCCceeEEEE
Q psy17243        131 LRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM----SLKVWQVVGGKL----AQVLVGHTDHVSCVAV  202 (392)
Q Consensus       131 i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~v~~~~~  202 (392)
                      +.+|+..++... .......|...|.+++|+|+++++++++.++    .+++|++.....    ...+.+|...|++++|
T Consensus       199 ~~~~~~~~~~~~-~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~  277 (365)
T 4h5i_A          199 LEVISTVTGSCI-ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV  277 (365)
T ss_dssp             EEEEETTTCCEE-EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE
T ss_pred             EEEEEeccCcce-eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE
Confidence            556655433221 1122346788899999999999999998887    688999877653    3557789999999999


Q ss_pred             ecCCCcEEEEecCCCeEEEEECCCCceeeee-cccccceeEEEEcCCCeEEEEcC
Q psy17243        203 AVTNKSLVVSGSKDSNLIVWDMETGGEEHFL-AGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       203 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      + +++.+|++|+.|+.|+|||+++++++..+ .+|...|++++|+|||++++++.
T Consensus       278 S-pdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S  331 (365)
T 4h5i_A          278 D-MKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS  331 (365)
T ss_dssp             C-TTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred             C-CCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence            9 78899999999999999999999999875 78999999999999999888753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6.6e-34  Score=255.61  Aligned_cols=239  Identities=16%  Similarity=0.227  Sum_probs=206.5

Q ss_pred             eeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCC----------CceeEEecccccceEEEEEecCCC-EEEEEe
Q psy17243         20 STMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTL----------GSVVSTFKSHQSTILAVAVLSDSR-RVVTSD   87 (392)
Q Consensus        20 ~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~   87 (392)
                      .....|.+.|++++|+|+ +.+|++++.||.|++||+.+          .+.+..+.+|...|.+++|+|++. +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            344569999999999997 67999999999999999986          677888889999999999999998 999999


Q ss_pred             CCCeEEEEEcCCce----------eeeecccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         88 KAGVIAVWVADNAQ----------LLYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        88 ~d~~i~iwd~~~~~----------~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      .||.|++||+..+.          ....+...+.+++|+| ++.+|++++.|+.|++||++.............|...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            99999999998732          1224556789999999 788999999999999999986643344445558899999


Q ss_pred             EEEEEcCCC-EEEEeeCCCcEEEEEcCC-CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC--------
Q psy17243        157 CFTVTWDSQ-YLITGSRDMSLKVWQVVG-GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET--------  226 (392)
Q Consensus       157 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------  226 (392)
                      +++|+|++. +|++|+.||.|++||+++ .+++..+..|...|++++|+|.+..+|++++.|+.|+|||+..        
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  361 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  361 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence            999999987 788999999999999998 5678889999999999999976667899999999999999987        


Q ss_pred             ------CceeeeecccccceeEEEEcCCCe-EEEEcCCC
Q psy17243        227 ------GGEEHFLAGHLGCVTCVKLAGDGT-VAMSDLPP  258 (392)
Q Consensus       227 ------~~~~~~~~~~~~~v~~~~~~~dg~-~~~~~~~~  258 (392)
                            .+.+..+.+|...|.+++|+|++. +++++..+
T Consensus       362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d  400 (430)
T 2xyi_A          362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED  400 (430)
T ss_dssp             HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC
Confidence                  356777888999999999999999 77776544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.3e-34  Score=253.42  Aligned_cols=235  Identities=13%  Similarity=0.107  Sum_probs=175.6

Q ss_pred             EEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEE-EEEeC
Q psy17243         10 VWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV-VTSDK   88 (392)
Q Consensus        10 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~   88 (392)
                      +|++.+.+.+..+..|...|++++|+|++++|++|+.++ +++|++++++.......  ..+..+.+.++++.+ ++++.
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV   79 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence            567777788888889999999999999999999998775 78999998776655442  257788888888877 56777


Q ss_pred             CCeEEEEEcCCceeeeec--ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCC-CCCCcceeeeccccceEEEEEEcCCC
Q psy17243         89 AGVIAVWVADNAQLLYSA--LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ-THKDDERFTVSHSEEITCFTVTWDSQ  165 (392)
Q Consensus        89 d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~  165 (392)
                      ++.|++||+.+++.+..+  ..++.++.++++.  ++++ .++.|++||+... ........      +...+++++  .
T Consensus        80 d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~------~~~~~~~s~--~  148 (355)
T 3vu4_A           80 KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR------FGGVCEFSN--G  148 (355)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE------EEEEEEEET--T
T ss_pred             ccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc------CCceEEEEc--c
Confidence            899999999999877644  4577888887764  4433 4789999999865 22222211      444566776  5


Q ss_pred             EEEE--eeCCCcEEEEEcCCCe---------------E-EEEEecCCCceeEEEEecCCCcEEEEecCCCe-EEEEECCC
Q psy17243        166 YLIT--GSRDMSLKVWQVVGGK---------------L-AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSN-LIVWDMET  226 (392)
Q Consensus       166 ~l~~--~~~dg~i~i~d~~~~~---------------~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~  226 (392)
                      ++++  |+.+|.|++||+++++               + +..+.+|...|++++|+ +++.+|++++.|++ |++||+++
T Consensus       149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s-~~g~~l~s~s~d~~~v~iwd~~~  227 (355)
T 3vu4_A          149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN-RKSDMVATCSQDGTIIRVFKTED  227 (355)
T ss_dssp             EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC-TTSSEEEEEETTCSEEEEEETTT
T ss_pred             EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC-CCCCEEEEEeCCCCEEEEEECCC
Confidence            6666  6889999999998865               2 67889999999999999 68899999999998 99999999


Q ss_pred             Cceeeeec-c-cccceeEEEEcCCCeEEEEcCCCC
Q psy17243        227 GGEEHFLA-G-HLGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       227 ~~~~~~~~-~-~~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      ++++..+. + |...|.+++|+|||++++++..++
T Consensus       228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW  262 (355)
T ss_dssp             CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred             CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence            99999998 5 999999999999999999987553

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-33  Score=248.31  Aligned_cols=223  Identities=9%  Similarity=0.069  Sum_probs=181.7

Q ss_pred             CccCCeEEEEECCCccceee---------eccCCcCeeEEEecCCCCeEEE--EeCCCeEEEEeCCCCceeEEecccccc
Q psy17243          2 GGMDCLVNVWQMNSHELQST---------MEGHLNTVSCVAISPNSIFAVS--GSEDNTAKVWGLTLGSVVSTFKSHQST   70 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~---------~~~h~~~v~~~~~~~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~   70 (392)
                      |+.|+.+++|++.+.+....         ...+...+.+++|+|||+++++  ++.|++|+|||+++++++..+. |...
T Consensus       100 ~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~  178 (365)
T 4h5i_A          100 GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGE  178 (365)
T ss_dssp             TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSC
T ss_pred             ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCc
Confidence            56789999999865432211         1234566899999999998765  4578999999999999998887 7888


Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee-----cccceeEEEEeCCCCEEEEecCCC----cEEEEeCCCCCC
Q psy17243         71 ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS-----ALGPSKCLTVTHNMKYIVSGDGDN----SLRIWPTSPQTH  141 (392)
Q Consensus        71 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~  141 (392)
                      |.+++|+|+++++++++.++ +.+|+..+++.+..     +...+.+++|+|+++++++++.++    .+++|++.....
T Consensus       179 V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~  257 (365)
T 4h5i_A          179 VKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT  257 (365)
T ss_dssp             CCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred             eEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence            99999999999999998554 66666666654432     334688999999999999998887    578888764332


Q ss_pred             CC-cceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEE-ecCCCceeEEEEecCCCcEEEEecCCCeE
Q psy17243        142 KD-DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL-VGHTDHVSCVAVAVTNKSLVVSGSKDSNL  219 (392)
Q Consensus       142 ~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  219 (392)
                      .. .......|...|++++|+|++++|++|+.|++|+|||+++++++..+ .+|...|++++|+ +++.+|++|+.|++|
T Consensus       258 ~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS-pdg~~laS~S~D~tv  336 (365)
T 4h5i_A          258 SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS-PDSTYVASVSAANTI  336 (365)
T ss_dssp             EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC-TTSCEEEEEETTSEE
T ss_pred             cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEEC-CCCCEEEEEeCCCeE
Confidence            21 12234578889999999999999999999999999999999999875 7899999999999 789999999999999


Q ss_pred             EEEECCCC
Q psy17243        220 IVWDMETG  227 (392)
Q Consensus       220 ~iwd~~~~  227 (392)
                      +|||+...
T Consensus       337 rvw~ip~~  344 (365)
T 4h5i_A          337 HIIKLPLN  344 (365)
T ss_dssp             EEEECCTT
T ss_pred             EEEEcCCC
Confidence            99999643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.2e-32  Score=244.60  Aligned_cols=247  Identities=15%  Similarity=0.134  Sum_probs=203.7

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeE-EEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      +++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|+
T Consensus         7 s~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spd   84 (391)
T 1l0q_A            7 ANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPD   84 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTT
T ss_pred             EcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCC
Confidence            46789999999999999999988665 58999999999876 677789999999999999998888554 8999999999


Q ss_pred             CCEEEEEe-CCCeEEEEEcCCceeeeecc--cceeEEEEeCCCCEE-EEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         80 SRRVVTSD-KAGVIAVWVADNAQLLYSAL--GPSKCLTVTHNMKYI-VSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        80 ~~~l~~~~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      +++|++++ .++.|++||+.+++.+....  ..+.+++|+|+++.+ ++++.++.|++||+.+.+.   .... .....+
T Consensus        85 g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~-~~~~~~  160 (391)
T 1l0q_A           85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV---INTV-SVGRSP  160 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---EEEE-ECCSSE
T ss_pred             CCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE---EEEE-ecCCCc
Confidence            99886554 67999999999998765443  467899999999977 6788899999999974432   2222 334567


Q ss_pred             EEEEEEcCCCEE-EEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEec---CCCeEEEEECCCCceee
Q psy17243        156 TCFTVTWDSQYL-ITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS---KDSNLIVWDMETGGEEH  231 (392)
Q Consensus       156 ~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~  231 (392)
                      .+++|+|++++| ++++.++.|++||+++++.+..+. +...+.+++|+ +++.++++++   .++.|++||+.+++.+.
T Consensus       161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~-~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~  238 (391)
T 1l0q_A          161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVN-PEGTKAYVTNVDKYFNTVSMIDTGTNKITA  238 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEEC-TTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEEC-CCCCEEEEEecCcCCCcEEEEECCCCeEEE
Confidence            999999999887 567788999999999998887776 56688999999 5666666666   68999999999999888


Q ss_pred             eecccccceeEEEEcCCCeEE-EEcC
Q psy17243        232 FLAGHLGCVTCVKLAGDGTVA-MSDL  256 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~dg~~~-~~~~  256 (392)
                      .+..+. .+.+++|+|||+.+ +++.
T Consensus       239 ~~~~~~-~~~~~~~s~dg~~l~~s~~  263 (391)
T 1l0q_A          239 RIPVGP-DPAGIAVTPDGKKVYVALS  263 (391)
T ss_dssp             EEECCS-SEEEEEECTTSSEEEEEET
T ss_pred             EEecCC-CccEEEEccCCCEEEEEcC
Confidence            887654 57899999999877 4543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.5e-33  Score=245.78  Aligned_cols=232  Identities=10%  Similarity=0.054  Sum_probs=197.1

Q ss_pred             eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc---eeEEecccccceEEEEEecCCC-EEEEEeCCCeEEEE
Q psy17243         20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS---VVSTFKSHQSTILAVAVLSDSR-RVVTSDKAGVIAVW   95 (392)
Q Consensus        20 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw   95 (392)
                      ....+|.+.|++++|+|++++|++++.||.|++|++.+++   ....+..|...|.+++|+|+++ +|++++.||.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3345799999999999999999999999999999998887   3455557999999999999999 99999999999999


Q ss_pred             Ec-CCceee--ee--cccceeEEEEeCCCCEEEEecCCCcEEEEeCCC---------CCCCCcceeeeccccceEEEEEE
Q psy17243         96 VA-DNAQLL--YS--ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSP---------QTHKDDERFTVSHSEEITCFTVT  161 (392)
Q Consensus        96 d~-~~~~~~--~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~v~~~~~~  161 (392)
                      |+ .+++..  ..  +...+.+++|+| ++++++++.|+.|++||++.         .....   . ..+...+.+++|+
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~-~~~~~~v~~~~~~  159 (342)
T 1yfq_A           85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN---N-TKVKNKIFTMDTN  159 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS---S-SSSCCCEEEEEEC
T ss_pred             EeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee---E-EeeCCceEEEEec
Confidence            99 877553  34  566889999999 99999999999999999874         22222   1 2378899999999


Q ss_pred             cCCCEEEEeeCCCcEEEEEcCC-Ce--EEEEEecCCCceeEEEEecC-CCcEEEEecCCCeEEEEECCCC------ceee
Q psy17243        162 WDSQYLITGSRDMSLKVWQVVG-GK--LAQVLVGHTDHVSCVAVAVT-NKSLVVSGSKDSNLIVWDMETG------GEEH  231 (392)
Q Consensus       162 ~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~  231 (392)
                      |++  +++++.++.|++||+++ +.  .......|...+.+++|+ + ++.++++++.||.|++|+++..      +...
T Consensus       160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  236 (342)
T 1yfq_A          160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL-PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC-SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEEC-CCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence            877  99999999999999988 54  334455688899999999 5 7889999999999999999887      7777


Q ss_pred             eeccccc---------ceeEEEEcCCCeEEEEcCCCC
Q psy17243        232 FLAGHLG---------CVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       232 ~~~~~~~---------~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      .+..|..         .|.+++|+|++++++++..++
T Consensus       237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  273 (342)
T 1yfq_A          237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             eeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence            8887765         999999999999999876543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-33  Score=250.51  Aligned_cols=227  Identities=13%  Similarity=0.130  Sum_probs=191.2

Q ss_pred             CCcCeeEEEecCCCCeE-EEEeCCCeEEEEeCC--CCceeEEec--ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q psy17243         25 HLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLT--LGSVVSTFK--SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADN   99 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l-~~~~~dg~v~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   99 (392)
                      |...|.+++|+|++++| ++++.||.|++||+.  +++.+..+.  .|...|.+++|+|++++|++++.+|.+++|++.+
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~  180 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS  180 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC
Confidence            33479999999999996 899999999999999  888888876  5678899999999999999999999999999987


Q ss_pred             ceee-------eecccceeEEEEeCC---CCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEE
Q psy17243        100 AQLL-------YSALGPSKCLTVTHN---MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLIT  169 (392)
Q Consensus       100 ~~~~-------~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  169 (392)
                      ++..       ..+...+.+++|+|+   +++|++++.|+.|++||+.....  ......+|...|.+++|+ ++++|++
T Consensus       181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~s-d~~~l~s  257 (450)
T 2vdu_B          181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI--VDKWLFGHKHFVSSICCG-KDYLLLS  257 (450)
T ss_dssp             CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC--EEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred             cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce--eeeeecCCCCceEEEEEC-CCCEEEE
Confidence            7643       345568899999999   99999999999999999974432  122244788999999999 9999999


Q ss_pred             eeCCCcEEEEEcCCCeEEEEEec-------------------------CCCceeEEEEecCCCcEEEEec-CCCeEEEEE
Q psy17243        170 GSRDMSLKVWQVVGGKLAQVLVG-------------------------HTDHVSCVAVAVTNKSLVVSGS-KDSNLIVWD  223 (392)
Q Consensus       170 ~~~dg~i~i~d~~~~~~~~~~~~-------------------------~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd  223 (392)
                      ++.|+.|++||+++++++..+..                         ....|..++|+ +++.+|++++ .|+.|++|+
T Consensus       258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS-KNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC-SSSSEEEEEETTCSEEEEEE
T ss_pred             EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe-CCCCEEEEEECCCCeEEEEE
Confidence            99999999999999998888763                         23568899999 5677777777 899999999


Q ss_pred             C--CCC---ceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        224 M--ETG---GEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       224 ~--~~~---~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +  .++   +.+..+..| ..|.+++|+|++.+++.+.
T Consensus       337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          337 MSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             ECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred             eccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence            9  555   566677777 8899999999766655543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=255.62  Aligned_cols=208  Identities=16%  Similarity=0.227  Sum_probs=176.9

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc---eeEEecc------------------------------------
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS---VVSTFKS------------------------------------   66 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~------------------------------------   66 (392)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999966665 57899999999998   6555543                                    


Q ss_pred             ------------------cccceEEEEEecCCCEE-EEEeCCCeEEEEEcC--Cceeeeec-----ccceeEEEEeCCCC
Q psy17243         67 ------------------HQSTILAVAVLSDSRRV-VTSDKAGVIAVWVAD--NAQLLYSA-----LGPSKCLTVTHNMK  120 (392)
Q Consensus        67 ------------------~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~-----~~~~~~~~~~~~~~  120 (392)
                                        |.+.|.+++|+|++++| ++++.||.|++||+.  +++.+..+     ...+.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                              22369999999999996 889999999999999  77665543     35788999999999


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCC-cceeeeccccceEEEEEEcC---CCEEEEeeCCCcEEEEEcCCCeEEEE-EecCCC
Q psy17243        121 YIVSGDGDNSLRIWPTSPQTHKD-DERFTVSHSEEITCFTVTWD---SQYLITGSRDMSLKVWQVVGGKLAQV-LVGHTD  195 (392)
Q Consensus       121 ~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~  195 (392)
                      +|++++.++.|++|++....... .......|...|.+++|+|+   +++|++++.|+.|++||+++++.+.. +.+|..
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            99999999999999998655443 33344578899999999999   99999999999999999999988877 558999


Q ss_pred             ceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccc
Q psy17243        196 HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH  236 (392)
Q Consensus       196 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  236 (392)
                      .|.+++|+  ++.+|++++.|+.|++||+.+++++..+..+
T Consensus       243 ~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  281 (450)
T 2vdu_B          243 FVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYN  281 (450)
T ss_dssp             CEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECH
T ss_pred             ceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecch
Confidence            99999999  7889999999999999999999988877643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-33  Score=245.87  Aligned_cols=228  Identities=16%  Similarity=0.232  Sum_probs=195.4

Q ss_pred             CCccCCeEEEEECC--CccceeeeccCCcCeeEEEecCC--CCeEEEEeCCCeEEEEeCCCCc--eeEEecccccceEEE
Q psy17243          1 MGGMDCLVNVWQMN--SHELQSTMEGHLNTVSCVAISPN--SIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~   74 (392)
                      +|+.||.|++||+.  +++.+..+.+|...|++++|+++  +++|++++.||.|++||+++++  .+..+..|...|.++
T Consensus        28 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~  107 (379)
T 3jrp_A           28 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV  107 (379)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred             EEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEE
Confidence            46789999999998  67788889999999999999987  8999999999999999999987  777888899999999


Q ss_pred             EEecC--CCEEEEEeCCCeEEEEEcCCcee-----eeecccceeEEEEeC-------------CCCEEEEecCCCcEEEE
Q psy17243         75 AVLSD--SRRVVTSDKAGVIAVWVADNAQL-----LYSALGPSKCLTVTH-------------NMKYIVSGDGDNSLRIW  134 (392)
Q Consensus        75 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~-------------~~~~l~~~~~d~~i~~~  134 (392)
                      +|+|+  +++|++++.|+.|++||+.+...     +..+...+.+++|+|             ++.++++++.|+.|++|
T Consensus       108 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  187 (379)
T 3jrp_A          108 QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW  187 (379)
T ss_dssp             EECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEE
T ss_pred             EeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEE
Confidence            99999  99999999999999999988732     234556889999999             69999999999999999


Q ss_pred             eCCCCCCCC-cceeeeccccceEEEEEEcC---CCEEEEeeCCCcEEEEEcCCCe---EEEEE--ecCCCceeEEEEecC
Q psy17243        135 PTSPQTHKD-DERFTVSHSEEITCFTVTWD---SQYLITGSRDMSLKVWQVVGGK---LAQVL--VGHTDHVSCVAVAVT  205 (392)
Q Consensus       135 d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~---~~~~~--~~~~~~v~~~~~~~~  205 (392)
                      |++...... .......|...|.+++|+|+   +++|++++.||.|++||+++++   ....+  ..|...|++++|+ +
T Consensus       188 d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~  266 (379)
T 3jrp_A          188 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-L  266 (379)
T ss_dssp             EEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-S
T ss_pred             EecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc-C
Confidence            997544322 22344568899999999999   8999999999999999998864   22222  3488899999999 6


Q ss_pred             CCcEEEEecCCCeEEEEECCCCce
Q psy17243        206 NKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       206 ~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      ++.+|++++.||.|++|++..+..
T Consensus       267 ~g~~l~~~~~dg~i~iw~~~~~~~  290 (379)
T 3jrp_A          267 SGNVLALSGGDNKVTLWKENLEGK  290 (379)
T ss_dssp             SSCCEEEEESSSSEEEEEEEETTE
T ss_pred             CCCEEEEecCCCcEEEEeCCCCCc
Confidence            788899999999999999886543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=8.1e-33  Score=249.10  Aligned_cols=304  Identities=12%  Similarity=0.056  Sum_probs=233.8

Q ss_pred             ccCC--eEEEEECCCc--cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeE-----EecccccceEE
Q psy17243          3 GMDC--LVNVWQMNSH--ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS-----TFKSHQSTILA   73 (392)
Q Consensus         3 ~~dg--~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-----~~~~~~~~v~~   73 (392)
                      +.++  .|.++|..++  +.+..+..+ ..+.+++|+|++.++++++.++.|++||+.+++...     .+.+|...|.+
T Consensus        96 ~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~  174 (433)
T 3bws_A           96 PEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVET  174 (433)
T ss_dssp             GGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEE
T ss_pred             cCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeE
Confidence            4455  4444444334  555666644 456699999988888888889999999999998887     44578889999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEE-ecCCCcEEEEeCCCCCCCCcceeee
Q psy17243         74 VAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVS-GDGDNSLRIWPTSPQTHKDDERFTV  149 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~  149 (392)
                      ++|+++++.+++++.++.|++||+++++.+..+   ...+.+++++|+++.+++ ++.++.|++||+++...   .. ..
T Consensus       175 ~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~---~~-~~  250 (433)
T 3bws_A          175 ISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE---IR-KT  250 (433)
T ss_dssp             EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE---EE-EC
T ss_pred             EEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE---EE-Ee
Confidence            999999999999999999999999998776654   346789999999998855 55799999999974422   22 22


Q ss_pred             ccccceEEEEEEcCCCEEEEee--------CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEE
Q psy17243        150 SHSEEITCFTVTWDSQYLITGS--------RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV  221 (392)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  221 (392)
                      .....+.+++|+|++++|++++        .|+.|++||+++++.+..+. |...+.+++|+|.+..++++++.|+.|++
T Consensus       251 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v  329 (433)
T 3bws_A          251 DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEV  329 (433)
T ss_dssp             CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred             cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence            3445689999999999999888        58899999999998777663 56688999999655567788899999999


Q ss_pred             EECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeeccc
Q psy17243        222 WDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDE  301 (392)
Q Consensus       222 wd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (392)
                      ||+.+++.+..+. +...+.+++|+|+|++++.+.....                                         
T Consensus       330 ~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~-----------------------------------------  367 (433)
T 3bws_A          330 YDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPN-----------------------------------------  367 (433)
T ss_dssp             EETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCC-----------------------------------------
T ss_pred             EECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCC-----------------------------------------
Confidence            9999998887776 6778999999999997776531100                                         


Q ss_pred             ccceeEEEeeccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCcc
Q psy17243        302 RLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTD  381 (392)
Q Consensus       302 ~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~  381 (392)
                                                   .++..+++ +++.||.|++||+.+++....    +.....+..++|+|||+
T Consensus       368 -----------------------------~~~~~~~~-~g~~dg~v~~~d~~~~~~~~~----~~~~~~~~~~~~s~dg~  413 (433)
T 3bws_A          368 -----------------------------HPTEGYLK-KGLVLGKVYVIDTTTDTVKEF----WEAGNQPTGLDVSPDNR  413 (433)
T ss_dssp             -----------------------------CTTTCTTS-CCSSCCEEEEEETTTTEEEEE----EECSSSEEEEEECTTSC
T ss_pred             -----------------------------cccccccc-ccccceEEEEEECCCCcEEEE----ecCCCCCceEEEcCCCC
Confidence                                         01233445 888999999999987665222    22344566799999999


Q ss_pred             CCCCccc
Q psy17243        382 ELSSPVD  388 (392)
Q Consensus       382 ~l~~~~~  388 (392)
                      +|++++.
T Consensus       414 ~l~~~~~  420 (433)
T 3bws_A          414 YLVISDF  420 (433)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9986653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-33  Score=241.89  Aligned_cols=243  Identities=10%  Similarity=0.061  Sum_probs=188.6

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC---------CCceeEEec-ccccc
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT---------LGSVVSTFK-SHQST   70 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~---------~~~~~~~~~-~~~~~   70 (392)
                      +|+.||.|++||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +++.+..+. .|..+
T Consensus        53 sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (343)
T 3lrv_A           53 CRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANE  127 (343)
T ss_dssp             EEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSC
T ss_pred             EECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCC
Confidence            58899999999999999888887  577889999998   9999999999999665         555454444 56788


Q ss_pred             eEEEEEec--CCCEEEEEeCCCeEEEEEcCCceeeeec----ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         71 ILAVAVLS--DSRRVVTSDKAGVIAVWVADNAQLLYSA----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        71 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      |.+++|+|  +++++++++.|+.|++||+++++.+...    ...+.+++|+|++.+|++|+.||.|++||+++..... 
T Consensus       128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~-  206 (343)
T 3lrv_A          128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS-  206 (343)
T ss_dssp             EEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC-
T ss_pred             EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc-
Confidence            99999999  9999999999999999999998876433    3368899999999999999999999999998654321 


Q ss_pred             ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec---CCCcee--EEEEecCCCcEEEEecC-CCe
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG---HTDHVS--CVAVAVTNKSLVVSGSK-DSN  218 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~~l~~~~~-dg~  218 (392)
                      ..+...|..+|.+++|+|++.+|++++ ++.|++||+++++.+..+..   |...+.  +++|+ +++.+|++++. |+.
T Consensus       207 ~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~l~~~s~~d~~  284 (343)
T 3lrv_A          207 SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID-DSGKNMIAYSNESNS  284 (343)
T ss_dssp             EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC-TTSSEEEEEETTTTE
T ss_pred             cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEEC-CCCCEEEEecCCCCc
Confidence            122223899999999999999999999 55999999998876554433   334444  69999 67888888887 999


Q ss_pred             EEEEECCCCceeeeecccccceeEEEEcC---CCeEEEEc
Q psy17243        219 LIVWDMETGGEEHFLAGHLGCVTCVKLAG---DGTVAMSD  255 (392)
Q Consensus       219 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---dg~~~~~~  255 (392)
                      |++|++.+.......    .++..+.|.+   +++.+++.
T Consensus       285 i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~  320 (343)
T 3lrv_A          285 LTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVV  320 (343)
T ss_dssp             EEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEE
T ss_pred             EEEEEEcccccceEe----cCceeEecCccccccceeEEE
Confidence            999999766543332    3455666665   55555543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.2e-32  Score=244.34  Aligned_cols=223  Identities=8%  Similarity=0.107  Sum_probs=168.2

Q ss_pred             cCCCCeEEEEeCCCeEEEEeCCCCcee-----EEecccccceEEEEEec--------CCCEEEEEeCCCeEEEEEcCCce
Q psy17243         35 SPNSIFAVSGSEDNTAKVWGLTLGSVV-----STFKSHQSTILAVAVLS--------DSRRVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        35 ~~~~~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~iwd~~~~~  101 (392)
                      .+++.+|++++.|++|+|||.++++..     ..+.+|.+.|++++|+|        ++++|++++.|++|++||+.++.
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~  177 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG  177 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence            345568999999999999999988654     34678999999999998        78899999999999999998776


Q ss_pred             ee---eecccceeEEEEeCCCC-EEEEecCCCcEEEEeCCCCCCCCcce----------------------eeeccccce
Q psy17243        102 LL---YSALGPSKCLTVTHNMK-YIVSGDGDNSLRIWPTSPQTHKDDER----------------------FTVSHSEEI  155 (392)
Q Consensus       102 ~~---~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~----------------------~~~~~~~~v  155 (392)
                      .+   ..+..++.+++|+|++. +|++++.|+.|++||+++........                      ....|...+
T Consensus       178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v  257 (393)
T 4gq1_A          178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL  257 (393)
T ss_dssp             EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred             eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence            54   34567889999999874 79999999999999998654322111                      112466788


Q ss_pred             EEEEEE-cCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeE------------------EEEec-CCCcEEEEecC
Q psy17243        156 TCFTVT-WDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSC------------------VAVAV-TNKSLVVSGSK  215 (392)
Q Consensus       156 ~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~------------------~~~~~-~~~~~l~~~~~  215 (392)
                      .++.|+ ++++.|++++.|+++++||+..++....+..|...+..                  ..++| .++.++++|+.
T Consensus       258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~  337 (393)
T 4gq1_A          258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ  337 (393)
T ss_dssp             SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred             eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence            889987 78999999999999999999887766655544433332                  23333 34557788899


Q ss_pred             CCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        216 DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      ||.|++||+.+++....+..|..+|.+++|+|||++++++.+
T Consensus       338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred             CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            999999999999998888889999999999999999999764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.8e-31  Score=236.96  Aligned_cols=232  Identities=19%  Similarity=0.257  Sum_probs=192.1

Q ss_pred             CCccCCeEEEEECCCccceeeec-------------cCCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecc
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTME-------------GHLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKS   66 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~-------------~h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~   66 (392)
                      +|+.||.|++||+.+++....+.             +|...|.+++|+| ++.+|++++.||.|++||+.+++....+. 
T Consensus        61 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-  139 (408)
T 4a11_B           61 SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-  139 (408)
T ss_dssp             EEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred             EEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-
Confidence            47889999999999887766654             5999999999999 77899999999999999999999988887 


Q ss_pred             cccceEEEEEecCC---CEEEEEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCC-EEEEecCCCcEEEEeCCCC
Q psy17243         67 HQSTILAVAVLSDS---RRVVTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMK-YIVSGDGDNSLRIWPTSPQ  139 (392)
Q Consensus        67 ~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~  139 (392)
                      +...+.++.+.+.+   .++++++.++.|++||+.+++.+..   +...+.+++|+|+++ .+++++.||.|++||++..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          140 FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred             CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence            78889999999854   4999999999999999998876554   445789999999998 5899999999999999754


Q ss_pred             CCCC-------------cceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC----------------------
Q psy17243        140 THKD-------------DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG----------------------  184 (392)
Q Consensus       140 ~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------------  184 (392)
                      ....             .......|...|.+++|+|++++|++++.||.|++||++++                      
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (408)
T 4a11_B          220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV  299 (408)
T ss_dssp             SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE
T ss_pred             CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE
Confidence            3111             11112468889999999999999999999999999998654                      


Q ss_pred             -------------------------eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec
Q psy17243        185 -------------------------KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA  234 (392)
Q Consensus       185 -------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  234 (392)
                                               +++..+.+|...|++++|+ +++.+|++++.||.|++||+.+++.+....
T Consensus       300 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          300 SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQ-SNFQELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             CCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEEECC--------
T ss_pred             ecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEc-CCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence                                     3456677899999999999 678899999999999999999988765543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.3e-31  Score=239.07  Aligned_cols=225  Identities=19%  Similarity=0.276  Sum_probs=192.4

Q ss_pred             CCccCCeEEEEECCC----------ccceeeeccCCcCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCCce-------eE
Q psy17243          1 MGGMDCLVNVWQMNS----------HELQSTMEGHLNTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLGSV-------VS   62 (392)
Q Consensus         1 tg~~dg~i~vwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~-------~~   62 (392)
                      +|+.||.|++|++.+          .+....+.+|...|.+++|+|++. +|++|+.||.|++|++.++..       ..
T Consensus       146 t~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  225 (430)
T 2xyi_A          146 TKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN  225 (430)
T ss_dssp             EECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSE
T ss_pred             EECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccce
Confidence            468899999999986          677888899999999999999988 999999999999999987432       45


Q ss_pred             EecccccceEEEEEec-CCCEEEEEeCCCeEEEEEcCCc---eee---eecccceeEEEEeCCCC-EEEEecCCCcEEEE
Q psy17243         63 TFKSHQSTILAVAVLS-DSRRVVTSDKAGVIAVWVADNA---QLL---YSALGPSKCLTVTHNMK-YIVSGDGDNSLRIW  134 (392)
Q Consensus        63 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~---~~~---~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~~  134 (392)
                      .+..|...|.+++|+| ++..|++++.|+.|++||++++   +.+   ..+...+.+++|+|++. ++++++.||.|++|
T Consensus       226 ~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vw  305 (430)
T 2xyi_A          226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW  305 (430)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence            6778999999999999 6789999999999999999976   232   34556889999999887 68899999999999


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcCCC-EEEEeeCCCcEEEEEcCC--------------CeEEEEEecCCCceeE
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQ-YLITGSRDMSLKVWQVVG--------------GKLAQVLVGHTDHVSC  199 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~--------------~~~~~~~~~~~~~v~~  199 (392)
                      |++...  ........|...|.+++|+|+++ +|++++.|+.|++||+..              .+.+..+.+|...|++
T Consensus       306 d~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  383 (430)
T 2xyi_A          306 DLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  383 (430)
T ss_dssp             ETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE
T ss_pred             eCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE
Confidence            998532  33445557899999999999984 799999999999999987              3667778889999999


Q ss_pred             EEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        200 VAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       200 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      ++|+|.+..+|++++.||.|+||++...
T Consensus       384 ~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          384 FSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9999554449999999999999998753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=239.04  Aligned_cols=241  Identities=10%  Similarity=0.071  Sum_probs=190.4

Q ss_pred             CCeEEEEECCCccceeeec-cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccccc-----ceEEEEEec
Q psy17243          5 DCLVNVWQMNSHELQSTME-GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQS-----TILAVAVLS   78 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~   78 (392)
                      ||.++.|++.+++....+. .|...|.+++|+|+|++||+++.||.|++||.+.  ++..+. |..     .|.+++|+|
T Consensus        63 dg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP  139 (588)
T 2j04_A           63 LEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP  139 (588)
T ss_dssp             CCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS
T ss_pred             CCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC
Confidence            4455566666555444443 4688999999999999999999999999999554  666677 665     499999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCcee-------eeec-------ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         79 DSRRVVTSDKAGVIAVWVADNAQL-------LYSA-------LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        79 ~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~-------~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      +|++|++|+.||+|++||+.++..       +..+       ...+.+++|+|++  +++++.|+.|++||+........
T Consensus       140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~  217 (588)
T 2j04_A          140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPV  217 (588)
T ss_dssp             SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCC
T ss_pred             CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccc
Confidence            999999999999999999998752       2332       3478999999999  88899999999999975543211


Q ss_pred             ceee-eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEE--ecCCCcEEEEecCCCeEEE
Q psy17243        145 ERFT-VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAV--AVTNKSLVVSGSKDSNLIV  221 (392)
Q Consensus       145 ~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~i  221 (392)
                      .... ..|...|.+++|+  ++.|++++ ++.|++||+.+++......+|...+..++|  + +++..+++++.||+ ++
T Consensus       218 ~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s-~d~~~La~a~edG~-kl  292 (588)
T 2j04_A          218 SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHE-KESTILLMSNKTSY-KV  292 (588)
T ss_dssp             EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTC-SSCEEEEECSSCEE-EE
T ss_pred             eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeC-CCCCEEEEEcCCCC-EE
Confidence            2222 3677899999999  68899887 699999999988875555489999999999  8 77889999999999 99


Q ss_pred             EECCCC-----------------------ceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        222 WDMETG-----------------------GEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       222 wd~~~~-----------------------~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      |..+.-                       +.+..+.+ ...|.+++|+|||+.++++.
T Consensus       293 w~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          293 LLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             EESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred             EeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence            987421                       11222222 45699999999999999875

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-32  Score=235.50  Aligned_cols=214  Identities=11%  Similarity=0.076  Sum_probs=175.8

Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcC---------Cceee
Q psy17243         33 AISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD---------NAQLL  103 (392)
Q Consensus        33 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---------~~~~~  103 (392)
                      .+.+++.+|++|+.||.|++||+++++.+..+.  ...|.++.|+|+   +++++.|+.|++|+..         +++.+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            344578899999999999999999999888886  567888889887   9999999999999665         44444


Q ss_pred             eecc----cceeEEEEeC--CCCEEEEecCCCcEEEEeCCCCCCCCcceee-eccccceEEEEEEcCCCEEEEeeCCCcE
Q psy17243        104 YSAL----GPSKCLTVTH--NMKYIVSGDGDNSLRIWPTSPQTHKDDERFT-VSHSEEITCFTVTWDSQYLITGSRDMSL  176 (392)
Q Consensus       104 ~~~~----~~~~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i  176 (392)
                      ..+.    .++.+++++|  +++++++++.|+.|++||+++...   .... ..+...+.+++|+|++.+|++|+.||.|
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i  194 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL  194 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCCCEEEEEcCCCEE
Confidence            4444    6799999999  999999999999999999985433   2222 3456679999999999999999999999


Q ss_pred             EEEEcCCCeEE-EEEec-CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc---ccccee--EEEEcCCC
Q psy17243        177 KVWQVVGGKLA-QVLVG-HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG---HLGCVT--CVKLAGDG  249 (392)
Q Consensus       177 ~i~d~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--~~~~~~dg  249 (392)
                      ++||+++++.+ ..+.. |..+|++++|+ +++.+|++++ |+.|++||+++++.+..+..   |...+.  +++|+|+|
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs-~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  272 (343)
T 3lrv_A          195 DVYNLSSPDQASSRFPVDEEAKIKEVKFA-DNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG  272 (343)
T ss_dssp             EEEESSCTTSCCEECCCCTTSCEEEEEEC-TTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS
T ss_pred             EEEECCCCCCCccEEeccCCCCEEEEEEe-CCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC
Confidence            99999999887 78887 99999999999 6788999998 55999999999887665543   444444  69999999


Q ss_pred             eEEEEcC
Q psy17243        250 TVAMSDL  256 (392)
Q Consensus       250 ~~~~~~~  256 (392)
                      ++++++.
T Consensus       273 ~~l~~~s  279 (343)
T 3lrv_A          273 KNMIAYS  279 (343)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEec
Confidence            9999954

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-32  Score=257.68  Aligned_cols=226  Identities=15%  Similarity=0.204  Sum_probs=195.8

Q ss_pred             CCccCCeEEEEECC--CccceeeeccCCcCeeEEEecCC--CCeEEEEeCCCeEEEEeCCCCc--eeEEecccccceEEE
Q psy17243          1 MGGMDCLVNVWQMN--SHELQSTMEGHLNTVSCVAISPN--SIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~   74 (392)
                      +|+.||.|+|||+.  +++....+.+|..+|++++|+|+  +++|++|+.||.|++||+.+++  .+..+..|...|.++
T Consensus        26 tg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v  105 (753)
T 3jro_A           26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV  105 (753)
T ss_dssp             EEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred             EEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEE
Confidence            47889999999997  66788889999999999999987  8999999999999999999987  777888899999999


Q ss_pred             EEecC--CCEEEEEeCCCeEEEEEcCCcee-----eeecccceeEEEEeC-------------CCCEEEEecCCCcEEEE
Q psy17243         75 AVLSD--SRRVVTSDKAGVIAVWVADNAQL-----LYSALGPSKCLTVTH-------------NMKYIVSGDGDNSLRIW  134 (392)
Q Consensus        75 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~-------------~~~~l~~~~~d~~i~~~  134 (392)
                      +|+|+  ++.+++++.||.|++||+.++..     ...+...+.++.|+|             ++.++++++.||.|++|
T Consensus       106 ~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iw  185 (753)
T 3jro_A          106 QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW  185 (753)
T ss_dssp             EECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEE
T ss_pred             EECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEE
Confidence            99999  99999999999999999987732     234556889999999             58999999999999999


Q ss_pred             eCCCCCCC-CcceeeeccccceEEEEEEcC---CCEEEEeeCCCcEEEEEcCCCe-----EEEEEecCCCceeEEEEecC
Q psy17243        135 PTSPQTHK-DDERFTVSHSEEITCFTVTWD---SQYLITGSRDMSLKVWQVVGGK-----LAQVLVGHTDHVSCVAVAVT  205 (392)
Q Consensus       135 d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~v~~~~~~~~  205 (392)
                      |++..... ........|...|.+++|+|+   +++|++++.||.|++||+++++     .......|...|++++|+ +
T Consensus       186 d~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s-p  264 (753)
T 3jro_A          186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-L  264 (753)
T ss_dssp             EEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC-T
T ss_pred             eccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc-C
Confidence            99865332 223344578999999999999   8999999999999999998864     233334588899999999 6


Q ss_pred             CCcEEEEecCCCeEEEEECCCC
Q psy17243        206 NKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       206 ~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      ++.++++++.||.|++|++..+
T Consensus       265 dg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          265 SGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             TTCCEEEECSSSCEECCBCCSS
T ss_pred             CCCEEEEEcCCCEEEEEecCCC
Confidence            7889999999999999999854

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.3e-29  Score=228.07  Aligned_cols=247  Identities=14%  Similarity=0.089  Sum_probs=209.2

Q ss_pred             CccCCeEEEEECCCcccee-----eeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEE
Q psy17243          2 GGMDCLVNVWQMNSHELQS-----TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAV   76 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~   76 (392)
                      ++.++.|++||+.+++...     .+.+|...|.+++|+|+++++++++.|+.|++||+++++.+..+..|...+.+++|
T Consensus       140 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  219 (433)
T 3bws_A          140 LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLY  219 (433)
T ss_dssp             BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEE
T ss_pred             eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEE
Confidence            5678899999999998877     45679999999999999999999999999999999999999999889999999999


Q ss_pred             ecCCCEEEEEe-CCCeEEEEEcCCceeeeecc--cceeEEEEeCCCCEEEEec--------CCCcEEEEeCCCCCCCCcc
Q psy17243         77 LSDSRRVVTSD-KAGVIAVWVADNAQLLYSAL--GPSKCLTVTHNMKYIVSGD--------GDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        77 ~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~  145 (392)
                      +|+++.+++++ .++.|++||+.+++.+..+.  ..+.+++++|+++++++++        .|+.|++||+.+.+.    
T Consensus       220 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~----  295 (433)
T 3bws_A          220 DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL----  295 (433)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE----
T ss_pred             cCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE----
Confidence            99999886554 79999999999998876554  3578999999999999988        588999999974422    


Q ss_pred             eeeeccccceEEEEEEcCCCEE-EEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecC---------
Q psy17243        146 RFTVSHSEEITCFTVTWDSQYL-ITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK---------  215 (392)
Q Consensus       146 ~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------  215 (392)
                      .....+...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. +...+.+++|+ +++.++++++.         
T Consensus       296 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~  373 (433)
T 3bws_A          296 IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALS-PDGKYLYVSCRGPNHPTEGY  373 (433)
T ss_dssp             EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEEC-TTSSEEEEEECCCCCTTTCT
T ss_pred             EeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEc-CCCCEEEEEecCCCcccccc
Confidence            2223455688999999999755 566889999999999999888776 67889999999 56666666655         


Q ss_pred             ------CCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        216 ------DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       216 ------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                            ||.|++||+.+++.+..+.. ...+.+++|+|||+++++.
T Consensus       374 ~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          374 LKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             TSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEE
T ss_pred             ccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEE
Confidence                  57999999999998888875 4578999999999988765

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=1.4e-30  Score=218.07  Aligned_cols=218  Identities=12%  Similarity=0.086  Sum_probs=166.3

Q ss_pred             cCCeEEEEECCCc---cceeeeccCCc-------------------------CeeEEEecCC----CCeEEEEeC-----
Q psy17243          4 MDCLVNVWQMNSH---ELQSTMEGHLN-------------------------TVSCVAISPN----SIFAVSGSE-----   46 (392)
Q Consensus         4 ~dg~i~vwd~~~~---~~~~~~~~h~~-------------------------~v~~~~~~~~----~~~l~~~~~-----   46 (392)
                      ....|++|+..++   +++++++.|..                         .|.+++++|+    ++++++++.     
T Consensus        61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~  140 (356)
T 2w18_A           61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVL  140 (356)
T ss_dssp             ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEE
T ss_pred             ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEE
Confidence            3568999999887   78888877765                         4556666777    777776553     


Q ss_pred             ---------------CCeEEEEeC-CCCceeEEecccccceEEEEEec---CCCEEEEEeCCCeEEEEEcCCceeeeecc
Q psy17243         47 ---------------DNTAKVWGL-TLGSVVSTFKSHQSTILAVAVLS---DSRRVVTSDKAGVIAVWVADNAQLLYSAL  107 (392)
Q Consensus        47 ---------------dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  107 (392)
                                     |+.|++|++ .+++.+..+..|...+..++|++   ++..|++++.|++|++||+.+++.++.+.
T Consensus       141 ~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~  220 (356)
T 2w18_A          141 GLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH  220 (356)
T ss_dssp             EETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence                           888889988 55888888888888888888888   77899999999999999999999888775


Q ss_pred             c------ceeEEEEeCCCCEE------------EEecCCCcEEEEeCCCCCCCCccee--eeccccceEEEEEEcCCCEE
Q psy17243        108 G------PSKCLTVTHNMKYI------------VSGDGDNSLRIWPTSPQTHKDDERF--TVSHSEEITCFTVTWDSQYL  167 (392)
Q Consensus       108 ~------~~~~~~~~~~~~~l------------~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l  167 (392)
                      +      .+.+++|+|++.++            ++|+.|++|++||..++........  ..+|...+.+..+  ++.++
T Consensus       221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~l  298 (356)
T 2w18_A          221 IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCA  298 (356)
T ss_dssp             CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEE
T ss_pred             CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEE
Confidence            3      34567899999886            5677899999999975433221111  1244444444333  47899


Q ss_pred             EEeeCCCcEEEEEcCCCeEEEEEecCCCcee-EEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        168 ITGSRDMSLKVWQVVGGKLAQVLVGHTDHVS-CVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       168 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      ++++.|++|+|||+.+++++..+.+|...+. +++|+ +++.+|++|+.|++|+|||+
T Consensus       299 ASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS-PDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          299 AAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS-GTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC-SSSSEEEEECTTSCEEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC-CCCCEEEEEECCCcEEEecC
Confidence            9999999999999999999999999987665 58999 78899999999999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.98  E-value=4.5e-30  Score=235.79  Aligned_cols=341  Identities=9%  Similarity=0.011  Sum_probs=243.3

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeC--CCCceeEEecccccceEEEEEec-
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGL--TLGSVVSTFKSHQSTILAVAVLS-   78 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~-   78 (392)
                      ++.|++|.+||..+++++.++..+.. +..++|+|++++|++++.|+.|.+||+  .+++.+.++. +...+..++|+| 
T Consensus       155 ~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~  232 (543)
T 1nir_A          155 LRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKF  232 (543)
T ss_dssp             EGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCS
T ss_pred             EcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCC
Confidence            46789999999999999999984333 889999999999999999999999999  8899988888 455679999999 


Q ss_pred             ---CCCEEEEEeC-CCeEEEEEcCCceeeeeccc--------------ceeEEEEeCCCCE-EEEecCCCcEEEEeCCCC
Q psy17243         79 ---DSRRVVTSDK-AGVIAVWVADNAQLLYSALG--------------PSKCLTVTHNMKY-IVSGDGDNSLRIWPTSPQ  139 (392)
Q Consensus        79 ---~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~  139 (392)
                         +++++++++. ++.|.+||..+++++..+..              .+..+.++|++.. +++...++.|.+||+...
T Consensus       233 ~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~  312 (543)
T 1nir_A          233 KGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI  312 (543)
T ss_dssp             TTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTS
T ss_pred             cCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCC
Confidence               9999999884 89999999999988765432              4567889997655 556677899999999754


Q ss_pred             CCCCcceeeeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEec----CCCceeEEEEecCCCcEEEEec
Q psy17243        140 THKDDERFTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVG----HTDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      ....  .....+...+..+.|+|++++|++++ .+++|.+||+.+++++..+..    |......+ ++|..+.+++++.
T Consensus       313 ~~l~--~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~  389 (543)
T 1nir_A          313 DNLT--VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH  389 (543)
T ss_dssp             SSCE--EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred             Ccce--eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc
Confidence            3322  11224566788899999999877655 588999999999999888864    54433333 4545577778775


Q ss_pred             -CCCeEEEEECCC-------CceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEec
Q psy17243        215 -KDSNLIVWDMET-------GGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRK  286 (392)
Q Consensus       215 -~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (392)
                       .|++|.+||+.+       .++++++..|...+..+.++|||+.+.++..-...            .+.......|...
T Consensus       390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~------------~~~~~~v~v~d~~  457 (543)
T 1nir_A          390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD------------ARISQSVAVFDLK  457 (543)
T ss_dssp             SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSS------------HHHHTCEEEEETT
T ss_pred             CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCC------------cccCceEEEEECC
Confidence             689999999998       88999999999899999999999999997521100            0011122333333


Q ss_pred             cCCcc-eeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhhhccc----ChHHHHHHhhCCCCCCcccc
Q psy17243        287 YGHLT-SSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQ----HFDQLEALWNKKSPPRSRRF  361 (392)
Q Consensus       287 ~~~~~-~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~----~~d~~i~~Wd~~~~~~~~~~  361 (392)
                      .+... ..+.+....          +-.++..+++      +++|+|||++|.++.    +.|+.|.|||..+.+.... 
T Consensus       458 ~~~~~~~~~~v~~~~----------~~~~~~~~~~------~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~-  520 (543)
T 1nir_A          458 NLDAKYQVLPIAEWA----------DLGEGAKRVV------QPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV-  520 (543)
T ss_dssp             CTTSCCEEECHHHHH----------CCCSSCCEEE------EEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE-
T ss_pred             CCCCCeEEeechhhc----------ccCCCCCceE------eccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe-
Confidence            22211 000000000          0000111122      236999999998552    2579999999998876322 


Q ss_pred             ccccccccCccccccccCccCCC
Q psy17243        362 EHSMSKQNSYSSRQHSVDTDELS  384 (392)
Q Consensus       362 ~~~~~~~~~~~~~~fspdg~~l~  384 (392)
                         +...     ...+|+|++-+
T Consensus       521 ---i~~~-----~~~~p~g~~~~  535 (543)
T 1nir_A          521 ---VKDP-----RLITPTGKFNV  535 (543)
T ss_dssp             ---ECCT-----TCCSEEEEEEH
T ss_pred             ---ecCC-----CccCCCeeeec
Confidence               2211     13568887643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=3.2e-29  Score=219.20  Aligned_cols=244  Identities=14%  Similarity=0.125  Sum_probs=191.9

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeE-EEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEE
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV   83 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   83 (392)
                      +..+++|++++++.......  ..+..+++.++++++ ++++.|++|++||+.+++.+..+. +...|.++.|+++.  +
T Consensus        39 ~~~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~  113 (355)
T 3vu4_A           39 LKSFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--I  113 (355)
T ss_dssp             SSEEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--E
T ss_pred             CCEEEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--E
Confidence            44588999998776655442  358889999988877 567788999999999999999887 67799999998763  4


Q ss_pred             EEEeCCCeEEEEEcCCc-eeeeecccceeEEEEeCCCCEEEE--ecCCCcEEEEeCCCCCCC------------Cc-cee
Q psy17243         84 VTSDKAGVIAVWVADNA-QLLYSALGPSKCLTVTHNMKYIVS--GDGDNSLRIWPTSPQTHK------------DD-ERF  147 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~l~~--~~~d~~i~~~d~~~~~~~------------~~-~~~  147 (392)
                      +++ .++.|++||+.++ +.+..+..+...+++++  .++++  |+.+|.|++||+......            .. ...
T Consensus       114 ~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~  190 (355)
T 3vu4_A          114 VVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVL  190 (355)
T ss_dssp             EEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEE
T ss_pred             EEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEE
Confidence            444 4789999999998 66666655566677777  56666  688999999999854310            01 445


Q ss_pred             eeccccceEEEEEEcCCCEEEEeeCCCc-EEEEEcCCCeEEEEEe-c-CCCceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        148 TVSHSEEITCFTVTWDSQYLITGSRDMS-LKVWQVVGGKLAQVLV-G-HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      ..+|...|.+++|+|++++|++++.|++ |++||+++++++..+. + |...|++++|+ +++.+|++++.|+.|++||+
T Consensus       191 ~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s-~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS-TDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEEC-TTSCEEEEEETTCEEEEEES
T ss_pred             EEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEEC-CCCCEEEEEECCCEEEEEEc
Confidence            5689999999999999999999999998 9999999999999998 5 99999999999 68899999999999999999


Q ss_pred             CCCcee--eeec---------------------ccccceeEEEEcCCCeEEEEcCC
Q psy17243        225 ETGGEE--HFLA---------------------GHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       225 ~~~~~~--~~~~---------------------~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      +.+...  ..+.                     ........++|++||+.++.+..
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~  325 (355)
T 3vu4_A          270 FNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH  325 (355)
T ss_dssp             SCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT
T ss_pred             cCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC
Confidence            865321  1111                     11223477999999998888753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=4.2e-31  Score=234.37  Aligned_cols=222  Identities=10%  Similarity=0.039  Sum_probs=169.2

Q ss_pred             CCccCCeEEEEECCCccc-----eeeeccCCcCeeEEEecC--------CCCeEEEEeCCCeEEEEeCCCCceeEEeccc
Q psy17243          1 MGGMDCLVNVWQMNSHEL-----QSTMEGHLNTVSCVAISP--------NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH   67 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~~--------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~   67 (392)
                      +|+.|++|++||..+++.     +..+.+|.+.|++++|+|        ++++||+|+.|++|+|||+.++..+..+..|
T Consensus       106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~  185 (393)
T 4gq1_A          106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPL  185 (393)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEEC
T ss_pred             EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCC
Confidence            478899999999987754     345789999999999998        7889999999999999999999888888889


Q ss_pred             ccceEEEEEecCCC-EEEEEeCCCeEEEEEcCCceeeeec----------------------------ccceeEEEEe-C
Q psy17243         68 QSTILAVAVLSDSR-RVVTSDKAGVIAVWVADNAQLLYSA----------------------------LGPSKCLTVT-H  117 (392)
Q Consensus        68 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~----------------------------~~~~~~~~~~-~  117 (392)
                      ..+|.+++|+|++. +|++++.|+.|++||+.+++.....                            ...+.++.|. +
T Consensus       186 ~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~  265 (393)
T 4gq1_A          186 SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGS  265 (393)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETT
T ss_pred             CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecC
Confidence            99999999999874 7999999999999999887543221                            1234567765 7


Q ss_pred             CCCEEEEecCCCcEEEEeCCCCCCCCcceee---------------eccccceEEEEEEc--CCCEEEEeeCCCcEEEEE
Q psy17243        118 NMKYIVSGDGDNSLRIWPTSPQTHKDDERFT---------------VSHSEEITCFTVTW--DSQYLITGSRDMSLKVWQ  180 (392)
Q Consensus       118 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d  180 (392)
                      +++.+++++.|+.+++||+............               ...........++|  ++.++++|+.||.|++||
T Consensus       266 dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd  345 (393)
T 4gq1_A          266 DGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLIN  345 (393)
T ss_dssp             TTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEE
Confidence            9999999999999999999754332211100               00111112223443  344677788899999999


Q ss_pred             cCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        181 VVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      +.++++...+..|..+|.+++|+ +++++|++++.+| +.+|.+
T Consensus       346 ~~~~~~~~~~~~~~~~V~svafs-pdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          346 TYEKDSNSIPIQLGMPIVDFCWH-QDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             TTCTTCCEEEEECSSCEEEEEEC-TTSSEEEEEESSE-EEEEEE
T ss_pred             CCCCcEEEEecCCCCcEEEEEEc-CCCCEEEEEeCCC-eEEEEE
Confidence            99999888888899999999999 7889999998665 666654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=4.2e-28  Score=215.28  Aligned_cols=232  Identities=16%  Similarity=0.108  Sum_probs=192.8

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEE-EEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAV-SGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|+ +++.++.|++||+.+++.+..+.. ...+.+++|+|++
T Consensus        50 ~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg  127 (391)
T 1l0q_A           50 NAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDG  127 (391)
T ss_dssp             EGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTS
T ss_pred             CCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCC
Confidence            4579999999999999998888655 899999999999775 455679999999999999888874 4578999999999


Q ss_pred             CEE-EEEeCCCeEEEEEcCCceeeeecc--cceeEEEEeCCCCEE-EEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         81 RRV-VTSDKAGVIAVWVADNAQLLYSAL--GPSKCLTVTHNMKYI-VSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        81 ~~l-~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      +.+ ++++.++.|++||+.+++.+..+.  ..+.+++++|+++++ +++..++.|++||+++...    .....+...+.
T Consensus       128 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~~  203 (391)
T 1l0q_A          128 KKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV----IDTVKVEAAPS  203 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEECSSEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE----EEEEecCCCcc
Confidence            987 677889999999999988766543  456899999999987 5677889999999975422    22234567889


Q ss_pred             EEEEEcCCCEEEEee---CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee
Q psy17243        157 CFTVTWDSQYLITGS---RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                      +++|+|++++|++++   .++.|++||+++++.+..+..|. .+.+++|+|.+..++++++.|+.|++||+.+++.+..+
T Consensus       204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence            999999999999888   68999999999999988888665 57889999544445578889999999999999999888


Q ss_pred             cccccce
Q psy17243        234 AGHLGCV  240 (392)
Q Consensus       234 ~~~~~~v  240 (392)
                      ..+..+.
T Consensus       283 ~~~~~~~  289 (391)
T 1l0q_A          283 AVGKNPY  289 (391)
T ss_dssp             ECSSSEE
T ss_pred             ECCcCCC
Confidence            8776553

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.2e-27  Score=200.42  Aligned_cols=238  Identities=13%  Similarity=0.088  Sum_probs=162.9

Q ss_pred             CccceeeeccCCc----CeeEEEecCCCC---eEEEEeCCCeEEEEeCCCC---ceeEEeccccc---------------
Q psy17243         15 SHELQSTMEGHLN----TVSCVAISPNSI---FAVSGSEDNTAKVWGLTLG---SVVSTFKSHQS---------------   69 (392)
Q Consensus        15 ~~~~~~~~~~h~~----~v~~~~~~~~~~---~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~---------------   69 (392)
                      +.+++.+++...+    .+.++.|-..+-   .+++++ ...|++|+..++   +.++++..|+.               
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  102 (356)
T 2w18_A           24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV  102 (356)
T ss_dssp             CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred             eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence            3455666665433    245565644332   566666 468999999998   77777776664               


Q ss_pred             ----------ceEEEEEecC----CCEEEEEeC--------------------CCeEEEEEcC-Cceeeee---ccccee
Q psy17243         70 ----------TILAVAVLSD----SRRVVTSDK--------------------AGVIAVWVAD-NAQLLYS---ALGPSK  111 (392)
Q Consensus        70 ----------~v~~~~~~~~----~~~l~~~~~--------------------d~~i~iwd~~-~~~~~~~---~~~~~~  111 (392)
                                .|.+++++|+    ++.+++++.                    |+.|++|++. +++.+..   +...+.
T Consensus       103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~  182 (356)
T 2w18_A          103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEET  182 (356)
T ss_dssp             EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSC
T ss_pred             eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCcee
Confidence                      4566667777    777776553                    7777777773 3555433   334566


Q ss_pred             EEEEeC---CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEE------------EEeeCCCcE
Q psy17243        112 CLTVTH---NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYL------------ITGSRDMSL  176 (392)
Q Consensus       112 ~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l------------~~~~~dg~i  176 (392)
                      .++|++   ++..|++++.|++|++||+.+++....+.....+...+.+++|+|++.++            ++|+.|++|
T Consensus       183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI  262 (356)
T 2w18_A          183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL  262 (356)
T ss_dssp             EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred             eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence            777777   77899999999999999998654332221111123467888999999876            567789999


Q ss_pred             EEEEcCCCeEEEEE-----ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccccee-EEEEcCCCe
Q psy17243        177 KVWQVVGGKLAQVL-----VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT-CVKLAGDGT  250 (392)
Q Consensus       177 ~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~dg~  250 (392)
                      ++||..+++.+..+     .+|...+.+..++   +.++++++.|++|+|||+.+++++.++.+|...+. .++|+|||+
T Consensus       263 klWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~  339 (356)
T 2w18_A          263 IVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDS  339 (356)
T ss_dssp             EEEETTTTEEEEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSS
T ss_pred             EEEECCCCEEEEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCC
Confidence            99999999987765     3666555444443   77899999999999999999999999999987655 689999999


Q ss_pred             EEEEcC
Q psy17243        251 VAMSDL  256 (392)
Q Consensus       251 ~~~~~~  256 (392)
                      +++++.
T Consensus       340 ~LaSGS  345 (356)
T 2w18_A          340 HLLAGQ  345 (356)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            888764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=2.2e-26  Score=205.26  Aligned_cols=234  Identities=14%  Similarity=0.044  Sum_probs=188.4

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCC---eEEEEeCCCCceeEEecccccceEEEEEecCCCE
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDN---TAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      +.|++||+. +.....+.+|...|.+++|+|+|++|++++.++   .|++||+++++.. .+..|...+.+++|+|+++.
T Consensus       159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~  236 (415)
T 2hqs_A          159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSK  236 (415)
T ss_dssp             EEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSE
T ss_pred             ceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCE
Confidence            799999997 455677888999999999999999999999875   9999999998875 45568889999999999998


Q ss_pred             EE-EEeCCC--eEEEEEcCCceeee--ecccceeEEEEeCCCCEEEEecC-CC--cEEEEeCCCCCCCCcceeeeccccc
Q psy17243         83 VV-TSDKAG--VIAVWVADNAQLLY--SALGPSKCLTVTHNMKYIVSGDG-DN--SLRIWPTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        83 l~-~~~~d~--~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~~  154 (392)
                      |+ +++.++  .|++||+.+++...  .....+.++.|+|++++|++++. ++  .|.+||+.+..    ......+...
T Consensus       237 la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~----~~~l~~~~~~  312 (415)
T 2hqs_A          237 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----PQRITWEGSQ  312 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----CEECCCSSSE
T ss_pred             EEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC----EEEEecCCCc
Confidence            88 566555  49999998876533  33456789999999999988876 44  67777886443    1222345677


Q ss_pred             eEEEEEEcCCCEEEEeeCC---CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC---eEEEEECCCCc
Q psy17243        155 ITCFTVTWDSQYLITGSRD---MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS---NLIVWDMETGG  228 (392)
Q Consensus       155 v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~  228 (392)
                      +.+++|+|++++|++++.+   ..|++||+.+++.. .+..+. .+.+++|+ +++.+|+.++.++   .|++||+. ++
T Consensus       313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~s-pdg~~l~~~s~~~~~~~l~~~d~~-g~  388 (415)
T 2hqs_A          313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLA-PNGTMVIYSSSQGMGSVLNLVSTD-GR  388 (415)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEEC-TTSSEEEEEEEETTEEEEEEEETT-SC
T ss_pred             ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEc-CCCCEEEEEEcCCCccEEEEEECC-CC
Confidence            8899999999999988764   58999999988764 455554 88999999 6677777777666   79999987 66


Q ss_pred             eeeeecccccceeEEEEcCCC
Q psy17243        229 EEHFLAGHLGCVTCVKLAGDG  249 (392)
Q Consensus       229 ~~~~~~~~~~~v~~~~~~~dg  249 (392)
                      ....+..|.+.|.+++|+|.-
T Consensus       389 ~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          389 FKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             CEEECCCSSSEEEEEEECCCC
T ss_pred             cEEEeeCCCCCCcCCcccccc
Confidence            677888999999999999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=5.2e-27  Score=199.78  Aligned_cols=251  Identities=16%  Similarity=0.114  Sum_probs=194.7

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC-CceeEEeccc-ccceEEEEEecC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL-GSVVSTFKSH-QSTILAVAVLSD   79 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~-~~~v~~~~~~~~   79 (392)
                      ++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|.+||+++ ++.......+ ...+.+++|+|+
T Consensus        18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD   95 (297)
T ss_dssp             CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred             CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence            567899999999988766 4555899999999999999999986 78999999999 8877666655 367899999999


Q ss_pred             CCEEEEEeC--CC--eEEEEEcCCceeee-ecccceeEEEEeCCCCEEE-EecCCCcEEEEeCCCCCCCCcceeeecccc
Q psy17243         80 SRRVVTSDK--AG--VIAVWVADNAQLLY-SALGPSKCLTVTHNMKYIV-SGDGDNSLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        80 ~~~l~~~~~--d~--~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      +++|++++.  ++  .|..+++.+++... .....+..+.|+|+++.++ ++..++.+++|++....  ........+..
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~  173 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTHGEG  173 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCCSSS
T ss_pred             CCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCC--CcceEcccCCC
Confidence            999999983  34  44555555554322 2233577889999999887 67788999999865322  12233345677


Q ss_pred             ceEEEEEEcCCCEEEEee-CCCcEEEEEcC-CCeEEEEEecCCCceeEEEEecCCCcEEEEecCC-----------CeEE
Q psy17243        154 EITCFTVTWDSQYLITGS-RDMSLKVWQVV-GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKD-----------SNLI  220 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~i~  220 (392)
                      .+.+++|+|++++|++++ .++.+.+|++. .+.....+..|...+..++|+ +++.+|+.++.+           +.|+
T Consensus       174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPS-PSGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEEC-TTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEEC-CCCCEEEEEEcCCCCCcccccCceEEE
Confidence            899999999999887766 58899999986 556667777788889999999 567777666654           5699


Q ss_pred             EEECCCCcee--eeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        221 VWDMETGGEE--HFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       221 iwd~~~~~~~--~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      +||+.+++..  ..+.+|...+..++|+|||+.+++...
T Consensus       253 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          253 LMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             EEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             EEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence            9999987653  344577889999999999998887653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=7e-28  Score=231.44  Aligned_cols=308  Identities=11%  Similarity=0.070  Sum_probs=213.1

Q ss_pred             CcCeeEEEecCCCCeEEEEeC-CC-----eEEEEeCCCCceeEEeccccc------------------------ceEEEE
Q psy17243         26 LNTVSCVAISPNSIFAVSGSE-DN-----TAKVWGLTLGSVVSTFKSHQS------------------------TILAVA   75 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~-dg-----~v~iwd~~~~~~~~~~~~~~~------------------------~v~~~~   75 (392)
                      ...+.+++|+|||++|++++. |+     .|.+||+.+++....+..+..                        .+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457999999999999999988 88     899999999988777765433                        378999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCc---eee--eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeec
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNA---QLL--YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS  150 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~---~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  150 (392)
                      |+|||++|++++. +.|++||+.++   +..  ......+..++|+|+|++|+.++. +.|++||+.++...   .....
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~---~~~~~  190 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQM---QLTAD  190 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEE---ECCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEE---EeccC
Confidence            9999999999887 99999999987   432  233456889999999999998874 68999999754321   11111


Q ss_pred             ccc----------------ceEEEEEEcCCCEEEEeeCCC---------------------------------cEEEEEc
Q psy17243        151 HSE----------------EITCFTVTWDSQYLITGSRDM---------------------------------SLKVWQV  181 (392)
Q Consensus       151 ~~~----------------~v~~~~~~~~~~~l~~~~~dg---------------------------------~i~i~d~  181 (392)
                      +..                .+..++|+|||++|++++.|+                                 .|++||+
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            221                147799999999999987665                                 7899999


Q ss_pred             CC-CeEEEEEe--cCCCceeEEEEecCCCcEEEEec----CCCeEEEEECCCCceeeeeccccc----ceeEEEEcCCCe
Q psy17243        182 VG-GKLAQVLV--GHTDHVSCVAVAVTNKSLVVSGS----KDSNLIVWDMETGGEEHFLAGHLG----CVTCVKLAGDGT  250 (392)
Q Consensus       182 ~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~dg~  250 (392)
                      .+ ++......  .|...+..++| |++..+++++.    .+..|++||+.+++....+..+..    .+..++|+|||+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~  349 (741)
T 2ecf_A          271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS  349 (741)
T ss_dssp             STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC
T ss_pred             CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe
Confidence            88 77654433  36778999999 65544443332    357899999999988776665543    456899999999


Q ss_pred             EEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCC-C
Q psy17243        251 VAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQ-G  329 (392)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~-~  329 (392)
                      +++++..++.                 ...+.+... +. ..               .++.. +..+        ... .
T Consensus       350 ~~~~~~~~g~-----------------~~l~~~~~~-~~-~~---------------~l~~~-~~~v--------~~~~~  386 (741)
T 2ecf_A          350 ILWSSERTGF-----------------QHLYRIDSK-GK-AA---------------ALTHG-NWSV--------DELLA  386 (741)
T ss_dssp             EEEEECTTSS-----------------CEEEEECSS-SC-EE---------------ESCCS-SSCE--------EEEEE
T ss_pred             EEEEecCCCc-----------------cEEEEEcCC-CC-ee---------------eeeec-ceEE--------EeEeE
Confidence            7777543211                 111111110 00 00               00000 0000        011 3


Q ss_pred             CChhhhhhhcccChHH--HHHHhhCCC-CCCccccccccccccCccccccccCccCCCCc
Q psy17243        330 LGPEQAALAQSQHFDQ--LEALWNKKS-PPRSRRFEHSMSKQNSYSSRQHSVDTDELSSP  386 (392)
Q Consensus       330 ~s~dg~~la~s~~~d~--~i~~Wd~~~-~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~  386 (392)
                      |+|||+.|+++++.|+  .++||++.. +..+..    +.....+..++|||||++|+..
T Consensus       387 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~----l~~~~~~~~~~~spdg~~l~~~  442 (741)
T 2ecf_A          387 VDEKAGLAYFRAGIESARESQIYAVPLQGGQPQR----LSKAPGMHSASFARNASVYVDS  442 (741)
T ss_dssp             EETTTTEEEEEECSSCTTCBEEEEEETTCCCCEE----CCCSCSEEEEEECTTSSEEEEE
T ss_pred             EeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeee----cccCCCceEEEECCCCCEEEEE
Confidence            8899998876777776  789999864 333332    2223334568999999998844

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=3.6e-28  Score=232.86  Aligned_cols=317  Identities=11%  Similarity=0.010  Sum_probs=212.1

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccccc---ceEEEEEecCCCEEEEEeCC---------CeEEE
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQS---TILAVAVLSDSRRVVTSDKA---------GVIAV   94 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~i   94 (392)
                      ..+.+++|+|+|+++++ +.||+|++||+.+++....+..|..   .|.+++|+|||++|++++.+         +.+.+
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            34778999999997766 7899999999999998888876664   49999999999999999764         78889


Q ss_pred             EEcCCcee--eeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecccc----------------
Q psy17243         95 WVADNAQL--LYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE----------------  153 (392)
Q Consensus        95 wd~~~~~~--~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~----------------  153 (392)
                      ||+.+++.  +.....   .+..++|+|+|+.|+.++. +.|++||+.++..   ......+..                
T Consensus        96 ~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~---~~~~~~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA---IRVVSTGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC---EEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             EECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce---EEEecCCCCCceECcccceeEEEEe
Confidence            99998875  222222   2678999999999999886 7899999975432   222222222                


Q ss_pred             --ceEEEEEEcCCCEEEEeeCCC----------------------------------cEEEEEcCCCeEEEEEecC----
Q psy17243        154 --EITCFTVTWDSQYLITGSRDM----------------------------------SLKVWQVVGGKLAQVLVGH----  193 (392)
Q Consensus       154 --~v~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~----  193 (392)
                        .+.+++|+|||++|++++.++                                  .|++||+.+++....+..+    
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~  251 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence              237899999999999887543                                  7999999988765666544    


Q ss_pred             --CCceeEEEEecCCCcEEEEec----CCCeEEEEECCCCceeeeeccc-ccce----eEEEEcCCCeEEEEc-C-CCCC
Q psy17243        194 --TDHVSCVAVAVTNKSLVVSGS----KDSNLIVWDMETGGEEHFLAGH-LGCV----TCVKLAGDGTVAMSD-L-PPSR  260 (392)
Q Consensus       194 --~~~v~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~-~~~v----~~~~~~~dg~~~~~~-~-~~~~  260 (392)
                        ...+..++|+ ++++++++..    .+..|++||+.+++....+..+ ...+    ..++|+|||+.+++. . .+..
T Consensus       252 ~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  330 (723)
T 1xfd_A          252 MREYYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG  330 (723)
T ss_dssp             GSSEEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred             CccceeEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence              5678899999 5677776654    2357999999999876655433 3334    378999999977653 2 1110


Q ss_pred             CCCCCCccccccccccccceeEEE-eccCCc--ceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhh
Q psy17243        261 PAGPKRPLRRLLKKEVSLDTYTWQ-RKYGHL--TSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAAL  337 (392)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~l  337 (392)
                      .             ......+.|. ...+..  ..               .++...      |.  .....+|||||+.|
T Consensus       331 ~-------------~~~~~l~~~d~~~~~~~~~~~---------------~l~~~~------~~--~~~~~~~spdg~~l  374 (723)
T 1xfd_A          331 R-------------GKFYHITVSSSQPNSSNDNIQ---------------SITSGD------WD--VTKILAYDEKGNKI  374 (723)
T ss_dssp             S-------------SCEEEEEEECSSCCSSSCCCC---------------BSCCSS------SC--EEEEEEEETTTTEE
T ss_pred             C-------------cceeEEEEEeccCCCCcccee---------------EeecCC------eE--EEeeeEEcCCCCEE
Confidence            0             0001122222 010100  00               000000      00  00012589999999


Q ss_pred             hcccChH--HHHHHhhCCCCC--CccccccccccccCccccccccCccCCCC
Q psy17243        338 AQSQHFD--QLEALWNKKSPP--RSRRFEHSMSKQNSYSSRQHSVDTDELSS  385 (392)
Q Consensus       338 a~s~~~d--~~i~~Wd~~~~~--~~~~~~~~~~~~~~~~~~~fspdg~~l~~  385 (392)
                      ++++..+  +.++||++....  ....+...+.+...+..++|||||++|+.
T Consensus       375 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~  426 (723)
T 1xfd_A          375 YFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL  426 (723)
T ss_dssp             EEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred             EEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence            8666666  789999986543  22222111112344666899999998873

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.1e-26  Score=213.45  Aligned_cols=310  Identities=8%  Similarity=0.014  Sum_probs=212.0

Q ss_pred             EecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEc--CCceeeeecc--c
Q psy17243         33 AISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA--DNAQLLYSAL--G  108 (392)
Q Consensus        33 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~--~  108 (392)
                      .++|++.++++++.|++|.+||..+++++.++..+.. +..++|+|++++|++++.++.|.+||+  .+++.+..+.  .
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~  222 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  222 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence            3889999999999999999999999999999984333 889999999999999999999999999  7887766544  3


Q ss_pred             ceeEEEEeC----CCCEEEEecC-CCcEEEEeCCCCCCCCcceeee--------ccccceEEEEEEcCCCE-EEEeeCCC
Q psy17243        109 PSKCLTVTH----NMKYIVSGDG-DNSLRIWPTSPQTHKDDERFTV--------SHSEEITCFTVTWDSQY-LITGSRDM  174 (392)
Q Consensus       109 ~~~~~~~~~----~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~-l~~~~~dg  174 (392)
                      ....++++|    +++++++++. ++.|.+||..+.+....+....        .....+..+.++|++.. +++...++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g  302 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  302 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence            567899999    9999999885 8999999987544332222110        01237889999997654 56667789


Q ss_pred             cEEEEEcCCCeEEE--EEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc----cccceeEEEEcCC
Q psy17243        175 SLKVWQVVGGKLAQ--VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG----HLGCVTCVKLAGD  248 (392)
Q Consensus       175 ~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~d  248 (392)
                      .|.+||..+.+.+.  .+. +...+..++|+|.+..+++++..+++|.+||+.+++++..+..    |.+....+ ++|+
T Consensus       303 ~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~  380 (543)
T 1nir_A          303 KVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK  380 (543)
T ss_dssp             EEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT
T ss_pred             eEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC
Confidence            99999998765443  333 5667888999954444556666789999999999998887764    54433333 4666


Q ss_pred             -CeEEEEcC-CCCCCCCCCCccccccccccccceeEEEecc-CCcceeEEEeecccccceeEEEeeccccceecceeccC
Q psy17243        249 -GTVAMSDL-PPSRPAGPKRPLRRLLKKEVSLDTYTWQRKY-GHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNV  325 (392)
Q Consensus       249 -g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~  325 (392)
                       |.++++.. .+.                 .  ...|.... +|....                    -..++.......
T Consensus       381 ~g~~~~s~~~~d~-----------------~--V~v~d~~~~~~~~~~--------------------~~~v~~l~~~g~  421 (543)
T 1nir_A          381 YGPVWSTSHLGDG-----------------S--ISLIGTDPKNHPQYA--------------------WKKVAELQGQGG  421 (543)
T ss_dssp             TEEEEEEEBSSSS-----------------E--EEEEECCTTTCTTTB--------------------TSEEEEEECSCS
T ss_pred             CccEEEeccCCCc-----------------e--EEEEEeCCCCCchhc--------------------CeEEEEEEcCCC
Confidence             66666542 110                 0  11111111 000000                    000000111111


Q ss_pred             C--CCCCChhhhhhhcccC-------hHHHHHHhhCCCCCCcccccc------ccccccCccccccccCccCCCC
Q psy17243        326 G--SQGLGPEQAALAQSQH-------FDQLEALWNKKSPPRSRRFEH------SMSKQNSYSSRQHSVDTDELSS  385 (392)
Q Consensus       326 ~--~~~~s~dg~~la~s~~-------~d~~i~~Wd~~~~~~~~~~~~------~~~~~~~~~~~~fspdg~~l~~  385 (392)
                      +  .++|+|||++|+ +++       .+++|+|||+.+.+.......      .-....++..++|+|||+.|..
T Consensus       422 ~~~~v~~~pdg~~l~-v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~  495 (543)
T 1nir_A          422 GSLFIKTHPKSSHLY-VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF  495 (543)
T ss_dssp             CCCCEECCTTCCEEE-ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred             CceEEEcCCCCCcEE-EecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence            1  227999999999 444       378999999998887422110      0122455777999999998873

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=2.7e-26  Score=204.62  Aligned_cols=241  Identities=13%  Similarity=0.051  Sum_probs=189.8

Q ss_pred             eEEEEEC--CCccce--eeeccCCcCeeEEEecC--------------CCCeEEEEeCC------CeEEEEeCCCCceeE
Q psy17243          7 LVNVWQM--NSHELQ--STMEGHLNTVSCVAISP--------------NSIFAVSGSED------NTAKVWGLTLGSVVS   62 (392)
Q Consensus         7 ~i~vwd~--~~~~~~--~~~~~h~~~v~~~~~~~--------------~~~~l~~~~~d------g~v~iwd~~~~~~~~   62 (392)
                      .|++||+  .+++.+  ..+.+|...+..+++++              .+..++.++.+      +.|++||++ +....
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~  172 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQF  172 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCE
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCE
Confidence            9999999  888877  55888999898888875              15566666554      799999997 45567


Q ss_pred             EecccccceEEEEEecCCCEEEEEeCCC---eEEEEEcCCceeee--ecccceeEEEEeCCCCEEE-EecCCCc--EEEE
Q psy17243         63 TFKSHQSTILAVAVLSDSRRVVTSDKAG---VIAVWVADNAQLLY--SALGPSKCLTVTHNMKYIV-SGDGDNS--LRIW  134 (392)
Q Consensus        63 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~l~-~~~~d~~--i~~~  134 (392)
                      .+..|...+.+++|+|++++|++++.++   .|++||+.+++...  .+...+.+++|+|+++.|+ +++.++.  |++|
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~  252 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  252 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEE
Confidence            7778999999999999999999999885   99999999887643  3455788999999999888 5655554  9999


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-CC--cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEE
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DM--SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  211 (392)
                      |+.+...    .....+...+.+++|+|++++|++++. ++  .|++||+.+++. ..+..+...+..++|+ +++++|+
T Consensus       253 d~~~~~~----~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-pdG~~l~  326 (415)
T 2hqs_A          253 DLASGQI----RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVS-SDGKFMV  326 (415)
T ss_dssp             ETTTCCE----EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEEC-TTSSEEE
T ss_pred             ECCCCCE----EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEEC-CCCCEEE
Confidence            9975432    333457788999999999999888876 44  688889887764 4455577788999999 5667776


Q ss_pred             EecCC---CeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        212 SGSKD---SNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       212 ~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .++.+   ..|++||+.+++.. .+..+. .+.+++|+|||+.+++..
T Consensus       327 ~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s  372 (415)
T 2hqs_A          327 MVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSS  372 (415)
T ss_dssp             EEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEE
T ss_pred             EEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEE
Confidence            66653   58999999988764 455554 899999999999888864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=9.2e-27  Score=231.06  Aligned_cols=352  Identities=9%  Similarity=-0.006  Sum_probs=236.4

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC------CeEEEEeCCCCceeEEecccccce-------
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED------NTAKVWGLTLGSVVSTFKSHQSTI-------   71 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~v-------   71 (392)
                      ++.|++|++.+++ ...+..|...+.+++|||||++||+++.+      ..|.+|++.+++ ...+..|...+       
T Consensus        32 ~~~l~~~~~~gg~-~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~  109 (1045)
T 1k32_A           32 CDDLWEHDLKSGS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFT  109 (1045)
T ss_dssp             TTEEEEEETTTCC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECS
T ss_pred             CCcEEEEECCCCc-EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCccccccccc
Confidence            3689999998765 45677899999999999999999987643      479999998876 56777788888       


Q ss_pred             EEEEEecCCCEEEEEeCC------CeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecC------------CCcEEE
Q psy17243         72 LAVAVLSDSRRVVTSDKA------GVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDG------------DNSLRI  133 (392)
Q Consensus        72 ~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------d~~i~~  133 (392)
                      ..++|+|||+.+++++.+      ..|..|++.+++.......+...+.|+| | +++++..            +....+
T Consensus       110 ~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~l  187 (1045)
T 1k32_A          110 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKI  187 (1045)
T ss_dssp             EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEE
T ss_pred             ccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC-C-EEEEeccCCCccccccccCCCcCCE
Confidence            999999999977777644      4688889888876554445566778999 7 8877642            234556


Q ss_pred             EeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC-CeEEEEEecCCCceeEEEEecCCCcEEEE
Q psy17243        134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG-GKLAQVLVGHTDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  212 (392)
                      |.....   ........|...+.++.|+++ .++++++.++.+.+|.+.. +.....+..|. .+...+|+ +++..|+.
T Consensus       188 w~~~~~---~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~S-pDG~~la~  261 (1045)
T 1k32_A          188 WIEVNS---GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLN-TDGRRILF  261 (1045)
T ss_dssp             EEEEET---TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEE-ESSSCEEE
T ss_pred             EEECCC---CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEc-CCCCEEEE
Confidence            643321   222233678899999999988 6777788889999998753 44455555554 46677999 56666666


Q ss_pred             ecCCCeEEEEECCCCceeeeecc-----------cccceeEEEEc-CCCeEEEEcCCCCCCCCCCCccccccccccccce
Q psy17243        213 GSKDSNLIVWDMETGGEEHFLAG-----------HLGCVTCVKLA-GDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDT  280 (392)
Q Consensus       213 ~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (392)
                      + .++.|++||+... .+..+..           |...+.+++|+ |||+.+++.... .       +..........  
T Consensus       262 ~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~-~-------i~~~~~~~~~~--  329 (1045)
T 1k32_A          262 S-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRG-Q-------AFIQDVSGTYV--  329 (1045)
T ss_dssp             E-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETT-E-------EEEECTTSSBE--
T ss_pred             E-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcC-E-------EEEEcCCCCce--
Confidence            6 4899999999543 3445544           34579999999 999988876411 0       00000000000  


Q ss_pred             eEEEeccCCcceeEEEeecccccceeEEEeecccccee-cceec------cCCC------CCCChhhhhhhcccChHHHH
Q psy17243        281 YTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISK-IPIKD------NVGS------QGLGPEQAALAQSQHFDQLE  347 (392)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~-~~~~~------~~~~------~~~s~dg~~la~s~~~d~~i  347 (392)
                         .....+..  ......... +++.++.++.+..+. +|...      ..++      .+|||||++|| +++.|+.|
T Consensus       330 ---~~~~~~~~--~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la-~~~~~~~v  402 (1045)
T 1k32_A          330 ---LKVPEPLR--IRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAV-VANDRFEI  402 (1045)
T ss_dssp             ---EECSCCSC--EEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEE-EEETTSEE
T ss_pred             ---EEccCCCc--ceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEE-EECCCCeE
Confidence               00111111  011222333 566666666655444 44321      1122      28999999999 77888999


Q ss_pred             HHhhCCCCCCccccccccccccCccccccccCccCCCCccc
Q psy17243        348 ALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVD  388 (392)
Q Consensus       348 ~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~  388 (392)
                      ++||+.+++.... ..  .+...+..++|||||++||+++.
T Consensus       403 ~~~d~~tg~~~~~-~~--~~~~~v~~~~~SpDG~~la~~~~  440 (1045)
T 1k32_A          403 MTVDLETGKPTVI-ER--SREAMITDFTISDNSRFIAYGFP  440 (1045)
T ss_dssp             EEEETTTCCEEEE-EE--CSSSCCCCEEECTTSCEEEEEEE
T ss_pred             EEEECCCCceEEe-cc--CCCCCccceEECCCCCeEEEEec
Confidence            9999988765221 11  23445667999999999986654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=7e-25  Score=189.99  Aligned_cols=251  Identities=12%  Similarity=0.058  Sum_probs=189.0

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeC-CCeEEEEeCCCCce-eEEecccccceEEEEEecC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSE-DNTAKVWGLTLGSV-VSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~   79 (392)
                      ++.++.|.+||..+++....+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..+..+..+++|+|+
T Consensus        16 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d   94 (331)
T 3u4y_A           16 EQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPD   94 (331)
T ss_dssp             EGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTT
T ss_pred             ecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCC
Confidence            4678999999999999988887777777 9999999997766655 89999999999987 7777766666666999999


Q ss_pred             CCEEEEEeCCC---eEEEEEcCCceeeeecc--cceeEEEEeCCCCEEEEe-cCCCc-EEEEeCCCCCCCCcc-eeeecc
Q psy17243         80 SRRVVTSDKAG---VIAVWVADNAQLLYSAL--GPSKCLTVTHNMKYIVSG-DGDNS-LRIWPTSPQTHKDDE-RFTVSH  151 (392)
Q Consensus        80 ~~~l~~~~~d~---~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-~~d~~-i~~~d~~~~~~~~~~-~~~~~~  151 (392)
                      ++++++...++   .|.+||+.+++.+....  ....+++|+|++++++++ ..++. |.+|++......... ......
T Consensus        95 g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  174 (331)
T 3u4y_A           95 DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG  174 (331)
T ss_dssp             SSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS
T ss_pred             CCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC
Confidence            99999555553   89999999998766543  356799999999866655 45588 999998743222111 112234


Q ss_pred             ccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeE---EEEEecCCCceeEEEEecCCCc-EEEEecCCCeEEEEECCC
Q psy17243        152 SEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKL---AQVLVGHTDHVSCVAVAVTNKS-LVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  226 (392)
                      ......++|+|+++++++++ .++.|.+||+.+++.   +..+.. ...+..++|+ ++++ ++++...++.|.+||+.+
T Consensus       175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~s-pdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVS-RDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEEC-TTSSEEEEECSSEEEEEEEETTT
T ss_pred             CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEEC-CCCCEEEEEEcCCCEEEEEECCC
Confidence            55679999999999665554 688999999998887   777764 4667889999 5555 445555688999999998


Q ss_pred             Cce--eeeeccc----cc---ceeEEEEcCCCeEEEEc
Q psy17243        227 GGE--EHFLAGH----LG---CVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       227 ~~~--~~~~~~~----~~---~v~~~~~~~dg~~~~~~  255 (392)
                      ++.  +..+..+    ..   ....++|+|||+.++..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  290 (331)
T 3u4y_A          253 GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS  290 (331)
T ss_dssp             TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred             CceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence            876  3333222    22   23568999999987654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=1.2e-25  Score=215.99  Aligned_cols=243  Identities=8%  Similarity=-0.002  Sum_probs=189.0

Q ss_pred             eEEEEECCCccceeeeccCCc------------------------CeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc--e
Q psy17243          7 LVNVWQMNSHELQSTMEGHLN------------------------TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS--V   60 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~------------------------~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~   60 (392)
                      .|++||+.+++....+..+..                        .|.+++|+|||++|++++. +.|.+||+.++.  .
T Consensus        65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~  143 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAA  143 (741)
T ss_dssp             EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTS
T ss_pred             EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcce
Confidence            899999999987777665433                        3899999999999999886 999999999883  4


Q ss_pred             eEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccc-------------------eeEEEEeCCCCE
Q psy17243         61 VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGP-------------------SKCLTVTHNMKY  121 (392)
Q Consensus        61 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~  121 (392)
                      ...+..+...+..++|+|||++|+.++ ++.|++||+.+++........                   +..+.|+|++++
T Consensus       144 ~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~  222 (741)
T 2ecf_A          144 VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA  222 (741)
T ss_dssp             CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC
T ss_pred             EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCE
Confidence            455666888899999999999999887 468999999988765433221                   367999999999


Q ss_pred             EEEecCCC---------------------------------cEEEEeCCC-CCCCCcceeeeccccceEEEEEEcCCCEE
Q psy17243        122 IVSGDGDN---------------------------------SLRIWPTSP-QTHKDDERFTVSHSEEITCFTVTWDSQYL  167 (392)
Q Consensus       122 l~~~~~d~---------------------------------~i~~~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  167 (392)
                      |++++.|+                                 .|.+||+.+ ..... ......+...+..++| ||+++|
T Consensus       223 l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~-pDg~~l  300 (741)
T 2ecf_A          223 IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW-IDLGKEQDIYLARVNW-RDPQHL  300 (741)
T ss_dssp             EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE-ECCCSCSSEEEEEEEE-EETTEE
T ss_pred             EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE-ecCCCCcceEEEEEEe-CCCCEE
Confidence            99987765                                 788889875 43211 1111146678999999 999999


Q ss_pred             EEeeC-----CCcEEEEEcCCCeEEEEEecCCC----ceeEEEEecCCCcEEEEecCCCeEEEEECC-CCceeeeecccc
Q psy17243        168 ITGSR-----DMSLKVWQVVGGKLAQVLVGHTD----HVSCVAVAVTNKSLVVSGSKDSNLIVWDME-TGGEEHFLAGHL  237 (392)
Q Consensus       168 ~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~  237 (392)
                      ++++.     +..|++||+.+++....+..+..    .+..++|+ ++++++++++.||.++||.++ +++ ...+..+.
T Consensus       301 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~  378 (741)
T 2ecf_A          301 SFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL-DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN  378 (741)
T ss_dssp             EEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC-TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS
T ss_pred             EEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC-CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc
Confidence            87654     56899999999988777765543    45688999 566688999999988888765 345 77777788


Q ss_pred             cceeEE-EEcCCCeEEEEc
Q psy17243        238 GCVTCV-KLAGDGTVAMSD  255 (392)
Q Consensus       238 ~~v~~~-~~~~dg~~~~~~  255 (392)
                      ..+..+ .|+|||+.++..
T Consensus       379 ~~v~~~~~~s~dg~~l~~~  397 (741)
T 2ecf_A          379 WSVDELLAVDEKAGLAYFR  397 (741)
T ss_dssp             SCEEEEEEEETTTTEEEEE
T ss_pred             eEEEeEeEEeCCCCEEEEE
Confidence            888887 599999876543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=5.2e-24  Score=186.16  Aligned_cols=248  Identities=12%  Similarity=0.051  Sum_probs=196.0

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEE-EEeCCCeEEEEeCCCCceeEEecccccc---------eEEE
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAV-SGSEDNTAKVWGLTLGSVVSTFKSHQST---------ILAV   74 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------v~~~   74 (392)
                      ++.|.+||..+++.+..+.. ...+..++|+|++++++ +...++.|.+||.++++.+..+..+...         +.++
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL  146 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEE
T ss_pred             CccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceE
Confidence            78999999999998888874 45578999999998555 4556799999999999998888754322         7889


Q ss_pred             EEecCCCEEEEEe--CCCeEEEEEcCCceeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeee
Q psy17243         75 AVLSDSRRVVTSD--KAGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV  149 (392)
Q Consensus        75 ~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  149 (392)
                      +|+|+++++++++  .++.|.+||+.+++.+....   .....+.++|+++++++++.++.|.+||..+.+.........
T Consensus       147 ~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~  226 (353)
T 3vgz_A          147 VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD  226 (353)
T ss_dssp             EEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             EECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC
Confidence            9999999888776  47899999999998877654   246789999999999999999999999997543332222111


Q ss_pred             -ccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        150 -SHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       150 -~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                       .+...+..++|+|+++++++++. ++.|.+||+.+++.+..+....  ...++|+|.+..++++...++.|.+||..++
T Consensus       227 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          227 DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence             24556788999999998777765 4999999999999888776543  2578999554446666667999999999999


Q ss_pred             ceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        228 GEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       228 ~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +.+..+... ..+.+++|+|||+.++...
T Consensus       305 ~~~~~~~~~-~~~~~~~~s~dg~~l~v~~  332 (353)
T 3vgz_A          305 KVVKTFDTP-THPNSLALSADGKTLYVSV  332 (353)
T ss_dssp             EEEEEEECC-SEEEEEEECTTSCEEEEEE
T ss_pred             eEEEEEecC-CCCCeEEEcCCCCEEEEEE
Confidence            988877643 4679999999999666543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=1.9e-25  Score=221.63  Aligned_cols=245  Identities=8%  Similarity=0.059  Sum_probs=195.4

Q ss_pred             CccCCeEEEEECCC-ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc-----------ccc
Q psy17243          2 GGMDCLVNVWQMNS-HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS-----------HQS   69 (392)
Q Consensus         2 g~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------~~~   69 (392)
                      ++.|+.++||.+.. +.....+..|. .+...+|+|+|++|+++ .++.|.+|++...+ +..+..           |..
T Consensus       220 ~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~  296 (1045)
T 1k32_A          220 TDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIP  296 (1045)
T ss_dssp             ECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECG
T ss_pred             EeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCccccccccccccc
Confidence            34578888888653 44556666565 47788999999999888 48999999995443 335554           344


Q ss_pred             ceEEEEEe-cCCCEEEEEeCCCeEEEEEcCCceeee--eccc-ceeEEEEeCCCCEEEEecCCCcEE-EEeCCCCCCCCc
Q psy17243         70 TILAVAVL-SDSRRVVTSDKAGVIAVWVADNAQLLY--SALG-PSKCLTVTHNMKYIVSGDGDNSLR-IWPTSPQTHKDD  144 (392)
Q Consensus        70 ~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~-~~~~~~~~~~~~~l~~~~~d~~i~-~~d~~~~~~~~~  144 (392)
                      .+.+++|+ |+|+.|++++ ++.+.+|++.+++...  .... .+..+.|+ +++.++.++.++.+. +|++....   .
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~---~  371 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK---A  371 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC---E
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC---c
Confidence            78999999 9999998887 8899999998876543  2233 66789999 999999988888888 89986432   2


Q ss_pred             ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCC--------
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKD--------  216 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------  216 (392)
                      .... .+...+..++|+||+++|++++.++.|++||+.+++....+.+|...+..++|+ +++++|++++.+        
T Consensus       372 ~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S-pDG~~la~~~~~~~~~~~~~  449 (1045)
T 1k32_A          372 EKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS-DNSRFIAYGFPLKHGETDGY  449 (1045)
T ss_dssp             EECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC-TTSCEEEEEEEECSSTTCSC
T ss_pred             eEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC-CCCCeEEEEecCccccccCC
Confidence            2222 667889999999999999999999999999999998888887899999999999 677777776654        


Q ss_pred             --CeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        217 --SNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       217 --g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                        +.|++||+.+++ +..+..|...+..++|+|||+.+++...
T Consensus       450 ~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          450 VMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             CEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             CCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence              489999999877 6677778888999999999998887664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=1.1e-24  Score=189.66  Aligned_cols=252  Identities=13%  Similarity=0.178  Sum_probs=179.6

Q ss_pred             CccCCeEEEEECC-Cc--cceeeeccCCcCeeEEEecCCCCeEEEEeCC-CeEEEEeCC--CCc--eeEEecccccceEE
Q psy17243          2 GGMDCLVNVWQMN-SH--ELQSTMEGHLNTVSCVAISPNSIFAVSGSED-NTAKVWGLT--LGS--VVSTFKSHQSTILA   73 (392)
Q Consensus         2 g~~dg~i~vwd~~-~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-g~v~iwd~~--~~~--~~~~~~~~~~~v~~   73 (392)
                      ++.|+.|++|++. ++  +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|+++  +++  .+..+..+. .+..
T Consensus        11 ~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~   88 (343)
T 1ri6_A           11 SPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTH   88 (343)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSE
T ss_pred             CCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcE
Confidence            3678999999995 33  333333 477889999999999988888876 999999997  554  334454333 7889


Q ss_pred             EEEecCCCEEEEEeC-CCeEEEEEcC---Cceeeeec--ccceeEEEEeCCCCEEEEec-CCCcEEEEeCCCCCCCCc-c
Q psy17243         74 VAVLSDSRRVVTSDK-AGVIAVWVAD---NAQLLYSA--LGPSKCLTVTHNMKYIVSGD-GDNSLRIWPTSPQTHKDD-E  145 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~-d~~i~iwd~~---~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~-~  145 (392)
                      ++|+|++++|++++. ++.|.+||+.   ..+.+...  ...+.+++|+|+++++++++ .++.|.+||+........ .
T Consensus        89 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  168 (343)
T 1ri6_A           89 ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD  168 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence            999999998877765 8899999994   33343333  23577899999999888877 899999999975221111 1


Q ss_pred             --eeeeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCC--CeE--EEEEec---C---CCceeEEEEecCCCcEEEE
Q psy17243        146 --RFTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVG--GKL--AQVLVG---H---TDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       146 --~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~~---~---~~~v~~~~~~~~~~~~l~~  212 (392)
                        .........+..++|+|+++++++++ .++.|.+||+..  ++.  ...+..   .   ...+..++|+|.+..++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~  248 (343)
T 1ri6_A          169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC  248 (343)
T ss_dssp             EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred             ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEE
Confidence              22223345788999999999776555 789999999953  332  223321   1   2346689999544445556


Q ss_pred             ecCCCeEEEEECC--C--CceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        213 GSKDSNLIVWDME--T--GGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       213 ~~~dg~i~iwd~~--~--~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +..++.|.+||+.  +  .+.+..+..+.. +..++|+|||++++...
T Consensus       249 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          249 DRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             ETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEEC
T ss_pred             ecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEec
Confidence            7789999999998  2  334445554444 88999999999777764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=6e-26  Score=216.82  Aligned_cols=246  Identities=9%  Similarity=0.014  Sum_probs=177.9

Q ss_pred             ccCCeEEEEECCCccce-eeeccCC-----------------cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEe
Q psy17243          3 GMDCLVNVWQMNSHELQ-STMEGHL-----------------NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF   64 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~-~~~~~h~-----------------~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~   64 (392)
                      +.|+ | +||+.+++.+ ..+..|.                 ..|.+++|+|+ +.++.+ .++.|++||+.+++.....
T Consensus        42 ~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~  117 (706)
T 2z3z_A           42 EGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLF  117 (706)
T ss_dssp             ETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             eCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEcc
Confidence            3455 8 9999999873 4444443                 56999999999 666555 3599999999988765444


Q ss_pred             cccccceEEEEEecCCCEEEEEeCCCeEEEEEcCC-----ceeeeeccc--c---------------eeEEEEeCCCCEE
Q psy17243         65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADN-----AQLLYSALG--P---------------SKCLTVTHNMKYI  122 (392)
Q Consensus        65 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~--~---------------~~~~~~~~~~~~l  122 (392)
                       .+...+.+++|+|+|+.|+++ .++.|++||+.+     ++.......  .               +.++.|+|++++|
T Consensus       118 -~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~l  195 (706)
T 2z3z_A          118 -DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCL  195 (706)
T ss_dssp             -CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEE
T ss_pred             -CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEE
Confidence             467778899999999999985 679999999998     765442221  1               4789999999999


Q ss_pred             EEec---------------------------------CCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEE
Q psy17243        123 VSGD---------------------------------GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLIT  169 (392)
Q Consensus       123 ~~~~---------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  169 (392)
                      ++++                                 .+..|++||+.++..... .....+...+.+++|+||+++|++
T Consensus       196 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~  274 (706)
T 2z3z_A          196 AFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL-QTGEPKEKFLTNLSWSPDENILYV  274 (706)
T ss_dssp             EEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC-CCCSCTTCEEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee-ccCCCCceeEeeEEEECCCCEEEE
Confidence            9987                                 446799999975432211 111245677899999999999998


Q ss_pred             eeCCC-----cEEEEEcCCCeEEEEEe-c-CCC---ceeEEEEec-CCCcEEEEecCCCeEEEEECC-CCceeeeecccc
Q psy17243        170 GSRDM-----SLKVWQVVGGKLAQVLV-G-HTD---HVSCVAVAV-TNKSLVVSGSKDSNLIVWDME-TGGEEHFLAGHL  237 (392)
Q Consensus       170 ~~~dg-----~i~i~d~~~~~~~~~~~-~-~~~---~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~  237 (392)
                      ++.++     .|++||+.+++....+. . +..   .+..++|+| .++.++++++.|+.++||+++ +++.+..+..+.
T Consensus       275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~  354 (706)
T 2z3z_A          275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE  354 (706)
T ss_dssp             EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred             EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence            87765     89999999983333332 2 222   246789994 177899999999999999876 667777777777


Q ss_pred             cceeE-EEEcCCCeEEEEc
Q psy17243        238 GCVTC-VKLAGDGTVAMSD  255 (392)
Q Consensus       238 ~~v~~-~~~~~dg~~~~~~  255 (392)
                      ..+.. ++|+|||+.++..
T Consensus       355 ~~v~~~~~~spdg~~l~~~  373 (706)
T 2z3z_A          355 WEVTNFAGFDPKGTRLYFE  373 (706)
T ss_dssp             SCEEEEEEECTTSSEEEEE
T ss_pred             eEEEeeeEEcCCCCEEEEE
Confidence            77776 7899998876653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=4.7e-25  Score=187.64  Aligned_cols=207  Identities=8%  Similarity=0.045  Sum_probs=155.9

Q ss_pred             EEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCC-ceeeeecc----cceeEEEEeC
Q psy17243         43 SGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADN-AQLLYSAL----GPSKCLTVTH  117 (392)
Q Consensus        43 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~----~~~~~~~~~~  117 (392)
                      .++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|++||+.+ ++......    ..+.+++|+|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            45678999999999888764 445889999999999999999987 78999999998 76654432    3567899999


Q ss_pred             CCCEEEEec--CCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEE-EeeCCCcEEEEEcCC-CeEEEEEecC
Q psy17243        118 NMKYIVSGD--GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVG-GKLAQVLVGH  193 (392)
Q Consensus       118 ~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~~~~~  193 (392)
                      ++++|+++.  .++...+|.+......  ... ......+..++|+|++++|+ ++..++.+.+|++.. ......+..+
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~--~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~  171 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGT--PRL-MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG  171 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCC--CEE-CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCc--eEE-eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence            999999998  3345555554321111  111 22334588899999999877 777899999998632 2344566678


Q ss_pred             CCceeEEEEecCCCcEEE-EecCCCeEEEEECC-CCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        194 TDHVSCVAVAVTNKSLVV-SGSKDSNLIVWDME-TGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       194 ~~~v~~~~~~~~~~~~l~-~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      ...+.+++|+| ++.+|+ ++..++.+++|++. .+..+..+..|...+..++|+|||++++..
T Consensus       172 ~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          172 EGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             SSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred             CCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence            88999999994 555554 55568999999886 566677777788889999999999988875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=1.9e-24  Score=188.86  Aligned_cols=206  Identities=8%  Similarity=0.013  Sum_probs=161.4

Q ss_pred             CCcCeeEEEecCCCCeEEEEeC-------CCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEE-eCCCeEEEEE
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSE-------DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTS-DKAGVIAVWV   96 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~-------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd   96 (392)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.+..+.. ...+..++|+|++++++++ ..++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            4467889999999998888764       56899999999998888874 4457889999999966555 5579999999


Q ss_pred             cCCceeeeeccc------------ceeEEEEeCCCCEEEEec--CCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc
Q psy17243         97 ADNAQLLYSALG------------PSKCLTVTHNMKYIVSGD--GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW  162 (392)
Q Consensus        97 ~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  162 (392)
                      +.+++.+.....            ....+.++|++++++++.  .++.|.+||..+.+.   ......+...+..++|+|
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~s~  194 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL---KTAIQNTGKMSTGLALDS  194 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE---EEEECCCCTTCCCCEEET
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce---EEEecCCCCccceEEECC
Confidence            999987665433            157899999999888776  478899999974332   222222445578899999


Q ss_pred             CCCEEEEeeCCCcEEEEEcCCCeEEEEEec----CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec
Q psy17243        163 DSQYLITGSRDMSLKVWQVVGGKLAQVLVG----HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA  234 (392)
Q Consensus       163 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  234 (392)
                      +++++++++.++.|.+||+.+++.+..+..    +...+..++|+|.+..++++...++.|.+||+.+++.+..+.
T Consensus       195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            999999999999999999999998877764    455678899995544455555566999999999888766554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=2e-24  Score=187.13  Aligned_cols=217  Identities=8%  Similarity=0.054  Sum_probs=159.3

Q ss_pred             EecCCCC-eEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeC-CCeEEEEEcCCcee-eeecc--
Q psy17243         33 AISPNSI-FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK-AGVIAVWVADNAQL-LYSAL--  107 (392)
Q Consensus        33 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~-~~~~~--  107 (392)
                      .|.++++ .+++++.++.|.+||.++++.+..+..+...+ .++|+|+++++++++. ++.|.+||+.+++. .....  
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            4555544 46778889999999999999988887666667 9999999997777665 88999999998876 43322  


Q ss_pred             -cceeEEEEeCCCCEEEEecCCC---cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEe-eCCCc-EEEEEc
Q psy17243        108 -GPSKCLTVTHNMKYIVSGDGDN---SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITG-SRDMS-LKVWQV  181 (392)
Q Consensus       108 -~~~~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~i~d~  181 (392)
                       .+..+++++|++++++++..++   .|.+||+.+.+.   ... ........+++|+|++++++++ ..++. |.+|++
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~---~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF---IST-IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE---EEE-EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe---EEE-EECCCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence             2334499999999999666553   899999975432   222 2344567899999999866555 55578 999998


Q ss_pred             CCCeEE----EEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce---eeeecccccceeEEEEcCCCeEEEE
Q psy17243        182 VGGKLA----QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE---EHFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       182 ~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                      .....+    ............++|+|.+..+++++..++.|++||+.+++.   +..+.. ...+..++|+|||++++.
T Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v  237 (331)
T 3u4y_A          159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYV  237 (331)
T ss_dssp             CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEE
T ss_pred             CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEE
Confidence            754332    122234456789999954444666777799999999999888   766664 466789999999997665


Q ss_pred             c
Q psy17243        255 D  255 (392)
Q Consensus       255 ~  255 (392)
                      .
T Consensus       238 ~  238 (331)
T 3u4y_A          238 L  238 (331)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=2.2e-24  Score=187.62  Aligned_cols=297  Identities=10%  Similarity=0.096  Sum_probs=187.0

Q ss_pred             eEEEEeCCCeEEEEeCC-CC--ceeEEecccccceEEEEEecCCCEEEEEeCC-CeEEEEEcC--Ccee--eeec--ccc
Q psy17243         40 FAVSGSEDNTAKVWGLT-LG--SVVSTFKSHQSTILAVAVLSDSRRVVTSDKA-GVIAVWVAD--NAQL--LYSA--LGP  109 (392)
Q Consensus        40 ~l~~~~~dg~v~iwd~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~--~~~~--~~~~--~~~  109 (392)
                      .+++++.|+.|++|+++ ++  +.+..+ .+...+.+++|+|++++|++++.+ +.|.+|++.  +++.  +...  ...
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCC
Confidence            34455789999999985 33  233333 367788999999999999988887 999999997  4442  2222  236


Q ss_pred             eeEEEEeCCCCEEEEecC-CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCC-CeE
Q psy17243        110 SKCLTVTHNMKYIVSGDG-DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVG-GKL  186 (392)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~  186 (392)
                      +..++|+|+++++++++. ++.|.+||+..+....... .......+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD-VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE-EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccc-cccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            788999999998877654 8889999995221112222 223445688999999999888877 889999999987 544


Q ss_pred             EE----EEec-CCCceeEEEEecCCCcEEEEecCCCeEEEEECCC--Cce--eeeec---cc---ccceeEEEEcCCCeE
Q psy17243        187 AQ----VLVG-HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET--GGE--EHFLA---GH---LGCVTCVKLAGDGTV  251 (392)
Q Consensus       187 ~~----~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~--~~~~~---~~---~~~v~~~~~~~dg~~  251 (392)
                      ..    .+.. ....+..++|+|.+..+++++..++.|.+|++..  ++.  ...+.   ..   ...+..++|+|||++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  244 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence            32    2232 3347888999954444556666899999999953  432  22222   11   235668999999987


Q ss_pred             EEEcC-CCCCCCCCCCccccccccccccceeEEEec--cCCcceeEEEeecccccceeEEEeeccccceecceeccCCCC
Q psy17243        252 AMSDL-PPSRPAGPKRPLRRLLKKEVSLDTYTWQRK--YGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQ  328 (392)
Q Consensus       252 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~  328 (392)
                      ++... .+.                   ....|...  .+....               +..        +.........
T Consensus       245 l~v~~~~~~-------------------~i~v~d~~~~~~~~~~---------------~~~--------~~~~~~~~~~  282 (343)
T 1ri6_A          245 LYACDRTAS-------------------LITVFSVSEDGSVLSK---------------EGF--------QPTETQPRGF  282 (343)
T ss_dssp             EEEEETTTT-------------------EEEEEEECTTSCCEEE---------------EEE--------EECSSSCCCE
T ss_pred             EEEEecCCC-------------------EEEEEEEcCCCCceEE---------------eee--------ecCCCccceE
Confidence            76432 110                   11122221  000000               000        0000112233


Q ss_pred             CCChhhhhhhcccChHHHHHHhhCC--CCCCccccccccccccCccccccccCccC
Q psy17243        329 GLGPEQAALAQSQHFDQLEALWNKK--SPPRSRRFEHSMSKQNSYSSRQHSVDTDE  382 (392)
Q Consensus       329 ~~s~dg~~la~s~~~d~~i~~Wd~~--~~~~~~~~~~~~~~~~~~~~~~fspdg~~  382 (392)
                      +|+|||++|+++...|+.|++|++.  ++.. .. ...+........++|.|+-+.
T Consensus       283 ~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~-~~-~~~~~~g~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          283 NVDHSGKYLIAAGQKSHHISVYEIVGEQGLL-HE-KGRYAVGQGPMWVVVNAHEGG  336 (343)
T ss_dssp             EECTTSSEEEEECTTTCEEEEEEEETTTTEE-EE-EEEEECSSSCCEEEEEEEC--
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEcCCCcee-eE-ccccccCCCCeeEEEEcccCC
Confidence            7999999988666678999999654  3332 11 223333345666888887553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=1.2e-22  Score=177.09  Aligned_cols=252  Identities=11%  Similarity=0.096  Sum_probs=176.2

Q ss_pred             ccCCeEEEEECC--Ccccee-eeccCCcCeeEEEecCCCCeEEEEeC---CCeEEEEeCCCCc--eeEEecccccceEEE
Q psy17243          3 GMDCLVNVWQMN--SHELQS-TMEGHLNTVSCVAISPNSIFAVSGSE---DNTAKVWGLTLGS--VVSTFKSHQSTILAV   74 (392)
Q Consensus         3 ~~dg~i~vwd~~--~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~--~~~~~~~~~~~v~~~   74 (392)
                      +.++.|.+|++.  +++... ....+...+..++|+|+++ |++++.   ++.|.+|++.+++  .+..+..+...+..+
T Consensus        13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~   91 (347)
T 3hfq_A           13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV   91 (347)
T ss_dssp             SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred             CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence            456678888764  455433 2334567788999999999 555544   6899999997775  344545567788999


Q ss_pred             EEecCCCEEEEEe-CCCeEEEEEcCC-c--eeeeecc------------cceeEEEEeCCCCEEEEecCCCcEEEEeCCC
Q psy17243         75 AVLSDSRRVVTSD-KAGVIAVWVADN-A--QLLYSAL------------GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSP  138 (392)
Q Consensus        75 ~~~~~~~~l~~~~-~d~~i~iwd~~~-~--~~~~~~~------------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  138 (392)
                      +|+|++++|++++ .++.+.+|++.. +  +.+....            ..+.+++++|+++.+++...++.|.+|++..
T Consensus        92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~  171 (347)
T 3hfq_A           92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD  171 (347)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence            9999999998888 679999999963 2  2232221            1366799999999666667788999999973


Q ss_pred             CCCCCcc-eeeeccccceEEEEEEcCCCEEEE-eeCCCcEEEEEcCC--CeE--EEEEecCC------CceeEEEEecCC
Q psy17243        139 QTHKDDE-RFTVSHSEEITCFTVTWDSQYLIT-GSRDMSLKVWQVVG--GKL--AQVLVGHT------DHVSCVAVAVTN  206 (392)
Q Consensus       139 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~------~~v~~~~~~~~~  206 (392)
                      ....... .........+..++|+|+++++++ ...++.|.+|++..  ++.  +..+....      ..+..++|+ ++
T Consensus       172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s-pd  250 (347)
T 3hfq_A          172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS-HD  250 (347)
T ss_dssp             TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC-TT
T ss_pred             CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC-CC
Confidence            2111111 112223346788999999996666 45688999999874  543  23333222      347889999 55


Q ss_pred             CcEE-EEecCCCeEEEEECCC---CceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        207 KSLV-VSGSKDSNLIVWDMET---GGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       207 ~~~l-~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +++| ++...++.|.+|++..   .+.+..+..+...+..++|+|||++++...
T Consensus       251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEE
Confidence            6544 6667789999999973   244556666666789999999999777653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=4.6e-25  Score=211.12  Aligned_cols=220  Identities=8%  Similarity=0.020  Sum_probs=165.2

Q ss_pred             eEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccccc---ceEEEEEecCCCEEEEEeC---------CCeEEEEEc
Q psy17243         30 SCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQS---TILAVAVLSDSRRVVTSDK---------AGVIAVWVA   97 (392)
Q Consensus        30 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~   97 (392)
                      ..++|+|++++++++ .|+.|++||+.+++....+..+..   .+.+++|+|||++|++++.         ++.|++||+
T Consensus        19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            378999999765554 699999999999998877775544   3899999999999998876         789999999


Q ss_pred             CCceee--eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccc-----------------eEEE
Q psy17243         98 DNAQLL--YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEE-----------------ITCF  158 (392)
Q Consensus        98 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-----------------v~~~  158 (392)
                      .+++.+  ..+...+..++|+|+|+.|+.+. ++.|++|++.++.....  ...++...                 ..++
T Consensus        98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeEcccccceeeeecccCcccE
Confidence            998873  33446788899999999999885 78999999975433211  11122121                 2489


Q ss_pred             EEEcCCCEEEEeeCCC----------------------------------cEEEEEcCCCeEE---E-----EEecCCCc
Q psy17243        159 TVTWDSQYLITGSRDM----------------------------------SLKVWQVVGGKLA---Q-----VLVGHTDH  196 (392)
Q Consensus       159 ~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~---~-----~~~~~~~~  196 (392)
                      +|+|||++|++++.|.                                  .|++||+.+++..   .     .+.+|...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            9999999999887552                                  7889999887642   1     12357778


Q ss_pred             eeEEEEecCCCcEEEEecCC----CeEEEEE----CCCCceeeee----ccccccee-----EEEEcCCCeEEEE
Q psy17243        197 VSCVAVAVTNKSLVVSGSKD----SNLIVWD----METGGEEHFL----AGHLGCVT-----CVKLAGDGTVAMS  254 (392)
Q Consensus       197 v~~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~v~-----~~~~~~dg~~~~~  254 (392)
                      +..++|+| ++.++++....    ..|.+||    +.+++....+    ..|...+.     .+.|+|||+.++.
T Consensus       255 ~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          255 FSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             EEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             EEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence            99999995 47777764322    3488999    8877766555    46666676     8899999996554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=1.8e-22  Score=175.02  Aligned_cols=231  Identities=11%  Similarity=0.029  Sum_probs=178.8

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCc--CeeEEEecCCCCeE-EEEeCCCeEEEEeCCCCceeEEeccc-----ccceE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLN--TVSCVAISPNSIFA-VSGSEDNTAKVWGLTLGSVVSTFKSH-----QSTIL   72 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~v~   72 (392)
                      +++.++.|++||+.+++.+..+.....  .+..++|+|+++++ +++..++.|.+||+.+++.+..+...     ...+.
T Consensus         6 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~   85 (337)
T 1pby_B            6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF   85 (337)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred             EcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc
Confidence            356799999999999998888763322  58899999999765 45566789999999999988776632     22677


Q ss_pred             EEEEecCCCEEEEEe------------CCCeEEEEEcCCceeeeecc--cceeEEEEeCCCCEEEEecCCCcEEEEeCCC
Q psy17243         73 AVAVLSDSRRVVTSD------------KAGVIAVWVADNAQLLYSAL--GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSP  138 (392)
Q Consensus        73 ~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  138 (392)
                      .++|+|++++++++.            .++.|.+||+.+++.+....  ..+..++++|++++++++  ++.|.+||+.+
T Consensus        86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~  163 (337)
T 1pby_B           86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEA  163 (337)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred             ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence            899999999998886            67999999999987765543  356788999999988888  68899999875


Q ss_pred             CCCCCcc---------------------------------------------------ee------------eeccccce
Q psy17243        139 QTHKDDE---------------------------------------------------RF------------TVSHSEEI  155 (392)
Q Consensus       139 ~~~~~~~---------------------------------------------------~~------------~~~~~~~v  155 (392)
                      .+.....                                                   ..            ...+...+
T Consensus       164 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  243 (337)
T 1pby_B          164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY  243 (337)
T ss_dssp             TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCce
Confidence            4221000                                                   00            00112345


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      .+++|+|++++++++  ++.|.+||+.+++.+..+.. ...+.+++|+ +++++|++++.++.|++||+.+++.+..+..
T Consensus       244 ~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          244 FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVS-TDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEEC-TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             eeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEEC-CCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            678999999999988  68999999999998887764 3567899999 5667777778899999999999998887765


Q ss_pred             cc
Q psy17243        236 HL  237 (392)
Q Consensus       236 ~~  237 (392)
                      +.
T Consensus       320 ~~  321 (337)
T 1pby_B          320 PG  321 (337)
T ss_dssp             GG
T ss_pred             CC
Confidence            43

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.1e-22  Score=194.35  Aligned_cols=248  Identities=8%  Similarity=0.043  Sum_probs=187.2

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC-----CceeEEecccccc--------
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL-----GSVVSTFKSHQST--------   70 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~--------   70 (392)
                      .++.|++||+.+++... +..+...+.+++|+|+|++|+++ .++.|++||+.+     ++.......+...        
T Consensus        99 ~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  176 (706)
T 2z3z_A           99 TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH  176 (706)
T ss_dssp             ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred             ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence            46899999999876544 44577889999999999999985 689999999998     7766555444333        


Q ss_pred             ------eEEEEEecCCCEEEEEe---------------------------------CCCeEEEEEcCCceeeeec-----
Q psy17243         71 ------ILAVAVLSDSRRVVTSD---------------------------------KAGVIAVWVADNAQLLYSA-----  106 (392)
Q Consensus        71 ------v~~~~~~~~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~-----  106 (392)
                            +.++.|+|||++|++++                                 .+..|++||+.+++.....     
T Consensus       177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  256 (706)
T 2z3z_A          177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK  256 (706)
T ss_dssp             GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred             hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence                  48899999999999987                                 4468999999998764432     


Q ss_pred             ccceeEEEEeCCCCEEEEecCCC-----cEEEEeCCCCCCCCcceeeecccc---ceEEEEEEc--CCCEEEEeeCCCcE
Q psy17243        107 LGPSKCLTVTHNMKYIVSGDGDN-----SLRIWPTSPQTHKDDERFTVSHSE---EITCFTVTW--DSQYLITGSRDMSL  176 (392)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~~dg~i  176 (392)
                      ...+..+.|+|+++.|++++.++     .|.+||+.++....... ...+..   .+..++|+|  ++++++++..++.+
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~  335 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF-VETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN  335 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE-EEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE-EccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence            23567899999999999987765     89999997552111111 111221   246789999  99999999999999


Q ss_pred             EEEEcC-CCeEEEEEecCCCceeE-EEEecCCCcEEEEecCCC----eEEEEECCCCceeeeecccccceeEEEEcCCCe
Q psy17243        177 KVWQVV-GGKLAQVLVGHTDHVSC-VAVAVTNKSLVVSGSKDS----NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT  250 (392)
Q Consensus       177 ~i~d~~-~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~  250 (392)
                      ++|++. +++.+..+..+...+.. ++|+|.+..+++++..++    .|..||+.+++ ...+. +...+.+++|+|||+
T Consensus       336 ~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~  413 (706)
T 2z3z_A          336 HLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGS  413 (706)
T ss_dssp             EEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSS
T ss_pred             EEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCC
Confidence            999886 66777788878777876 799955455556666665    78888887765 33443 667789999999999


Q ss_pred             EEEEcC
Q psy17243        251 VAMSDL  256 (392)
Q Consensus       251 ~~~~~~  256 (392)
                      +++...
T Consensus       414 ~l~~~~  419 (706)
T 2z3z_A          414 AIIDIF  419 (706)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            887653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=7.5e-23  Score=195.99  Aligned_cols=252  Identities=10%  Similarity=0.002  Sum_probs=181.8

Q ss_pred             ccCCeEEEEECCCccceeeeccCCc---CeeEEEecCCCCeEEEEeCC---------CeEEEEeCCCCceeEEec---cc
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLN---TVSCVAISPNSIFAVSGSED---------NTAKVWGLTLGSVVSTFK---SH   67 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~---~~   67 (392)
                      +.||.|++||+.+++....+..|..   .|.+++|+|||++|++++.+         +.+.+||+++++. ..+.   .|
T Consensus        34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~  112 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVS  112 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCC
T ss_pred             eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccc
Confidence            5789999999999998888877765   49999999999999998764         7888999998876 3333   34


Q ss_pred             ccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc---c------------------eeEEEEeCCCCEEEEec
Q psy17243         68 QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG---P------------------SKCLTVTHNMKYIVSGD  126 (392)
Q Consensus        68 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~------------------~~~~~~~~~~~~l~~~~  126 (392)
                      ...+..++|+|||+.|+.++. +.|++||+.+++.......   .                  +..+.|+|+++.|++++
T Consensus       113 ~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          113 NAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             SCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             cccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence            445889999999999999886 7999999998766543221   1                  26899999999999987


Q ss_pred             CCC----------------------------------cEEEEeCCCCCCCCccee---eeccccceEEEEEEcCCCEEEE
Q psy17243        127 GDN----------------------------------SLRIWPTSPQTHKDDERF---TVSHSEEITCFTVTWDSQYLIT  169 (392)
Q Consensus       127 ~d~----------------------------------~i~~~d~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~  169 (392)
                      .++                                  .|++||+.+......+..   ...+...+..++|+||+++|++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~  271 (723)
T 1xfd_A          192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVT  271 (723)
T ss_dssp             EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred             ECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEE
Confidence            543                                  789999875442111110   0113567899999999998876


Q ss_pred             eeC----CCcEEEEEcCCCeEEEEEec-CCCce----eEEEEecCCCcEEEE-ecCCC------eEEEEE-CCCCc--ee
Q psy17243        170 GSR----DMSLKVWQVVGGKLAQVLVG-HTDHV----SCVAVAVTNKSLVVS-GSKDS------NLIVWD-METGG--EE  230 (392)
Q Consensus       170 ~~~----dg~i~i~d~~~~~~~~~~~~-~~~~v----~~~~~~~~~~~~l~~-~~~dg------~i~iwd-~~~~~--~~  230 (392)
                      ...    +..|++||+.+++....+.. +...+    ..++|+|++..+++. +..++      .|.+|| ...++  +.
T Consensus       272 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  351 (723)
T 1xfd_A          272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI  351 (723)
T ss_dssp             EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC
T ss_pred             EEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccce
Confidence            643    35799999999887766543 33333    378999554445544 55677      577777 34444  14


Q ss_pred             eeecccccceeE-EEEcCCCeEEEEcC
Q psy17243        231 HFLAGHLGCVTC-VKLAGDGTVAMSDL  256 (392)
Q Consensus       231 ~~~~~~~~~v~~-~~~~~dg~~~~~~~  256 (392)
                      ..+..+...+.. ++|+|||+.++...
T Consensus       352 ~~l~~~~~~~~~~~~~spdg~~l~~~~  378 (723)
T 1xfd_A          352 QSITSGDWDVTKILAYDEKGNKIYFLS  378 (723)
T ss_dssp             CBSCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred             eEeecCCeEEEeeeEEcCCCCEEEEEE
Confidence            455443444544 69999999887543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=4.9e-21  Score=167.86  Aligned_cols=251  Identities=13%  Similarity=0.223  Sum_probs=174.4

Q ss_pred             CccCCeEEEEEC--CCccceeeeccCCcCeeEEEecCCCCeEEEEeCC----CeEEEEeCCC--Cce--eEEecccccce
Q psy17243          2 GGMDCLVNVWQM--NSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED----NTAKVWGLTL--GSV--VSTFKSHQSTI   71 (392)
Q Consensus         2 g~~dg~i~vwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----g~v~iwd~~~--~~~--~~~~~~~~~~v   71 (392)
                      ++.++.|.+|.+  ++++.......+......++|+|++++|++++.+    +.|.+|+++.  ++.  +.....+....
T Consensus        23 ~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p  102 (361)
T 3scy_A           23 SGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADP  102 (361)
T ss_dssp             SSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCE
T ss_pred             CCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCc
Confidence            456788999976  4555443322267778899999999999998875    7999998865  433  33444345567


Q ss_pred             EEEEEecCCCEEEEEe-CCCeEEEEEcCCceeeeec-----------------ccceeEEEEeCCCCEEEEec-CCCcEE
Q psy17243         72 LAVAVLSDSRRVVTSD-KAGVIAVWVADNAQLLYSA-----------------LGPSKCLTVTHNMKYIVSGD-GDNSLR  132 (392)
Q Consensus        72 ~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~-~d~~i~  132 (392)
                      ..+++  ++++|++++ .++.+.+|++.....+...                 ..+..+++++|+++++++++ .++.|.
T Consensus       103 ~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~  180 (361)
T 3scy_A          103 CYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH  180 (361)
T ss_dssp             EEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence            77777  788777776 5789999999754333211                 11336799999999776655 588999


Q ss_pred             EEeCCCCCC----C--Cc----ceeeeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeE--EEEEe---cCCCc
Q psy17243        133 IWPTSPQTH----K--DD----ERFTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKL--AQVLV---GHTDH  196 (392)
Q Consensus       133 ~~d~~~~~~----~--~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~---~~~~~  196 (392)
                      +|++.....    .  ..    ..........+..++|+|+++++++++ .++.|.+||+.+++.  +..+.   .+...
T Consensus       181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~  260 (361)
T 3scy_A          181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQG  260 (361)
T ss_dssp             EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCC
T ss_pred             EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCC
Confidence            999875432    1  00    122234456678999999999888777 589999999987754  23332   22345


Q ss_pred             eeEEEEecCCCcEEEEec-C-CCeEEEEECC--CCc--eeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        197 VSCVAVAVTNKSLVVSGS-K-DSNLIVWDME--TGG--EEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       197 v~~~~~~~~~~~~l~~~~-~-dg~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ...++|+ +++++|+++. . ++.|.+|++.  +++  .+..+.. ...+..++|+|||++++...
T Consensus       261 ~~~i~~s-pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~  324 (361)
T 3scy_A          261 SGDIHLS-PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVAC  324 (361)
T ss_dssp             EEEEEEC-TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred             cccEEEC-CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEE
Confidence            6799999 5666665544 4 5899999986  444  3444444 45788999999999877754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=3.6e-23  Score=198.03  Aligned_cols=249  Identities=10%  Similarity=0.031  Sum_probs=177.0

Q ss_pred             ccCCeEEEEECCCccceeeeccCCc---CeeEEEecCCCCeEEEEeC---------CCeEEEEeCCCCceeEEecccccc
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLN---TVSCVAISPNSIFAVSGSE---------DNTAKVWGLTLGSVVSTFKSHQST   70 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~   70 (392)
                      +.|+.|++||+.+++....+..|..   .+.+++|||||++|++++.         ++.|++||+++++.+.... ....
T Consensus        33 ~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~  111 (719)
T 1z68_A           33 SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRP  111 (719)
T ss_dssp             CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSS
T ss_pred             cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcc
Confidence            3589999999999988777765544   4999999999999998876         7899999999987631111 1356


Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc-c--------------------ceeEEEEeCCCCEEEEecCCC
Q psy17243         71 ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL-G--------------------PSKCLTVTHNMKYIVSGDGDN  129 (392)
Q Consensus        71 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~l~~~~~d~  129 (392)
                      +..++|+|||+.|+.+. ++.|++||+.+++...... +                    ....++|+|||++|++++.|.
T Consensus       112 ~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~  190 (719)
T 1z68_A          112 IQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND  190 (719)
T ss_dssp             BCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC
T ss_pred             cccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC
Confidence            88999999999999886 7899999998876543221 1                    114899999999999987652


Q ss_pred             ----------------------------------cEEEEeCCCCCCCCccee-----eeccccceEEEEEEcCCCEEEEe
Q psy17243        130 ----------------------------------SLRIWPTSPQTHKDDERF-----TVSHSEEITCFTVTWDSQYLITG  170 (392)
Q Consensus       130 ----------------------------------~i~~~d~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~  170 (392)
                                                        .|++||+.++........     ...+...+..++|+||++++++.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~  270 (719)
T 1z68_A          191 TDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQW  270 (719)
T ss_dssp             TTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEE
T ss_pred             CCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEE
Confidence                                              788999875432100011     12467788999999998777764


Q ss_pred             eCC----CcEEEEE----cCCCeEEEEE----ecCCCcee-----EEEEecCCCcEEE-EecCCC--eEEEEECCCCcee
Q psy17243        171 SRD----MSLKVWQ----VVGGKLAQVL----VGHTDHVS-----CVAVAVTNKSLVV-SGSKDS--NLIVWDMETGGEE  230 (392)
Q Consensus       171 ~~d----g~i~i~d----~~~~~~~~~~----~~~~~~v~-----~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~  230 (392)
                      ...    ..|.+||    +.+++....+    ..|...+.     .+.|+|++..+++ +...+|  .|.+||+.+++ .
T Consensus       271 ~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~  349 (719)
T 1z68_A          271 LKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-A  349 (719)
T ss_dssp             EESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-C
T ss_pred             eccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-e
Confidence            432    3488999    7777655444    35666676     7899954444433 344555  57777887766 4


Q ss_pred             eeecccccceeEEEEcCCCeEEEEc
Q psy17243        231 HFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      ..+..+...+..+.++ +++.++..
T Consensus       350 ~~lt~~~~~v~~~~~~-d~~~i~~~  373 (719)
T 1z68_A          350 IQITSGKWEAINIFRV-TQDSLFYS  373 (719)
T ss_dssp             EECSCSSSCEEEEEEE-CSSEEEEE
T ss_pred             EecccCceEEEEEEEE-eCCEEEEE
Confidence            4555556667777777 76665553

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=2.6e-22  Score=174.08  Aligned_cols=266  Identities=10%  Similarity=-0.018  Sum_probs=184.1

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEeccccc--ceEEEEEecCCCEEE-EEeCCCeEEEEEcCCceeeeeccc-------
Q psy17243         39 IFAVSGSEDNTAKVWGLTLGSVVSTFKSHQS--TILAVAVLSDSRRVV-TSDKAGVIAVWVADNAQLLYSALG-------  108 (392)
Q Consensus        39 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~-------  108 (392)
                      ++|++++.++.|.+||+.+++.+..+.....  .+..++|+|+++.++ +...++.|.+||+.+++.+..+..       
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999999999888763322  578999999998765 455678999999999887654432       


Q ss_pred             -ceeEEEEeCCCCEEEEec------------CCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCc
Q psy17243        109 -PSKCLTVTHNMKYIVSGD------------GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS  175 (392)
Q Consensus       109 -~~~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (392)
                       .+..++++|++++++++.            .++.|.+||+.+.+.   .... .....+.+++|+|++++|+++  ++.
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~-~~~~~~~~~~~s~dg~~l~~~--~~~  155 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---RKAF-EAPRQITMLAWARDGSKLYGL--GRD  155 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---EEEE-ECCSSCCCEEECTTSSCEEEE--SSS
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE---EEEE-eCCCCcceeEECCCCCEEEEe--CCe
Confidence             456899999999999886            579999999974322   1222 234567888999999988888  688


Q ss_pred             EEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC-----------------------eEEEEECCCCcee-e
Q psy17243        176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS-----------------------NLIVWDMETGGEE-H  231 (392)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------------------~i~iwd~~~~~~~-~  231 (392)
                      |.+||+.+++....+..+... ..+.|+|.+..+++++..++                       .|.+||+.+++.. .
T Consensus       156 i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  234 (337)
T 1pby_B          156 LHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence            999999999988777654311 12367744433333333333                       4689999998765 2


Q ss_pred             eecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEee
Q psy17243        232 FLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSA  311 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  311 (392)
                      .+..+...+.+++|+|||++++...                     ...+.|....+.....               +..
T Consensus       235 ~~~~~~~~~~~~~~s~dg~~l~~~~---------------------~~v~~~d~~~~~~~~~---------------~~~  278 (337)
T 1pby_B          235 EVRIMDVFYFSTAVNPAKTRAFGAY---------------------NVLESFDLEKNASIKR---------------VPL  278 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEE---------------------SEEEEEETTTTEEEEE---------------EEC
T ss_pred             ecCCCCCceeeEEECCCCCEEEEeC---------------------CeEEEEECCCCcCcce---------------ecC
Confidence            3344556788999999999888751                     0122222211110000               000


Q ss_pred             ccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCc
Q psy17243        312 SMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRS  358 (392)
Q Consensus       312 s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~  358 (392)
                                .......+|+|||++|+ +++.|+.|++||+.+++..
T Consensus       279 ----------~~~~~~~~~s~dg~~l~-~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          279 ----------PHSYYSVNVSTDGSTVW-LGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             ----------SSCCCEEEECTTSCEEE-EESBSSEEEEEETTTCCEE
T ss_pred             ----------CCceeeEEECCCCCEEE-EEcCCCcEEEEECcCCcEE
Confidence                      00112236899999888 5577899999999887763

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=3.3e-21  Score=168.01  Aligned_cols=228  Identities=9%  Similarity=-0.019  Sum_probs=170.9

Q ss_pred             CccCCeEEEEECCCccceeeeccCC-cCeeEEEecCCCCeEE-EEeCCCeEEEEeCCCCceeEEeccc------ccceEE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHL-NTVSCVAISPNSIFAV-SGSEDNTAKVWGLTLGSVVSTFKSH------QSTILA   73 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~------~~~v~~   73 (392)
                      ++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+...      ...+..
T Consensus        17 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~   96 (349)
T 1jmx_B           17 TNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS   96 (349)
T ss_dssp             EETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred             eCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccc
Confidence            4678999999999999888887543 2578999999998654 5567899999999999888777632      233788


Q ss_pred             EEEecCCCEEEEEeCC------------CeEEEEEcCCceee---e--ecccceeEEEEeCCCCEEEEecCCCcEEEEeC
Q psy17243         74 VAVLSDSRRVVTSDKA------------GVIAVWVADNAQLL---Y--SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPT  136 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~  136 (392)
                      ++|+|+++++++++.+            +.|.+||+.+++..   .  .....+.+++++|+++ +++++.  .|.+||+
T Consensus        97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~  173 (349)
T 1jmx_B           97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDV  173 (349)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECT
T ss_pred             eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeC
Confidence            9999999999998865            89999999885432   2  2233567888999999 666543  4999998


Q ss_pred             CCCCCCCcceeee-----------------------------------------------------------------cc
Q psy17243        137 SPQTHKDDERFTV-----------------------------------------------------------------SH  151 (392)
Q Consensus       137 ~~~~~~~~~~~~~-----------------------------------------------------------------~~  151 (392)
                      .+.+.........                                                                 .+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (349)
T 1jmx_B          174 KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL  253 (349)
T ss_dssp             TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             CCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccC
Confidence            7543221110000                                                                 01


Q ss_pred             ccceEEEEEEc-CCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        152 SEEITCFTVTW-DSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       152 ~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      ...+..++|+| ++++++++  ++.|.+||+.+++.+..+.. ...+.+++|+ +++.+|++++.++.|++||+.+++.+
T Consensus       254 ~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          254 TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFD-KKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEEC-SSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             CCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEEC-CCCCEEEEecCCCeEEEEecccccee
Confidence            12456778889 99999988  88999999999998887763 3457789999 55555666778899999999999888


Q ss_pred             eeeccc
Q psy17243        231 HFLAGH  236 (392)
Q Consensus       231 ~~~~~~  236 (392)
                      ..++..
T Consensus       330 ~~~~~~  335 (349)
T 1jmx_B          330 KNIKLP  335 (349)
T ss_dssp             EEEECS
T ss_pred             eeeecC
Confidence            777543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=4.4e-22  Score=178.03  Aligned_cols=195  Identities=11%  Similarity=0.053  Sum_probs=149.3

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC----------cee------EEecccccceEEEEEecCCCEEE----E
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG----------SVV------STFKSHQSTILAVAVLSDSRRVV----T   85 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----------~~~------~~~~~~~~~v~~~~~~~~~~~l~----~   85 (392)
                      ...++.+++++++.++++++.++ +++|+....          ..+      ..+ .+...|.+++|+|++++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence            44688999999999999999887 888875311          011      112 2566799999999999999    7


Q ss_pred             EeCCCeEEEEEcCCc--------ee---eee---cccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCCCcceeeec
Q psy17243         86 SDKAGVIAVWVADNA--------QL---LYS---ALGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS  150 (392)
Q Consensus        86 ~~~d~~i~iwd~~~~--------~~---~~~---~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  150 (392)
                      ++.|+.|++||+.+.        +.   +..   +...+.+++|+|+ +++|++++.||.|++||+++.   ........
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~---~~~~~~~~  190 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET---VKVCATLP  190 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS---EEEEEEEC
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC---cceeeccC
Confidence            888999999998765        11   222   4568999999998 889999999999999999854   22333446


Q ss_pred             cccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCC-------CceeEEEEecCCCcEEEE-ecCCC-----
Q psy17243        151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT-------DHVSCVAVAVTNKSLVVS-GSKDS-----  217 (392)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~-~~~dg-----  217 (392)
                      |...|.+++|+|++++|++|+.||.|++||++ ++....+..|.       ..+.+++|++ +..++++ ...+|     
T Consensus       191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~  268 (434)
T 2oit_A          191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETS  268 (434)
T ss_dssp             GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSC
T ss_pred             CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-CceEEEEEccCCCccCCC
Confidence            78899999999999999999999999999998 55555554432       3789999994 5555543 33443     


Q ss_pred             -eEEEEECCCC
Q psy17243        218 -NLIVWDMETG  227 (392)
Q Consensus       218 -~i~iwd~~~~  227 (392)
                       .+++|++.+.
T Consensus       269 ~~v~i~~l~~~  279 (434)
T 2oit_A          269 PDVVMALLPKK  279 (434)
T ss_dssp             CEEEEEECCCT
T ss_pred             CceEEEEeccC
Confidence             3999999865

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.89  E-value=1e-21  Score=173.99  Aligned_cols=215  Identities=7%  Similarity=-0.062  Sum_probs=153.9

Q ss_pred             EEECCCccceeeeccCCcCeeE-----EEecCCCCeEEEEeC-CC--eEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243         10 VWQMNSHELQSTMEGHLNTVSC-----VAISPNSIFAVSGSE-DN--TAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus        10 vwd~~~~~~~~~~~~h~~~v~~-----~~~~~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      .+|..++..+..+..|......     .+|+|||++|+.++. ++  .|.+||+.+++.......+...+..+.|+|+++
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~   93 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD   93 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence            4566788888888888766665     889999999998887 66  488889999988777776666666788999999


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeeecc--cc-ee--EEEEeCCCCEEEEe----------------------cCCCcEEEE
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLYSAL--GP-SK--CLTVTHNMKYIVSG----------------------DGDNSLRIW  134 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~~~~--~~-~~--~~~~~~~~~~l~~~----------------------~~d~~i~~~  134 (392)
                      .|+.++.++.|++||+.+++......  .. ..  ...+++++..++..                      ..+..|.+|
T Consensus        94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (388)
T 3pe7_A           94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV  173 (388)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence            99999999999999999987643322  21 22  23458899888742                      234679999


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEc-CCCEEEEeeCC------CcEEEEEcCCCeEEEEEecCC--CceeEEEEecC
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTW-DSQYLITGSRD------MSLKVWQVVGGKLAQVLVGHT--DHVSCVAVAVT  205 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~  205 (392)
                      |+.++.    ......+...+..++|+| +++.|+....+      ..|.++|+..++. ..+..+.  ..+...+|+|.
T Consensus       174 d~~~g~----~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spd  248 (388)
T 3pe7_A          174 DLKTGE----STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPD  248 (388)
T ss_dssp             ETTTCC----EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTT
T ss_pred             ECCCCc----eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCC
Confidence            987542    222334566789999999 99988877653      3788888765543 3444344  35778899954


Q ss_pred             CCcEEEEecCCC----eEEEEECCCCce
Q psy17243        206 NKSLVVSGSKDS----NLIVWDMETGGE  229 (392)
Q Consensus       206 ~~~~l~~~~~dg----~i~iwd~~~~~~  229 (392)
                      +..+++.+..++    .|++||+.+++.
T Consensus       249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          249 GSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             SSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             CCEEEEEecCCCCCcceEEEEecCCCce
Confidence            444444443322    399999988764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=3.6e-21  Score=179.63  Aligned_cols=237  Identities=14%  Similarity=0.036  Sum_probs=176.5

Q ss_pred             cCCeEEEEECCCccceeeeccCC-cCeeEEEecCCCCeEEEEeC---CCeEEEEeCCC---CceeEEecccccceEEEEE
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHL-NTVSCVAISPNSIFAVSGSE---DNTAKVWGLTL---GSVVSTFKSHQSTILAVAV   76 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~---dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~   76 (392)
                      .||+++||++.+++.. .+..|. ..+..++|+|+ +++++++.   +....+|.++.   +... .+... ..+...+|
T Consensus        42 ~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~  117 (582)
T 3o4h_A           42 SEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSG  117 (582)
T ss_dssp             ETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEE
T ss_pred             cCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeee
Confidence            3899999999766554 454455 68999999999 77777765   45556655433   3322 44322 23446688


Q ss_pred             ecCCCE-EEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCC----CcEEEEeCCCCCCCCcceeeecc
Q psy17243         77 LSDSRR-VVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGD----NSLRIWPTSPQTHKDDERFTVSH  151 (392)
Q Consensus        77 ~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~  151 (392)
                      +|+++. +++...++.+.+||+.+++.......+...+.++|+|+++++++.+    +.|++||+.++..    .....+
T Consensus       118 s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~----~~l~~~  193 (582)
T 3o4h_A          118 VDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL----RVFDSG  193 (582)
T ss_dssp             EECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC----EEECCS
T ss_pred             CCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc----eEeecC
Confidence            888863 3444455556699999987655444444889999999999988776    7899999875432    233467


Q ss_pred             ccceEEEEEEcCCCEEEEeeCCC--cEEEEEcCCCeEEEEEecCCCceeEEE--------EecCCCcEEEEecCCCeEEE
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDM--SLKVWQVVGGKLAQVLVGHTDHVSCVA--------VAVTNKSLVVSGSKDSNLIV  221 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~l~~~~~dg~i~i  221 (392)
                      ...+..++|+|||++|+++..++  .|++||+.+++.. .+..|...+..++        |+| ++.++++++.|+.+++
T Consensus       194 ~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l  271 (582)
T 3o4h_A          194 EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAV  271 (582)
T ss_dssp             SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEE
T ss_pred             CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEE
Confidence            77889999999999999888888  8999999998877 7777777777777        995 5589999999999999


Q ss_pred             EECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        222 WDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       222 wd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      |++  ++...   .+.+.+.+++|+ ||+++++..
T Consensus       272 ~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s  300 (582)
T 3o4h_A          272 FID--GERVE---APQGNHGRVVLW-RGKLVTSHT  300 (582)
T ss_dssp             EET--TEEEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred             EEE--CCeec---cCCCceEEEEec-CCEEEEEEc
Confidence            999  66544   234678899999 999887754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=7.2e-20  Score=159.54  Aligned_cols=226  Identities=16%  Similarity=0.178  Sum_probs=158.1

Q ss_pred             cCCeEEEEECCCcc--ceeeeccCCcCeeEEEecCCCCeEEEEe-CCCeEEEEeCCC-Cc--eeEEecc---------cc
Q psy17243          4 MDCLVNVWQMNSHE--LQSTMEGHLNTVSCVAISPNSIFAVSGS-EDNTAKVWGLTL-GS--VVSTFKS---------HQ   68 (392)
Q Consensus         4 ~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~v~iwd~~~-~~--~~~~~~~---------~~   68 (392)
                      .++.|++|++.+++  .+..+..+...+..++|+|++++|++++ .++.|.+|++.. +.  .+..+..         +.
T Consensus        61 ~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~  140 (347)
T 3hfq_A           61 DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDG  140 (347)
T ss_dssp             TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSS
T ss_pred             CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccC
Confidence            36899999997665  4444455788899999999999888887 679999999963 32  2333321         11


Q ss_pred             cceEEEEEecCCCEEEEEeCCCeEEEEEcC-Cceeee--e--c--ccceeEEEEeCCCCEEEE-ecCCCcEEEEeCCCCC
Q psy17243         69 STILAVAVLSDSRRVVTSDKAGVIAVWVAD-NAQLLY--S--A--LGPSKCLTVTHNMKYIVS-GDGDNSLRIWPTSPQT  140 (392)
Q Consensus        69 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~--~--~--~~~~~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~  140 (392)
                      ..+.+++|+|+++.+++...++.|.+|++. +++...  .  .  ......++|+|+++++++ ...++.|.+|++....
T Consensus       141 ~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~  220 (347)
T 3hfq_A          141 SHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT  220 (347)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             CCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence            248899999999966666678899999998 454321  1  1  124567999999996666 5668899999987421


Q ss_pred             CCC-cceeeecc------ccceEEEEEEcCCCEEEE-eeCCCcEEEEEcC---CCeEEEEEecCCCceeEEEEecCCCcE
Q psy17243        141 HKD-DERFTVSH------SEEITCFTVTWDSQYLIT-GSRDMSLKVWQVV---GGKLAQVLVGHTDHVSCVAVAVTNKSL  209 (392)
Q Consensus       141 ~~~-~~~~~~~~------~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~  209 (392)
                      ... ........      ...+..++|+|++++|++ ...++.|.+|++.   ..+.+..+..+...+..++|+ +++++
T Consensus       221 g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~s-pdg~~  299 (347)
T 3hfq_A          221 GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLD-PTEAF  299 (347)
T ss_dssp             TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEEC-TTSSE
T ss_pred             CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEEC-CCCCE
Confidence            111 11111111      145888999999998754 5568999999997   335566666666778999999 56666


Q ss_pred             EEEec-CCCeEEEE--ECCCCcee
Q psy17243        210 VVSGS-KDSNLIVW--DMETGGEE  230 (392)
Q Consensus       210 l~~~~-~dg~i~iw--d~~~~~~~  230 (392)
                      |++++ .++.|.+|  |..+++..
T Consensus       300 l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          300 VVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEEEcCCCcEEEEEEeCCCCeEE
Confidence            55555 56899999  55566654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=3.7e-21  Score=172.03  Aligned_cols=198  Identities=12%  Similarity=0.056  Sum_probs=153.7

Q ss_pred             CeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCce----------e--------eeecccc
Q psy17243         48 NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ----------L--------LYSALGP  109 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------~--------~~~~~~~  109 (392)
                      +.+++|+... .      .....++.+++++++.++++++.++ +++|+.....          .        ...+...
T Consensus        23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            4688876431 1      1344678899999999999999888 8888753210          0        1112346


Q ss_pred             eeEEEEeCCCCEEE----EecCCCcEEEEeCCCC-----CC---CCcceeeeccccceEEEEEEcC-CCEEEEeeCCCcE
Q psy17243        110 SKCLTVTHNMKYIV----SGDGDNSLRIWPTSPQ-----TH---KDDERFTVSHSEEITCFTVTWD-SQYLITGSRDMSL  176 (392)
Q Consensus       110 ~~~~~~~~~~~~l~----~~~~d~~i~~~d~~~~-----~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i  176 (392)
                      +.+++|+|++++|+    +++.|+.|++||+...     ..   ........+|...|.+++|+|+ +++|++++.||+|
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            89999999999999    7888999999998643     11   1112334468899999999998 8899999999999


Q ss_pred             EEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccc-------ccceeEEEEcCCC
Q psy17243        177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH-------LGCVTCVKLAGDG  249 (392)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~dg  249 (392)
                      ++||++++..+....+|...|.+++|+ +++.+|++|+.||.|++||++ ++....+..|       ...|.++.|++++
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~v~~v~ws-pdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~  252 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVAVTSVCWS-PKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY  252 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGCEEEEEEC-TTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred             EEEEcCCCcceeeccCCCCceeEEEEc-CCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence            999999998777777899999999999 568899999999999999998 5555555433       3389999999999


Q ss_pred             eEEEEc
Q psy17243        250 TVAMSD  255 (392)
Q Consensus       250 ~~~~~~  255 (392)
                      .+++..
T Consensus       253 ~~l~~~  258 (434)
T 2oit_A          253 VFAIVY  258 (434)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            888553

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.87  E-value=1.4e-19  Score=157.97  Aligned_cols=241  Identities=11%  Similarity=0.099  Sum_probs=173.9

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEe----------CCCeEEEEeCCCCceeEEeccc------
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS----------EDNTAKVWGLTLGSVVSTFKSH------   67 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~------   67 (392)
                      .|+.|.+||..+++.+..+..+..+  .++|+|++++++++.          .++.|.+||..+++.+.++...      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            4789999999999999888877666  899999999999886          3678999999999988887643      


Q ss_pred             ccceEEEEEecCCCEEEEEeC--CCeEEEEEcCCceeeee-cccce-eEEEEeCCC-CEEEEecCCCcEEEEeCCC----
Q psy17243         68 QSTILAVAVLSDSRRVVTSDK--AGVIAVWVADNAQLLYS-ALGPS-KCLTVTHNM-KYIVSGDGDNSLRIWPTSP----  138 (392)
Q Consensus        68 ~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~-~~~~~~~~~-~~l~~~~~d~~i~~~d~~~----  138 (392)
                      ......++++|++++|+++..  ++.|.+||+.+++.+.. ...+. ..+.+.|++ ..+++.+.||.+.+|+...    
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~  186 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV  186 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence            234667999999999998874  58999999999988776 43211 112333332 3344444444444444322    


Q ss_pred             --------------------------------------------CCCCCcceeee-c----c----ccceEEEEEEcCCC
Q psy17243        139 --------------------------------------------QTHKDDERFTV-S----H----SEEITCFTVTWDSQ  165 (392)
Q Consensus       139 --------------------------------------------~~~~~~~~~~~-~----~----~~~v~~~~~~~~~~  165 (392)
                                                                  ........... .    .    ......++|+|+++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~  266 (361)
T 2oiz_A          187 ASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG  266 (361)
T ss_dssp             EEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred             eeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCC
Confidence                                                        10000000000 0    0    00111268899988


Q ss_pred             EEEEeeC-----------CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC--ceeee
Q psy17243        166 YLITGSR-----------DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG--GEEHF  232 (392)
Q Consensus       166 ~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~  232 (392)
                      .++++..           .+.|.+||+.+++.+..+..+.  +..++|+ +++++|++++. +.|.+||..++  +.+..
T Consensus       267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~s-pdg~~l~v~n~-~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTID-QQRNLMLTLDG-GNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEE-TTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred             eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEEC-CCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence            8887643           3489999999999999998776  8999999 56668887776 99999999999  98888


Q ss_pred             ecccccceeEEEEcCCCe
Q psy17243        233 LAGHLGCVTCVKLAGDGT  250 (392)
Q Consensus       233 ~~~~~~~v~~~~~~~dg~  250 (392)
                      +..+......++++|||.
T Consensus       343 i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          343 IEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ETTSCSSEEEEEECCCSC
T ss_pred             eccCCCCcEEEEecCCCC
Confidence            876777888999999985

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=6.6e-20  Score=159.73  Aligned_cols=218  Identities=11%  Similarity=0.044  Sum_probs=165.6

Q ss_pred             EEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccc-cceEEEEEecCCCEEEE-EeCCCeEEEEEcCCceeeeeccc
Q psy17243         31 CVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQ-STILAVAVLSDSRRVVT-SDKAGVIAVWVADNAQLLYSALG  108 (392)
Q Consensus        31 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~  108 (392)
                      .+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+++++++ ...++.|.+||+.+++.+.....
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678888899999999999999999999888887443 25788999999987654 45689999999999887655432


Q ss_pred             ---------ceeEEEEeCCCCEEEEecCC------------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEE
Q psy17243        109 ---------PSKCLTVTHNMKYIVSGDGD------------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYL  167 (392)
Q Consensus       109 ---------~~~~~~~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  167 (392)
                               .+..++++|+++++++++.+            +.|.+||+.++......... .+...+.+++|+|+++ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-E
Confidence                     15789999999999998865            89999999754333333322 3345688999999999 6


Q ss_pred             EEeeCCCcEEEEEcCCCeEEEEEecCC-----------------------------------------------------
Q psy17243        168 ITGSRDMSLKVWQVVGGKLAQVLVGHT-----------------------------------------------------  194 (392)
Q Consensus       168 ~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------------------------------------------  194 (392)
                      ++++.  .|.+||+.+++.+..+..+.                                                     
T Consensus       162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            66543  49999999988776664331                                                     


Q ss_pred             ---------------CceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        195 ---------------DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       195 ---------------~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                                     ..+..++++|.++.+++++  ++.|.+||+.+++.+..+.. ...+.+++|+|||+.++..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~  312 (349)
T 1jmx_B          240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLG  312 (349)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEE
T ss_pred             ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEe
Confidence                           1234566674267777777  88999999999988777753 3457899999999877764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=2.3e-20  Score=174.18  Aligned_cols=223  Identities=12%  Similarity=0.079  Sum_probs=164.4

Q ss_pred             CCcCeeEEEecCCCCeEEEEeC-CCeEEEEeCCCCceeEEecccc-cceEEEEEecCCCEEEEEeC---CCeEEEE--Ec
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSE-DNTAKVWGLTLGSVVSTFKSHQ-STILAVAVLSDSRRVVTSDK---AGVIAVW--VA   97 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~iw--d~   97 (392)
                      +..+|++++|+|||++||+++. ||+++||+++.++..+ +..+. ..+..++|+|+ +.+++++.   +....+|  +.
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            4568999999999999999887 9999999997665544 44454 68999999999 77777765   4545565  44


Q ss_pred             --CCceeeeecccceeEEEEeCCCCE-EEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC-
Q psy17243         98 --DNAQLLYSALGPSKCLTVTHNMKY-IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-  173 (392)
Q Consensus        98 --~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-  173 (392)
                        ................+++|+++. +++...++.+.+||+.++..   .... .+..  .+++|+|||++|++++.+ 
T Consensus        98 ~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~---~~l~-~~~~--~~~~~spDG~~la~~~~~~  171 (582)
T 3o4h_A           98 SRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL---RELA-RLPG--FGFVSDIRGDLIAGLGFFG  171 (582)
T ss_dssp             TSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE---EEEE-EESS--CEEEEEEETTEEEEEEEEE
T ss_pred             cCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE---EEee-cCCC--ceEEECCCCCEEEEEEEcC
Confidence              333332222223456788888863 33444455566999874422   2222 2222  788999999999988776 


Q ss_pred             ---CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC--eEEEEECCCCceeeeecccccceeEEE----
Q psy17243        174 ---MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS--NLIVWDMETGGEEHFLAGHLGCVTCVK----  244 (392)
Q Consensus       174 ---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~----  244 (392)
                         +.|++||+.+++.. .+..|...+..++|+ ++++.|+++..++  .|++||+.+++.. .+..|...+..++    
T Consensus       172 ~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          172 GGRVSLFTSNLSSGGLR-VFDSGEGSFSSASIS-PGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             TTEEEEEEEETTTCCCE-EECCSSCEEEEEEEC-TTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred             CCCeEEEEEcCCCCCce-EeecCCCccccceEC-CCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence               78999999888754 667788889999999 6778888888888  8999999998887 7777777777777    


Q ss_pred             ----EcCCCeEEEEcCCC
Q psy17243        245 ----LAGDGTVAMSDLPP  258 (392)
Q Consensus       245 ----~~~dg~~~~~~~~~  258 (392)
                          |+|||.++++...+
T Consensus       249 ~~~~~spdg~~~~~~~~~  266 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARRE  266 (582)
T ss_dssp             EEEEECTTSCEEEEEEET
T ss_pred             cceeEcCCCcEEEEEEcC
Confidence                99999887776544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=1.3e-20  Score=180.38  Aligned_cols=224  Identities=8%  Similarity=-0.008  Sum_probs=160.4

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccc-----eEEEEEecCCCEEEEEeCC---------Ce
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQST-----ILAVAVLSDSRRVVTSDKA---------GV   91 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~   91 (392)
                      .....++.|+|++++++++  |+.|++||+.+++....+..|...     ...+.|+|||++|+.++.+         +.
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            3456789999999988886  899999999999988777776533     2447899999999998876         56


Q ss_pred             EEEEEcCCceeee--ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecccc----------------
Q psy17243         92 IAVWVADNAQLLY--SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE----------------  153 (392)
Q Consensus        92 i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~----------------  153 (392)
                      +.+||+.+++...  .....+...+|+|||+.|+.+ .++.|++|++..+.....  ...++..                
T Consensus        94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~l--t~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI--TWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC--CSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEE--cCCCCccceecCcccccccchhc
Confidence            7799999997654  234567899999999999988 468999999875432211  1111111                


Q ss_pred             -ceEEEEEEcCCCEEEEeeCCC------------------------------------cEEEEEcCC---Ce--EEEEEe
Q psy17243        154 -EITCFTVTWDSQYLITGSRDM------------------------------------SLKVWQVVG---GK--LAQVLV  191 (392)
Q Consensus       154 -~v~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~~  191 (392)
                       ....+.|+|||++|+..+.|.                                    .|++||+.+   ++  ....+.
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~  250 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT  250 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence             123588999999998875321                                    588899988   73  223333


Q ss_pred             ------cCCCceeEEEEecCCCcEEEEec----CCCeEEEEECCCCc----ee--eee--ccccccee-----EEEEcCC
Q psy17243        192 ------GHTDHVSCVAVAVTNKSLVVSGS----KDSNLIVWDMETGG----EE--HFL--AGHLGCVT-----CVKLAGD  248 (392)
Q Consensus       192 ------~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~----~~--~~~--~~~~~~v~-----~~~~~~d  248 (392)
                            +|...+..++|+| ++++++...    .+..|++||+.+++    +.  ..+  ..|...|.     ...|+||
T Consensus       251 ~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          251 APASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             CCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred             CCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence                  3777899999995 566555432    23479999999887    22  222  34555544     7899999


Q ss_pred             CeEEE-Ec
Q psy17243        249 GTVAM-SD  255 (392)
Q Consensus       249 g~~~~-~~  255 (392)
                      |+.++ +.
T Consensus       330 G~~l~~~~  337 (740)
T 4a5s_A          330 GNSFYKII  337 (740)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEE
Confidence            99776 54

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=4.2e-19  Score=155.68  Aligned_cols=249  Identities=8%  Similarity=0.000  Sum_probs=167.7

Q ss_pred             CeEEEEEC--CCccceee--ec-cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC-CCceeEEeccc-ccceEEEEEec
Q psy17243          6 CLVNVWQM--NSHELQST--ME-GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT-LGSVVSTFKSH-QSTILAVAVLS   78 (392)
Q Consensus         6 g~i~vwd~--~~~~~~~~--~~-~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~   78 (392)
                      +.|.+|++  .++++...  .. .+...+..++|+|++++|++++.+ .|.+|++. +++........ .+...+++|+|
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp   92 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT   92 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence            56888765  45554322  11 234568899999999999998887 99999997 77765433211 12345688999


Q ss_pred             CCCE--EEEEe-------------CCCeEEEEEcC-Cceeeee-------cccceeEEEEeCCCCEEEEecC-CCcEEEE
Q psy17243         79 DSRR--VVTSD-------------KAGVIAVWVAD-NAQLLYS-------ALGPSKCLTVTHNMKYIVSGDG-DNSLRIW  134 (392)
Q Consensus        79 ~~~~--l~~~~-------------~d~~i~iwd~~-~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~  134 (392)
                      ++++  ++++.             .++.+.+|++. +++....       ....+.+++|+|++++++++.. ++.|++|
T Consensus        93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~  172 (365)
T 1jof_A           93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTH  172 (365)
T ss_dssp             CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence            9985  44543             68999999997 4544322       2246789999999998887654 6899999


Q ss_pred             eCC-CCCCCCcceeee-ccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcC--CCeEE---EEEec-------CCC----
Q psy17243        135 PTS-PQTHKDDERFTV-SHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVV--GGKLA---QVLVG-------HTD----  195 (392)
Q Consensus       135 d~~-~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~---~~~~~-------~~~----  195 (392)
                      ++. +++......... .+...+..++|+|++++|++++. ++.|.+|++.  +++..   ..+..       |..    
T Consensus       173 ~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  252 (365)
T 1jof_A          173 RKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK  252 (365)
T ss_dssp             EECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred             EECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccc
Confidence            997 332211111111 13567899999999999888775 6899999875  45542   22221       122    


Q ss_pred             --ceeEEE-EecCCCcEEEEecCC-C-----eEEEEECC-CCceee---eecccccceeEEEEcC---CCeEEEEcC
Q psy17243        196 --HVSCVA-VAVTNKSLVVSGSKD-S-----NLIVWDME-TGGEEH---FLAGHLGCVTCVKLAG---DGTVAMSDL  256 (392)
Q Consensus       196 --~v~~~~-~~~~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~~~---dg~~~~~~~  256 (392)
                        .+..++ |+ +++++|++++.+ .     .|.+|++. +++...   ....+......++|+|   ||++++...
T Consensus       253 ~~~~~~i~~~s-pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~  328 (365)
T 1jof_A          253 GLYRADVCALT-FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD  328 (365)
T ss_dssp             BSEEEEEEEEC-TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred             ccccccEEEEC-CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence              478899 99 566666655432 2     89999996 566443   2333455677899999   899888764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=6.7e-18  Score=147.90  Aligned_cols=238  Identities=10%  Similarity=0.133  Sum_probs=159.0

Q ss_pred             CCeEEEEECCC--ccc--eeeeccCCcCeeEEEecCCCCeEEEEe-CCCeEEEEeCCCCceeEEec------c-------
Q psy17243          5 DCLVNVWQMNS--HEL--QSTMEGHLNTVSCVAISPNSIFAVSGS-EDNTAKVWGLTLGSVVSTFK------S-------   66 (392)
Q Consensus         5 dg~i~vwd~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~------~-------   66 (392)
                      ++.|.+|++..  ++.  +.....+......+++  ++++|++++ .++.|.+|++.....+..+.      +       
T Consensus        74 ~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~  151 (361)
T 3scy_A           74 QAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKER  151 (361)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTT
T ss_pred             CCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccc
Confidence            48999998865  432  3334445566777888  777777665 57899999997543332211      1       


Q ss_pred             -cccceEEEEEecCCCEEEEEe-CCCeEEEEEcCCcee------e--------ee--cccceeEEEEeCCCCEEEEec-C
Q psy17243         67 -HQSTILAVAVLSDSRRVVTSD-KAGVIAVWVADNAQL------L--------YS--ALGPSKCLTVTHNMKYIVSGD-G  127 (392)
Q Consensus        67 -~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~------~--------~~--~~~~~~~~~~~~~~~~l~~~~-~  127 (392)
                       +...+.+++|+|+++++++++ .++.|.+|++.....      +        ..  .......++|+|+++++++++ .
T Consensus       152 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  231 (361)
T 3scy_A          152 QTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI  231 (361)
T ss_dssp             CSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence             123358899999999776665 478999998875431      1        11  123457899999999887777 6


Q ss_pred             CCcEEEEeCCCCCCCCccee--eeccccceEEEEEEcCCCEEEEeeCC--CcEEEEEcC--CCe--EEEEEecCCCceeE
Q psy17243        128 DNSLRIWPTSPQTHKDDERF--TVSHSEEITCFTVTWDSQYLITGSRD--MSLKVWQVV--GGK--LAQVLVGHTDHVSC  199 (392)
Q Consensus       128 d~~i~~~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~--~~~--~~~~~~~~~~~v~~  199 (392)
                      ++.|.+|++..+........  ...+......++|+||+++|+++..+  +.|.+|++.  +++  .+..+.. ...+..
T Consensus       232 ~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~  310 (361)
T 3scy_A          232 GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRN  310 (361)
T ss_dssp             TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCE
T ss_pred             CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCce
Confidence            89999999874322111111  11233456899999999998776654  899999995  444  4444544 557789


Q ss_pred             EEEecCCCcEEEEec-CCCeEEEEE--CCCCceeeeec-ccccceeEEEEc
Q psy17243        200 VAVAVTNKSLVVSGS-KDSNLIVWD--METGGEEHFLA-GHLGCVTCVKLA  246 (392)
Q Consensus       200 ~~~~~~~~~~l~~~~-~dg~i~iwd--~~~~~~~~~~~-~~~~~v~~~~~~  246 (392)
                      ++|+ +++++|++++ .++.|.+|+  ..+++...... .+...+.|+.|.
T Consensus       311 ~~~s-pdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          311 FIIT-PNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEC-TTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEC-CCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            9999 5666555555 679999964  45666554432 244568888875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=2.8e-18  Score=151.78  Aligned_cols=245  Identities=11%  Similarity=-0.028  Sum_probs=169.6

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEE--EecCCCEEE
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVA--VLSDSRRVV   84 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~   84 (392)
                      .|.+||+.+++......++...+..+.|+|+++.|+.++.++.|++||+.+++....+..+...+....  ++|+++.++
T Consensus        61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~  140 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLV  140 (388)
T ss_dssp             EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEE
T ss_pred             eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeec
Confidence            588899999888777777777777789999999999999999999999999988776665655554444  478998887


Q ss_pred             EE----------------------eCCCeEEEEEcCCceeee--ecccceeEEEEeC-CCCEEEEecCC------CcEEE
Q psy17243         85 TS----------------------DKAGVIAVWVADNAQLLY--SALGPSKCLTVTH-NMKYIVSGDGD------NSLRI  133 (392)
Q Consensus        85 ~~----------------------~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~-~~~~l~~~~~d------~~i~~  133 (392)
                      ..                      ..+..|.+||+.+++...  .....+..+.|+| +++.|+....+      ..|.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~  220 (388)
T 3pe7_A          141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWL  220 (388)
T ss_dssp             EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEE
T ss_pred             cccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEE
Confidence            43                      234689999999886543  3334578899999 99988877653      37888


Q ss_pred             EeCCCCCCCCcceeeeccc--cceEEEEEEcCCCEEEEeeC-CC----cEEEEEcCCCeEEE--EEecCCC---ceeEEE
Q psy17243        134 WPTSPQTHKDDERFTVSHS--EEITCFTVTWDSQYLITGSR-DM----SLKVWQVVGGKLAQ--VLVGHTD---HVSCVA  201 (392)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~--~~~~~~~---~v~~~~  201 (392)
                      +|......   .... .+.  ..+...+|+|||+.|+..+. ++    .|++||+.+++...  .+.++..   ....+.
T Consensus       221 ~d~~~~~~---~~l~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~  296 (388)
T 3pe7_A          221 INEDGTNM---RKVK-THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL  296 (388)
T ss_dssp             EETTSCCC---EESC-CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred             EeCCCCce---EEee-eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence            88753322   1121 222  35778899999997755443 22    39999999887433  2322100   012236


Q ss_pred             EecCCCcEEEEe--------cCCCeEEEEECCCCceeeeeccccc-----------ceeEEEEcCCCeEEEEcC
Q psy17243        202 VAVTNKSLVVSG--------SKDSNLIVWDMETGGEEHFLAGHLG-----------CVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       202 ~~~~~~~~l~~~--------~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~~~dg~~~~~~~  256 (392)
                      |+|.+..++++.        ..+..|++||+.+++. ..+..+..           .+..++|+|||+.+++..
T Consensus       297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             EEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             EccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence            885444444332        4567899999998765 44544544           578899999999888754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=3.8e-17  Score=141.01  Aligned_cols=230  Identities=11%  Similarity=0.052  Sum_probs=171.9

Q ss_pred             CcCeeEEEecCCCCeEEEEeCC------------------------CeEEEEeCCCCceeEEec-ccccceEEEEEecCC
Q psy17243         26 LNTVSCVAISPNSIFAVSGSED------------------------NTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSDS   80 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~d------------------------g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~   80 (392)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++.+..+. .+-.....++++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999988888777                        479999999998877665 344578999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCce-eeeecc------------cceeEEEEeC-CCCEEEEec-CCCcEEEEeCCCCCCCCcc
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQ-LLYSAL------------GPSKCLTVTH-NMKYIVSGD-GDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~-~~~~~~------------~~~~~~~~~~-~~~~l~~~~-~d~~i~~~d~~~~~~~~~~  145 (392)
                      +.+++...++.|++||..... .+..+.            .....++++| ++..+++.+ .++.|++|+... ......
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEEe
Confidence            988888889999999987552 333221            2467899999 788777775 699999999532 111111


Q ss_pred             eee-------eccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCCeEEEEEe--cCCCceeEEEEecCCCcEEEEe--
Q psy17243        146 RFT-------VSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVGGKLAQVLV--GHTDHVSCVAVAVTNKSLVVSG--  213 (392)
Q Consensus       146 ~~~-------~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~--  213 (392)
                      ...       ..+-.....++++|+ ++++++...++.|++||..+++.+..+.  .+...+..++++|  +..+.+.  
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~  259 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGK  259 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCC
Confidence            000       012234789999998 6677777788999999998888888874  3556788899985  4333333  


Q ss_pred             -----cCCCeEEEEECCCCceeeeec---ccccceeEEEEcCCCeEEEEcCCC
Q psy17243        214 -----SKDSNLIVWDMETGGEEHFLA---GHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       214 -----~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                           ..+..|++||..+++.+..+.   .+......++++|||.+++++...
T Consensus       260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~  312 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT  312 (329)
T ss_dssp             CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred             EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence                 344589999999999888873   566778999999999988887643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=9.1e-18  Score=147.17  Aligned_cols=221  Identities=10%  Similarity=0.086  Sum_probs=153.5

Q ss_pred             eEEEEECC-CccceeeeccC-CcCeeEEEecCCCCe--EEEEe-------------CCCeEEEEeCC-CCceeEEec---
Q psy17243          7 LVNVWQMN-SHELQSTMEGH-LNTVSCVAISPNSIF--AVSGS-------------EDNTAKVWGLT-LGSVVSTFK---   65 (392)
Q Consensus         7 ~i~vwd~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~--l~~~~-------------~dg~v~iwd~~-~~~~~~~~~---   65 (392)
                      .|.+|++. ++++....... .+...+++|+|++++  +++++             .+|.+.+|++. +++....+.   
T Consensus        61 ~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~  140 (365)
T 1jof_A           61 KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE  140 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE
T ss_pred             eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE
Confidence            79999997 77665433211 133667999999994  55553             68999999997 466554443   


Q ss_pred             -ccccceEEEEEecCCCEEEEEeC-CCeEEEEEcC-Cceee--eec-----ccceeEEEEeCCCCEEEEecC-CCcEEEE
Q psy17243         66 -SHQSTILAVAVLSDSRRVVTSDK-AGVIAVWVAD-NAQLL--YSA-----LGPSKCLTVTHNMKYIVSGDG-DNSLRIW  134 (392)
Q Consensus        66 -~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~-~~~~~--~~~-----~~~~~~~~~~~~~~~l~~~~~-d~~i~~~  134 (392)
                       .+...+.+++|+|+|+++++++. ++.|++|++. +++..  ...     ......++|+|+++++++++. ++.|.+|
T Consensus       141 ~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~  220 (365)
T 1jof_A          141 YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEY  220 (365)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEE
Confidence             24567899999999998887764 6899999998 66542  222     234678999999999888765 7899999


Q ss_pred             eCCCCCCCCc-----ceeee----cccc------ceEEEE-EEcCCCEEEEeeCCC------cEEEEEcC-CCeEEE---
Q psy17243        135 PTSPQTHKDD-----ERFTV----SHSE------EITCFT-VTWDSQYLITGSRDM------SLKVWQVV-GGKLAQ---  188 (392)
Q Consensus       135 d~~~~~~~~~-----~~~~~----~~~~------~v~~~~-~~~~~~~l~~~~~dg------~i~i~d~~-~~~~~~---  188 (392)
                      ++........     .....    ++..      .+..++ |+||+++|+++..+.      .|.+|++. +++...   
T Consensus       221 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~  300 (365)
T 1jof_A          221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             EEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeee
Confidence            8753211110     11110    1121      578999 999999988776432      89999996 565443   


Q ss_pred             EEecCCCceeEEEEecC--CCcEEEEecC-CCeEEEEECCCC
Q psy17243        189 VLVGHTDHVSCVAVAVT--NKSLVVSGSK-DSNLIVWDMETG  227 (392)
Q Consensus       189 ~~~~~~~~v~~~~~~~~--~~~~l~~~~~-dg~i~iwd~~~~  227 (392)
                      ....+...+..++|+|.  ++++|++++. ++.|.+|+++..
T Consensus       301 ~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            23335556778899964  6777777765 589999998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=1e-17  Score=158.81  Aligned_cols=249  Identities=13%  Similarity=0.023  Sum_probs=173.5

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCee---------EEEec--CCCCe-EEEEeC-CCeEEEEeCC--CCceeEEecc-
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVS---------CVAIS--PNSIF-AVSGSE-DNTAKVWGLT--LGSVVSTFKS-   66 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~~-l~~~~~-dg~v~iwd~~--~~~~~~~~~~-   66 (392)
                      +.++...||....+.....+..|...+.         ...|+  ||+++ |+.++. +..|.++++.  .......+.. 
T Consensus        44 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~  123 (662)
T 3azo_A           44 AEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPV  123 (662)
T ss_dssp             TTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCC
T ss_pred             ccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCC
Confidence            4577899998655555667777776666         66666  99998 776654 5667777765  2033445554 


Q ss_pred             ----cccceEEEEEecCCCEEEEEeCC----------CeEEEEEcCC------ceeeeec---ccceeEEEEeCCCCEEE
Q psy17243         67 ----HQSTILAVAVLSDSRRVVTSDKA----------GVIAVWVADN------AQLLYSA---LGPSKCLTVTHNMKYIV  123 (392)
Q Consensus        67 ----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~------~~~~~~~---~~~~~~~~~~~~~~~l~  123 (392)
                          |...+..++|+|||+.|++++.+          ..|++||+.+      ++.....   ...+..+.|+|||++|+
T Consensus       124 ~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la  203 (662)
T 3azo_A          124 SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAV  203 (662)
T ss_dssp             CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEE
T ss_pred             ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEE
Confidence                56788999999999999998876          5899999988      5443322   23566789999999999


Q ss_pred             EecCC--------CcEEEEeCC-CCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCC--cEEEEEcCCCeEEEEEec
Q psy17243        124 SGDGD--------NSLRIWPTS-PQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM--SLKVWQVVGGKLAQVLVG  192 (392)
Q Consensus       124 ~~~~d--------~~i~~~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~  192 (392)
                      .++.+        ..|++||+. ++...........+...+..+.|+||+++++++..++  .|.+||+.+++.......
T Consensus       204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~  283 (662)
T 3azo_A          204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR  283 (662)
T ss_dssp             EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC
T ss_pred             EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc
Confidence            87754        379999997 2311122333334567899999999999888888888  677777766665443333


Q ss_pred             CCCc--------eeEEEEecCCCcEEEEecCCCeEEEE--ECCCCceeeeecccccceeEE-EEcCCCeEEEE
Q psy17243        193 HTDH--------VSCVAVAVTNKSLVVSGSKDSNLIVW--DMETGGEEHFLAGHLGCVTCV-KLAGDGTVAMS  254 (392)
Q Consensus       193 ~~~~--------v~~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~-~~~~dg~~~~~  254 (392)
                      +...        +..++|+ +++.++++++. +.++||  |+.+++ +..+..+...+..+ +++++..+++.
T Consensus       284 ~~~~~~p~w~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~  353 (662)
T 3azo_A          284 EEEFAGPLWTPGMRWFAPL-ANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVA  353 (662)
T ss_dssp             SSBSSCCCCSTTCCSEEEC-TTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEE
T ss_pred             cccccCccccccCceEeEe-CCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEE
Confidence            3222        4578888 67788888888 999999  655554 66777777777777 55554444443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=8.1e-18  Score=161.15  Aligned_cols=247  Identities=10%  Similarity=0.035  Sum_probs=168.5

Q ss_pred             CCeEEEEECCCccceeeeccCCcC-----eeEEEecCCCCeEEEEeCC---------CeEEEEeCCCCceeEEecccccc
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNT-----VSCVAISPNSIFAVSGSED---------NTAKVWGLTLGSVVSTFKSHQST   70 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~   70 (392)
                      |+.|++||+.+++....+.+|...     ...+.|||||++|+.++.+         +.+.+||+++++.. .+..+...
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~  113 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNN  113 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTT
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCc
Confidence            889999999999988777777643     2347889999999998876         56779999998765 45667788


Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc-c--------------------ceeEEEEeCCCCEEEEecCCC
Q psy17243         71 ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL-G--------------------PSKCLTVTHNMKYIVSGDGDN  129 (392)
Q Consensus        71 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~l~~~~~d~  129 (392)
                      +...+|+|||+.|+.+. ++.|++|++.+++..+... +                    ....+.|+|||+.|+....|.
T Consensus       114 ~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~  192 (740)
T 4a5s_A          114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (740)
T ss_dssp             EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             ceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcc
Confidence            99999999999998884 6899999998876543211 1                    113488999999999875321


Q ss_pred             ------------------------------------cEEEEeCCC---CCCCCcceeee-----ccccceEEEEEEcCCC
Q psy17243        130 ------------------------------------SLRIWPTSP---QTHKDDERFTV-----SHSEEITCFTVTWDSQ  165 (392)
Q Consensus       130 ------------------------------------~i~~~d~~~---~~~~~~~~~~~-----~~~~~v~~~~~~~~~~  165 (392)
                                                          .|++||+.+   +..........     .+...+..++|+||++
T Consensus       193 ~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~  272 (740)
T 4a5s_A          193 TEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER  272 (740)
T ss_dssp             TTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE
T ss_pred             cCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe
Confidence                                                477888875   42112222221     2667789999999998


Q ss_pred             EEEEeeC----CCcEEEEEcCCCe----EE--EEE--ecCCCcee-----EEEEecCCCcEEE-Eec-CC--CeEEEEEC
Q psy17243        166 YLITGSR----DMSLKVWQVVGGK----LA--QVL--VGHTDHVS-----CVAVAVTNKSLVV-SGS-KD--SNLIVWDM  224 (392)
Q Consensus       166 ~l~~~~~----dg~i~i~d~~~~~----~~--~~~--~~~~~~v~-----~~~~~~~~~~~l~-~~~-~d--g~i~iwd~  224 (392)
                      .++....    +..|.+||+.+++    +.  ..+  ..|...+.     ...|+| ++..++ ..+ .+  ..|++||+
T Consensus       273 ~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          273 ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICYFQI  351 (740)
T ss_dssp             EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEEEET
T ss_pred             EEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEEEEC
Confidence            6665432    3479999998886    21  122  34555554     688994 555444 444 44  45888998


Q ss_pred             CCCceeeeecccccceeEEE-EcCCCeEEEEcC
Q psy17243        225 ETGGEEHFLAGHLGCVTCVK-LAGDGTVAMSDL  256 (392)
Q Consensus       225 ~~~~~~~~~~~~~~~v~~~~-~~~dg~~~~~~~  256 (392)
                      .+++... +......+..+. ++ ++.++..+.
T Consensus       352 ~~~~~~~-lT~g~~~v~~~~~~d-~~~i~f~~~  382 (740)
T 4a5s_A          352 DKKDCTF-ITKGTWEVIGIEALT-SDYLYYISN  382 (740)
T ss_dssp             TCSSCEE-SCCSSSCEEEEEEEC-SSEEEEEES
T ss_pred             CCCceEe-cccCCEEEEEEEEEe-CCEEEEEEe
Confidence            8766544 333344555544 33 344444443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.80  E-value=3.1e-16  Score=135.69  Aligned_cols=242  Identities=10%  Similarity=0.006  Sum_probs=171.2

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCE
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      +.++.++.|   .++....+..+...+.+++|+|++++++++..++.|.+||.++++.......+...+.+++++|++++
T Consensus        24 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l  100 (333)
T 2dg1_A           24 ISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRL  100 (333)
T ss_dssp             CCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCE
T ss_pred             eecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcE
Confidence            345667777   34455666667778899999999998778888999999999888766555446678999999999988


Q ss_pred             EEEEeCC----CeEEEEEcCCceeeeec-----ccceeEEEEeCCCCEEEEecC------CCcEEEEeCCCCCCCCccee
Q psy17243         83 VVTSDKA----GVIAVWVADNAQLLYSA-----LGPSKCLTVTHNMKYIVSGDG------DNSLRIWPTSPQTHKDDERF  147 (392)
Q Consensus        83 l~~~~~d----~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~  147 (392)
                      +++...+    +.|.+||..+++.....     ...+..+.++|+++.+++...      .+.|..+|.....    ...
T Consensus       101 ~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~----~~~  176 (333)
T 2dg1_A          101 FVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT----VTP  176 (333)
T ss_dssp             EEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC----EEE
T ss_pred             EEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE----EEE
Confidence            8777666    68999999887654221     235678999999987776653      3556666654221    111


Q ss_pred             eeccccceEEEEEEcCCCEEEEe-eCCCcEEEEEcCC-CeEEEE--------EecCCCceeEEEEecCCCcEEEEecCCC
Q psy17243        148 TVSHSEEITCFTVTWDSQYLITG-SRDMSLKVWQVVG-GKLAQV--------LVGHTDHVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~--------~~~~~~~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                      .......+..++|+|+++.|+.+ ..++.|.+||+.+ ++.+..        +.++ ..+..++++ +++.++++...++
T Consensus       177 ~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d-~~G~l~v~~~~~~  254 (333)
T 2dg1_A          177 IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCID-SDDNLYVAMYGQG  254 (333)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEB-TTCCEEEEEETTT
T ss_pred             eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEEC-CCCCEEEEEcCCC
Confidence            11233457889999999866544 5578999999964 332211        1112 367789999 6677777777789


Q ss_pred             eEEEEECCCCceeeeeccccc------ceeEEEEcCCCeEEEE
Q psy17243        218 NLIVWDMETGGEEHFLAGHLG------CVTCVKLAGDGTVAMS  254 (392)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~------~v~~~~~~~dg~~~~~  254 (392)
                      .|.+||. +++.+..+..+..      .+.+++|++|+..+..
T Consensus       255 ~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v  296 (333)
T 2dg1_A          255 RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII  296 (333)
T ss_dssp             EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred             EEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEE
Confidence            9999998 5666666654433      6899999999855543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.79  E-value=5.9e-17  Score=141.03  Aligned_cols=228  Identities=10%  Similarity=0.067  Sum_probs=158.2

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC---C--eEEEEeCCCCceeEEecccccceEEEEEec
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED---N--TAKVWGLTLGSVVSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~   78 (392)
                      .++.|.+||+.+++.. .+    ..+..++|+|||++|+..+.+   +  .|.+|++.+++....... .. +..+.|+|
T Consensus        41 ~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wsp  113 (347)
T 2gop_A           41 YENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNE  113 (347)
T ss_dssp             EEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECT
T ss_pred             ccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECC
Confidence            3678999999887643 33    568899999999999887654   3  488889888876655543 34 99999999


Q ss_pred             CCCEEEEEeCC---------------------------CeEEEEEcCCceeeeecc-cceeEEEEeCCCCEEEEecCCC-
Q psy17243         79 DSRRVVTSDKA---------------------------GVIAVWVADNAQLLYSAL-GPSKCLTVTHNMKYIVSGDGDN-  129 (392)
Q Consensus        79 ~~~~l~~~~~d---------------------------~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~-  129 (392)
                      +++.|+.++.+                           ..|++||+.+++.+..+. ..+..+.|+|++ .++++..+. 
T Consensus       114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~  192 (347)
T 2gop_A          114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREI  192 (347)
T ss_dssp             TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCS
T ss_pred             CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecccc
Confidence            99998887632                           579999998887622221 267788999999 777775542 


Q ss_pred             ------cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC--------CcEEEEEcCCCeEEEEEecCCC
Q psy17243        130 ------SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD--------MSLKVWQVVGGKLAQVLVGHTD  195 (392)
Q Consensus       130 ------~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~  195 (392)
                            ...+|.+..+.   ..... .+ ..+..+  +|+|++|+.++.+        ..|.+||  +++.......+..
T Consensus       193 ~~~~~~~~~l~~~d~~~---~~~l~-~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~  263 (347)
T 2gop_A          193 IPQYFKFWDIYIWEDGK---EEKMF-EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR  263 (347)
T ss_dssp             SCCSSCCEEEEEEETTE---EEEEE-EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS
T ss_pred             cccccccccEEEeCCCc---eEEec-cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc
Confidence                  34455443211   11122 23 444444  9999988877643        4688888  5555444455667


Q ss_pred             ceeE-EEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        196 HVSC-VAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       196 ~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      .+.. +.|+  ++ ++++++.++.++|| +.+++.. .+..+...|.+++|+|  .++++.
T Consensus       264 ~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~  317 (347)
T 2gop_A          264 GVGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLK  317 (347)
T ss_dssp             EEEEEEEET--TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEE
T ss_pred             ccCCccEEc--Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEE
Confidence            7876 8887  45 88888999999999 8766554 3444577899999999  444443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=3.4e-16  Score=133.04  Aligned_cols=228  Identities=8%  Similarity=-0.005  Sum_probs=168.9

Q ss_pred             ccceeeeccCCcCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAV   94 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   94 (392)
                      +..+..+..+.....+++|+|+++ +++++..++.|..||..++  ...+..+...+.+++++++++.+++...++.|.+
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER   94 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence            344555666677788999999998 7788888999999999877  5666667778999999999998877777789999


Q ss_pred             EEcCCceeeeecc-------cceeEEEEeCCCCEEEE----ec-------------CCCcEEEEeCCCCCCCCcceeeec
Q psy17243         95 WVADNAQLLYSAL-------GPSKCLTVTHNMKYIVS----GD-------------GDNSLRIWPTSPQTHKDDERFTVS  150 (392)
Q Consensus        95 wd~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~----~~-------------~d~~i~~~d~~~~~~~~~~~~~~~  150 (392)
                      ||..+++......       ..+..++++|+|+++++    ++             ..+.|..++..     ........
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-----g~~~~~~~  169 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-----GTLSAPIR  169 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-----SCEEEEEC
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-----CCEEEeec
Confidence            9997776533211       13457999999998887    33             13456555543     12222334


Q ss_pred             cccceEEEEEEcCCCEEEEeeCCCcEEEEEcC-CCeE---EEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVV-GGKL---AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      +......++|+|+++.+++.+.++.|.+|++. +++.   ...+..+...+..++++ ++++++++.  ++.|.+||.. 
T Consensus       170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~--~~~v~~~~~~-  245 (296)
T 3e5z_A          170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD-AGGLIWASA--GDGVHVLTPD-  245 (296)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB-TTSCEEEEE--TTEEEEECTT-
T ss_pred             CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC-CCCCEEEEc--CCeEEEECCC-
Confidence            55667899999999988777778999999996 4544   23333345567789999 667766665  8899999986 


Q ss_pred             CceeeeecccccceeEEEE-cCCCeEEEEc
Q psy17243        227 GGEEHFLAGHLGCVTCVKL-AGDGTVAMSD  255 (392)
Q Consensus       227 ~~~~~~~~~~~~~v~~~~~-~~dg~~~~~~  255 (392)
                      ++.+..+..+.. +.+++| .|+++.+..+
T Consensus       246 g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~  274 (296)
T 3e5z_A          246 GDELGRVLTPQT-TSNLCFGGPEGRTLYMT  274 (296)
T ss_dssp             SCEEEEEECSSC-CCEEEEESTTSCEEEEE
T ss_pred             CCEEEEEECCCC-ceeEEEECCCCCEEEEE
Confidence            788878877777 999999 5888766654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=2.7e-18  Score=152.20  Aligned_cols=239  Identities=7%  Similarity=-0.084  Sum_probs=158.6

Q ss_pred             EEEECCCccceeeeccCCcC-----eeEEEecCCCCeEEEEeCC---CeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          9 NVWQMNSHELQSTMEGHLNT-----VSCVAISPNSIFAVSGSED---NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         9 ~vwd~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ...|..+++.+..+..+...     +..++|+|+|++|+.....   ..|.+||+.+++.......+......+.|+|++
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg   92 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE   92 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence            34577888877777765444     7889999999998876543   478889998887654443333223347899999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeecc--cc-eeE-------------------EEEeCCCCEEEEe-----cCCCcEEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSAL--GP-SKC-------------------LTVTHNMKYIVSG-----DGDNSLRI  133 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~-~~~-------------------~~~~~~~~~l~~~-----~~d~~i~~  133 (392)
                      +.|+.++.++.|++||+.+++......  .. ...                   ..++|+++.++..     ..+..|.+
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence            999999999999999998876543222  11 111                   2456677666554     35668999


Q ss_pred             EeCCCCCCCCcceeeeccccceEEEEEEc-CCCEEEEeeCC------CcEEEEEcCCCeEEEEEecC--CCceeEEEEec
Q psy17243        134 WPTSPQTHKDDERFTVSHSEEITCFTVTW-DSQYLITGSRD------MSLKVWQVVGGKLAQVLVGH--TDHVSCVAVAV  204 (392)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~  204 (392)
                      ||+.++..    .....+...+..+.|+| +++.|+..+.+      ..|.+||+..++.. .+..+  ...+..++|+ 
T Consensus       173 ~d~~~g~~----~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~s-  246 (396)
T 3c5m_A          173 VDIETGEL----EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWI-  246 (396)
T ss_dssp             EETTTCCE----EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEEC-
T ss_pred             EECCCCcE----EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEEC-
Confidence            99875332    22224567788999999 78777665543      46889998765533 33323  2357788999 


Q ss_pred             CCCcEEEEecCC-----CeEEEEECCCCceeeeecccccceeEEEEcC-CCeEEEEcC
Q psy17243        205 TNKSLVVSGSKD-----SNLIVWDMETGGEEHFLAGHLGCVTCVKLAG-DGTVAMSDL  256 (392)
Q Consensus       205 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-dg~~~~~~~  256 (392)
                      +++..|+.++.+     +.|++||+.+++....... . ... +.|+| ||++++...
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEE
T ss_pred             CCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEec
Confidence            455544444332     4599999988875432221 1 123 88999 999888743

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=7.5e-16  Score=130.21  Aligned_cols=224  Identities=18%  Similarity=0.237  Sum_probs=165.2

Q ss_pred             cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc------cccceEEEEEe-cCCCEEEEEeC-CCeEEEE
Q psy17243         24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS------HQSTILAVAVL-SDSRRVVTSDK-AGVIAVW   95 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~l~~~~~-d~~i~iw   95 (392)
                      ++-....+++++++++++++...++.|.+||.+ ++.+..+..      +...+..+++. ++++.+++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            456778999999999988888889999999977 666666542      33568899995 56655555433 8899999


Q ss_pred             EcCCceeeeecc----cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeee-ccccceEEEEEEcCCCEEEEe
Q psy17243         96 VADNAQLLYSAL----GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV-SHSEEITCFTVTWDSQYLITG  170 (392)
Q Consensus        96 d~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~  170 (392)
                      | .+++.+..+.    .....++++++++.+++...++.|.+||...   ........ .+...+..++++++++++++.
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---NVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC---CEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            9 5555554432    3567899999999888878889999999642   11111111 234568999999999877777


Q ss_pred             eCCCcEEEEEcCCCeEEEEEecC--CCceeEEEEecCCCcEEEEecCCC-eEEEEECCCCceeeeeccccc--ceeEEEE
Q psy17243        171 SRDMSLKVWQVVGGKLAQVLVGH--TDHVSCVAVAVTNKSLVVSGSKDS-NLIVWDMETGGEEHFLAGHLG--CVTCVKL  245 (392)
Q Consensus       171 ~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~--~v~~~~~  245 (392)
                      ..++.|++||. +++.+..+..+  ...+..++++ +++.++++...++ .|.+||. +++.+..+..+..  .+.++++
T Consensus       182 ~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d-~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~  258 (286)
T 1q7f_A          182 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGIN-SNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL  258 (286)
T ss_dssp             GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEEC-TTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred             CCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEEC-CCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence            77899999997 45566666433  3578899999 5678888887776 9999995 5666666654433  4779999


Q ss_pred             cCCCeEEEEc
Q psy17243        246 AGDGTVAMSD  255 (392)
Q Consensus       246 ~~dg~~~~~~  255 (392)
                      +|+|++++++
T Consensus       259 ~~~g~l~vs~  268 (286)
T 1q7f_A          259 MDDGSVVLAS  268 (286)
T ss_dssp             ETTTEEEEEE
T ss_pred             CCCCcEEEEC
Confidence            9999988875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=1.5e-17  Score=147.44  Aligned_cols=245  Identities=9%  Similarity=-0.087  Sum_probs=163.5

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEE-----------
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILA-----------   73 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-----------   73 (392)
                      +..|.+||+.+++......++......+.|+|++++|+.++.++.|.+||+.+++.......+......           
T Consensus        59 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~  138 (396)
T 3c5m_A           59 NRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTK  138 (396)
T ss_dssp             SCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSE
T ss_pred             CceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCc
Confidence            347888899887765444433333444889999999999999999999999988766555534332222           


Q ss_pred             --------EEEecCCCEEEEE-----eCCCeEEEEEcCCceeee--ecccceeEEEEeC-CCCEEEEecCC------CcE
Q psy17243         74 --------VAVLSDSRRVVTS-----DKAGVIAVWVADNAQLLY--SALGPSKCLTVTH-NMKYIVSGDGD------NSL  131 (392)
Q Consensus        74 --------~~~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~-~~~~l~~~~~d------~~i  131 (392)
                              +.|+|+++.++..     ..+..|.+||+.+++...  .....+..+.|+| ++..|+..+.+      ..|
T Consensus       139 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l  218 (396)
T 3c5m_A          139 LVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM  218 (396)
T ss_dssp             EEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred             cccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence                    2456666665543     356689999998876543  3334567889999 78877766543      468


Q ss_pred             EEEeCCCCCCCCcceeeecc-ccceEEEEEEcCCCEEEEeeCC-----CcEEEEEcCCCeEEEEEecCCCceeEEEEecC
Q psy17243        132 RIWPTSPQTHKDDERFTVSH-SEEITCFTVTWDSQYLITGSRD-----MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT  205 (392)
Q Consensus       132 ~~~d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  205 (392)
                      .+||+......   ...... ...+..++|+|++++|+..+.+     +.|++||+.+++...... .. ... +.|+|+
T Consensus       219 ~~~d~~~~~~~---~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~  292 (396)
T 3c5m_A          219 WLVNEDGSNVR---KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNF  292 (396)
T ss_dssp             EEEETTSCCCE---ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECS
T ss_pred             EEEECCCCcee---EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCC
Confidence            88887633211   111111 3357889999999987766543     449999998886544332 22 233 889953


Q ss_pred             CCcEEEEec----------------CCCeEEEEECCCCceeeeeccccc-----------ceeEEEEcCCCeEEEEcC
Q psy17243        206 NKSLVVSGS----------------KDSNLIVWDMETGGEEHFLAGHLG-----------CVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       206 ~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~~~dg~~~~~~~  256 (392)
                      ++.+++.++                .+..|++||+.+++.. .+..+..           .+..++|+|||+.++...
T Consensus       293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s  369 (396)
T 3c5m_A          293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS  369 (396)
T ss_dssp             SSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             CCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence            677777644                3478999999887643 3444443           256789999999887754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.77  E-value=7.3e-16  Score=128.95  Aligned_cols=225  Identities=10%  Similarity=0.029  Sum_probs=168.6

Q ss_pred             CCccCCeEEEEECCCccceeeeccCC-cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccc-cceEEEEEec
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHL-NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQ-STILAVAVLS   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~   78 (392)
                      +++.|+.|.+||.++++.+.++..+. ..+.++.++|+|++|+  +.++.|..||. +++.+.++..+. ..+.++.+.+
T Consensus        10 ~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~   86 (276)
T 3no2_A           10 GGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP   86 (276)
T ss_dssp             ECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT
T ss_pred             eeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC
Confidence            36789999999999999999998776 5789999999999888  35788999998 899998888653 5788999999


Q ss_pred             CCCEEEEEeC-CCeEEEEEcCCceeeeecc---------cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee
Q psy17243         79 DSRRVVTSDK-AGVIAVWVADNAQLLYSAL---------GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        79 ~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      +|+.+++.+. ++.+..+|. +++.+....         .....+...++++++++...++.|..||.. ++..  ..+ 
T Consensus        87 dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~--w~~-  161 (276)
T 3no2_A           87 DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL--NSV-  161 (276)
T ss_dssp             TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE--EEE-
T ss_pred             CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE--EEE-
Confidence            9999999887 788888886 565554332         123456788999999999999999999986 3222  112 


Q ss_pred             eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCC------CceeEEEEecCCCcEEEEecCC------
Q psy17243        149 VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT------DHVSCVAVAVTNKSLVVSGSKD------  216 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~~~~d------  216 (392)
                       .....+.++...++++.++++..++.|..+|..+++.+.++..+.      ..+..++.. +++.++++....      
T Consensus       162 -~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~-~~G~i~v~~~~g~~~~~~  239 (276)
T 3no2_A          162 -KLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL-QNGGLYICNWQGHDREAG  239 (276)
T ss_dssp             -ECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC-TTSCEEEEEECTTCTTGG
T ss_pred             -ECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc-CCCCEEEEeccCcccccc
Confidence             222445667788999999999888899999999999998886442      125677777 567777765321      


Q ss_pred             --CeEEEEEC-CCCceeeeecc
Q psy17243        217 --SNLIVWDM-ETGGEEHFLAG  235 (392)
Q Consensus       217 --g~i~iwd~-~~~~~~~~~~~  235 (392)
                        +..+++++ .+++.+.++..
T Consensus       240 ~~~~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          240 KGKHPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             GSCCCSEEEECTTSBEEEEECC
T ss_pred             ccCCceEEEECCCCCEEEEecC
Confidence              13345555 35666555543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.77  E-value=3e-15  Score=137.28  Aligned_cols=248  Identities=10%  Similarity=0.042  Sum_probs=183.2

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCC--CCceeEEecccccceEEEEEe---
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT--LGSVVSTFKSHQSTILAVAVL---   77 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~---   77 (392)
                      ..++.|.++|..+++.+..+.. ...+..+.|+|+++++++++.|+.|.+||+.  +++.+.++.... ....++|+   
T Consensus       174 ~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~  251 (567)
T 1qks_A          174 RDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKME  251 (567)
T ss_dssp             TTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCST
T ss_pred             CCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEcccc
Confidence            4578999999999999988874 3456799999999999999999999999996  888888887533 45799999   


Q ss_pred             -cCCCEEEEEeC-CCeEEEEEcCCceeeeeccc--------------ceeEEEEeCCCCE-EEEecCCCcEEEEeCCCCC
Q psy17243         78 -SDSRRVVTSDK-AGVIAVWVADNAQLLYSALG--------------PSKCLTVTHNMKY-IVSGDGDNSLRIWPTSPQT  140 (392)
Q Consensus        78 -~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~  140 (392)
                       |+|+++++++. ++.+.++|..+.+.+.....              .+..+..++++.. ++....+|.|.++|.....
T Consensus       252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~  331 (567)
T 1qks_A          252 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN  331 (567)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred             CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence             69998887765 48999999999887765431              2346677776554 4445567999999986432


Q ss_pred             CCCcceeeeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEec-----CCCceeEEE-EecCCCcEEEEe
Q psy17243        141 HKDDERFTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVG-----HTDHVSCVA-VAVTNKSLVVSG  213 (392)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~-~~~~~~~~l~~~  213 (392)
                      ...  ............+.|+|++++++++. .++.|.++|+.+++.+..+..     |.+  .... ++|..+.+++++
T Consensus       332 ~~~--v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~  407 (567)
T 1qks_A          332 NLK--TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTFGPVWATS  407 (567)
T ss_dssp             EEE--EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTTEEEEEEE
T ss_pred             cce--eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCCCcEEEeC
Confidence            211  11223345667889999999987766 578999999999988776653     322  2233 454446666655


Q ss_pred             c-CCCeEEEEECCC-------CceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        214 S-KDSNLIVWDMET-------GGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       214 ~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      . .++.|.++|..+       .+.+..+......-..+..+|+++++..+.
T Consensus       408 ~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          408 HMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             CCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence            4 468999999987       567777776544445577899999888764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=2.5e-16  Score=135.87  Aligned_cols=219  Identities=9%  Similarity=0.094  Sum_probs=162.5

Q ss_pred             CCeEEEEECCCccceeeec-cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc-eeEEe---------cccccceEE
Q psy17243          5 DCLVNVWQMNSHELQSTME-GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS-VVSTF---------KSHQSTILA   73 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~---------~~~~~~v~~   73 (392)
                      ++.|.+||..+++....+. ++-.....++++|+++++++...++.|++||.+... .+..+         ..+-.....
T Consensus        68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~  147 (329)
T 3fvz_A           68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD  147 (329)
T ss_dssp             SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred             CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence            3689999999888877664 355678999999999988888889999999976442 45555         233446899


Q ss_pred             EEEec-CCCEEEEEe-CCCeEEEEEcCCceeeeecc-------------cceeEEEEeCC-CCEEEEecCCCcEEEEeCC
Q psy17243         74 VAVLS-DSRRVVTSD-KAGVIAVWVADNAQLLYSAL-------------GPSKCLTVTHN-MKYIVSGDGDNSLRIWPTS  137 (392)
Q Consensus        74 ~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~-------------~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~  137 (392)
                      ++++| ++..+++.+ .++.|++|+ .+++.+..+.             .....++++|+ +.++++...++.|++|+..
T Consensus       148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            99999 787777776 689999999 4555544432             12678999998 7777777788999999987


Q ss_pred             CCCCCCcceeeeccccceEEEEEEc------CCCEEEEeeCCCcEEEEEcCCCeEEEEEe---cCCCceeEEEEecCCCc
Q psy17243        138 PQTHKDDERFTVSHSEEITCFTVTW------DSQYLITGSRDMSLKVWQVVGGKLAQVLV---GHTDHVSCVAVAVTNKS  208 (392)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~  208 (392)
                      +++...... ...+...+..++++|      +++.+++...+..|++||..+++.+..+.   ++...+..++++ +++.
T Consensus       227 ~G~~~~~~~-~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~-~dG~  304 (329)
T 3fvz_A          227 TKEFVREIK-HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS-EDGT  304 (329)
T ss_dssp             TCCEEEEEC-CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEEC-TTSE
T ss_pred             CCcEEEEEe-ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEEC-CCCC
Confidence            433221111 123456778889998      33333333345689999999999888873   566778999999 5668


Q ss_pred             EEEEecCCCeEEEEECCC
Q psy17243        209 LVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       209 ~l~~~~~dg~i~iwd~~~  226 (392)
                      ++++...++.|++|++..
T Consensus       305 lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          305 VYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEESSSCCEEEEEEEE
T ss_pred             EEEEECCCCEEEEEeCCc
Confidence            889988999999999763

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.76  E-value=1.2e-15  Score=145.62  Aligned_cols=226  Identities=14%  Similarity=0.044  Sum_probs=163.5

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCC-----eEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCe--------
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDN-----TAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGV--------   91 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------   91 (392)
                      |...+..++|||||++|+.++.++     .|++||+.+++....... ...+..++|+||++.|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence            445688999999999998765543     899999999987764332 233678999999999999888765        


Q ss_pred             --------EEEEEcCCce----eeeecc---cceeEEEEeCCCCEEEEecC-----CCcEEEEeCCCCC----CCCccee
Q psy17243         92 --------IAVWVADNAQ----LLYSAL---GPSKCLTVTHNMKYIVSGDG-----DNSLRIWPTSPQT----HKDDERF  147 (392)
Q Consensus        92 --------i~iwd~~~~~----~~~~~~---~~~~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~----~~~~~~~  147 (392)
                              |++|++.+++    .+....   .....+.++|++++|+....     +..|++||+....    .......
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                    9999998875    232322   23568899999999988764     5789999986410    0112222


Q ss_pred             eeccccceEEEEEEcCCCEEEEeeCC----CcEEEEEcCCCe--EEEEEecCCC--ceeEEEEecCCCcEEEEecCCCe-
Q psy17243        148 TVSHSEEITCFTVTWDSQYLITGSRD----MSLKVWQVVGGK--LAQVLVGHTD--HVSCVAVAVTNKSLVVSGSKDSN-  218 (392)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~-  218 (392)
                      ...+...+.. .|+++++.|+..+..    +.|.+||+.+++  ....+..|..  .+..++|+ +++.++++...|+. 
T Consensus       282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEE
T ss_pred             eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEECCEE
Confidence            3344444444 488898887776653    369999998764  2344555544  67788898 67888888888885 


Q ss_pred             -EEEEECCCCceeeeecccccceeEEEEcCCCeEEE
Q psy17243        219 -LIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       219 -i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~  253 (392)
                       |.+|++.+++.+..+..+.+.+..++++|++..++
T Consensus       360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence             66778877887778877777889999999886555

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=1.9e-15  Score=127.79  Aligned_cols=216  Identities=15%  Similarity=0.195  Sum_probs=158.1

Q ss_pred             ccCCeEEEEECCCccceeeec------cCCcCeeEEEe-cCCCCeEEEEeC-CCeEEEEeCCCCceeEEecc-cccceEE
Q psy17243          3 GMDCLVNVWQMNSHELQSTME------GHLNTVSCVAI-SPNSIFAVSGSE-DNTAKVWGLTLGSVVSTFKS-HQSTILA   73 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~------~h~~~v~~~~~-~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~-~~~~v~~   73 (392)
                      ..++.|.+||.+ ++.+..+.      +|...+..+++ .+++.++++... ++.|.+|| .+++.+..+.. +...+..
T Consensus        48 ~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~  125 (286)
T 1q7f_A           48 TNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRG  125 (286)
T ss_dssp             GGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEE
T ss_pred             CCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceE
Confidence            457889999977 55555553      24467899999 467776666543 78999999 66777766643 3456899


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCceeeeec-----ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee
Q psy17243         74 VAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      +++.++++.+++...++.|.+||... +.+..+     ......++++++++.+++...++.|++||....    .....
T Consensus       126 i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----~~~~~  200 (286)
T 1q7f_A          126 VTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ----YLRQI  200 (286)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC----EEEEE
T ss_pred             EEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC----EEEEE
Confidence            99999999888777889999999654 443332     134678999999998888788999999997421    11111


Q ss_pred             e--ccccceEEEEEEcCCCEEEEeeCCC-cEEEEEcCCCeEEEEEecCCC--ceeEEEEecCCCcEEEEecCCCeEEEEE
Q psy17243        149 V--SHSEEITCFTVTWDSQYLITGSRDM-SLKVWQVVGGKLAQVLVGHTD--HVSCVAVAVTNKSLVVSGSKDSNLIVWD  223 (392)
Q Consensus       149 ~--~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd  223 (392)
                      .  ++...+..++++++++++++...++ .|.+||. +++.+..+..+..  .+..++++ ++++++++ +.|+.|++|+
T Consensus       201 ~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~-~~g~l~vs-~~~~~v~v~~  277 (286)
T 1q7f_A          201 GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM-DDGSVVLA-SKDYRLYIYR  277 (286)
T ss_dssp             SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE-TTTEEEEE-ETTTEEEEEE
T ss_pred             ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC-CCCcEEEE-CCCCeEEEEE
Confidence            1  1235688999999998888887775 9999995 5666666655433  46789999 56777777 5699999999


Q ss_pred             CCCCc
Q psy17243        224 METGG  228 (392)
Q Consensus       224 ~~~~~  228 (392)
                      +....
T Consensus       278 ~~~~~  282 (286)
T 1q7f_A          278 YVQLA  282 (286)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            86543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.76  E-value=6.1e-16  Score=146.57  Aligned_cols=238  Identities=14%  Similarity=0.070  Sum_probs=168.2

Q ss_pred             eeeeccCCcCeeEEEecCCCCeEEEE--eCCCeEEEEeCCCCceeEEecccccceE---------EEEEe--cCCCE-EE
Q psy17243         19 QSTMEGHLNTVSCVAISPNSIFAVSG--SEDNTAKVWGLTLGSVVSTFKSHQSTIL---------AVAVL--SDSRR-VV   84 (392)
Q Consensus        19 ~~~~~~h~~~v~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~   84 (392)
                      ...+.+|...+..++|+++..+++..  +.++...||....+.....+..+...+.         ...|+  ||++. |+
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            34566799999999999887677776  5688999999655555667766666665         66676  99988 76


Q ss_pred             EEeC-CCeEEEEEcC--C-cee--eee-----cccceeEEEEeCCCCEEEEecCC----------CcEEEEeCCCCCCC-
Q psy17243         85 TSDK-AGVIAVWVAD--N-AQL--LYS-----ALGPSKCLTVTHNMKYIVSGDGD----------NSLRIWPTSPQTHK-  142 (392)
Q Consensus        85 ~~~~-d~~i~iwd~~--~-~~~--~~~-----~~~~~~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~-  142 (392)
                      .++. +..|.++++.  . ++.  +..     ....+..++|+|+++.|++++.+          ..|++||+...... 
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            6554 5677777776  3 432  222     22356789999999999998876          58999999751000 


Q ss_pred             -Ccceeee-ccccceEEEEEEcCCCEEEEeeCC--------CcEEEEEcC-CC---eEEEEEecCCCceeEEEEecCCCc
Q psy17243        143 -DDERFTV-SHSEEITCFTVTWDSQYLITGSRD--------MSLKVWQVV-GG---KLAQVLVGHTDHVSCVAVAVTNKS  208 (392)
Q Consensus       143 -~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~  208 (392)
                       ....... .+...+..++|+|||++|+.++.+        ..|++||+. ++   +.......|...+..+.|+ ++++
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s-pdg~  254 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA-PDGS  254 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC-TTSC
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC-CCCe
Confidence             1122222 345677788999999999887754        379999998 56   4444445567889999999 5555


Q ss_pred             EEEEecCCC--eEEEEECCCCceeeeecccccc--------eeEEEEcCCCeEEEEcCC
Q psy17243        209 LVVSGSKDS--NLIVWDMETGGEEHFLAGHLGC--------VTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       209 ~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~dg~~~~~~~~  257 (392)
                      ++++++.++  .|.+||+.+++.......+...        +..++|+++++++++...
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~  313 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK  313 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence            888888888  6777777677655444433222        567899999999888753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.74  E-value=1.5e-15  Score=127.05  Aligned_cols=213  Identities=10%  Similarity=0.041  Sum_probs=166.2

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeEEecccc-cceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc----cee
Q psy17243         37 NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQ-STILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSK  111 (392)
Q Consensus        37 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~  111 (392)
                      .+++|++++.++.|.+||.++|+.+.++..+. ..+.++.+.|+|+.++  +.++.|..||. +++.+..+..    .+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            35789999999999999999999999998765 4789999999999888  45788999999 7887776653    456


Q ss_pred             EEEEeCCCCEEEEecC-CCcEEEEeCCCCCCCCcceeee---ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEE
Q psy17243        112 CLTVTHNMKYIVSGDG-DNSLRIWPTSPQTHKDDERFTV---SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA  187 (392)
Q Consensus       112 ~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  187 (392)
                      ++.+.++++++++.+. ++.|..+|.. ++.........   .+......+++.++++++++...++.|..||.. ++.+
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            7888999999999887 7778777753 22111111110   112234556788999999999999999999987 9998


Q ss_pred             EEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccc------cceeEEEEcCCCeEEEEcC
Q psy17243        188 QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL------GCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       188 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~dg~~~~~~~  256 (392)
                      ..+... ..+..+... +++++++++..++.|..+|..+++.+.++....      ..+..++..++|.+++.+.
T Consensus       159 w~~~~~-~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          159 NSVKLS-GTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEECS-SCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEECC-CCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            888754 345566777 678888888888899999999999988886432      2378889999999999874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.73  E-value=9.6e-16  Score=132.04  Aligned_cols=223  Identities=9%  Similarity=-0.001  Sum_probs=165.6

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccc-----cceEEEEEec
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQ-----STILAVAVLS   78 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~   78 (392)
                      .++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||..+++....+....     .....+++  
T Consensus        62 ~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--  138 (328)
T 3dsm_A           62 NSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--  138 (328)
T ss_dssp             GGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--
T ss_pred             CCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--
Confidence            46899999999999988886 45678899999988544444488999999999998887776433     14456777  


Q ss_pred             CCCEEEEEe--CCCeEEEEEcCCceeeeeccc--ceeEEEEeCCCCEEEEecCC----------CcEEEEeCCCCCCCCc
Q psy17243         79 DSRRVVTSD--KAGVIAVWVADNAQLLYSALG--PSKCLTVTHNMKYIVSGDGD----------NSLRIWPTSPQTHKDD  144 (392)
Q Consensus        79 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~  144 (392)
                      ++..++++.  .++.|.++|+.+++.+.....  ....+.+++++++++++..+          +.|.++|..+.+....
T Consensus       139 ~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~  218 (328)
T 3dsm_A          139 YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ  218 (328)
T ss_dssp             ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred             ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence            344555555  488999999999987765432  44678899999877776654          7899999875432211


Q ss_pred             ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEE--EecCCCceeEEEEecCCCcEEEEe----cCCCe
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV--LVGHTDHVSCVAVAVTNKSLVVSG----SKDSN  218 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~----~~dg~  218 (392)
                        ...........++++|++++|+++..  .|.+||..+++....  +.........++++|.++.++++.    ..++.
T Consensus       219 --~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~  294 (328)
T 3dsm_A          219 --FKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI  294 (328)
T ss_dssp             --EECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred             --EecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE
Confidence              11122346789999999999988765  899999988775321  121235678999997678888887    67899


Q ss_pred             EEEEECCCCceeeeec
Q psy17243        219 LIVWDMETGGEEHFLA  234 (392)
Q Consensus       219 i~iwd~~~~~~~~~~~  234 (392)
                      |.+||.. ++.+..+.
T Consensus       295 V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          295 VYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEEECTT-CCEEEEEE
T ss_pred             EEEECCC-CCEEEEEE
Confidence            9999998 88887775

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.73  E-value=9e-15  Score=125.96  Aligned_cols=242  Identities=10%  Similarity=-0.005  Sum_probs=171.3

Q ss_pred             CccCCeEEEEECCCccceeeec------cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTME------GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVA   75 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~   75 (392)
                      |+.++.|.++|.++++....+.      ........+.+. +++++++...++.|.+||..+++.+.++. .......++
T Consensus        13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~   90 (328)
T 3dsm_A           13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIH   90 (328)
T ss_dssp             TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred             CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence            4568999999999988776542      122345677775 34555666668999999999999988886 356688999


Q ss_pred             EecCCCEEEEEe-CCCeEEEEEcCCceeeeecc--c------ceeEEEEeCCCCEEEEec--CCCcEEEEeCCCCCCCCc
Q psy17243         76 VLSDSRRVVTSD-KAGVIAVWVADNAQLLYSAL--G------PSKCLTVTHNMKYIVSGD--GDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        76 ~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~--~------~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~  144 (392)
                      +++++ .++++. .++.|.+||+.+++......  .      ....+++  ++..++++.  .++.|.++|+.+.+....
T Consensus        91 ~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~  167 (328)
T 3dsm_A           91 FLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDE  167 (328)
T ss_dssp             EEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEE
T ss_pred             EeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEE
Confidence            99998 455555 88999999999988765433  2      3446666  344555554  488999999975433221


Q ss_pred             ceeeeccccceEEEEEEcCCCEEEEeeCC----------CcEEEEEcCCCeEEEEEecC-CCceeEEEEecCCCcEEEEe
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQYLITGSRD----------MSLKVWQVVGGKLAQVLVGH-TDHVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~  213 (392)
                      .    ........++++|++++++++..+          +.|.++|..+++....+... ......++++| ++..|+.+
T Consensus       168 i----~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~  242 (328)
T 3dsm_A          168 L----TIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWI  242 (328)
T ss_dssp             E----ECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEE
T ss_pred             E----EcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEE
Confidence            1    223345678899999877776654          78999999999887776532 23678999994 55555555


Q ss_pred             cCCCeEEEEECCCCceee--eecccccceeEEEEcC-CCeEEEEc
Q psy17243        214 SKDSNLIVWDMETGGEEH--FLAGHLGCVTCVKLAG-DGTVAMSD  255 (392)
Q Consensus       214 ~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~-dg~~~~~~  255 (392)
                      ..  .|.+||..+++...  .+.........++++| ++.+.+++
T Consensus       243 ~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          243 NN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             SS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             cc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            43  89999999887642  1222245688999998 67777775

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.71  E-value=3.2e-15  Score=128.78  Aligned_cols=246  Identities=9%  Similarity=0.011  Sum_probs=167.6

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEe----------CCCeEEEEeCCCCceeEEecccc------
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS----------EDNTAKVWGLTLGSVVSTFKSHQ------   68 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~------   68 (392)
                      ++.|.++|..+++.+..+.....+  .++++|+++++++++          .++.|.+||..+.+.+.++....      
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~  135 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV  135 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence            679999999999999998765555  499999999888775          36789999999999988875321      


Q ss_pred             -cceEEEEEecCCCEEEEEeC--CCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcc
Q psy17243         69 -STILAVAVLSDSRRVVTSDK--AGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        69 -~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  145 (392)
                       ..-..+.|+|||++++++..  ++.|.++|+.+++.+.++..+-....+....+.+++.+.||.+.+.++.........
T Consensus       136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~  215 (386)
T 3sjl_D          136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT  215 (386)
T ss_dssp             SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred             CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEe
Confidence             23457899999999998874  689999999999998877544322333334566777788888888887642121100


Q ss_pred             e--eeeccccceE-EEEEE-cCCCEEEEeeCCCcEEEEEcCCCe--EEEEEec----------CCCceeEEEEecCCCcE
Q psy17243        146 R--FTVSHSEEIT-CFTVT-WDSQYLITGSRDMSLKVWQVVGGK--LAQVLVG----------HTDHVSCVAVAVTNKSL  209 (392)
Q Consensus       146 ~--~~~~~~~~v~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~----------~~~~v~~~~~~~~~~~~  209 (392)
                      .  .......++. ...|. ++|++++ .+.+|.|++.|+.+..  .+..+.-          .......+++++..+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l  294 (386)
T 3sjl_D          216 HTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI  294 (386)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             ecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeE
Confidence            0  0001112221 23554 5675555 4558999999997653  3333320          12233457778555555


Q ss_pred             EEEecC---------CCeEEEEECCCCceeeeecccccceeEEEEcCCCe-EEEE
Q psy17243        210 VVSGSK---------DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT-VAMS  254 (392)
Q Consensus       210 l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~-~~~~  254 (392)
                      +++...         .+.|.++|+.+++.+..+.. ...+.+|++++|++ .++.
T Consensus       295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~  348 (386)
T 3sjl_D          295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYA  348 (386)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEE
T ss_pred             EEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEE
Confidence            554321         25799999999999988864 34788999999986 4444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.71  E-value=8.4e-15  Score=124.39  Aligned_cols=220  Identities=9%  Similarity=-0.014  Sum_probs=155.4

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccc----ccceEEEEEe
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH----QSTILAVAVL   77 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~   77 (392)
                      +..++.|..|+..++  ...+..+...+.+++++|+++++++...++.|.+||..+++........    ...+..++++
T Consensus        46 ~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d  123 (296)
T 3e5z_A           46 DVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA  123 (296)
T ss_dssp             EGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC
T ss_pred             eCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC
Confidence            456789999999876  5667667788999999999998877777789999999888765443321    2346789999


Q ss_pred             cCCCEEEEE----e-------------CCCeEEEEEcCCceee--eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCC
Q psy17243         78 SDSRRVVTS----D-------------KAGVIAVWVADNAQLL--YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSP  138 (392)
Q Consensus        78 ~~~~~l~~~----~-------------~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  138 (392)
                      |+|+.+++.    .             ..+.|..++.. ++..  .........++++|+++.+++.+.++.|.+|++..
T Consensus       124 ~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~  202 (296)
T 3e5z_A          124 PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA  202 (296)
T ss_dssp             TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS
T ss_pred             CCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC
Confidence            999988873    2             13456666665 3332  22334567899999999997777889999999862


Q ss_pred             CCCC-CcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC
Q psy17243        139 QTHK-DDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       139 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                      .... ........+...+..++++++|+++++.  ++.|.+||.. ++.+..+..+.. +++++|..+++..|+.++.+ 
T Consensus       203 ~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-  277 (296)
T 3e5z_A          203 RGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-  277 (296)
T ss_dssp             SSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-
T ss_pred             CCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-
Confidence            1111 1111112344556789999999866655  7889999986 777777877766 89999964666666666654 


Q ss_pred             eEEEEECCCCce
Q psy17243        218 NLIVWDMETGGE  229 (392)
Q Consensus       218 ~i~iwd~~~~~~  229 (392)
                      .+.-++..+.+.
T Consensus       278 ~l~~~~~~~~~~  289 (296)
T 3e5z_A          278 EFWSIETNVRGL  289 (296)
T ss_dssp             EEEEEECSCCBC
T ss_pred             eEEEEEcccccc
Confidence            566666665544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.71  E-value=5.7e-15  Score=123.64  Aligned_cols=224  Identities=13%  Similarity=0.033  Sum_probs=157.0

Q ss_pred             CeeEEEecCCCCeEE-EEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeec
Q psy17243         28 TVSCVAISPNSIFAV-SGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA  106 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  106 (392)
                      ...++++++++++++ +...++.|.+|+..+.........+...+.++++.++++.+++.. ++.|.+||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            678999999998666 546789999999766543322222335678899999998555555 889999998876543221


Q ss_pred             ---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC
Q psy17243        107 ---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       107 ---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                         ......++++++++.+++...++.|.+|+......   ..........+..++++++++++++...++.|.+||...
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC---EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee---EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence               13567899999999777777788999997643211   111112234578899999998777777788999999887


Q ss_pred             CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .........+...+..++++ +++.++++...++.|.+|+............+...+.+++++++|++.+++.
T Consensus       181 ~~~~~~~~~~~~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  252 (270)
T 1rwi_B          181 NNQVVLPFTDITAPWGIAVD-EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR  252 (270)
T ss_dssp             CCEEECCCSSCCSEEEEEEC-TTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred             CceEeecccCCCCceEEEEC-CCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC
Confidence            66544333333668899999 5667888877889999999876544332223345789999999999888765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.68  E-value=6.2e-15  Score=140.21  Aligned_cols=222  Identities=10%  Similarity=0.002  Sum_probs=152.5

Q ss_pred             cCCcCeeEEEecCCCCeEE-----EEeCCCeEEEEeCCCCcee-EEecccccceEEEEEecCCCEEEEEeCCCe------
Q psy17243         24 GHLNTVSCVAISPNSIFAV-----SGSEDNTAKVWGLTLGSVV-STFKSHQSTILAVAVLSDSRRVVTSDKAGV------   91 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~-----~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~------   91 (392)
                      +|...+..++|||||++||     .|+.+..|++||+++++.+ .... .......++|+||++.|+.++.+..      
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccc
Confidence            3555799999999999988     4445578999999999865 2111 1111267899999999999988776      


Q ss_pred             -------EEEEEcCCce----eeeecc---cceeEEEEeCCCCEEEEecCCC----cEEEEeCCCCCCCCcceeeecccc
Q psy17243         92 -------IAVWVADNAQ----LLYSAL---GPSKCLTVTHNMKYIVSGDGDN----SLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        92 -------i~iwd~~~~~----~~~~~~---~~~~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                             |++|++.+++    ++....   ..+..+.++|+|++|+..+.++    .|.+++....   . ......+..
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~---~-~~~l~~~~~  272 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK---D-FRLLVKGVG  272 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS---S-CEEEEECSS
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC---c-eEEeecCCC
Confidence                   9999998875    333332   2466889999999998887665    6666654322   2 222223444


Q ss_pred             ceEEEEEEcCCCEEEEee---CCCcEEEEEcCCCeE--EEEEecC--CCceeEEEEecCCCcEEEEecCCCeEEEEECC-
Q psy17243        154 EITCFTVTWDSQYLITGS---RDMSLKVWQVVGGKL--AQVLVGH--TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME-  225 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-  225 (392)
                      .+....+ +++.+++...   .++.|.+||+.+++.  ...+..+  ...+..++++  ++.++++...|+..+||.+. 
T Consensus       273 ~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~  349 (695)
T 2bkl_A          273 AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATL  349 (695)
T ss_dssp             CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEET
T ss_pred             ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeC
Confidence            5555555 5666444433   258899999987653  2333333  4457788887  67788888899988887654 


Q ss_pred             CCceeeeeccc-ccceeEEEEcCCCeEEE
Q psy17243        226 TGGEEHFLAGH-LGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       226 ~~~~~~~~~~~-~~~v~~~~~~~dg~~~~  253 (392)
                      +++....+..+ ...+..++++||+..++
T Consensus       350 ~g~~~~~l~~~~~~~v~~~~~s~d~~~l~  378 (695)
T 2bkl_A          350 KGKPVRTVQLPGVGAASNLMGLEDLDDAY  378 (695)
T ss_dssp             TCCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred             CCCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence            45556666554 56778888889887665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.68  E-value=1.6e-14  Score=120.91  Aligned_cols=221  Identities=10%  Similarity=0.010  Sum_probs=154.3

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-ccccceEEEEEecCCC
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSDSR   81 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~   81 (392)
                      +.++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||....... .+. .....+..+++.++++
T Consensus        43 ~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~  120 (270)
T 1rwi_B           43 GMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGA  120 (270)
T ss_dssp             SSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCC
T ss_pred             CCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCC
Confidence            4567888888765543322233445788999999998666655 889999998765433 332 2335689999999998


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEE
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF  158 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~  158 (392)
                      .+++...++.|.+|+..+.......   ......++++++++.+++...++.|.+||......   ..........+..+
T Consensus       121 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i  197 (270)
T 1rwi_B          121 VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ---VVLPFTDITAPWGI  197 (270)
T ss_dssp             EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE---EECCCSSCCSEEEE
T ss_pred             EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce---EeecccCCCCceEE
Confidence            7777777889999987665443221   12567899999999777777788999999864321   11112233668899


Q ss_pred             EEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        159 TVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      ++.+++.++++...++.|.+||............+...+.+++++ ++++++++...++.|+++++...+.
T Consensus       198 ~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          198 AVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEEC-TTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             EECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEEC-CCCCEEEEECCCCEEEEEcCCCccc
Confidence            999999777777778899999987654333222333568899999 5667888888999999999876554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=3.3e-14  Score=135.61  Aligned_cols=221  Identities=9%  Similarity=0.024  Sum_probs=155.1

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCe----------------EEEEeCCCCce----eEEe
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNT----------------AKVWGLTLGSV----VSTF   64 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~----------------v~iwd~~~~~~----~~~~   64 (392)
                      ...|++||+.+++.......+ ..+..++|+|||+.|+.++.++.                |++|++.+++.    +...
T Consensus       150 ~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~  228 (710)
T 2xdw_A          150 WVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF  228 (710)
T ss_dssp             CEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred             eEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc
Confidence            348999999998877643322 33778999999999999887766                99999988762    2233


Q ss_pred             cccccceEEEEEecCCCEEEEEeC-----CCeEEEEEcCC------ce----eeeecccceeEEEEeCCCCEEEEecCC-
Q psy17243         65 KSHQSTILAVAVLSDSRRVVTSDK-----AGVIAVWVADN------AQ----LLYSALGPSKCLTVTHNMKYIVSGDGD-  128 (392)
Q Consensus        65 ~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~------~~----~~~~~~~~~~~~~~~~~~~~l~~~~~d-  128 (392)
                      ..+...+..+.|+|++++|+..+.     +..|++||+.+      +.    .+........ ..++++++.|+..+.. 
T Consensus       229 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~  307 (710)
T 2xdw_A          229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRH  307 (710)
T ss_dssp             TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTT
T ss_pred             CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCC
Confidence            334556889999999999888765     56899999976      42    1222222232 3578888888776553 


Q ss_pred             ---CcEEEEeCCCCCCCCcceeeeccc--cceEEEEEEcCCCEEEEeeCCCc--EEEEEcCCCeEEEEEecCCCceeEEE
Q psy17243        129 ---NSLRIWPTSPQTHKDDERFTVSHS--EEITCFTVTWDSQYLITGSRDMS--LKVWQVVGGKLAQVLVGHTDHVSCVA  201 (392)
Q Consensus       129 ---~~i~~~d~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~  201 (392)
                         ..|.+||+....... ......+.  ..+..++|++++.++++...++.  |.+||+.+++.+..+..+...+..+.
T Consensus       308 ~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~  386 (710)
T 2xdw_A          308 SPNYRLINIDFTDPEESK-WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYS  386 (710)
T ss_dssp             CTTCEEEEEETTSCCGGG-CEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEE
T ss_pred             CCCCEEEEEeCCCCCccc-ceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEe
Confidence               369999987542111 12222333  36788899877778888888874  66678767887788877777888899


Q ss_pred             EecCCCcEEEEec---CCCeEEEEECCCCc
Q psy17243        202 VAVTNKSLVVSGS---KDSNLIVWDMETGG  228 (392)
Q Consensus       202 ~~~~~~~~l~~~~---~dg~i~iwd~~~~~  228 (392)
                      ++|.+..++++.+   ..+.|+.||+.+++
T Consensus       387 ~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          387 GQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             CCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             cCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            9854444554433   35789999998877

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.66  E-value=5e-13  Score=116.67  Aligned_cols=243  Identities=8%  Similarity=-0.037  Sum_probs=165.3

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEe----------CCCeEEEEeCCCCceeEEeccc-------cc
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS----------EDNTAKVWGLTLGSVVSTFKSH-------QS   69 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~-------~~   69 (392)
                      .|.++|..+++.+..+.....+  .++++||+++++.+.          .++.|.+||..+.+.+.++...       ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            8999999999998888755444  999999999998885          3678999999998888776532       12


Q ss_pred             ceEEEEEecCCCEEEEEeC--CCeEEEEEcCCceeeee-cccceeEEEEeCCC-CEEEEecCCCcEEEEeCCCCCCCCcc
Q psy17243         70 TILAVAVLSDSRRVVTSDK--AGVIAVWVADNAQLLYS-ALGPSKCLTVTHNM-KYIVSGDGDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        70 ~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~  145 (392)
                      .-..+.|+|+|++|+++..  ++.|.++| .+++.+.. ...+. ++.+.+++ +.+++.+.||.+.++|. .++.....
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~  202 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG  202 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence            3458999999999998874  57899999 99988877 55433 34555554 45666778999999998 44332111


Q ss_pred             ee--eeccccc-eEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe--EEEEEecC----------CCceeEEEEecCCCcEE
Q psy17243        146 RF--TVSHSEE-ITCFTVTWDSQYLITGSRDMSLKVWQVVGGK--LAQVLVGH----------TDHVSCVAVAVTNKSLV  210 (392)
Q Consensus       146 ~~--~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~----------~~~v~~~~~~~~~~~~l  210 (392)
                      ..  ......+ .....+.+++..++..+..+.+.+.|+....  .+..+.-.          ......++++|..+.++
T Consensus       203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence            10  0011122 1234566666555555578899999987552  22222211          12233467885444444


Q ss_pred             EEec---------CCCeEEEEECCCCceeeeecccccceeEEEEcCCCe-EEEEc
Q psy17243        211 VSGS---------KDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT-VAMSD  255 (392)
Q Consensus       211 ~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~-~~~~~  255 (392)
                      ++..         ..+.|.++|..+++.+..+.. ......++|+|||+ +++..
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEE
Confidence            4332         235899999999999888863 34689999999999 55553

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.66  E-value=2.7e-14  Score=124.16  Aligned_cols=212  Identities=11%  Similarity=0.061  Sum_probs=142.4

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC---------------------------CeEEEEeCCCCc
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED---------------------------NTAKVWGLTLGS   59 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---------------------------g~v~iwd~~~~~   59 (392)
                      .|.+|++.+++...... +.. +..++|+|+++.|+.++.+                           ..|.+||+.+++
T Consensus        86 ~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           86 EIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             eEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence            58888888877655544 334 9999999999988887642                           579999999888


Q ss_pred             eeEEecccccceEEEEEecCCCEEEEEeCCC-------eEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCC----
Q psy17243         60 VVSTFKSHQSTILAVAVLSDSRRVVTSDKAG-------VIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGD----  128 (392)
Q Consensus        60 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----  128 (392)
                      .+..+.. . .+..+.|+|++ .++++..++       ...+|.+.+++....... .....++|++++|+.++.+    
T Consensus       164 ~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~  239 (347)
T 2gop_A          164 VIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAVDSDGERILLYGKPEKKY  239 (347)
T ss_dssp             EEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEEEECSSCEEEEECCSSSC
T ss_pred             EEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeECCCCCEEEEEEccccCC
Confidence            7555554 4 78899999999 777776542       334444334443221111 2223349999988877644    


Q ss_pred             ----CcEEEEeCCCCCCCCcceeeeccccceEE-EEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEe
Q psy17243        129 ----NSLRIWPTSPQTHKDDERFTVSHSEEITC-FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVA  203 (392)
Q Consensus       129 ----~~i~~~d~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  203 (392)
                          ..|.+||  ++.   .......+...+.. +.|+ ++ ++++++.++.+++| +.+++.. .+..+...|.+++|+
T Consensus       240 ~~~~~~l~~~d--~~~---~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s  310 (347)
T 2gop_A          240 MSEHNKLYIYD--GKE---VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVD  310 (347)
T ss_dssp             CCSSCEEEEEC--SSC---EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEES
T ss_pred             ccccceEEEEC--CCc---eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeee
Confidence                3677777  221   12222344567775 8898 88 88899999999999 8766554 444457789999999


Q ss_pred             cCCCcEEEEecCCCeE-EEEECCCCceeeeeccccc
Q psy17243        204 VTNKSLVVSGSKDSNL-IVWDMETGGEEHFLAGHLG  238 (392)
Q Consensus       204 ~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~  238 (392)
                      |   .++++++.++.. .+|.+. ++ ...+..|+.
T Consensus       311 ~---~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~  341 (347)
T 2gop_A          311 E---IVVYLKETATRLRELFTWD-GE-EKQLTDYND  341 (347)
T ss_dssp             S---SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred             C---cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence            5   577777666654 777666 44 444555543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.66  E-value=1.3e-12  Score=110.80  Aligned_cols=241  Identities=7%  Similarity=0.011  Sum_probs=169.6

Q ss_pred             CCeEEEEECCCccceee-eccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCcee-EEecccccceEEEEEecCCCE
Q psy17243          5 DCLVNVWQMNSHELQST-MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV-STFKSHQSTILAVAVLSDSRR   82 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~   82 (392)
                      ++.|.+||.. ++.... +..+...+.++++.+++.++++...++.|..||.+ ++.. ..+......+..+++.++++.
T Consensus        35 ~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l  112 (299)
T 2z2n_A           35 ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDI  112 (299)
T ss_dssp             TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred             CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCE
Confidence            5778899887 543322 22345779999999999877777768899999976 4332 222224557899999999988


Q ss_pred             EEEEeCCCeEEEEEcCCceeee-ec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEE
Q psy17243         83 VVTSDKAGVIAVWVADNAQLLY-SA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF  158 (392)
Q Consensus        83 l~~~~~d~~i~iwd~~~~~~~~-~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~  158 (392)
                      +++...++.|..||. +++... ..   ......+++.++++..++...++.|..||. .+....  .........+..+
T Consensus       113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~~~~~~~~~i  188 (299)
T 2z2n_A          113 WFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE--FKIPTPASGPVGI  188 (299)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE--EECSSTTCCEEEE
T ss_pred             EEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE--eeCCCCCCcceeE
Confidence            887777889999998 444332 21   235678999999988877777889999988 322111  1112234567899


Q ss_pred             EEEcCCCEEEEeeCCCcEEEEEcCCCeEEEE-EecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee-eeccc
Q psy17243        159 TVTWDSQYLITGSRDMSLKVWQVVGGKLAQV-LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH-FLAGH  236 (392)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~  236 (392)
                      ++.++++++++...++.|.+||. +++.... ...+...+.+++++ +++.++++...++.|..||. +++... .+..+
T Consensus       189 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~  265 (299)
T 2z2n_A          189 TKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAG-AGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIK  265 (299)
T ss_dssp             EECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEEET-TTEEEEEECSSS
T ss_pred             EECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEEC-CCCCEEEeccCCceEEEECC-CCceEEEeCCCC
Confidence            99999987777666889999998 6654332 23344678899998 56777777667899999998 454322 23344


Q ss_pred             ccceeEEEEcCCCeEEEEc
Q psy17243        237 LGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       237 ~~~v~~~~~~~dg~~~~~~  255 (392)
                      ...+.++++ ++|.+.+..
T Consensus       266 ~~~~~~i~~-~~g~l~v~~  283 (299)
T 2z2n_A          266 SAEPHGICF-DGETIWFAM  283 (299)
T ss_dssp             SCCEEEEEE-CSSCEEEEE
T ss_pred             CCccceEEe-cCCCEEEEe
Confidence            567899999 999988875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=1e-13  Score=127.19  Aligned_cols=199  Identities=7%  Similarity=0.057  Sum_probs=144.1

Q ss_pred             CCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcC--Cceeeeeccc--cee
Q psy17243         36 PNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD--NAQLLYSALG--PSK  111 (392)
Q Consensus        36 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~--~~~  111 (392)
                      |.+.++++...++.|.++|..+++.+.++.. ...+..+.|+|+++++++++.++.|.+||+.  +.+.+.....  ...
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~  243 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR  243 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence            4455677778899999999999999988874 4456799999999999999999999999995  7776655542  456


Q ss_pred             EEEEe----CCCCEEEEecC-CCcEEEEeCCCCCCCCcceeeec-------c-ccceEEEEEEcCCCE-EEEeeCCCcEE
Q psy17243        112 CLTVT----HNMKYIVSGDG-DNSLRIWPTSPQTHKDDERFTVS-------H-SEEITCFTVTWDSQY-LITGSRDMSLK  177 (392)
Q Consensus       112 ~~~~~----~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~-l~~~~~dg~i~  177 (392)
                      .++++    |+++++++++. ++.+.++|..+.+..........       | ...+..+..++++.. ++....+|.|.
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~  323 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  323 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence            88999    69998888765 58999999875443332221110       1 225778888887554 44555679999


Q ss_pred             EEEcCCCeEEEEE-ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        178 VWQVVGGKLAQVL-VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       178 i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      ++|..+.+.+... .........+.|+|.+..++++...++.|.++|+.+++.+..+..
T Consensus       324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence            9998775432221 123445678899955454556666789999999999988766543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.65  E-value=5.5e-13  Score=114.09  Aligned_cols=223  Identities=10%  Similarity=0.052  Sum_probs=156.6

Q ss_pred             CCcCeeEEEecCCCCeEEE-------EeCCCeEEEEeCCCCceeEEec----ccccceEEEEEecC-CCEEEEEeCCCeE
Q psy17243         25 HLNTVSCVAISPNSIFAVS-------GSEDNTAKVWGLTLGSVVSTFK----SHQSTILAVAVLSD-SRRVVTSDKAGVI   92 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~-------~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~d~~i   92 (392)
                      .-....+++|++++.++++       +..++.|.+||..+++......    ++...+..++++++ ++ |++++..+.|
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l   94 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGL   94 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCE
Confidence            3445689999999987777       5778999999988877643222    24567899999999 65 4445445579


Q ss_pred             EEEEcCCceeeee-cc-------cceeEEEEeCCCCEEEEecCC---------------CcEEEEeCCCCCCCCcceeee
Q psy17243         93 AVWVADNAQLLYS-AL-------GPSKCLTVTHNMKYIVSGDGD---------------NSLRIWPTSPQTHKDDERFTV  149 (392)
Q Consensus        93 ~iwd~~~~~~~~~-~~-------~~~~~~~~~~~~~~l~~~~~d---------------~~i~~~d~~~~~~~~~~~~~~  149 (392)
                      .+||.. ++.... ..       ..+..++++++++.+++...+               +.|..|+.. +    ......
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g----~~~~~~  168 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G----QMIQVD  168 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S----CEEEEE
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C----CEEEec
Confidence            999988 655332 11       236789999999877776654               567777653 1    111122


Q ss_pred             ccccceEEEEEE----cCCCEEEEe-eCCCcEEEEEcC-CCeE-----EEEEecCC-CceeEEEEecCCCcEEEEecCCC
Q psy17243        150 SHSEEITCFTVT----WDSQYLITG-SRDMSLKVWQVV-GGKL-----AQVLVGHT-DHVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       150 ~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~-----~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                      .+......++++    ++++.|+++ ..++.|.+||+. +++.     ...+..+. ..+..++++ +++.++++...++
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~~~~~  247 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSS  247 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTT
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-CCCCEEEEEcCCC
Confidence            233456889999    998766555 467899999986 4542     22233333 567889999 6778888777789


Q ss_pred             eEEEEECCCCceeeeecccccceeEEEEcCCCe-EEEEc
Q psy17243        218 NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT-VAMSD  255 (392)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~-~~~~~  255 (392)
                      .|.+||..+++.+..+..+...+.+++|+++|+ +.++.
T Consensus       248 ~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe
Confidence            999999987887777766667899999999998 44554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.65  E-value=3.6e-13  Score=116.29  Aligned_cols=213  Identities=9%  Similarity=0.004  Sum_probs=146.2

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC----CeEEEEeCCCCceeEEec--ccccceEEEE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED----NTAKVWGLTLGSVVSTFK--SHQSTILAVA   75 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~--~~~~~v~~~~   75 (392)
                      +..++.|.+||.++++.......+...+.+++++|+++++++...+    +.|.+||.++++....+.  .+...+..++
T Consensus        62 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~  141 (333)
T 2dg1_A           62 DVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMV  141 (333)
T ss_dssp             ETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEE
T ss_pred             ECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceE
Confidence            3467889999998877665554567889999999999877777666    689999998876653332  2345789999


Q ss_pred             EecCCCEEEEEeC------CCeEEEEEcCCceeee--ecccceeEEEEeCCCCEEEEe-cCCCcEEEEeCCCCCC-CCcc
Q psy17243         76 VLSDSRRVVTSDK------AGVIAVWVADNAQLLY--SALGPSKCLTVTHNMKYIVSG-DGDNSLRIWPTSPQTH-KDDE  145 (392)
Q Consensus        76 ~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~-~~~~  145 (392)
                      ++|+++.+++...      .+.|..+|..+++...  ........++++|+++.++++ ..++.|.+||+..... ....
T Consensus       142 ~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~  221 (333)
T 2dg1_A          142 FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF  221 (333)
T ss_dssp             ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE
T ss_pred             ECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccc
Confidence            9999987776654      3567777766544322  222356789999999866554 5678999999863211 1110


Q ss_pred             --eee--eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCC------ceeEEEEecCCCcEEEEecC
Q psy17243        146 --RFT--VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTD------HVSCVAVAVTNKSLVVSGSK  215 (392)
Q Consensus       146 --~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~~~  215 (392)
                        ...  ......+..++++++++++++...++.|.+||. +++.+..+..+..      .+.+++|+ +++..|+.++.
T Consensus       222 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~-~dg~~L~v~~~  299 (333)
T 2dg1_A          222 GATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFI-PGTNQLIICSN  299 (333)
T ss_dssp             EEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEEC-TTSCEEEEEEE
T ss_pred             cceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEEC-CCCCEEEEEeC
Confidence              001  111146788999999998887777889999998 5666666654432      68899998 45544444433


Q ss_pred             C
Q psy17243        216 D  216 (392)
Q Consensus       216 d  216 (392)
                      +
T Consensus       300 ~  300 (333)
T 2dg1_A          300 D  300 (333)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.63  E-value=2.2e-12  Score=109.37  Aligned_cols=223  Identities=9%  Similarity=0.034  Sum_probs=153.3

Q ss_pred             CCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee
Q psy17243         25 HLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL  103 (392)
Q Consensus        25 h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  103 (392)
                      +..---+..|+|+ +.++++...++.|..||..+++. ..+. ....+.+++++++++++++ . +..|.+||.++++..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence            3344568899995 55666777789999999988765 3333 4567999999999995544 4 567999999887653


Q ss_pred             e--ecc-----cceeEEEEeCCCCEEEEecCC---------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEE
Q psy17243        104 Y--SAL-----GPSKCLTVTHNMKYIVSGDGD---------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYL  167 (392)
Q Consensus       104 ~--~~~-----~~~~~~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  167 (392)
                      .  ...     .....++++++++++++....         ..-.+|.+....   ............+.++|+|+++.|
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g---~~~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH---HVKKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS---CEEEEEEEESBEEEEEECTTSCEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC---CEEEEeeccccccceEEcCCCCEE
Confidence            2  211     235679999999966654221         223445443221   111222334456889999999876


Q ss_pred             EE-eeCCCcEEEEEc--CCCeEE-----EEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccc
Q psy17243        168 IT-GSRDMSLKVWQV--VGGKLA-----QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGC  239 (392)
Q Consensus       168 ~~-~~~dg~i~i~d~--~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  239 (392)
                      +. .+.++.|.+||+  .++...     ..+..+......++++ +++++.++...++.|..||..+++.+..+..+...
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~  242 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK  242 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-TTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC
Confidence            55 455788999997  455432     2222334567889998 66778777777889999999999999888877778


Q ss_pred             eeEEEEc-CCCeEEEEc
Q psy17243        240 VTCVKLA-GDGTVAMSD  255 (392)
Q Consensus       240 v~~~~~~-~dg~~~~~~  255 (392)
                      +++++|. ||++.|...
T Consensus       243 ~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          243 TTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             EEEEEEESGGGCEEEEE
T ss_pred             ceEEEEeCCCCCEEEEE
Confidence            9999998 787755443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.62  E-value=3.2e-12  Score=108.35  Aligned_cols=226  Identities=9%  Similarity=0.065  Sum_probs=162.6

Q ss_pred             cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEE-ecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee
Q psy17243         24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST-FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL  102 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  102 (392)
                      .+...+.++++.++++++++...++.|.+||.. ++.... ...+...+.++++.+++..+++...++.|..||......
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~   90 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIK   90 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEE
Confidence            355679999999999877776667899999988 554332 223456789999999998888777788999999863322


Q ss_pred             eeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEE
Q psy17243        103 LYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVW  179 (392)
Q Consensus       103 ~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  179 (392)
                      ....   ...+..+++.+++..+++...++.|.+||.. +...  ..........+..+++.++++++++...++.|..|
T Consensus        91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~--~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  167 (299)
T 2z2n_A           91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GKIR--EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRI  167 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE--EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CCEE--EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEE
Confidence            2221   2356789999999888877778899999872 2111  11111234568899999999877777777899999


Q ss_pred             EcCCCeEEEE-EecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeee-ecccccceeEEEEcCCCeEEEEcC
Q psy17243        180 QVVGGKLAQV-LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF-LAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       180 d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      |. +++.... .......+..+++. +++.++++...++.|.+||. +++.... ...+...+.+++++++|++.+...
T Consensus       168 ~~-~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  243 (299)
T 2z2n_A          168 TE-SGDITEFKIPTPASGPVGITKG-NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW  243 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             cC-CCcEEEeeCCCCCCcceeEEEC-CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc
Confidence            98 6655433 23344567889998 56777777777889999999 6664332 333456789999999999877753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.62  E-value=6.5e-14  Score=133.20  Aligned_cols=225  Identities=11%  Similarity=0.039  Sum_probs=149.5

Q ss_pred             CccCCeEEEEECCCccce-eeeccCCcCeeEEEecCCCCeEEEEeCCCe-------------EEEEeCCCCc----eeEE
Q psy17243          2 GGMDCLVNVWQMNSHELQ-STMEGHLNTVSCVAISPNSIFAVSGSEDNT-------------AKVWGLTLGS----VVST   63 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~-------------v~iwd~~~~~----~~~~   63 (392)
                      |+.+..|++||+.+++.+ .... .......++|+|||+.|+.++.|..             |++|++.+++    ++..
T Consensus       143 G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~  221 (695)
T 2bkl_A          143 AADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE  221 (695)
T ss_dssp             TCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC
T ss_pred             CCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe
Confidence            556789999999998865 2111 1111268999999999999988776             9999998876    3334


Q ss_pred             ecccccceEEEEEecCCCEEEEEeCCC----eEEEEEcCCcee--eeecccceeEEEEeCCCCEEEEec---CCCcEEEE
Q psy17243         64 FKSHQSTILAVAVLSDSRRVVTSDKAG----VIAVWVADNAQL--LYSALGPSKCLTVTHNMKYIVSGD---GDNSLRIW  134 (392)
Q Consensus        64 ~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~~  134 (392)
                      ...+...+..+.|+|+|++|+..+.++    .|.+++..+++.  +...........+ +++.+++...   .++.|.+|
T Consensus       222 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~  300 (695)
T 2bkl_A          222 RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEV  300 (695)
T ss_dssp             CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEE
T ss_pred             cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEE
Confidence            444556789999999999998877665    677777655433  2222333444444 5666444433   25789999


Q ss_pred             eCCCCCCCCcceeeecc-ccceEEEEEEcCCCEEEEeeCCCcEEEEEcC-CCeEEEEEecC-CCceeEEEEecCCCcEEE
Q psy17243        135 PTSPQTHKDDERFTVSH-SEEITCFTVTWDSQYLITGSRDMSLKVWQVV-GGKLAQVLVGH-TDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~  211 (392)
                      |+.+............+ ...+..++++ ++.++++...|+..++|.+. +++....+..+ ...+..+.++|.+..+++
T Consensus       301 d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~  379 (695)
T 2bkl_A          301 DPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYY  379 (695)
T ss_dssp             BTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEE
T ss_pred             eCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEE
Confidence            98754321112222222 4567888888 67788888889988887664 45555666544 566778888854434444


Q ss_pred             Eec---CCCeEEEEECCCCce
Q psy17243        212 SGS---KDSNLIVWDMETGGE  229 (392)
Q Consensus       212 ~~~---~dg~i~iwd~~~~~~  229 (392)
                      +.+   ..+.|++||+.+++.
T Consensus       380 ~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          380 VFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEETTEEEEEEEEETTTCCE
T ss_pred             EEcCCCCCCEEEEEECCCCcE
Confidence            333   357899999988764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.62  E-value=2.2e-13  Score=118.75  Aligned_cols=195  Identities=11%  Similarity=0.085  Sum_probs=131.8

Q ss_pred             cCCeEEEEECCCccceeeeccC------CcCeeEEEecCCCCeEEEEeC--CCeEEEEeCCCCceeEE-ecccccceEEE
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGH------LNTVSCVAISPNSIFAVSGSE--DNTAKVWGLTLGSVVST-FKSHQSTILAV   74 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~-~~~~~~~v~~~   74 (392)
                      .++.|.+||..+++.+.++...      ......++++|+|++|+++..  +++|.+||+++++.+.. +... .. ..+
T Consensus        79 ~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~-~~v  156 (361)
T 2oiz_A           79 RSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GC-WSV  156 (361)
T ss_dssp             EEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TE-EEE
T ss_pred             CCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-Cc-cee
Confidence            4678999999999988887632      345778999999999998864  58999999999988877 5421 11 112


Q ss_pred             EEecCC-CEEEEE------------------------------------------------eCCCeEEEEEcCCceee--
Q psy17243         75 AVLSDS-RRVVTS------------------------------------------------DKAGVIAVWVADNAQLL--  103 (392)
Q Consensus        75 ~~~~~~-~~l~~~------------------------------------------------~~d~~i~iwd~~~~~~~--  103 (392)
                      .+.|++ ..+++.                                                +.++.+.++|+......  
T Consensus       157 ~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~  236 (361)
T 2oiz_A          157 IPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVD  236 (361)
T ss_dssp             EECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEE
T ss_pred             EEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceec
Confidence            222222 222233                                                33344555554432211  


Q ss_pred             eec---c----------cceeEEEEeCCCCEEEEecC-----------CCcEEEEeCCCCCCCCcceeeeccccceEEEE
Q psy17243        104 YSA---L----------GPSKCLTVTHNMKYIVSGDG-----------DNSLRIWPTSPQTHKDDERFTVSHSEEITCFT  159 (392)
Q Consensus       104 ~~~---~----------~~~~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~  159 (392)
                      ...   .          .....++++|+++.++++..           .+.|.+||+.+.+   .......+.  +..++
T Consensus       237 ~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~---~v~~i~~~~--p~~ia  311 (361)
T 2oiz_A          237 GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ---RVARIPGRD--ALSMT  311 (361)
T ss_dssp             EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE---EEEEEECTT--CCEEE
T ss_pred             ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc---EEEEEecCC--eeEEE
Confidence            100   0          00113788999888887643           3479999997543   222222333  89999


Q ss_pred             EEcCCCEEEEeeCCCcEEEEEcCCC--eEEEEEecCCCceeEEEEecCC
Q psy17243        160 VTWDSQYLITGSRDMSLKVWQVVGG--KLAQVLVGHTDHVSCVAVAVTN  206 (392)
Q Consensus       160 ~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~  206 (392)
                      |+|++++|++++. +.|.+||..++  +.+..+..+......++++|.+
T Consensus       312 ~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          312 IDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             EETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred             ECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence            9999999999887 99999999999  9998886677778889999543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=5.3e-12  Score=107.06  Aligned_cols=243  Identities=9%  Similarity=0.029  Sum_probs=169.5

Q ss_pred             cCCeEEEEECCCcccee-eeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeE-EecccccceEEEEEecCCC
Q psy17243          4 MDCLVNVWQMNSHELQS-TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS-TFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~   81 (392)
                      .++.|.+||.. ++... .+..+...+.++++.+++.+.++...++.|..||.. ++... .+......+..+++.++++
T Consensus        39 ~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~  116 (300)
T 2qc5_A           39 KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD  116 (300)
T ss_dssp             TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC
T ss_pred             CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCC
Confidence            45778888877 54433 222344678999999999877777667899999987 55432 2222346789999999998


Q ss_pred             EEEEEeCCCeEEEEEcCCceeee-ec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLY-SA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~-~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      .+++...++.|..+|.. ++... ..   ......+++.++++..++...++.|..||.. +...  ..........+..
T Consensus       117 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~--~~~~~~~~~~~~~  192 (300)
T 2qc5_A          117 IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKLE--EYPLPTNAAAPVG  192 (300)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEE--EEECSSTTCCEEE
T ss_pred             EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcEE--EeeCCCCCCCcce
Confidence            88777778899999987 54432 22   2356789999999976666667889999873 2211  1111123456889


Q ss_pred             EEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEE-EecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee-eecc
Q psy17243        158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV-LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH-FLAG  235 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~  235 (392)
                      +++.+++++.++....+.|.+||. +++.... +..+...+.++++. +++.++++...++.|..||. +++... .+..
T Consensus       193 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~  269 (300)
T 2qc5_A          193 ITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG-KNSEIWFTEWGANQIGRITN-DNTIQEYQLQT  269 (300)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECT-TSCEEEEECCS
T ss_pred             EEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC-CCCCEEEeccCCCeEEEECC-CCcEEEEECCc
Confidence            999999987777666778999998 5544332 33345668899998 55677777767799999998 454332 2333


Q ss_pred             cccceeEEEEcCCCeEEEEc
Q psy17243        236 HLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       236 ~~~~v~~~~~~~dg~~~~~~  255 (392)
                      ....+.++++.++|.+.+..
T Consensus       270 ~~~~~~~i~~~~~g~l~v~~  289 (300)
T 2qc5_A          270 ENAEPHGITFGKDGSVWFAL  289 (300)
T ss_dssp             TTCCCCCEEECTTSCEEEEC
T ss_pred             cCCccceeEeCCCCCEEEEc
Confidence            44568899999999987775

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.61  E-value=1.3e-12  Score=115.66  Aligned_cols=226  Identities=12%  Similarity=0.102  Sum_probs=157.0

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCC--eEEEEEcCCceeee
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG--VIAVWVADNAQLLY  104 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~  104 (392)
                      .....|+|+++++++++...++.|++||.++++.......... .. ++|+++++.|+++..++  .|.+++...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4678999999999777777789999999988777655554333 33 99999999999988866  79999887654422


Q ss_pred             e-------cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCccee-eeccccc--eEEEEEEcC-CCEEEEeeCC
Q psy17243        105 S-------ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERF-TVSHSEE--ITCFTVTWD-SQYLITGSRD  173 (392)
Q Consensus       105 ~-------~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~--v~~~~~~~~-~~~l~~~~~d  173 (392)
                      .       ......+++++|++..|+++..++.|+.||............ .......  ...++|+|+ +.++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            2       223567899999666666677789999999874421110000 1111111  138999995 5555555667


Q ss_pred             CcEEEEEcCCCeEEEEEecCC---------------CceeEEEEecCCCcEEEEec-CCCeEEEEECCCCceeeeeccc-
Q psy17243        174 MSLKVWQVVGGKLAQVLVGHT---------------DHVSCVAVAVTNKSLVVSGS-KDSNLIVWDMETGGEEHFLAGH-  236 (392)
Q Consensus       174 g~i~i~d~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-  236 (392)
                      +.|+.|+....  +..+.++.               .....++++ +++.++++-. .++.|+.|++.+++. ..+.++ 
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d-~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~  364 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVD-EDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQV  364 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC-TTCCEEEEETTTTCEEEEEETTTTEE-EEEEECT
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe-CCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCC
Confidence            89999997543  33333332               347789999 5677888887 899999999877764 333333 


Q ss_pred             --------------ccceeEEEEcCCCeEEEEcCCC
Q psy17243        237 --------------LGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       237 --------------~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                                    -.....++++++|.+++++...
T Consensus       365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n  400 (409)
T 3hrp_A          365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG  400 (409)
T ss_dssp             TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred             CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence                          2357899999999999987543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.61  E-value=5.6e-13  Score=127.66  Aligned_cols=223  Identities=13%  Similarity=0.106  Sum_probs=152.3

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCC-----CeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCe--------
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSED-----NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGV--------   91 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------   91 (392)
                      |...+..++|||||++|+.++.+     ..|++||+++++.+.... +...+..++|+|| +.|+.+..++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44468899999999999877544     469999999998765421 2223457899999 99988876654        


Q ss_pred             ------EEEEEcCCce----eeeeccc---ceeEEEEeCCCCEEEEecCCC-----cEEEEeCCCCCCCCcceeeecccc
Q psy17243         92 ------IAVWVADNAQ----LLYSALG---PSKCLTVTHNMKYIVSGDGDN-----SLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        92 ------i~iwd~~~~~----~~~~~~~---~~~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                            |++|++.+++    .+.....   ....+.++|+|++|+....++     .|++||+..+.. ........+..
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~  317 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-GPVTALIPDLK  317 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-CCCEEEECSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-cccEEecCCCC
Confidence                  8999998765    3333322   367889999999988877543     899999864311 10222223333


Q ss_pred             ceEEEEEEcCCCEEEEeeC----CCcEEEEEcCCC--eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECC-C
Q psy17243        154 EITCFTVTWDSQYLITGSR----DMSLKVWQVVGG--KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME-T  226 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~  226 (392)
                      .+... ++|+++.|+..+.    ++.|.+||+.++  +....+..+...+..+.++  ++.++++...|+..+||.+. +
T Consensus       318 ~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~  394 (741)
T 1yr2_A          318 AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLD  394 (741)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETT
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCC
Confidence            44444 3588888887765    345999999874  3444445455556677776  66788888889987777554 4


Q ss_pred             Cceeeeecc-cccceeEEEEcCCCeEEE
Q psy17243        227 GGEEHFLAG-HLGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       227 ~~~~~~~~~-~~~~v~~~~~~~dg~~~~  253 (392)
                      ++....+.. +...+..+.++||+..++
T Consensus       395 g~~~~~l~~~~~~~v~~~~~s~d~~~l~  422 (741)
T 1yr2_A          395 GKPAGAVSLPGIGSASGLSGRPGDRHAY  422 (741)
T ss_dssp             SCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred             CCceeeccCCCCeEEEEeecCCCCCEEE
Confidence            566666654 356788899999887555

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.61  E-value=3.1e-13  Score=118.61  Aligned_cols=224  Identities=9%  Similarity=0.008  Sum_probs=154.7

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEe----------CCCeEEEEeCCCCceeEEeccc-------c
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS----------EDNTAKVWGLTLGSVVSTFKSH-------Q   68 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~-------~   68 (392)
                      +.|.++|..+++.+.++..-..+  .++++||+++|+++.          .++.|.++|..+++.+.++...       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            79999999999999999865556  899999999888876          3678999999999998887532       1


Q ss_pred             cceEEEEEecCCCEEEEEeC--CCeEEEEEcCCceeeeecccce----------eEEEEeCCCCEEEEecC---------
Q psy17243         69 STILAVAVLSDSRRVVTSDK--AGVIAVWVADNAQLLYSALGPS----------KCLTVTHNMKYIVSGDG---------  127 (392)
Q Consensus        69 ~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~---------  127 (392)
                      .....+.++||+++++++..  ++.|.+.|+.+.+.+..+..+-          ..+.++++++++++...         
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~  256 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT  256 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence            23457899999999999874  5789999999998876654321          11334444444333332         


Q ss_pred             ----------------------------CCcEEEEeCCCCCCCCcceeee------c---cccceEEEEEEcCCCEEEEe
Q psy17243        128 ----------------------------DNSLRIWPTSPQTHKDDERFTV------S---HSEEITCFTVTWDSQYLITG  170 (392)
Q Consensus       128 ----------------------------d~~i~~~d~~~~~~~~~~~~~~------~---~~~~v~~~~~~~~~~~l~~~  170 (392)
                                                  .+.+.+.|..............      .   .......++++|+++++++.
T Consensus       257 ~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa  336 (426)
T 3c75_H          257 EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLL  336 (426)
T ss_dssp             CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEE
T ss_pred             eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEE
Confidence                                        2333333332111000000000      0   01111226899998887776


Q ss_pred             eC----------CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCc-EEEEec-CCCeEEEEECCCCceeeee
Q psy17243        171 SR----------DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKS-LVVSGS-KDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       171 ~~----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~  233 (392)
                      ..          .+.|.++|..+.+.+..+... .....++|+| +++ ++++.. .++.|.++|+.+++.+.++
T Consensus       337 ~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          337 VDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            42          357999999999999888632 3578899995 555 666666 6999999999999999887

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.58  E-value=1.2e-12  Score=112.83  Aligned_cols=239  Identities=10%  Similarity=-0.022  Sum_probs=161.8

Q ss_pred             cCCeEEEEECCCccceeeeccCC-------cCeeEEEecCCCCeEEEEeC--CCeEEEEeCCCCceeEEecccccceEEE
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHL-------NTVSCVAISPNSIFAVSGSE--DNTAKVWGLTLGSVVSTFKSHQSTILAV   74 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~   74 (392)
                      .++.|.+||..+++.+..+.-..       ..-..++|+|||++++++..  ++.|.++|+.+++.+.++.... .  ..
T Consensus       107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~--~~  183 (386)
T 3sjl_D          107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C--YH  183 (386)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E--EE
T ss_pred             CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c--ce
Confidence            36789999999999988875321       24567999999999888864  6899999999999999886422 1  22


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCC-ceeeeecc-------cce-eEEEEe-CCCCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         75 AVLSDSRRVVTSDKAGVIAVWVADN-AQLLYSAL-------GPS-KCLTVT-HNMKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        75 ~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~-------~~~-~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      .+....+.+++.+.||.+.+.++.+ ++......       .++ ....|. +++++++ .+.+|.|++.|.........
T Consensus       184 ~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~  262 (386)
T 3sjl_D          184 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFL  262 (386)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEEC
T ss_pred             eecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceee
Confidence            3333445777888888888888876 44422111       111 113443 5665555 55589999999875432211


Q ss_pred             ceee--e-------ccccceEEEEEEcCCCEEEEeeC----------CCcEEEEEcCCCeEEEEEecCCCceeEEEEecC
Q psy17243        145 ERFT--V-------SHSEEITCFTVTWDSQYLITGSR----------DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT  205 (392)
Q Consensus       145 ~~~~--~-------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  205 (392)
                      ....  .       -.......++++++++.++....          ...|.++|+.+++.+..+.. ...+..++++++
T Consensus       263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D  341 (386)
T 3sjl_D          263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQD  341 (386)
T ss_dssp             CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSS
T ss_pred             cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCC
Confidence            1111  0       01223345778999998888653          25799999999999988763 347789999955


Q ss_pred             CCcEEEE-ecCCCeEEEEECCCCceeeeecccccceeEEEEcCC
Q psy17243        206 NKSLVVS-GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGD  248 (392)
Q Consensus       206 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~d  248 (392)
                      +..+|++ ...++.|.++|..+++.+.++... +.-+.|.+++|
T Consensus       342 ~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          342 EKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             SSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             CCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            5435555 456899999999999999888643 33345555555

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=1.6e-12  Score=111.18  Aligned_cols=221  Identities=10%  Similarity=0.062  Sum_probs=152.3

Q ss_pred             CccCCeEEEEECCCccceeeec----cCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCceeEE-ecc----cccce
Q psy17243          2 GGMDCLVNVWQMNSHELQSTME----GHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVST-FKS----HQSTI   71 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~----~~~~v   71 (392)
                      +..++.|.+||..+++......    ++...+.+++++++ ++++++. ..+.|.+||.+ ++.... ...    ....+
T Consensus        42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  119 (314)
T 1pjx_A           42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGC  119 (314)
T ss_dssp             TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCC
T ss_pred             CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCC
Confidence            3567889999988776543222    25567899999999 7655544 44579999988 665433 221    12358


Q ss_pred             EEEEEecCCCEEEEEeCC---------------CeEEEEEcCCceeee--ecccceeEEEEe----CCCCEEEEe-cCCC
Q psy17243         72 LAVAVLSDSRRVVTSDKA---------------GVIAVWVADNAQLLY--SALGPSKCLTVT----HNMKYIVSG-DGDN  129 (392)
Q Consensus        72 ~~~~~~~~~~~l~~~~~d---------------~~i~iwd~~~~~~~~--~~~~~~~~~~~~----~~~~~l~~~-~~d~  129 (392)
                      .++++.++++.+++...+               +.|..++.. ++...  ........++++    ++++.++++ ..++
T Consensus       120 ~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~  198 (314)
T 1pjx_A          120 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTK  198 (314)
T ss_dssp             CEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred             cCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCC
Confidence            899999999887776654               567777766 44322  222345788999    999766555 5678


Q ss_pred             cEEEEeCCC-CCCCC--cceeeeccc-cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecC
Q psy17243        130 SLRIWPTSP-QTHKD--DERFTVSHS-EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT  205 (392)
Q Consensus       130 ~i~~~d~~~-~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  205 (392)
                      .|.+||... +....  .......+. ..+..++++++++++++...++.|.+||..+++.+..+..+...+.+++++ +
T Consensus       199 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~-~  277 (314)
T 1pjx_A          199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK-P  277 (314)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC-T
T ss_pred             eEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEEC-C
Confidence            999999752 11100  111111222 557889999999888887778899999998777777777666789999998 5


Q ss_pred             CCc-EEEEecCCCeEEEEECCC
Q psy17243        206 NKS-LVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       206 ~~~-~l~~~~~dg~i~iwd~~~  226 (392)
                      ++. ++++...++.|..|++..
T Consensus       278 dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          278 QTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEeCCCCeEEEEeCCC
Confidence            566 666666778999999875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.57  E-value=1.3e-12  Score=113.11  Aligned_cols=172  Identities=9%  Similarity=-0.018  Sum_probs=132.8

Q ss_pred             ceEEEEEecCCCEEEEEeCCCeEEEEEcCCce-------------eeeecccceeEEEEeCCCCEEEEecCCCcEEEEeC
Q psy17243         70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ-------------LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPT  136 (392)
Q Consensus        70 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~  136 (392)
                      +++.+++++....+++|+.++ +.+|+++..+             ....+.. +..++|  ++++|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            689999999999999999885 5569865443             2334555 889999  89999999 8899999999


Q ss_pred             CCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCC
Q psy17243        137 SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKD  216 (392)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  216 (392)
                      .+...   ......+...+.++.+.+.  .++++..||.|.+||+.+++...    +...|++++|+ +++  ++.|..|
T Consensus       114 ~sl~~---~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WS-pkG--~~vg~~d  181 (388)
T 1xip_A          114 EELSE---FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVT-NSQ--LAVLLKD  181 (388)
T ss_dssp             SSTTC---EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEEC-SSE--EEEEETT
T ss_pred             hhhhc---cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEc-CCc--eEEEEcC
Confidence            85442   2233355667887776644  38888999999999999887643    44689999999 455  5678889


Q ss_pred             CeEEEEECCCCce--eeee------c---ccccceeEEEEcCCCeEEEEcCCC
Q psy17243        217 SNLIVWDMETGGE--EHFL------A---GHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       217 g~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      |++++|+...++.  ...+      .   +|...|.++.|.+++.++++-...
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~  234 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNV  234 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECC
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCC
Confidence            9999999887664  4455      2   367889999999999999875543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=2.3e-11  Score=106.14  Aligned_cols=223  Identities=11%  Similarity=-0.054  Sum_probs=153.9

Q ss_pred             cCCeEEEEECCCccceeeeccC-------CcCeeEEEecCCCCeEEEEeC--CCeEEEEeCCCCceeEE-ecccccceEE
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGH-------LNTVSCVAISPNSIFAVSGSE--DNTAKVWGLTLGSVVST-FKSHQSTILA   73 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~-~~~~~~~v~~   73 (392)
                      .++.|.+||..+.+.+..+.-.       ...-..+.|+|+|++|+++..  ++.|.++| .+++.+.. +.. ...   
T Consensus        95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~~---  169 (373)
T 2mad_H           95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PTC---  169 (373)
T ss_pred             CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cce---
Confidence            4678999999998888776432       123458999999999998874  57899999 99998888 653 222   


Q ss_pred             EEEecCC-CEEEEEeCCCeEEEEEcCCceeeeecc------c--ce-eEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCC
Q psy17243         74 VAVLSDS-RRVVTSDKAGVIAVWVADNAQLLYSAL------G--PS-KCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKD  143 (392)
Q Consensus        74 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~------~--~~-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  143 (392)
                      +.+.|++ ..+++.+.||.+.++|. +++......      .  ++ ....+.+++..++..+..+.+.+.|+.......
T Consensus       170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v  248 (373)
T 2mad_H          170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN  248 (373)
T ss_pred             EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE
Confidence            4455555 45667778999999999 776653211      1  11 123455665555555577899999986432211


Q ss_pred             cceeee---------ccccceEEEEEEcCCCEEEEeeC----------CCcEEEEEcCCCeEEEEEecCCCceeEEEEec
Q psy17243        144 DERFTV---------SHSEEITCFTVTWDSQYLITGSR----------DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAV  204 (392)
Q Consensus       144 ~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  204 (392)
                      ......         ........+.++|+++.+++...          .+.|.++|+.+++.+..+.. ......++|+|
T Consensus       249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~  327 (373)
T 2mad_H          249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQ  327 (373)
T ss_pred             eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECC
Confidence            111100         01233445789999998888653          35799999999999888863 34678999995


Q ss_pred             CCCcEEEEec-CCCeEEEEECCCCceeeee
Q psy17243        205 TNKSLVVSGS-KDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       205 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~  233 (392)
                      ++..+++++. .++.|.++|+.+++.+..+
T Consensus       328 Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          328 DGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            4442677766 5899999999999998874

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.55  E-value=3.1e-13  Score=116.75  Aligned_cols=234  Identities=8%  Similarity=-0.053  Sum_probs=153.9

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEe----------CCCeEEEEeCCCCceeEEeccc-------cc
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS----------EDNTAKVWGLTLGSVVSTFKSH-------QS   69 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~-------~~   69 (392)
                      .|.++|..+++.+.++.....+  .+.++|++++++++.          .++.|.+||+.+++.+.++...       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8999999999999999766666  799999999988886          3688999999999999998643       12


Q ss_pred             ceEEEEEecCCCEEEEEeC--CCeEEE--EEcCCceeeeecccc--------eeEEEE----------------------
Q psy17243         70 TILAVAVLSDSRRVVTSDK--AGVIAV--WVADNAQLLYSALGP--------SKCLTV----------------------  115 (392)
Q Consensus        70 ~v~~~~~~~~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~--------~~~~~~----------------------  115 (392)
                      ....++++|||++++++..  +..+.+  +|+.+-..+.. .+.        ..-+..                      
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v-~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~  203 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS-ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC-SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEEC-CCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence            3568999999999998875  467888  88865111100 000        000111                      


Q ss_pred             ---------------eCCCCEEEEecCCCcEEEEeCCCCCCCCcceeee------c---cccceEEEEEEcCCCEEEEee
Q psy17243        116 ---------------THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV------S---HSEEITCFTVTWDSQYLITGS  171 (392)
Q Consensus       116 ---------------~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~---~~~~v~~~~~~~~~~~l~~~~  171 (392)
                                     .+++..++..+. +.+.+.|..............      .   .......++++|++++++++.
T Consensus       204 ~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~  282 (368)
T 1mda_H          204 AQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             EEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence                           222233333333 555555554211100000000      0   011112267999999888764


Q ss_pred             C---------CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEec-CCCeEEEEECCCCceeeeeccccccee
Q psy17243        172 R---------DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS-KDSNLIVWDMETGGEEHFLAGHLGCVT  241 (392)
Q Consensus       172 ~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~  241 (392)
                      .         ++.+.++|+.+.+.+..+.... ....++|+|.+..++++.. .++.|.++|+.+++.+..++.... ..
T Consensus       283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~  360 (368)
T 1mda_H          283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PE  360 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CC
T ss_pred             ccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CC
Confidence            3         2356799999999888876433 6789999955555777777 699999999999999988875433 33


Q ss_pred             EEEEc
Q psy17243        242 CVKLA  246 (392)
Q Consensus       242 ~~~~~  246 (392)
                      .+++.
T Consensus       361 ~i~~~  365 (368)
T 1mda_H          361 SLSVQ  365 (368)
T ss_dssp             EEECC
T ss_pred             EEEee
Confidence            44443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.53  E-value=1.9e-11  Score=103.62  Aligned_cols=208  Identities=10%  Similarity=0.032  Sum_probs=138.9

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc----cccceEEEEEecC
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS----HQSTILAVAVLSD   79 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~   79 (392)
                      .++.|..||..+++. ..+. ....+.+++++++++++++ . ++.|.+||.++++.......    ....+..+++.|+
T Consensus        33 ~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d  108 (297)
T 3g4e_A           33 PAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA  108 (297)
T ss_dssp             TTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT
T ss_pred             CCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC
Confidence            467888888877654 3333 4577999999999995554 3 56799999988765433221    1245789999999


Q ss_pred             CCEEEEEeCC---------CeEEEEEcCC-cee--eeecccceeEEEEeCCCCEEEE-ecCCCcEEEEeCC--CCCCCCc
Q psy17243         80 SRRVVTSDKA---------GVIAVWVADN-AQL--LYSALGPSKCLTVTHNMKYIVS-GDGDNSLRIWPTS--PQTHKDD  144 (392)
Q Consensus        80 ~~~l~~~~~d---------~~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~~~d~~--~~~~~~~  144 (392)
                      |+++++....         ..-.+|.+.. ++.  +.......+.++++|+++.+++ .+.++.|.+|++.  .+.....
T Consensus       109 G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~  188 (297)
T 3g4e_A          109 GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR  188 (297)
T ss_dssp             SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE
T ss_pred             CCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc
Confidence            9966654321         2234444432 222  2222234578999999987755 4557899999874  2221111


Q ss_pred             cee--eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEe-cCCCcEEEEecC
Q psy17243        145 ERF--TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVA-VTNKSLVVSGSK  215 (392)
Q Consensus       145 ~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~  215 (392)
                      ...  ..........+++.++|++.++....+.|..||..+++.+..+..+...+++++|. |..+.++++...
T Consensus       189 ~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          189 RSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             EEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            111  11233567889999999877777778889999999899988888777789999998 444555555543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.52  E-value=7.2e-11  Score=101.41  Aligned_cols=214  Identities=10%  Similarity=-0.041  Sum_probs=146.1

Q ss_pred             eeEEEecCC-CCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee--
Q psy17243         29 VSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS--  105 (392)
Q Consensus        29 v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--  105 (392)
                      ..+..|+|+ +.++++...++.|..||.++++.. .+. ....+.++++.++++++++. .+ .|.+||..+++....  
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            467899997 456667767899999999877643 333 35679999999999876654 44 499999988765322  


Q ss_pred             cc-----cceeEEEEeCCCCEEEEecC------CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEe-eCC
Q psy17243        106 AL-----GPSKCLTVTHNMKYIVSGDG------DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITG-SRD  173 (392)
Q Consensus       106 ~~-----~~~~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d  173 (392)
                      ..     ..+..+.++++++++++...      .+.|..++ . +.    .............++|+|+++.|+.+ ..+
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~-g~----~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K-GK----VTKLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T-TE----EEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C-Cc----EEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            11     24678999999986665432      24555555 2 11    11111233456789999999877655 456


Q ss_pred             CcEEEEEcC--CC-eE-----EEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEE
Q psy17243        174 MSLKVWQVV--GG-KL-----AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKL  245 (392)
Q Consensus       174 g~i~i~d~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  245 (392)
                      +.|.+||+.  ++ +.     ...+.........+++. +++.+.++...++.|.+||. +++.+..+..+...+.+++|
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d-~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af  278 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF  278 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC-CCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEE
Confidence            899999986  55 31     22222234556788888 66777776666789999998 57777777766678999999


Q ss_pred             c-CCCeEEEE
Q psy17243        246 A-GDGTVAMS  254 (392)
Q Consensus       246 ~-~dg~~~~~  254 (392)
                      + +|+..+..
T Consensus       279 ~g~d~~~L~v  288 (326)
T 2ghs_A          279 IGPDASRLLV  288 (326)
T ss_dssp             ESTTSCEEEE
T ss_pred             ecCCCCEEEE
Confidence            8 88765543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.52  E-value=1.2e-10  Score=98.70  Aligned_cols=224  Identities=10%  Similarity=0.040  Sum_probs=160.4

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeE-EecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS-TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL  103 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  103 (392)
                      ....+.++++.+++++.++...++.|.+||.. ++... .+......+..+++.++++.+++...++.|..+|.. ++..
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~   95 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT   95 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence            45678899999999877777678999999987 55443 222334678999999999877777778899999988 5443


Q ss_pred             -eec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEE
Q psy17243        104 -YSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVW  179 (392)
Q Consensus       104 -~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  179 (392)
                       ...   ......+++.++++++++...++.|..+|.. +... . .........+..+++.+++++.++...++.|..|
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-E-YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-E-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-E-ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence             222   2356788999999888877778899999875 2111 1 1111234568899999999866666667889999


Q ss_pred             EcCCCeEEEE-EecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeee-ecccccceeEEEEcCCCeEEEEcC
Q psy17243        180 QVVGGKLAQV-LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF-LAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       180 d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      |. +++.... ...+...+..+++. +++.++++....+.|.+||. +++.... +..+...+.++++.++|++.++..
T Consensus       173 ~~-~g~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  248 (300)
T 2qc5_A          173 TN-TGKLEEYPLPTNAAAPVGITSG-NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW  248 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             CC-CCcEEEeeCCCCCCCcceEEEC-CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence            98 5554432 22334568899998 56777777777788999998 4554332 333456788999999999877764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.51  E-value=6.3e-13  Score=115.06  Aligned_cols=168  Identities=17%  Similarity=0.129  Sum_probs=127.3

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc-----------eeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS-----------VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      .+++.+++++...++++|+.++ +.+|++++.+           ..... .+.. |+.++|  +++.|+++ .++.|++|
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence            3689999999999999999875 6669865433           11222 3556 999999  88999998 88999999


Q ss_pred             EcCCce---eeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243         96 VADNAQ---LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus        96 d~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      |+.+..   ....+..++..+.+.+.  .+++++.||.|.+||+......       .+...|+|++|+|+|  ++.|..
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-------~~~~~Vs~v~WSpkG--~~vg~~  180 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-------QLAQNVTSFDVTNSQ--LAVLLK  180 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-------EEEESEEEEEECSSE--EEEEET
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-------cccCCceEEEEcCCc--eEEEEc
Confidence            987553   33445556666655543  3888999999999999744321       144689999999999  678899


Q ss_pred             CCcEEEEEcCCCeE--EEEE------e---cCCCceeEEEEecCCCcEEEE
Q psy17243        173 DMSLKVWQVVGGKL--AQVL------V---GHTDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       173 dg~i~i~d~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~l~~  212 (392)
                      ||.+++|+....+.  ...+      .   +|...|.++.|. +++.++++
T Consensus       181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl-~~~~flv~  230 (388)
T 1xip_A          181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL-SPQDFLAV  230 (388)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES-SSSEEEEE
T ss_pred             CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe-cCCeEEEE
Confidence            99999999988775  5555      2   367889999999 66777665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.50  E-value=6.7e-12  Score=120.22  Aligned_cols=219  Identities=15%  Similarity=0.031  Sum_probs=145.5

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCe--------------EEEEeCCCCce----eEEeccc
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNT--------------AKVWGLTLGSV----VSTFKSH   67 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~--------------v~iwd~~~~~~----~~~~~~~   67 (392)
                      ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.              |++|++.+++.    +.....+
T Consensus       189 ~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~  266 (741)
T 1yr2_A          189 RTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL  266 (741)
T ss_dssp             EEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred             EEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence            5799999999887653 223333468999999 98888876654              89999987752    2222333


Q ss_pred             ccceEEEEEecCCCEEEEEeCCC-----eEEEEEcCCc--e-e--eeecccceeEEEEeCCCCEEEEecC----CCcEEE
Q psy17243         68 QSTILAVAVLSDSRRVVTSDKAG-----VIAVWVADNA--Q-L--LYSALGPSKCLTVTHNMKYIVSGDG----DNSLRI  133 (392)
Q Consensus        68 ~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~--~-~--~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~~  133 (392)
                      ...+..+.|+|||++|+..+.++     .|++||+.++  + .  +.......... ++|+++.|+..+.    ++.|.+
T Consensus       267 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~  345 (741)
T 1yr2_A          267 PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVR  345 (741)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEE
T ss_pred             CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEE
Confidence            34588999999999988877543     8999999876  3 2  22222223333 3588888887765    345999


Q ss_pred             EeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcC-CCeEEEEEec-CCCceeEEEEecCCCcEEE
Q psy17243        134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV-GGKLAQVLVG-HTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~  211 (392)
                      ||+.... .........+...+..+.+. ++.++++...++..+||.+. +++....+.. +...+..+.++|.+..+++
T Consensus       346 ~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~  423 (741)
T 1yr2_A          346 VDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYL  423 (741)
T ss_dssp             EECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEE
T ss_pred             EeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEE
Confidence            9987532 11222333344456677777 56677888888887777554 4555566654 3567888889865544554


Q ss_pred             Eec---CCCeEEEEECCCCce
Q psy17243        212 SGS---KDSNLIVWDMETGGE  229 (392)
Q Consensus       212 ~~~---~dg~i~iwd~~~~~~  229 (392)
                      +.+   ..+.|++||+.+++.
T Consensus       424 ~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          424 SFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEETTEEEEEEEEETTTTEE
T ss_pred             EEcCCCCCCEEEEEECCCCcE
Confidence            433   357899999988763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.49  E-value=5.5e-11  Score=101.20  Aligned_cols=225  Identities=14%  Similarity=0.037  Sum_probs=151.9

Q ss_pred             ceeeeccCCcCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      .+..+..+........|+|+++ ++++...++.|..|+. +++ ...+..+...+..+++.++++.+++...++.|..|+
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence            3444555566678899999988 6677778899999997 454 345555667789999999999766666668899999


Q ss_pred             cCCceeeee---cc----cceeEEEEeCCCCEEEE----ecC-------------CCcEEEEeCCCCCCCCcceeeeccc
Q psy17243         97 ADNAQLLYS---AL----GPSKCLTVTHNMKYIVS----GDG-------------DNSLRIWPTSPQTHKDDERFTVSHS  152 (392)
Q Consensus        97 ~~~~~~~~~---~~----~~~~~~~~~~~~~~l~~----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~~  152 (392)
                      .+ ++....   ..    .....+++.++|+..++    |..             .+.|..||..++...   .. . ..
T Consensus       114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~---~~-~-~~  187 (305)
T 3dr2_A          114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ---RM-A-DL  187 (305)
T ss_dssp             TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE---EE-E-EE
T ss_pred             CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE---EE-e-cC
Confidence            86 443211   11    13457999999998776    432             256777776433221   11 1 33


Q ss_pred             cceEEEEEEcCCCEEEEeeCC------CcEEEEEcCCCeEE--EEE-ecCCCceeEEEEecCCCcEEEEecCCCeEEEEE
Q psy17243        153 EEITCFTVTWDSQYLITGSRD------MSLKVWQVVGGKLA--QVL-VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD  223 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  223 (392)
                      .....++|+|+++.|+.+...      +.|.+|++......  ..+ .........+++. +++++.+ +..+ .|.+|+
T Consensus       188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d-~~G~lwv-~~~~-gv~~~~  264 (305)
T 3dr2_A          188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD-RGGWLWS-SSGT-GVCVFD  264 (305)
T ss_dssp             SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC-TTSCEEE-CCSS-EEEEEC
T ss_pred             CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC-CCCCEEE-ecCC-cEEEEC
Confidence            456789999999988877665      68999998765411  111 1123445678888 5666544 4444 599999


Q ss_pred             CCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        224 METGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       224 ~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      . +++.+..+..+. .+.+++|+++++.+...
T Consensus       265 ~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it  294 (305)
T 3dr2_A          265 S-DGQLLGHIPTPG-TASNCTFDQAQQRLFIT  294 (305)
T ss_dssp             T-TSCEEEEEECSS-CCCEEEECTTSCEEEEE
T ss_pred             C-CCCEEEEEECCC-ceeEEEEeCCCCEEEEE
Confidence            8 577777776554 58899999988765543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.48  E-value=4.8e-11  Score=105.62  Aligned_cols=212  Identities=11%  Similarity=0.103  Sum_probs=148.7

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCC--eEEEEeCCCCceeEEe----cccccceEEEEEe
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDN--TAKVWGLTLGSVVSTF----KSHQSTILAVAVL   77 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~----~~~~~~v~~~~~~   77 (392)
                      .++.|++||.++++........ .... ++|+|+++.|+++..++  .|.+++...+.....+    ......+.+++++
T Consensus       150 ~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~  227 (409)
T 3hrp_A          150 DDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALD  227 (409)
T ss_dssp             TTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEEC
T ss_pred             CCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEe
Confidence            4578999999877766555443 2334 99999999888888766  7999998766554444    2244567889999


Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCceeeee----cc---cce--eEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCCCccee
Q psy17243         78 SDSRRVVTSDKAGVIAVWVADNAQLLYS----AL---GPS--KCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHKDDERF  147 (392)
Q Consensus        78 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~---~~~--~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  147 (392)
                      |++..|+++..++.|+.||..++.....    ..   ...  ..++++|+ +.++++-..++.|+.|+....     ...
T Consensus       228 p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----~~~  302 (409)
T 3hrp_A          228 ETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----CEW  302 (409)
T ss_dssp             TTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----EEE
T ss_pred             CCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----EEE
Confidence            9656666678889999999987754322    11   111  28999995 555555566889999987532     111


Q ss_pred             eecc---------------ccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEecC---------------CCc
Q psy17243        148 TVSH---------------SEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVGH---------------TDH  196 (392)
Q Consensus       148 ~~~~---------------~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~---------------~~~  196 (392)
                      ..++               -.....++++++++++++-. .++.|+.|++.+++. ..+.++               -..
T Consensus       303 ~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~  381 (409)
T 3hrp_A          303 FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNY  381 (409)
T ss_dssp             EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSS
T ss_pred             EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCC
Confidence            1111               23478999999999777777 789999999877764 334333               235


Q ss_pred             eeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        197 VSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       197 v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      ...++++ +++.++++-..++.|+.+++
T Consensus       382 P~giavd-~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          382 PYDICYD-GEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEEC-SSSEEEEEESTTCEEEEEEE
T ss_pred             ceEEEEc-CCCCEEEEECCCCeEEEEEe
Confidence            7789999 45888888888888888765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.46  E-value=1.8e-11  Score=115.53  Aligned_cols=250  Identities=13%  Similarity=0.113  Sum_probs=165.9

Q ss_pred             CccCCeEEEEECCCccceeeeccC--CcCeeEEEecC---CCCeEEEEe------CCCeEEEEeCCCCceeEEecccc--
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGH--LNTVSCVAISP---NSIFAVSGS------EDNTAKVWGLTLGSVVSTFKSHQ--   68 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~---~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~--   68 (392)
                      ++.|+.|..+|.++|+.+..+...  ......+..+|   ++. ++.++      .+|.|..||.++|+.+-.+....  
T Consensus       127 ~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~  205 (689)
T 1yiq_A          127 GVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGD  205 (689)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred             EccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCC
Confidence            567899999999999998777542  11111222223   444 44443      37899999999999887664210  


Q ss_pred             -----------------------------cceEEEEEecCCCEEEEEeCCCe-------------------EEEEEcCCc
Q psy17243         69 -----------------------------STILAVAVLSDSRRVVTSDKAGV-------------------IAVWVADNA  100 (392)
Q Consensus        69 -----------------------------~~v~~~~~~~~~~~l~~~~~d~~-------------------i~iwd~~~~  100 (392)
                                                   .....+++.|+...++.+..++.                   |..+|.+++
T Consensus       206 p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG  285 (689)
T 1yiq_A          206 PKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG  285 (689)
T ss_dssp             TTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC
T ss_pred             cccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC
Confidence                                         01125788898889999888764                   999999999


Q ss_pred             eeeeecccc------------eeEEEEeCCCC---EEEEecCCCcEEEEeCCCCCCCCcceeee----------------
Q psy17243        101 QLLYSALGP------------SKCLTVTHNMK---YIVSGDGDNSLRIWPTSPQTHKDDERFTV----------------  149 (392)
Q Consensus       101 ~~~~~~~~~------------~~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------------  149 (392)
                      +.+..+...            ........+++   .++.++.+|.++++|..+++......+..                
T Consensus       286 ~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~  365 (689)
T 1yiq_A          286 EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPIL  365 (689)
T ss_dssp             CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEE
T ss_pred             ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCccc
Confidence            987654321            11112223554   78899999999999998765431110000                


Q ss_pred             ---------ccc-----------cceEEEEEEcCCCEEEEeeC-------------------------------------
Q psy17243        150 ---------SHS-----------EEITCFTVTWDSQYLITGSR-------------------------------------  172 (392)
Q Consensus       150 ---------~~~-----------~~v~~~~~~~~~~~l~~~~~-------------------------------------  172 (392)
                               ...           ..-..++++|+..++++...                                     
T Consensus       366 ~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~  445 (689)
T 1yiq_A          366 DEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEG  445 (689)
T ss_dssp             CHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHH
T ss_pred             chhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCccccc
Confidence                     000           00123688888888777532                                     


Q ss_pred             --------CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccc-ceeEE
Q psy17243        173 --------DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG-CVTCV  243 (392)
Q Consensus       173 --------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~  243 (392)
                              +|.|..||+.+++.+..+..+. +...-.+. ..+.+++.++.||.|+.||.++|+.+.+++...+ ...-+
T Consensus       446 ~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~-tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~  523 (689)
T 1yiq_A          446 LLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLS-TAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPV  523 (689)
T ss_dssp             HHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred             CCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccce-ECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCce
Confidence                    3779999999999988876543 33333444 3566888899999999999999999988875433 23456


Q ss_pred             EEcCCCeEEEE
Q psy17243        244 KLAGDGTVAMS  254 (392)
Q Consensus       244 ~~~~dg~~~~~  254 (392)
                      .|..||+..+.
T Consensus       524 ty~~~G~qyv~  534 (689)
T 1yiq_A          524 TYSVDGEQYVT  534 (689)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCEEEEE
Confidence            77788885544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=3.2e-11  Score=104.40  Aligned_cols=228  Identities=11%  Similarity=0.075  Sum_probs=148.0

Q ss_pred             cCeeEEEecCCCCeEEEEe--CCCeEEEEeCCCCceeEEec-------ccccceEEEEEecCCCEEEEEeC-----CCeE
Q psy17243         27 NTVSCVAISPNSIFAVSGS--EDNTAKVWGLTLGSVVSTFK-------SHQSTILAVAVLSDSRRVVTSDK-----AGVI   92 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~-----d~~i   92 (392)
                      .....++++|+|+++++..  .++.++||.+.+++.. .+.       .+-..+..+++.++++.+++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999888864  2343556655555432 221       23467899999999875555433     5789


Q ss_pred             EEEEcCCceeeeeccc---------ceeEEEEeCCCCEEEEe-c---CCCcEEEEeCCCCCCCCcc-----------eee
Q psy17243         93 AVWVADNAQLLYSALG---------PSKCLTVTHNMKYIVSG-D---GDNSLRIWPTSPQTHKDDE-----------RFT  148 (392)
Q Consensus        93 ~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~-~---~d~~i~~~d~~~~~~~~~~-----------~~~  148 (392)
                      .+||+.+++.+..+..         ....+++++++..++++ .   .++.|.+||+.++......           ...
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            9999998886554321         24688999865555444 3   5789999998744321100           000


Q ss_pred             e-c--------------cccceEEEEEEcCCCEEEEeeCCC-cEEEEEcC---CCe-----EE--EEEecCCCceeEEEE
Q psy17243        149 V-S--------------HSEEITCFTVTWDSQYLITGSRDM-SLKVWQVV---GGK-----LA--QVLVGHTDHVSCVAV  202 (392)
Q Consensus       149 ~-~--------------~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~---~~~-----~~--~~~~~~~~~v~~~~~  202 (392)
                      . +              ....+..++|+|+++.|+.+...+ .+..++..   .+.     ..  ....++......+++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence            0 0              012368899999999888887765 55555432   110     00  011233445667899


Q ss_pred             ecCCCcEEEEecCCCeEEEEECCCCceeeeecc-cccceeEEEEcCCCeEEEEcC
Q psy17243        203 AVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG-HLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       203 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      + +++.++++...++.|.+||..+++....... +.....+++|.++|++.++..
T Consensus       256 d-~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          256 D-KDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             C-TTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             C-CCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            9 5688889888899999999855654333322 245688999999999888865

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.44  E-value=1.9e-11  Score=115.12  Aligned_cols=250  Identities=12%  Similarity=0.070  Sum_probs=167.3

Q ss_pred             CccCCeEEEEECCCccceeeeccC-C----cCeeEEEecCCCCeEEEEeC------CCeEEEEeCCCCceeEEeccccc-
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGH-L----NTVSCVAISPNSIFAVSGSE------DNTAKVWGLTLGSVVSTFKSHQS-   69 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h-~----~~v~~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~-   69 (392)
                      ++.|+.|..+|..+++.+..+..+ .    ..+.+--...++ .++.++.      +|.|..+|.++|+.+-++..... 
T Consensus       134 ~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~  212 (677)
T 1kb0_A          134 GAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGD  212 (677)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred             EcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCC
Confidence            467899999999999999887654 1    112111111133 4555543      69999999999998876653211 


Q ss_pred             -------------------------------ceEEEEEecCCCEEEEEeCCC-------------------eEEEEEcCC
Q psy17243         70 -------------------------------TILAVAVLSDSRRVVTSDKAG-------------------VIAVWVADN   99 (392)
Q Consensus        70 -------------------------------~v~~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~   99 (392)
                                                     ....+++.|++..++.+..++                   .|..+|..+
T Consensus       213 ~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T  292 (677)
T 1kb0_A          213 PSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT  292 (677)
T ss_dssp             TTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred             ccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC
Confidence                                           113578889999998887664                   599999999


Q ss_pred             ceeeeecccc------------eeEEEEeCCC---CEEEEecCCCcEEEEeCCCCCCCCcceeee--------ccccce-
Q psy17243        100 AQLLYSALGP------------SKCLTVTHNM---KYIVSGDGDNSLRIWPTSPQTHKDDERFTV--------SHSEEI-  155 (392)
Q Consensus       100 ~~~~~~~~~~------------~~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--------~~~~~v-  155 (392)
                      ++.+..+...            ...+....+|   ..++.++.+|.++++|..+++.........        ....++ 
T Consensus       293 G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~  372 (677)
T 1kb0_A          293 GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIG  372 (677)
T ss_dssp             CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEE
T ss_pred             CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceee
Confidence            9987654321            1122233366   688999999999999998765432111100        000111 


Q ss_pred             -----------------------EEEEEEcCCCEEEEeeC----------------------------------------
Q psy17243        156 -----------------------TCFTVTWDSQYLITGSR----------------------------------------  172 (392)
Q Consensus       156 -----------------------~~~~~~~~~~~l~~~~~----------------------------------------  172 (392)
                                             ..++++|+..++++...                                        
T Consensus       373 ~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~  452 (677)
T 1kb0_A          373 IAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPK  452 (677)
T ss_dssp             CGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCC
T ss_pred             ccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCC
Confidence                                   15688998888887543                                        


Q ss_pred             ---CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccc-cceeEEEEcCC
Q psy17243        173 ---DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL-GCVTCVKLAGD  248 (392)
Q Consensus       173 ---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~d  248 (392)
                         .|.|..||+.+++.+..+. +..++....+. ..+.+++.++.||.+++||..+++.+..+.... ....-+.+..+
T Consensus       453 ~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~-~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~  530 (677)
T 1kb0_A          453 SKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLT-TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVD  530 (677)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             CCCccEEEEEeCCCCcEEeecC-CCCCCcCcceE-eCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeC
Confidence               2789999999999888776 33444444455 345577778999999999999999998886433 23345566788


Q ss_pred             CeEEEE
Q psy17243        249 GTVAMS  254 (392)
Q Consensus       249 g~~~~~  254 (392)
                      |+..+.
T Consensus       531 G~~~v~  536 (677)
T 1kb0_A          531 GRQYVS  536 (677)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            875544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=4.1e-10  Score=96.70  Aligned_cols=207  Identities=9%  Similarity=0.008  Sum_probs=137.6

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc----cccceEEEEEec
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS----HQSTILAVAVLS   78 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~~   78 (392)
                      ..++.|..||.++++.. .+. ....+.+++++++++++++. .+ .|.+||.++++.......    ....+..++++|
T Consensus        68 ~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~  143 (326)
T 2ghs_A           68 ILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP  143 (326)
T ss_dssp             GGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT
T ss_pred             CCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC
Confidence            34678899998876543 333 35679999999999877654 44 499999988875433221    124688999999


Q ss_pred             CCCEEEEEeC------CCeEEEEEcCCceeee--ecccceeEEEEeCCCCEEEEe-cCCCcEEEEeCC--CC-CCCCcce
Q psy17243         79 DSRRVVTSDK------AGVIAVWVADNAQLLY--SALGPSKCLTVTHNMKYIVSG-DGDNSLRIWPTS--PQ-THKDDER  146 (392)
Q Consensus        79 ~~~~l~~~~~------d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~--~~-~~~~~~~  146 (392)
                      +|+.+++...      .+.|..++  +++...  ........++++++++.++.+ ..++.|.+|++.  ++ .......
T Consensus       144 ~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~  221 (326)
T 2ghs_A          144 SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV  221 (326)
T ss_dssp             TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE
T ss_pred             CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceE
Confidence            9987665432      24566666  444322  112345689999999877655 457899999985  33 2211111


Q ss_pred             ee--eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEe-cCCCcEEEEecCC
Q psy17243        147 FT--VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVA-VTNKSLVVSGSKD  216 (392)
Q Consensus       147 ~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d  216 (392)
                      +.  .........+++.+++++.++...++.|.+||. +++.+..+..+...+++++|. +..+.++++...+
T Consensus       222 ~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          222 FIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            11  112345678999999987777666788999998 677777777666779999998 4444455555444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.43  E-value=2.9e-11  Score=114.80  Aligned_cols=224  Identities=13%  Similarity=0.063  Sum_probs=145.2

Q ss_pred             cCCcCeeEEEecCCCCeEEEE-----eCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCC--------
Q psy17243         24 GHLNTVSCVAISPNSIFAVSG-----SEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG--------   90 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~~~-----~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------   90 (392)
                      +|...+..++|||||++||.+     +....|++||+++++.+.... +......++|+ |++.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            355678899999999988843     333579999999998755311 11123578999 999999888774        


Q ss_pred             -----eEEEEEcCCce----eeeeccc----ceeEEEEeCCCCEEEEecC----CCcEEEEeCCCCCCCCcceeeecccc
Q psy17243         91 -----VIAVWVADNAQ----LLYSALG----PSKCLTVTHNMKYIVSGDG----DNSLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        91 -----~i~iwd~~~~~----~~~~~~~----~~~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                           .|++|++.+.+    .+.....    ....+.++|++++|+....    .+.|+++|+.....  .......+..
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~--~~~~l~~~~~  281 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA--PLLTVQGDLD  281 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC--CCEEEECSSS
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC--ceEEEeCCCC
Confidence                 39999998764    3444333    2467889999998866443    35899999875422  1222223444


Q ss_pred             ceEEEEEEcCCCEEEEeeC----CCcEEEEEcCCCeE--EEEEecCCCceeEEEEecCCCcEEEEecCCC--eEEEEECC
Q psy17243        154 EITCFTVTWDSQYLITGSR----DMSLKVWQVVGGKL--AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS--NLIVWDME  225 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iwd~~  225 (392)
                      ..... +++++..|+..+.    .+.|..+|+.++..  ...+..|...+.  .|++.++.++++...++  .|++|++.
T Consensus       282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            44444 6666666554443    36799999987654  345555665554  77755555555555565  68899987


Q ss_pred             CCceeeeec-ccccceeEEEEcCCCeEEEEc
Q psy17243        226 TGGEEHFLA-GHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       226 ~~~~~~~~~-~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      .+ ....+. .....+..+.+++++..++..
T Consensus       359 g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~  388 (693)
T 3iuj_A          359 GK-RVREVALPGLGSVSGFNGKHDDPALYFG  388 (693)
T ss_dssp             SC-EEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred             CC-eeEEeecCCCceEEeeecCCCCCEEEEE
Confidence            44 444443 234566777777777655443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.42  E-value=1.3e-13  Score=120.46  Aligned_cols=202  Identities=10%  Similarity=0.039  Sum_probs=119.5

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccccee-----
Q psy17243         37 NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK-----  111 (392)
Q Consensus        37 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----  111 (392)
                      ++..+++++.||.|+.||..+|+.+.++..  +.+.+..+..++..+++++.|+.|+.||.++++.+........     
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            466899999999999999999999888875  4555555666777788888999999999998887654432211     


Q ss_pred             EEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe
Q psy17243        112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV  191 (392)
Q Consensus       112 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  191 (392)
                      ...+. .+..+++++.++.|+.||..+++.......   + .   ...++|++..+++++.++.|+.||.++++.+..+.
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~-~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---A-F---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---C-C---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            11111 355788888899999999986654332221   1 1   13456688899999999999999999998765554


Q ss_pred             cCCCceeEEEEecCC---CcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeE
Q psy17243        192 GHTDHVSCVAVAVTN---KSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTV  251 (392)
Q Consensus       192 ~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~  251 (392)
                      .+.  .....+. .+   +..++.++.||.|+.||..+++.+.........+....++++|.+
T Consensus       158 ~~~--~~~~~~~-~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          158 YFD--YAASLPE-DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             EEE--ECCBCCC-CCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred             ccc--ccCcccc-CCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence            221  1222233 21   145666788999999999999988776633323334455667754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.40  E-value=5.5e-11  Score=101.20  Aligned_cols=212  Identities=10%  Similarity=0.029  Sum_probs=137.5

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccc----ccceEEEEEec
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH----QSTILAVAVLS   78 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~   78 (392)
                      ..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+ ++........    ...+..+++.+
T Consensus        64 ~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~  140 (305)
T 3dr2_A           64 LVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR  140 (305)
T ss_dssp             TTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT
T ss_pred             CCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC
Confidence            35678888987 444 34555567778999999999876666566889999976 5543222111    13467899999


Q ss_pred             CCCEEEE----EeC-------------CCeEEEEEcCCceeeee-cccceeEEEEeCCCCEEEEecCC------CcEEEE
Q psy17243         79 DSRRVVT----SDK-------------AGVIAVWVADNAQLLYS-ALGPSKCLTVTHNMKYIVSGDGD------NSLRIW  134 (392)
Q Consensus        79 ~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d------~~i~~~  134 (392)
                      +|+.+++    +..             .+.|..+|..+++.... .......++++|+++.|+++...      +.|.+|
T Consensus       141 dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~  220 (305)
T 3dr2_A          141 DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF  220 (305)
T ss_dssp             TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred             CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence            9998776    322             25678888766654322 22345689999999988887665      789999


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEec
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      ++.....................+++.++|+ |+++..+ .|.+|+. +++.+..+.... .+.+++|. ++++.|+.++
T Consensus       221 ~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~-~d~~~L~it~  295 (305)
T 3dr2_A          221 AWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFD-QAQQRLFITG  295 (305)
T ss_dssp             EEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEEC-TTSCEEEEEE
T ss_pred             EecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEe-CCCCEEEEEc
Confidence            9864321111111111233445688999998 5555545 4999997 567777776544 58899999 5665555555


Q ss_pred             CCCeEEEEE
Q psy17243        215 KDSNLIVWD  223 (392)
Q Consensus       215 ~dg~i~iwd  223 (392)
                      .++ +..++
T Consensus       296 ~~~-l~~~~  303 (305)
T 3dr2_A          296 GPC-LWMLP  303 (305)
T ss_dssp             TTE-EEEEE
T ss_pred             CCe-EEEEE
Confidence            543 43333

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.39  E-value=3.4e-10  Score=92.42  Aligned_cols=208  Identities=11%  Similarity=0.045  Sum_probs=145.9

Q ss_pred             ccceeeeccCCcC--eeEEEecCCCCeEEEEeC--CCeEEEEeCCCCceeEEeccccc-ceEEEEEecCCCEEEEE-eCC
Q psy17243         16 HELQSTMEGHLNT--VSCVAISPNSIFAVSGSE--DNTAKVWGLTLGSVVSTFKSHQS-TILAVAVLSDSRRVVTS-DKA   89 (392)
Q Consensus        16 ~~~~~~~~~h~~~--v~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~d   89 (392)
                      .+.+.++. |...  ...+.|++++.+.++.+.  ++.|.++|+.+++.+..+..... ....+++.  +..|+.+ -.+
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            45566664 5543  579999998755554443  57999999999999988763222 22345554  4455544 467


Q ss_pred             CeEEEEEcCCceeeeecccc-eeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeec--cccceEEEEEEcCCCE
Q psy17243         90 GVIAVWVADNAQLLYSALGP-SKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS--HSEEITCFTVTWDSQY  166 (392)
Q Consensus        90 ~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~  166 (392)
                      +.+.++|..+.+.+.++... .....++++++.++++..++.|.++|..+.+..........  .-..++.+.|. ++..
T Consensus        86 ~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence            89999999999988876543 34455777888888888889999999975543333322211  11235677887 6654


Q ss_pred             EEEeeCCCcEEEEEcCCCeEEEEEecC-------------CCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        167 LITGSRDMSLKVWQVVGGKLAQVLVGH-------------TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       167 l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      .+....++.|.+.|..+++.+..+...             ....+.++++|..+.+++++...+.|.+.++...
T Consensus       165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            444445789999999999998887632             1356899999777888999988999999987653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.35  E-value=1e-08  Score=85.33  Aligned_cols=240  Identities=11%  Similarity=0.027  Sum_probs=154.4

Q ss_pred             CCeEEEEECCCccce-----eeeccCCcCeeEEEecCCCCeEE-EEeCCCeEEEEeCCCCceeEEecccccceEEEEEec
Q psy17243          5 DCLVNVWQMNSHELQ-----STMEGHLNTVSCVAISPNSIFAV-SGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         5 dg~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~   78 (392)
                      .+.|+.+++......     ..+......+..++|++++..|+ +-..++.|..++.+.......+.........+++.+
T Consensus         9 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~   88 (267)
T 1npe_A            9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH   88 (267)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET
T ss_pred             CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEe
Confidence            357888888754321     11222234578999999655554 445678999999876654433332335678999999


Q ss_pred             CCCEEEEE-eCCCeEEEEEcCCcee--eeec-ccceeEEEEeCCCCEEEEecC---CCcEEEEeCCCCCCCCcceeeecc
Q psy17243         79 DSRRVVTS-DKAGVIAVWVADNAQL--LYSA-LGPSKCLTVTHNMKYIVSGDG---DNSLRIWPTSPQTHKDDERFTVSH  151 (392)
Q Consensus        79 ~~~~l~~~-~~d~~i~iwd~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~  151 (392)
                      ++..|+.+ ...+.|.+++++....  +... ......++++|++..|+.+..   .+.|..+++....   ........
T Consensus        89 ~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---~~~~~~~~  165 (267)
T 1npe_A           89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQDN  165 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECTT
T ss_pred             cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---cEEEEECC
Confidence            76666555 4567899999875432  2111 135578999997666666554   3688888875321   11111122


Q ss_pred             ccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        152 SEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      ......+++++++..|+.+. ..+.|.++|+........+.. ......++..  ++.++++...++.|.++|..+++.+
T Consensus       166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCce
Confidence            34578899999877666555 467899999875544333332 2334566654  5666666667789999999999988


Q ss_pred             eeecccc-cceeEEEEcCCCe
Q psy17243        231 HFLAGHL-GCVTCVKLAGDGT  250 (392)
Q Consensus       231 ~~~~~~~-~~v~~~~~~~dg~  250 (392)
                      ..+.... .....+++.|++.
T Consensus       243 ~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          243 DTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEECCSSCCCCCCEEEECSCC
T ss_pred             EEEccccccccceeeecCccC
Confidence            8876433 2467777777764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.34  E-value=3.5e-13  Score=117.82  Aligned_cols=188  Identities=7%  Similarity=0.012  Sum_probs=108.4

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccccc-ceE-EEEEecC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQS-TIL-AVAVLSD   79 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~-~~~~~~~   79 (392)
                      |+.||.|+.||..+++.+..+..  +.+.+..+..++..+++++.||.|+.||.++|+.+..+..+.. .+. +..+. .
T Consensus        15 gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~   91 (369)
T 2hz6_A           15 STLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-S   91 (369)
T ss_dssp             EETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC---
T ss_pred             EcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-c
Confidence            67899999999999999988876  5666666667787888888999999999999988766653321 110 00111 3


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEE
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFT  159 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~  159 (392)
                      +..+++++.++.++.||..+++.+..+..+. ...++|++..+++++.++.|+.||.++++..-..... .    .....
T Consensus        92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~----~~~~~  165 (369)
T 2hz6_A           92 DGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF-D----YAASL  165 (369)
T ss_dssp             ---CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEE-E----ECCBC
T ss_pred             CCEEEEEeCCCEEEEEECCCCcEEEEecCCC-cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc-c----ccCcc
Confidence            4567888889999999999999877665432 2445668889999999999999999866543322211 1    11222


Q ss_pred             EEcCC---CEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeE
Q psy17243        160 VTWDS---QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSC  199 (392)
Q Consensus       160 ~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~  199 (392)
                      +..+.   ..+++++.+|.|..||.++++.+..+. ...++..
T Consensus       166 ~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~  207 (369)
T 2hz6_A          166 PEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVA  207 (369)
T ss_dssp             CCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEE
T ss_pred             ccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEE
Confidence            33321   567788899999999999999887766 3344443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.34  E-value=4.4e-10  Score=98.66  Aligned_cols=239  Identities=11%  Similarity=0.066  Sum_probs=153.8

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccce-----EEEEE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTI-----LAVAV   76 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~   76 (392)
                      ++.++.|..+|.++++.+................  +..++.++.++.|..+|.++++.+..+.......     .....
T Consensus       109 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~  186 (376)
T 3q7m_A          109 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT  186 (376)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE
T ss_pred             EcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE
Confidence            4568899999999999887766443222222222  3467888889999999999999887766432211     12222


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCceeeeeccccee----------EEEEeC--CCCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         77 LSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK----------CLTVTH--NMKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        77 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      .  +..++++..++.+..+|..+++.+........          .+...|  .+..+++++.++.+..+|..+++..  
T Consensus       187 ~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~--  262 (376)
T 3q7m_A          187 A--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM--  262 (376)
T ss_dssp             E--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE--
T ss_pred             E--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE--
Confidence            2  45788888899999999999988765432210          011111  3567888888999999998755322  


Q ss_pred             ceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec-CCCceeEEEEecCCCcEEEEecCCCeEEEEE
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG-HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD  223 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  223 (392)
                        .... ......+..  ++..+++++.++.|..+|..+++.+..... ....+......   +..|+.++.+|.|.++|
T Consensus       263 --w~~~-~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d  334 (376)
T 3q7m_A          263 --WKRE-LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYLHWIN  334 (376)
T ss_dssp             --EEEC-CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTTSEEEEEE
T ss_pred             --eecc-CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCCCeEEEEE
Confidence              1111 122333333  466888888899999999999998776652 22233333333   45677788899999999


Q ss_pred             CCCCceeeeecccccceeEEEEcCCCeEEEE
Q psy17243        224 METGGEEHFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       224 ~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                      ..+++.+.........+.......++.+++.
T Consensus       335 ~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~  365 (376)
T 3q7m_A          335 VEDGRFVAQQKVDSSGFQTEPVAADGKLLIQ  365 (376)
T ss_dssp             TTTCCEEEEEECCTTCBCSCCEEETTEEEEE
T ss_pred             CCCCcEEEEEecCCCcceeCCEEECCEEEEE
Confidence            9999988776653333332222235555554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.34  E-value=4e-10  Score=107.00  Aligned_cols=221  Identities=14%  Similarity=0.051  Sum_probs=140.8

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCC-------------eEEEEeCCCCce----eEEe
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDN-------------TAKVWGLTLGSV----VSTF   64 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg-------------~v~iwd~~~~~~----~~~~   64 (392)
                      |+.+..|++||+.+++.+... .+......++|+ |++.|+.++.+.             .|++|++.++..    +...
T Consensus       151 G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~  228 (693)
T 3iuj_A          151 GSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA  228 (693)
T ss_dssp             SCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC
T ss_pred             CCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec
Confidence            445578999999999865431 122223678999 999998888774             399999987653    3333


Q ss_pred             cc-cccceEEEEEecCCCEEEEEeC----CCeEEEEEcCCce--e--eeecccceeEEEEeCCCCEEEEecC----CCcE
Q psy17243         65 KS-HQSTILAVAVLSDSRRVVTSDK----AGVIAVWVADNAQ--L--LYSALGPSKCLTVTHNMKYIVSGDG----DNSL  131 (392)
Q Consensus        65 ~~-~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~--~--~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i  131 (392)
                      .. |...+..+.|+||+++|+....    ...|+++|+.++.  .  +.......... +++++..|+..+.    .+.|
T Consensus       229 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l  307 (693)
T 3iuj_A          229 IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRL  307 (693)
T ss_dssp             SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEE
T ss_pred             CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEE
Confidence            33 4456788999999998865443    2589999987763  2  22222222233 5666666555443    3678


Q ss_pred             EEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCC---cEEEEEcCCCeEEEEEe-cCCCceeEEEEecCCC
Q psy17243        132 RIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM---SLKVWQVVGGKLAQVLV-GHTDHVSCVAVAVTNK  207 (392)
Q Consensus       132 ~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~  207 (392)
                      ..+|+....... ......+...+.  .|++++++|+....++   .|++||+..+. ...+. .....+..+.+++.+.
T Consensus       308 ~~~d~~~~~~~~-~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~  383 (693)
T 3iuj_A          308 VTVDAANPGPAH-WRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDP  383 (693)
T ss_dssp             EEEETTSCCGGG-CEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCS
T ss_pred             EEEeCCCCCccc-cEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCC
Confidence            899987543211 122334444444  8899998887766543   68999987554 34443 2345566777775555


Q ss_pred             cEEEEecC---CCeEEEEECCCCce
Q psy17243        208 SLVVSGSK---DSNLIVWDMETGGE  229 (392)
Q Consensus       208 ~~l~~~~~---dg~i~iwd~~~~~~  229 (392)
                      .++++.+.   -+.|..||+.+++.
T Consensus       384 ~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          384 ALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             CEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEEEecCCCCCCEEEEEECCCCeE
Confidence            55555432   27899999987754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.32  E-value=8.6e-10  Score=88.89  Aligned_cols=194  Identities=16%  Similarity=0.175  Sum_probs=135.0

Q ss_pred             cceeeeccCCcCe--eEEEecCCCCeEEEEeCCC--eEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe-CCCe
Q psy17243         17 ELQSTMEGHLNTV--SCVAISPNSIFAVSGSEDN--TAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD-KAGV   91 (392)
Q Consensus        17 ~~~~~~~~h~~~v--~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~   91 (392)
                      +.++++. |...-  ..+.|+ ++.++.+.+.+|  .|+++|+++++.+.++... .........+++..|.... .++.
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCE
Confidence            4455553 55443  789998 666667777766  8999999999999888743 3333333333455555554 5789


Q ss_pred             EEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeee-ccc-cceEEEEEEcCCCEEEE
Q psy17243         92 IAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV-SHS-EEITCFTVTWDSQYLIT  169 (392)
Q Consensus        92 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~  169 (392)
                      +.++|..+.+.+.++.-+.....+.+++..|+.+..++.|.++|..+.+......... +.. ..++.+.+. +|+..+.
T Consensus       109 v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan  187 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN  187 (262)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             EEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence            9999999999988877655556666788888888878899999998655443333321 111 334557776 6755544


Q ss_pred             eeCCCcEEEEEcCCCeEEEEEecC------------CCceeEEEEecCCCcEEEEec
Q psy17243        170 GSRDMSLKVWQVVGGKLAQVLVGH------------TDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       170 ~~~dg~i~i~d~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      .-.+..|.+.|.++++.+..+...            ....+.|+++|..+.++++|-
T Consensus       188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            446889999999999998887532            135689999977777777774

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.31  E-value=3.8e-10  Score=101.48  Aligned_cols=254  Identities=11%  Similarity=0.020  Sum_probs=174.0

Q ss_pred             CCccCCeEEEEECCCccceeeec---------------------c------------C------CcCeeEEEecC-----
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTME---------------------G------------H------LNTVSCVAISP-----   36 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~---------------------~------------h------~~~v~~~~~~~-----   36 (392)
                      +|+..|.|+|+-+.+++.++.+.                     .            +      .+.......|.     
T Consensus        20 s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g~~   99 (595)
T 1fwx_A           20 SSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKY   99 (595)
T ss_dssp             CCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETTEE
T ss_pred             eCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCCCc
Confidence            68999999999998876655441                     0            1      11222345554     


Q ss_pred             CCCeEEEEeC-CCeEEEEeCCCCceeEEecc-cccceEEEEE-e-cCCCEEEEEeC------------------CCeEEE
Q psy17243         37 NSIFAVSGSE-DNTAKVWGLTLGSVVSTFKS-HQSTILAVAV-L-SDSRRVVTSDK------------------AGVIAV   94 (392)
Q Consensus        37 ~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~~------------------d~~i~i   94 (392)
                      ||++++.... ++.|.+.|+++.++.+.+.- .......+++ . |+++++++++.                  ++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            7777776654 56799999999998884432 2345788888 4 99999998852                  357999


Q ss_pred             EEcCCceeeeecc--cceeEEEEeCCCCEEEEecCCC--------------------------------------cEEEE
Q psy17243         95 WVADNAQLLYSAL--GPSKCLTVTHNMKYIVSGDGDN--------------------------------------SLRIW  134 (392)
Q Consensus        95 wd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~--------------------------------------~i~~~  134 (392)
                      .|.++.+...+..  +....+.++|+++++++.+.+.                                      .|.+.
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI  259 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  259 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence            9999988876654  3445788999999998887553                                      36666


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCe------------EEEEEecCCCceeEEE
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGK------------LAQVLVGHTDHVSCVA  201 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------~~~~~~~~~~~v~~~~  201 (392)
                      |..+... ........-.....++.++|||+++++++ .+.+|.++|+.+.+            ...... -......++
T Consensus       260 D~~~~~~-~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~a  337 (595)
T 1fwx_A          260 DGRKEAS-SLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTA  337 (595)
T ss_dssp             ECSGGGC-CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEE
T ss_pred             eCcccCC-ceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEE
Confidence            7654211 11111222334567889999999877766 57899999998653            233332 234567889


Q ss_pred             EecCCCcEEEEecCCCeEEEEECCC----------Cceeeeecccccce-----eEEEEcCCCeEEEEcCC
Q psy17243        202 VAVTNKSLVVSGSKDSNLIVWDMET----------GGEEHFLAGHLGCV-----TCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       202 ~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-----~~~~~~~dg~~~~~~~~  257 (392)
                      |+| ++...++.-.|+.|.+||+.+          .+.+..+..|..+-     ..+.++|||+++++..+
T Consensus       338 F~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          338 FDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             ECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             ECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            994 556667777899999999987          45666666554432     23356899999998754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.31  E-value=5.8e-10  Score=97.97  Aligned_cols=217  Identities=7%  Similarity=-0.038  Sum_probs=139.5

Q ss_pred             CCCCeEEEEeCC-----CeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe----------CCCeEEEEEcCCc
Q psy17243         36 PNSIFAVSGSED-----NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD----------KAGVIAVWVADNA  100 (392)
Q Consensus        36 ~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~  100 (392)
                      ++++.++++...     +.|.++|..+++.+.++.....+  .+.++||+++++++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            466666655442     69999999999999999866666  899999999888876          4678999999999


Q ss_pred             eeeeeccc----------ceeEEEEeCCCCEEEEecC--CCcEEEEeCCCCCCCCcceeeec----cccceEEEEEEc--
Q psy17243        101 QLLYSALG----------PSKCLTVTHNMKYIVSGDG--DNSLRIWPTSPQTHKDDERFTVS----HSEEITCFTVTW--  162 (392)
Q Consensus       101 ~~~~~~~~----------~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~----~~~~v~~~~~~~--  162 (392)
                      +.+..+.-          ....+.++|++++++++..  ++.|.++|+.+.+....+.....    ....-..+.+++  
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG  239 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG  239 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence            88776532          2457899999999999874  57899999986543322221000    000001122333  


Q ss_pred             -----------------------------------CCCEEEEeeCCCcEEEEEcCCCeEE--EEEec----------CCC
Q psy17243        163 -----------------------------------DSQYLITGSRDMSLKVWQVVGGKLA--QVLVG----------HTD  195 (392)
Q Consensus       163 -----------------------------------~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~----------~~~  195 (392)
                                                         ++..++.....+.+.+.|.......  ..+.-          ...
T Consensus       240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~  319 (426)
T 3c75_H          240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG  319 (426)
T ss_dssp             SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred             CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence                                               3333333334455555555433211  11100          001


Q ss_pred             ceeEEEEecCCCcEEEEec---------CCCeEEEEECCCCceeeeecccccceeEEEEcCCCe-EEEEc
Q psy17243        196 HVSCVAVAVTNKSLVVSGS---------KDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT-VAMSD  255 (392)
Q Consensus       196 ~v~~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~-~~~~~  255 (392)
                      ....++++|..+.++++..         .++.|.++|..+.+.+..+.. ......+.|+|||+ .+++.
T Consensus       320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~  388 (426)
T 3c75_H          320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYAL  388 (426)
T ss_dssp             SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEE
T ss_pred             CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEE
Confidence            1123678855555555432         135799999999999998864 23588999999998 66664

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.31  E-value=1.5e-09  Score=94.37  Aligned_cols=211  Identities=9%  Similarity=0.055  Sum_probs=140.8

Q ss_pred             CccCCeEEEEECCCc----cceeeec------c-CCcCeeEEEecCCCCeEEEEeCC------CeEEEEeCCCCceeEEe
Q psy17243          2 GGMDCLVNVWQMNSH----ELQSTME------G-HLNTVSCVAISPNSIFAVSGSED------NTAKVWGLTLGSVVSTF   64 (392)
Q Consensus         2 g~~dg~i~vwd~~~~----~~~~~~~------~-h~~~v~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~   64 (392)
                      |-.++.|.|+|+.+.    ++.++++      . ....-..+...|+| +++++..+      |.|.++|.++++.+.++
T Consensus       102 ~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~  180 (462)
T 2ece_A          102 GLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKW  180 (462)
T ss_dssp             BTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEEC
T ss_pred             cCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEE
Confidence            456788999999755    5666662      1 11234567788999 66666555      78999999999999988


Q ss_pred             cccccc---eEEEEEecCCCEEEEEe-------------------CCCeEEEEEcCCceeeeecccc-----eeEEEE--
Q psy17243         65 KSHQST---ILAVAVLSDSRRVVTSD-------------------KAGVIAVWVADNAQLLYSALGP-----SKCLTV--  115 (392)
Q Consensus        65 ~~~~~~---v~~~~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~--  115 (392)
                      .....+   -..+.|+|+++.+++..                   ....|.+||+.+++.+.++...     ...+.|  
T Consensus       181 ~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~  260 (462)
T 2ece_A          181 EIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLH  260 (462)
T ss_dssp             CSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECS
T ss_pred             ccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeE
Confidence            733222   34588899999888874                   3689999999998777665442     234444  


Q ss_pred             eCCCCEEEEecC------CCcEEEEeCCCCCCCCcceeeec-----------------cccceEEEEEEcCCCEEEEeeC
Q psy17243        116 THNMKYIVSGDG------DNSLRIWPTSPQTHKDDERFTVS-----------------HSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus       116 ~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      +|+++++++++.      ++.|.+|....+...........                 .......+.+++|+++|+++..
T Consensus       261 ~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr  340 (462)
T 2ece_A          261 DPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW  340 (462)
T ss_dssp             STTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET
T ss_pred             CCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC
Confidence            999999888774      56787665542111100000000                 0245678999999999988876


Q ss_pred             -CCcEEEEEcCC---CeEEEEEecCC--------------CceeEEEEecCCCcEEEEec
Q psy17243        173 -DMSLKVWQVVG---GKLAQVLVGHT--------------DHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       173 -dg~i~i~d~~~---~~~~~~~~~~~--------------~~v~~~~~~~~~~~~l~~~~  214 (392)
                       .+.|.+||+..   .+.+..+....              ..-..++++ +++++|+.+.
T Consensus       341 g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS-pDGk~LyVaN  399 (462)
T 2ece_A          341 GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS-RDGRRVYVTN  399 (462)
T ss_dssp             TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC-TTSSEEEEEC
T ss_pred             CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc-CCCCEEEEEc
Confidence             68999999853   35555554221              135788999 5666666654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.30  E-value=1e-08  Score=89.84  Aligned_cols=221  Identities=11%  Similarity=0.029  Sum_probs=143.6

Q ss_pred             CccCCeEEEEECCCccceeeeccC---------CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGH---------LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTIL   72 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h---------~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~   72 (392)
                      ++.++.|..+|.++++.+......         ...+.+.- ..++..++.++.++.|..+|.++|+.+-..........
T Consensus        59 ~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~  137 (376)
T 3q7m_A           59 ADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALS  137 (376)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             EcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEc
Confidence            456789999999999988776542         12232221 12345678888899999999999998876654332211


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccccee--------EEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         73 AVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK--------CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        73 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      .....  +..+++++.++.+..+|..+++.+........        ....  .+..++++..++.+..+|..+++..-.
T Consensus       138 ~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~  213 (376)
T 3q7m_A          138 RPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQ  213 (376)
T ss_dssp             CCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEE
T ss_pred             CCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEE
Confidence            22222  45788889999999999999988765543211        1122  245788888899999999875543211


Q ss_pred             ceeeecc-cc---c---e-EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCC
Q psy17243        145 ERFTVSH-SE---E---I-TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKD  216 (392)
Q Consensus       145 ~~~~~~~-~~---~---v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  216 (392)
                      ....... ..   .   + ....+  .+..+++++.++.+..+|.++++.+.....  .....+...   +..++.++.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~---~~~l~~~~~~  286 (376)
T 3q7m_A          214 QRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD---GNRIYLVDQN  286 (376)
T ss_dssp             EECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE---TTEEEEEETT
T ss_pred             EecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE---CCEEEEEcCC
Confidence            1110000 00   0   0 01111  256788888899999999999988766542  334444443   4456667789


Q ss_pred             CeEEEEECCCCceeeeec
Q psy17243        217 SNLIVWDMETGGEEHFLA  234 (392)
Q Consensus       217 g~i~iwd~~~~~~~~~~~  234 (392)
                      +.|..+|..+++.+....
T Consensus       287 g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          287 DRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             CCEEEEETTTCCEEEEEC
T ss_pred             CeEEEEECCCCcEEEeec
Confidence            999999999999877665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.28  E-value=1e-08  Score=89.22  Aligned_cols=217  Identities=12%  Similarity=0.069  Sum_probs=142.6

Q ss_pred             CCCCeEE-EEeCCCeEEEEeCCCC----ceeEEec-------ccccceEEEEEecCCCEEEEEeCC------CeEEEEEc
Q psy17243         36 PNSIFAV-SGSEDNTAKVWGLTLG----SVVSTFK-------SHQSTILAVAVLSDSRRVVTSDKA------GVIAVWVA   97 (392)
Q Consensus        36 ~~~~~l~-~~~~dg~v~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~   97 (392)
                      +++++|+ .+-.++.|.++|+.+.    +..+.+.       .....-..+...|++ .++++..+      +.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            6777665 4667789999999755    5666663       112245667888999 66666555      78999999


Q ss_pred             CCceeeeecccc------eeEEEEeCCCCEEEEec-------------------CCCcEEEEeCCCCCCCCcceeeec-c
Q psy17243         98 DNAQLLYSALGP------SKCLTVTHNMKYIVSGD-------------------GDNSLRIWPTSPQTHKDDERFTVS-H  151 (392)
Q Consensus        98 ~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~-------------------~d~~i~~~d~~~~~~~~~~~~~~~-~  151 (392)
                      ++.+.+......      ...+.|+|+++.+++..                   ...+|.+||+.+.+...  .+..+ .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--tI~vg~~  249 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--SLTLGEE  249 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--EEESCTT
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--EEecCCC
Confidence            999988776532      23478899999888885                   36899999998542222  12221 1


Q ss_pred             ccceEEEEE--EcCCCEEEEeeC------CCcEEEEEcCCCeE--EEEE--ecC----------------CCceeEEEEe
Q psy17243        152 SEEITCFTV--TWDSQYLITGSR------DMSLKVWQVVGGKL--AQVL--VGH----------------TDHVSCVAVA  203 (392)
Q Consensus       152 ~~~v~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~--~~~~--~~~----------------~~~v~~~~~~  203 (392)
                      ......+.|  +|++++++++++      +++|.+|....++.  .+.+  ...                ......|.++
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence            233445555  999999888774      56888776655431  1111  110                1346788999


Q ss_pred             cCCCcEEE-EecCCCeEEEEECCC---Cceeeeecccc--------------cceeEEEEcCCCeEEEEcC
Q psy17243        204 VTNKSLVV-SGSKDSNLIVWDMET---GGEEHFLAGHL--------------GCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       204 ~~~~~~l~-~~~~dg~i~iwd~~~---~~~~~~~~~~~--------------~~v~~~~~~~dg~~~~~~~  256 (392)
                      + ++++|. +.-..+.|.+||+..   .+.+..+....              +.-..++++|||++++...
T Consensus       330 ~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          330 L-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             T-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             C-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            4 555554 444578999999863   34444443210              1257899999999888764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.26  E-value=1.4e-09  Score=87.66  Aligned_cols=192  Identities=13%  Similarity=0.077  Sum_probs=133.4

Q ss_pred             cceeeeccCCcC--eeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEE--EEEecCCCEEEEEeCCCeE
Q psy17243         17 ELQSTMEGHLNT--VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILA--VAVLSDSRRVVTSDKAGVI   92 (392)
Q Consensus        17 ~~~~~~~~h~~~--v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~d~~i   92 (392)
                      +.+.++. |...  ...+.|+. +.+..+.+.+|.|+++|+++++.+.++ . ......  +++.. ++..+..-.++.+
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v  118 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred             EEEEEEc-CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEE
Confidence            3445553 5433  46888874 566777888899999999999998887 3 233333  44432 2344445568999


Q ss_pred             EEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeec--cccceEEEEEEcCCCEEEEe
Q psy17243         93 AVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS--HSEEITCFTVTWDSQYLITG  170 (392)
Q Consensus        93 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~  170 (392)
                      .+||..+.+.+.++..+.....+.++++.|+.+..++.|.++|..+.+..........  .-..++.+.|. +|+..+..
T Consensus       119 ~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv  197 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI  197 (268)
T ss_dssp             EEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             EEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence            9999999999887765544455557788888888899999999886554433333221  11244667776 67544444


Q ss_pred             eCCCcEEEEEcCCCeEEEEEecC-------------CCceeEEEEecCCCcEEEEec
Q psy17243        171 SRDMSLKVWQVVGGKLAQVLVGH-------------TDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       171 ~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      -.+..|.+.|.++++.+..+...             ....+.|+++|..+.++++|-
T Consensus       198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            46789999999999988887531             135689999987888888874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.26  E-value=1.2e-09  Score=94.59  Aligned_cols=197  Identities=8%  Similarity=-0.028  Sum_probs=131.0

Q ss_pred             cCCcCeeEEEecCCCCeEEEEeC-----CCeEEEEeCCCCceeEEeccc------ccceEEEEEecCCCEEEEE-e---C
Q psy17243         24 GHLNTVSCVAISPNSIFAVSGSE-----DNTAKVWGLTLGSVVSTFKSH------QSTILAVAVLSDSRRVVTS-D---K   88 (392)
Q Consensus        24 ~h~~~v~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~-~---~   88 (392)
                      .|...+..++++++++++++-..     ++.|.+||+.+++.+..+...      ...+..+++.+++..++.+ .   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            35578999999999876655433     578999999999877766532      2346899999865555444 3   5


Q ss_pred             CCeEEEEEcCCceeeeecc--------------------------------cceeEEEEeCCCCEEEEecCCC-cEEEEe
Q psy17243         89 AGVIAVWVADNAQLLYSAL--------------------------------GPSKCLTVTHNMKYIVSGDGDN-SLRIWP  135 (392)
Q Consensus        89 d~~i~iwd~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~~~d~-~i~~~d  135 (392)
                      ++.|.+||+.+++......                                .....++++|+++.|+++...+ .+..++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            7899999998776544221                                1246799999999888887765 555554


Q ss_pred             CCC---CCCC-----CcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec-CCCceeEEEEecCC
Q psy17243        136 TSP---QTHK-----DDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG-HTDHVSCVAVAVTN  206 (392)
Q Consensus       136 ~~~---~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~  206 (392)
                      ...   ....     .... ..++......++++++++++++...++.|.+||..+++....... +......+++. ++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~-~~  301 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG-SD  301 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC-TT
T ss_pred             HHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC-CC
Confidence            321   0000     0001 112333556789999999988888899999999856764333322 23467899998 45


Q ss_pred             CcEEEEecCCCeEEEE
Q psy17243        207 KSLVVSGSKDSNLIVW  222 (392)
Q Consensus       207 ~~~l~~~~~dg~i~iw  222 (392)
                      +.++++.+..+.+.+|
T Consensus       302 g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          302 GYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             SCEEEEECCGGGSGGG
T ss_pred             CcEEEEeCcccccccc
Confidence            7777776655444433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.21  E-value=1.4e-08  Score=81.14  Aligned_cols=192  Identities=11%  Similarity=0.072  Sum_probs=132.1

Q ss_pred             cceeeeccCCc--CeeEEEecCCCCeEEEEeCC--CeEEEEeCCCCceeEEecccccc-eEEEEEecCCCEEE-EEeCCC
Q psy17243         17 ELQSTMEGHLN--TVSCVAISPNSIFAVSGSED--NTAKVWGLTLGSVVSTFKSHQST-ILAVAVLSDSRRVV-TSDKAG   90 (392)
Q Consensus        17 ~~~~~~~~h~~--~v~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~-~~~~d~   90 (392)
                      +.+.++ .|..  -...+.|++ +.++.+.+.+  ..|+.+|+++++.+.++...... -..+++.  +..|+ ..-.++
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence            455566 3654  356899987 5555666665  48999999999999888643322 1234443  44444 445688


Q ss_pred             eEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc---cceEEEEEEcCCCEE
Q psy17243         91 VIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS---EEITCFTVTWDSQYL  167 (392)
Q Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l  167 (392)
                      .+.++|..+.+.+.++..+.....+.+++..|+++..++.|.++|..+.+......... +.   ..++.+.+. +++..
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~~~lNeLe~~-~G~ly  163 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPLDNLNELEWV-NGELL  163 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TTEEE
T ss_pred             EEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcccccceeeEEe-CCEEE
Confidence            99999999999988776555555666778888888889999999998654443333321 11   244566665 56555


Q ss_pred             EEeeCCCcEEEEEcCCCeEEEEEecC-------------CCceeEEEEecCCCcEEEEec
Q psy17243        168 ITGSRDMSLKVWQVVGGKLAQVLVGH-------------TDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       168 ~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      +..-.+..|.+.|.++++.+..+...             ....+.|+++|..+.++++|-
T Consensus       164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            44446789999999999998887521             135689999977788888774

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.21  E-value=3.2e-09  Score=91.26  Aligned_cols=231  Identities=13%  Similarity=0.046  Sum_probs=148.0

Q ss_pred             EEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe
Q psy17243          8 VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD   87 (392)
Q Consensus         8 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   87 (392)
                      |..+|. +++....+...........+.  +..|..++.++.|..+|.+ ++...........+.++...+++. ++.++
T Consensus        80 l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt  154 (330)
T 3hxj_A           80 VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGS  154 (330)
T ss_dssp             EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEEC
T ss_pred             EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEc
Confidence            777775 566655554333333333333  3457778888999999988 777766665555566667766665 66678


Q ss_pred             CCCeEEEEEcCCceeeeecc---cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCC
Q psy17243         88 KAGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS  164 (392)
Q Consensus        88 ~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (392)
                      .++.|..+|.. ++.+....   ..+.++...+++... +++  +.|..+| .++.   ...........+.++...+++
T Consensus       155 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~---~~~~~~~~~~~~~~~~~~~~g  226 (330)
T 3hxj_A          155 NDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGT---EKWNFYAGYWTVTRPAISEDG  226 (330)
T ss_dssp             TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSC---EEEEECCSSCCCSCCEECTTS
T ss_pred             CCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCc---EEEEEccCCcceeceEECCCC
Confidence            88999999998 66554432   234556666677644 444  8888998 3221   111122233556777777776


Q ss_pred             CEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEE
Q psy17243        165 QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK  244 (392)
Q Consensus       165 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  244 (392)
                      . |+.++.++.|..+|. +++.+..+......+..+... .++ .|..++.+|.|..+|. +++.+..+......+.++.
T Consensus       227 ~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~-~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~  301 (330)
T 3hxj_A          227 T-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIG-NTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPV  301 (330)
T ss_dssp             C-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEEC-TTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCE
T ss_pred             e-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEc-CCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceE
Confidence            4 566677788988884 566666665444444555554 344 4556777889999996 6777766665556777888


Q ss_pred             EcCCCeEEEEcC
Q psy17243        245 LAGDGTVAMSDL  256 (392)
Q Consensus       245 ~~~dg~~~~~~~  256 (392)
                      ..++|++.+...
T Consensus       302 ~d~~g~l~~gt~  313 (330)
T 3hxj_A          302 IDENGTIYFGTR  313 (330)
T ss_dssp             ECTTCCEEEECT
T ss_pred             EcCCCEEEEEcC
Confidence            888888777653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.16  E-value=5.4e-09  Score=98.43  Aligned_cols=249  Identities=12%  Similarity=0.111  Sum_probs=158.0

Q ss_pred             CccCCeEEEEECCCccceeeeccCCc-CeeEEEecC---CCCeEEEEeC------CCeEEEEeCCCCceeEEecccc---
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLN-TVSCVAISP---NSIFAVSGSE------DNTAKVWGLTLGSVVSTFKSHQ---   68 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~---~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~---   68 (392)
                      ++.|+.|..+|..+|+.+..+..... ....+.-+|   ++ .++.+..      +|.|..+|.++|+.+-++....   
T Consensus       123 ~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p  201 (668)
T 1kv9_A          123 GTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDP  201 (668)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred             EcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCC
Confidence            46789999999999999887764211 001111122   34 4555433      5899999999999987764210   


Q ss_pred             ----------------------------cceEEEEEecCCCEEEEEeCCC-------------------eEEEEEcCCce
Q psy17243         69 ----------------------------STILAVAVLSDSRRVVTSDKAG-------------------VIAVWVADNAQ  101 (392)
Q Consensus        69 ----------------------------~~v~~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~  101 (392)
                                                  .....+++.|+...++.+..++                   .|..+|..+++
T Consensus       202 ~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~  281 (668)
T 1kv9_A          202 ALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK  281 (668)
T ss_dssp             TSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred             CccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc
Confidence                                        0112468888888888887776                   39999999999


Q ss_pred             eeeeccc------------ceeEEEEeCCCC---EEEEecCCCcEEEEeCCCCCCCCcceee-------e--ccccc---
Q psy17243        102 LLYSALG------------PSKCLTVTHNMK---YIVSGDGDNSLRIWPTSPQTHKDDERFT-------V--SHSEE---  154 (392)
Q Consensus       102 ~~~~~~~------------~~~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------~--~~~~~---  154 (392)
                      .+..+..            +.....+..+++   .++.++.+|.++++|..+++........       .  ....+   
T Consensus       282 ~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~  361 (668)
T 1kv9_A          282 LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEA  361 (668)
T ss_dssp             EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEEC
T ss_pred             eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccc
Confidence            8765542            112222334564   6889999999999998876543111000       0  00000   


Q ss_pred             ---------------------eEEEEEEcCCCEEEEee------------------------------------CCCcEE
Q psy17243        155 ---------------------ITCFTVTWDSQYLITGS------------------------------------RDMSLK  177 (392)
Q Consensus       155 ---------------------v~~~~~~~~~~~l~~~~------------------------------------~dg~i~  177 (392)
                                           -..++++|+..++++..                                    .+|.|.
T Consensus       362 ~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~  441 (668)
T 1kv9_A          362 PGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALL  441 (668)
T ss_dssp             TTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEE
T ss_pred             ccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEE
Confidence                                 01267788766666421                                    247899


Q ss_pred             EEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccce-eEEEEcCCCeEEE
Q psy17243        178 VWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCV-TCVKLAGDGTVAM  253 (392)
Q Consensus       178 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~dg~~~~  253 (392)
                      .||+.+++.+-+...+. +.....+. ..+.+++.++.|+.|+.||.++++.+..+....... .-+.+..+|+..+
T Consensus       442 A~D~~tG~~~W~~~~~~-~~~~~~~~-t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yv  516 (668)
T 1kv9_A          442 AWDPVKQKAAWKVPYPT-HWNGGTLS-TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (668)
T ss_dssp             EEETTTTEEEEEEEESS-SCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             EEeCCCCcEEEEccCCC-CCcCceeE-eCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEE
Confidence            99999999887766432 33333344 346677788999999999999999998876543211 2334456776433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.14  E-value=1.4e-08  Score=95.61  Aligned_cols=205  Identities=10%  Similarity=0.081  Sum_probs=140.7

Q ss_pred             cCCeEEEEECCCccceeeeccCCcC--------------------------------eeEEEecCCCCeEEEEeCCC---
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNT--------------------------------VSCVAISPNSIFAVSGSEDN---   48 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~--------------------------------v~~~~~~~~~~~l~~~~~dg---   48 (392)
                      .+|.|+.+|..+++++..+......                                ...++++|++.+++.+..++   
T Consensus       188 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w  267 (677)
T 1kb0_A          188 VRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPW  267 (677)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESS
T ss_pred             CCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccc
Confidence            3799999999999998776532211                                13578889888888877664   


Q ss_pred             ----------------eEEEEeCCCCceeEEecc--cc-------cceEEEEEecCC---CEEEEEeCCCeEEEEEcCCc
Q psy17243         49 ----------------TAKVWGLTLGSVVSTFKS--HQ-------STILAVAVLSDS---RRVVTSDKAGVIAVWVADNA  100 (392)
Q Consensus        49 ----------------~v~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~  100 (392)
                                      .|..+|.++|+.+-.++.  |.       ....-+....+|   ..++.++.+|.++++|..++
T Consensus       268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG  347 (677)
T 1kb0_A          268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG  347 (677)
T ss_dssp             CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence                            599999999999877653  21       122223344467   67899999999999999999


Q ss_pred             eeeeecccc--------------e------------------------eEEEEeCCCCEEEEecC---------------
Q psy17243        101 QLLYSALGP--------------S------------------------KCLTVTHNMKYIVSGDG---------------  127 (392)
Q Consensus       101 ~~~~~~~~~--------------~------------------------~~~~~~~~~~~l~~~~~---------------  127 (392)
                      +.+......              +                        ..++++|+..++++...               
T Consensus       348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g  427 (677)
T 1kb0_A          348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN  427 (677)
T ss_dssp             CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred             CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence            887543210              0                        14678888888877543               


Q ss_pred             ----------------------------CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEE
Q psy17243        128 ----------------------------DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVW  179 (392)
Q Consensus       128 ----------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  179 (392)
                                                  .+.|..||+.+++..    ....+..++....+..++.+++.++.||.+++|
T Consensus       428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~----W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~  503 (677)
T 1kb0_A          428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA----WSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAY  503 (677)
T ss_dssp             CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE----EEEEESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred             cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE----eecCCCCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence                                        167889998755432    222233344445566778899999999999999


Q ss_pred             EcCCCeEEEEEecCC-CceeEEEEecCCCcEEEE
Q psy17243        180 QVVGGKLAQVLVGHT-DHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       180 d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~  212 (392)
                      |.++++.+..+.... ....-+.+...+..+++.
T Consensus       504 D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          504 HAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             ECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence            999999998886433 223345555344445444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.13  E-value=1.1e-08  Score=96.49  Aligned_cols=207  Identities=12%  Similarity=0.090  Sum_probs=139.5

Q ss_pred             cCCeEEEEECCCccceeeeccC-------------------------------CcCeeEEEecCCCCeEEEEeCCCe---
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGH-------------------------------LNTVSCVAISPNSIFAVSGSEDNT---   49 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h-------------------------------~~~v~~~~~~~~~~~l~~~~~dg~---   49 (392)
                      .+|.|+.||..+|+++..+..-                               ......++++|+..+++.+..++.   
T Consensus       181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~  260 (689)
T 1yiq_A          181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD  260 (689)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence            4789999999999988776421                               011135788898888888887764   


Q ss_pred             ----------------EEEEeCCCCceeEEecc--cc-------cceEEEEEecCCC---EEEEEeCCCeEEEEEcCCce
Q psy17243         50 ----------------AKVWGLTLGSVVSTFKS--HQ-------STILAVAVLSDSR---RVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        50 ----------------v~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~  101 (392)
                                      |..+|.++|+.+-.++.  |.       .+........+++   .++.++.+|.++++|..+++
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence                            99999999999877764  21       1222223333565   78889999999999999998


Q ss_pred             eeeeccc-c-----------------------------------------eeEEEEeCCCCEEEEecC------------
Q psy17243        102 LLYSALG-P-----------------------------------------SKCLTVTHNMKYIVSGDG------------  127 (392)
Q Consensus       102 ~~~~~~~-~-----------------------------------------~~~~~~~~~~~~l~~~~~------------  127 (392)
                      .+..... +                                         -..++++|+..++++...            
T Consensus       341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~  420 (689)
T 1yiq_A          341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA  420 (689)
T ss_dssp             EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred             EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence            8732110 0                                         012678888888777532            


Q ss_pred             ---------------------------------CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCC
Q psy17243        128 ---------------------------------DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM  174 (392)
Q Consensus       128 ---------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  174 (392)
                                                       +|.|..||+.+++..-.    ..+..+...-.+...+.+++.++.||
T Consensus       421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~----~~~~~~~~~g~~~tagglvf~gt~dg  496 (689)
T 1yiq_A          421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWE----VPYVTIFNGGTLSTAGNLVFEGSADG  496 (689)
T ss_dssp             CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEE----EEESSSCCCCEEEETTTEEEEECTTS
T ss_pred             ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeE----ccCCCCccCccceECCCEEEEECCCC
Confidence                                             36788899875543221    12223333335566788999999999


Q ss_pred             cEEEEEcCCCeEEEEEecCCCc-eeEEEEecCCCcEEEEec
Q psy17243        175 SLKVWQVVGGKLAQVLVGHTDH-VSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~  214 (392)
                      .++.||.++++.+.++...... ..-+.|...+..+++..+
T Consensus       497 ~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          497 RVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             cEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence            9999999999999888744322 234566545555655443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.13  E-value=1.6e-09  Score=93.09  Aligned_cols=234  Identities=12%  Similarity=0.055  Sum_probs=149.7

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      |+.++.|..|| .+++....+..+...+.++...+++. |..++.+  |..+|. +++.+..+...........+.  +.
T Consensus        36 ~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~  108 (330)
T 3hxj_A           36 GSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--ED  108 (330)
T ss_dssp             SSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TT
T ss_pred             EcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CC
Confidence            56678899999 88887776665555567777777775 5555544  888885 666554444333222233333  55


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeeeccc---ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEE
Q psy17243         82 RVVTSDKAGVIAVWVADNAQLLYSALG---PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF  158 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~  158 (392)
                      .+.+++.++.+..+|.. ++.......   .+.++...+++. +++++.++.|..+|.. +...  . ........+.++
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~--~-~~~~~~~~~~~~  182 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEK--W-RFKTNDAITSAA  182 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEE--E-EEECSSCCCSCC
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEe--E-EEecCCCceeee
Confidence            78888889999999998 665544322   234555665665 6667788999999986 2221  1 111223445666


Q ss_pred             EEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccc
Q psy17243        159 TVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG  238 (392)
Q Consensus       159 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (392)
                      .+.+++.+. .++  +.|..+| .+++....+......+.++... .++. +..++.++.|..+|. +++.+..+.....
T Consensus       183 ~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~-~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~  255 (330)
T 3hxj_A          183 SIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS-EDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKR  255 (330)
T ss_dssp             EECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEEC-TTSC-EEEEETTTEEEEECT-TSCEEEEEECSSC
T ss_pred             EEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEEC-CCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCC
Confidence            666677644 444  7899999 7777777766555667888877 4444 445666788888874 5666666654444


Q ss_pred             ceeEEEEcCCCeEEEEc
Q psy17243        239 CVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       239 ~v~~~~~~~dg~~~~~~  255 (392)
                      .+..+...++|.+.+..
T Consensus       256 ~~~~~~~~~~g~l~v~t  272 (330)
T 3hxj_A          256 IESSPVIGNTDTIYFGS  272 (330)
T ss_dssp             CCSCCEECTTSCEEEEC
T ss_pred             ccccceEcCCCeEEEec
Confidence            45566677777776654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.11  E-value=4.2e-09  Score=90.98  Aligned_cols=199  Identities=8%  Similarity=-0.040  Sum_probs=128.6

Q ss_pred             eEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe----------CCCeEEEEEcCCceeeeecccc---------
Q psy17243         49 TAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD----------KAGVIAVWVADNAQLLYSALGP---------  109 (392)
Q Consensus        49 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~---------  109 (392)
                      .|.++|..+++.+.++.....+  .+.++|++++++++.          .++.|.+||+.+++.+.++..+         
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8889999999999999866666  799999999998886          3688999999999998876432         


Q ss_pred             -eeEEEEeCCCCEEEEecC--CCcEEE--EeCCCCCCCCccee------eec---------cccceEEEE----------
Q psy17243        110 -SKCLTVTHNMKYIVSGDG--DNSLRI--WPTSPQTHKDDERF------TVS---------HSEEITCFT----------  159 (392)
Q Consensus       110 -~~~~~~~~~~~~l~~~~~--d~~i~~--~d~~~~~~~~~~~~------~~~---------~~~~v~~~~----------  159 (392)
                       ...+.++|++++++++..  +..+.+  +|..+   ......      ...         ..+.+..+.          
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~  201 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence             468999999999999875  467888  88853   000000      000         000000000          


Q ss_pred             ----------------EEcCCCEEEEeeCCCcEEEEEcCCCe--EEEEEec-------C---CCceeEEEEecCCCcEEE
Q psy17243        160 ----------------VTWDSQYLITGSRDMSLKVWQVVGGK--LAQVLVG-------H---TDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       160 ----------------~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~-------~---~~~v~~~~~~~~~~~~l~  211 (392)
                                      ..+++..++..+. +.+.+.|+....  .+..+.-       +   ......++++|+.+.+++
T Consensus       202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence                            1334444444444 677777775432  2222210       0   011122678855555554


Q ss_pred             Eec---C-----CCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEE
Q psy17243        212 SGS---K-----DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       212 ~~~---~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~  254 (392)
                      +..   .     ++.+.++|+.+.+.+..+.... ....++|+|||+.++.
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~v  330 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNY  330 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEE
T ss_pred             EeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEE
Confidence            433   2     2356699999999998887543 6889999999984433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.09  E-value=2.8e-08  Score=91.64  Aligned_cols=250  Identities=12%  Similarity=-0.019  Sum_probs=155.2

Q ss_pred             CccCCeEEEEECCCccceeeeccCC--c--CeeE-EEecCCCCeEEEEeC------CCeEEEEeCCCCceeEEecccccc
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHL--N--TVSC-VAISPNSIFAVSGSE------DNTAKVWGLTLGSVVSTFKSHQST   70 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~--~--~v~~-~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~   70 (392)
                      ++.|+.|..+|..+++.+.......  .  .+.+ .... ++ .++.++.      ++.|..+|.++|+.+-++......
T Consensus       121 ~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~  198 (571)
T 2ad6_A          121 KQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSD  198 (571)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred             EeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCc
Confidence            4568999999999999887764321  1  1211 1111 44 4555544      799999999999988766532110


Q ss_pred             --------------------------------------eEEEEEecCCCEEEEEeCC----------------CeEEEEE
Q psy17243         71 --------------------------------------ILAVAVLSDSRRVVTSDKA----------------GVIAVWV   96 (392)
Q Consensus        71 --------------------------------------v~~~~~~~~~~~l~~~~~d----------------~~i~iwd   96 (392)
                                                            ...+++.++...++.+..+                +.|..+|
T Consensus       199 ~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald  278 (571)
T 2ad6_A          199 DSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRD  278 (571)
T ss_dssp             HHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEE
T ss_pred             cccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEe
Confidence                                                  0235667776777776542                3599999


Q ss_pred             cCCceeeeecccc---------eeE---EEEeCCCC---EEEEecCCCcEEEEeCCCCCCCCcceeee----------cc
Q psy17243         97 ADNAQLLYSALGP---------SKC---LTVTHNMK---YIVSGDGDNSLRIWPTSPQTHKDDERFTV----------SH  151 (392)
Q Consensus        97 ~~~~~~~~~~~~~---------~~~---~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~  151 (392)
                      .++++.+..+...         ...   +....+++   .++.++.+|.++++|..+++..-......          ..
T Consensus       279 ~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~  358 (571)
T 2ad6_A          279 LDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKT  358 (571)
T ss_dssp             TTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTT
T ss_pred             cCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccC
Confidence            9999887654321         111   12224663   57788889999999987664322111100          00


Q ss_pred             ccce--------------------------EEEEEEcCCCEEEEee----------------------------------
Q psy17243        152 SEEI--------------------------TCFTVTWDSQYLITGS----------------------------------  171 (392)
Q Consensus       152 ~~~v--------------------------~~~~~~~~~~~l~~~~----------------------------------  171 (392)
                      ..++                          ..++++|+..++++..                                  
T Consensus       359 g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~  438 (571)
T 2ad6_A          359 GTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGP  438 (571)
T ss_dssp             CSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTST
T ss_pred             CceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCcccc
Confidence            0111                          2457888877777653                                  


Q ss_pred             ---CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccc-eeEEEEcC
Q psy17243        172 ---RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGC-VTCVKLAG  247 (392)
Q Consensus       172 ---~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~  247 (392)
                         .+|.|..||+.+++.+.++... ..+....+. ..+.+++.++.||.|+.+|.++++.+.++...... -.-+.+..
T Consensus       439 ~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~-t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~  516 (571)
T 2ad6_A          439 TKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLY-TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF  516 (571)
T ss_dssp             TSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CCCCCCeEEEEECCCCCEEEEecCC-CCccceeEE-ECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEE
Confidence               3478999999999988776532 233322223 23456666889999999999999999887643321 12234557


Q ss_pred             CCeEEEEc
Q psy17243        248 DGTVAMSD  255 (392)
Q Consensus       248 dg~~~~~~  255 (392)
                      +|++++..
T Consensus       517 ~G~~yv~~  524 (571)
T 2ad6_A          517 KGKQYIGS  524 (571)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEE
Confidence            88766653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.04  E-value=6.1e-08  Score=89.39  Aligned_cols=249  Identities=13%  Similarity=0.035  Sum_probs=152.8

Q ss_pred             CccCCeEEEEECCCccceeeeccCCc----CeeE-EEecCCCCeEEEEe------CCCeEEEEeCCCCceeEEecccccc
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLN----TVSC-VAISPNSIFAVSGS------EDNTAKVWGLTLGSVVSTFKSHQST   70 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~----~v~~-~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~   70 (392)
                      ++.|+.|..+|..+|+.+........    .+.+ .... ++ .+++++      .+|.|..+|.++|+.+-++......
T Consensus       127 ~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~  204 (599)
T 1w6s_A          127 TQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPD  204 (599)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred             EcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCc
Confidence            45688999999999998877543210    1211 1111 44 455554      3799999999999988766532111


Q ss_pred             -------------------------------------e-EEEEEecCCCEEEEEeCC----------------CeEEEEE
Q psy17243         71 -------------------------------------I-LAVAVLSDSRRVVTSDKA----------------GVIAVWV   96 (392)
Q Consensus        71 -------------------------------------v-~~~~~~~~~~~l~~~~~d----------------~~i~iwd   96 (392)
                                                           + ..+++.++...++.+..+                +.|..+|
T Consensus       205 ~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald  284 (599)
T 1w6s_A          205 KDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRD  284 (599)
T ss_dssp             HHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEE
T ss_pred             cccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEe
Confidence                                                 0 135666777788877665                3799999


Q ss_pred             cCCceeeeecccce----------eEEEEe---CCC---CEEEEecCCCcEEEEeCCCCCCCCcceeee----------c
Q psy17243         97 ADNAQLLYSALGPS----------KCLTVT---HNM---KYIVSGDGDNSLRIWPTSPQTHKDDERFTV----------S  150 (392)
Q Consensus        97 ~~~~~~~~~~~~~~----------~~~~~~---~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~  150 (392)
                      .++++.+..+....          .-+.+.   .++   ..++.++.+|.++++|..+++..-......          .
T Consensus       285 ~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~  364 (599)
T 1w6s_A          285 ADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLK  364 (599)
T ss_dssp             TTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTT
T ss_pred             CCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccC
Confidence            99999876544310          111222   466   567778899999999987665332111100          0


Q ss_pred             cccce--------------------------EEEEEEcCCCEEEEee---------------------------------
Q psy17243        151 HSEEI--------------------------TCFTVTWDSQYLITGS---------------------------------  171 (392)
Q Consensus       151 ~~~~v--------------------------~~~~~~~~~~~l~~~~---------------------------------  171 (392)
                      ...++                          ..++++|+..++++..                                 
T Consensus       365 ~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~  444 (599)
T 1w6s_A          365 TGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKG  444 (599)
T ss_dssp             TCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTS
T ss_pred             CCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcC
Confidence            00011                          2356676665555421                                 


Q ss_pred             ------CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccc-eeEEE
Q psy17243        172 ------RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGC-VTCVK  244 (392)
Q Consensus       172 ------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~  244 (392)
                            ..|.|..||+.+++.+-+... ..+...-.+. ..+.+++.++.|+.|+.||.++|+.+.+++..... ..-+.
T Consensus       445 ~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~-tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~  522 (599)
T 1w6s_A          445 DRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMA-TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT  522 (599)
T ss_dssp             BTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             CcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceE-ecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEE
Confidence                  347899999999988776642 2222211122 23556677899999999999999999877643322 22355


Q ss_pred             EcCCCeEEEE
Q psy17243        245 LAGDGTVAMS  254 (392)
Q Consensus       245 ~~~dg~~~~~  254 (392)
                      +..+|+..+.
T Consensus       523 y~~~G~qyv~  532 (599)
T 1w6s_A          523 YTHKGTQYVA  532 (599)
T ss_dssp             EEETTEEEEE
T ss_pred             EEeCCEEEEE
Confidence            5678875443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.03  E-value=3.5e-08  Score=88.95  Aligned_cols=223  Identities=8%  Similarity=-0.021  Sum_probs=153.3

Q ss_pred             cCCeEEEEECCCccceeeecc-CCcCeeEEEe-c-CCCCeEEEEe------------------CCCeEEEEeCCCCceeE
Q psy17243          4 MDCLVNVWQMNSHELQSTMEG-HLNTVSCVAI-S-PNSIFAVSGS------------------EDNTAKVWGLTLGSVVS   62 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~-~-~~~~~l~~~~------------------~dg~v~iwd~~~~~~~~   62 (392)
                      .++.|.+.|+.+.+..+.+.- .......+++ + |+++++++++                  .++.+.+.|.++.+...
T Consensus       110 ~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~  189 (595)
T 1fwx_A          110 ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW  189 (595)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE
T ss_pred             CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE
Confidence            467799999999998885542 2345788888 5 8999998884                  34689999999999888


Q ss_pred             EecccccceEEEEEecCCCEEEEEeCCC--------------------------------------eEEEEEcCC--cee
Q psy17243         63 TFKSHQSTILAVAVLSDSRRVVTSDKAG--------------------------------------VIAVWVADN--AQL  102 (392)
Q Consensus        63 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------------------------------~i~iwd~~~--~~~  102 (392)
                      ++.-.. .-..++++|+|+++++.+.+.                                      .|.+.|..+  ++.
T Consensus       190 qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~  268 (595)
T 1fwx_A          190 QVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSL  268 (595)
T ss_dssp             EEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCS
T ss_pred             EEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCce
Confidence            887433 456788999999998887553                                      356666666  333


Q ss_pred             -eeecc--cceeEEEEeCCCCEEEEec-CCCcEEEEeCCCCCC--------CCcceeeeccccceEEEEEEcCCCEEEEe
Q psy17243        103 -LYSAL--GPSKCLTVTHNMKYIVSGD-GDNSLRIWPTSPQTH--------KDDERFTVSHSEEITCFTVTWDSQYLITG  170 (392)
Q Consensus       103 -~~~~~--~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  170 (392)
                       +..+.  ....++.++|||+++++++ .+..|.++|+.+...        .........-......++|+++|....+.
T Consensus       269 ~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~  348 (595)
T 1fwx_A          269 FTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSL  348 (595)
T ss_dssp             SEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEE
T ss_pred             eEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEE
Confidence             23332  2456899999999887766 578999999974310        01112222344667889999999434455


Q ss_pred             eCCCcEEEEEcCC----------CeEEEEEecCCCcee-----EEEEecCCCcEEEEecC---CCe----------EEEE
Q psy17243        171 SRDMSLKVWQVVG----------GKLAQVLVGHTDHVS-----CVAVAVTNKSLVVSGSK---DSN----------LIVW  222 (392)
Q Consensus       171 ~~dg~i~i~d~~~----------~~~~~~~~~~~~~v~-----~~~~~~~~~~~l~~~~~---dg~----------i~iw  222 (392)
                      ..|+.|.+||+.+          .+.+.++..|-.+-.     .+.++ +++++|++...   |+.          -.++
T Consensus       349 ~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~-~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~  427 (595)
T 1fwx_A          349 FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLD-ATNDWLVCLSKFSKDRFLNVGPLKPENDQLI  427 (595)
T ss_dssp             TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTT-CCSSEEEEEESCCTTSSCCCCSSCCEEEEEE
T ss_pred             ecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeC-CCCCEEEEcCCCCccccccCCCCCCCcceEE
Confidence            5699999999977          567777776654331     22335 67888877653   332          2889


Q ss_pred             ECCCCc
Q psy17243        223 DMETGG  228 (392)
Q Consensus       223 d~~~~~  228 (392)
                      |+..++
T Consensus       428 dis~~~  433 (595)
T 1fwx_A          428 DISGDK  433 (595)
T ss_dssp             ECSSSS
T ss_pred             EcCCCc
Confidence            996554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.03  E-value=1.5e-07  Score=76.81  Aligned_cols=187  Identities=7%  Similarity=-0.041  Sum_probs=126.0

Q ss_pred             ceeEEeccccc--ceEEEEEecCCCEEEEEeC--CCeEEEEEcCCceeeeeccc--c--eeEEEEeCCCCEEEE-ecCCC
Q psy17243         59 SVVSTFKSHQS--TILAVAVLSDSRRVVTSDK--AGVIAVWVADNAQLLYSALG--P--SKCLTVTHNMKYIVS-GDGDN  129 (392)
Q Consensus        59 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~--~--~~~~~~~~~~~~l~~-~~~d~  129 (392)
                      +.+.++. |..  ....+.|++++..+++.+.  ++.|.++|+.+++.+.....  .  ...+++.  ++.++. .-.++
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence            4455665 443  3589999998644444433  57999999999998876542  2  1234444  445554 44578


Q ss_pred             cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCC-----CceeEEEEec
Q psy17243        130 SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT-----DHVSCVAVAV  204 (392)
Q Consensus       130 ~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~  204 (392)
                      .+.++|..+.+......  .+...   ...+++|++.++++..++.|.++|..+.+.+..+.-..     ..++.+.|. 
T Consensus        87 ~v~viD~~t~~v~~~i~--~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-  160 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFT--HQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-  160 (266)
T ss_dssp             EEEEEETTTTEEEEEEE--CCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             EEEEEECCCCcEEEEEE--CCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence            99999997543332222  12011   23466788877777788999999999988887765321     135677887 


Q ss_pred             CCCcEEEEecCCCeEEEEECCCCceeeeecccc-------------cceeEEEEcCCCeEEEEc
Q psy17243        205 TNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL-------------GCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       205 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~~~~~~~dg~~~~~~  255 (392)
                       ++.+++....++.|.+.|..+++.+..+....             ...+.++|+|+++.+...
T Consensus       161 -dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT  223 (266)
T 2iwa_A          161 -NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT  223 (266)
T ss_dssp             -TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred             -CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence             46666666678999999999999988776321             255899999998655443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.01  E-value=5.4e-08  Score=78.50  Aligned_cols=186  Identities=10%  Similarity=0.065  Sum_probs=125.2

Q ss_pred             ceeEEecccccc--eEEEEEecCCCEEEEEeCCC--eEEEEEcCCceeeeecccc--eeEEEEeCCCCEEEEec-CCCcE
Q psy17243         59 SVVSTFKSHQST--ILAVAVLSDSRRVVTSDKAG--VIAVWVADNAQLLYSALGP--SKCLTVTHNMKYIVSGD-GDNSL  131 (392)
Q Consensus        59 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-~d~~i  131 (392)
                      +.+.++. |...  ...+.|+ ++..+.+.+.+|  .|+.+|+.+++.+.....+  ....-+.+.++.|+... .++.+
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence            3455664 5443  4788898 666666777766  8999999999988766432  22222333455555554 58899


Q ss_pred             EEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecC--C---CceeEEEEecCC
Q psy17243        132 RIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH--T---DHVSCVAVAVTN  206 (392)
Q Consensus       132 ~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~  206 (392)
                      .+||..+.+.......  ..    ....++++++.|+.+..++.|.++|..+.+.+..+.-.  .   ..++.+.|.  +
T Consensus       110 ~v~D~~t~~~~~ti~~--~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~  181 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNY--DG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--D  181 (262)
T ss_dssp             EEEETTTCCEEEEEEC--SS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--T
T ss_pred             EEEECccCcEEEEEEC--CC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--C
Confidence            9999975544333322  11    22334567888888777889999999999888776542  1   234557776  5


Q ss_pred             CcEEEEecCCCeEEEEECCCCceeeeeccc------------ccceeEEEEcCCCeEEEE
Q psy17243        207 KSLVVSGSKDSNLIVWDMETGGEEHFLAGH------------LGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       207 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~~~dg~~~~~  254 (392)
                      +.+.+..-.++.|.+.|..+++.+..+...            ....+.++++|+++.+..
T Consensus       182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfV  241 (262)
T 3nol_A          182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFV  241 (262)
T ss_dssp             TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEE
Confidence            666666667889999999999998876532            125589999997655444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.00  E-value=1e-07  Score=88.06  Aligned_cols=251  Identities=13%  Similarity=0.092  Sum_probs=153.0

Q ss_pred             CccCCeEEEEECCCccceeeeccCCc----Cee-EEEecC---CCC-eEEEEe------CCCeEEEEeCCCCceeEEecc
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLN----TVS-CVAISP---NSI-FAVSGS------EDNTAKVWGLTLGSVVSTFKS   66 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~----~v~-~~~~~~---~~~-~l~~~~------~dg~v~iwd~~~~~~~~~~~~   66 (392)
                      ++.|+.|..+|.++|+.+........    .+. ......   +++ .+++++      .++.|.-+|.++|+.+-....
T Consensus       123 ~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~  202 (582)
T 1flg_A          123 GTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF  202 (582)
T ss_dssp             EETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES
T ss_pred             EeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCC
Confidence            45688999999999998877653221    111 111111   233 566654      378999999999998765532


Q ss_pred             cccc-----------------------------------------eEEEEEecCCCEEEEEeC-----------------
Q psy17243         67 HQST-----------------------------------------ILAVAVLSDSRRVVTSDK-----------------   88 (392)
Q Consensus        67 ~~~~-----------------------------------------v~~~~~~~~~~~l~~~~~-----------------   88 (392)
                      ....                                         -..+++.|+...++.+..                 
T Consensus       203 ~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~  282 (582)
T 1flg_A          203 VEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNP  282 (582)
T ss_dssp             STTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCS
T ss_pred             CccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcc
Confidence            1100                                         013466677777777663                 


Q ss_pred             ---C----CeEEEEEcCCceeeeecccc----------eeEEEEe---CCC---CEEEEecCCCcEEEEeCCCCCCCCcc
Q psy17243         89 ---A----GVIAVWVADNAQLLYSALGP----------SKCLTVT---HNM---KYIVSGDGDNSLRIWPTSPQTHKDDE  145 (392)
Q Consensus        89 ---d----~~i~iwd~~~~~~~~~~~~~----------~~~~~~~---~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~  145 (392)
                         |    +.|..+|..+++.+..+...          ..-+...   .++   ..++.++.+|.++++|..+++..-..
T Consensus       283 ~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  362 (582)
T 1flg_A          283 HDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAF  362 (582)
T ss_dssp             TTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccc
Confidence               2    58999999999987765321          1112222   456   37888999999999998765432111


Q ss_pred             eeee----------cccc--------------------------------ceEEEEEEcCCCEEEEee------------
Q psy17243        146 RFTV----------SHSE--------------------------------EITCFTVTWDSQYLITGS------------  171 (392)
Q Consensus       146 ~~~~----------~~~~--------------------------------~v~~~~~~~~~~~l~~~~------------  171 (392)
                      ....          ....                                .-..++++|+..++++..            
T Consensus       363 ~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~  442 (582)
T 1flg_A          363 PFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEV  442 (582)
T ss_dssp             ESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCC
T ss_pred             ccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccc
Confidence            1100          0000                                001345666655554432            


Q ss_pred             ---------------------CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        172 ---------------------RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       172 ---------------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                                           .+|.|..||+.+++.+-+..... ++..-... ..+.+++.++.|+.|+.||.++++.+
T Consensus       443 ~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~-tagglvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          443 SYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLA-TAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             CCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEE-ETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceE-eCCCEEEEECCCCcEEEEECCCCCEE
Confidence                                 25789999999999887765332 22221222 23556777999999999999999999


Q ss_pred             eeecccccce-eEEEEcCCCeEEEE
Q psy17243        231 HFLAGHLGCV-TCVKLAGDGTVAMS  254 (392)
Q Consensus       231 ~~~~~~~~~v-~~~~~~~dg~~~~~  254 (392)
                      .+++...... .-+.+..+|+..+.
T Consensus       521 W~~~~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          521 WKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEecCCCCcccCceEEEECCEEEEE
Confidence            8887543322 23666678875554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.98  E-value=2.7e-06  Score=70.45  Aligned_cols=211  Identities=9%  Similarity=0.016  Sum_probs=129.6

Q ss_pred             CeEEEEeCCCeEEEEeCCCCcee-----EEecccccceEEEEEecCCCEEEEEe-CCCeEEEEEcCCceeeeec---ccc
Q psy17243         39 IFAVSGSEDNTAKVWGLTLGSVV-----STFKSHQSTILAVAVLSDSRRVVTSD-KAGVIAVWVADNAQLLYSA---LGP  109 (392)
Q Consensus        39 ~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~---~~~  109 (392)
                      ++|+.+.. +.|+.++++.....     ..+.........+++++++..|+.+. ..+.|..+++.........   ...
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            45555543 47888887754321     12222234578999999776666555 5689999999876433222   135


Q ss_pred             eeEEEEeCCCCEEEEe-cCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC---CCcEEEEEcCCCe
Q psy17243        110 SKCLTVTHNMKYIVSG-DGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR---DMSLKVWQVVGGK  185 (392)
Q Consensus       110 ~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~  185 (392)
                      ...+++++++..++.+ ...+.|.++++....   ..............++++|++..|+.+..   .+.|..+++... 
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~---~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-  156 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-  156 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-
Confidence            6789999976555554 456889999986322   11111122245689999997666666554   368888887543 


Q ss_pred             EEEEEe-cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        186 LAQVLV-GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       186 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ....+. ..-.....+++++.++.++++-...+.|.++|+........+.. ......++.. ++.+.+++.
T Consensus       157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~  226 (267)
T 1npe_A          157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDW  226 (267)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEET
T ss_pred             CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEEC
Confidence            223332 22345788999965667777777789999999975443333332 2233456654 455555543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.97  E-value=7.3e-07  Score=76.20  Aligned_cols=216  Identities=10%  Similarity=0.013  Sum_probs=135.7

Q ss_pred             ccCCeEEEEECCCccceeeecc--------------------CCcCeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCcee
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEG--------------------HLNTVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVV   61 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~--------------------h~~~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~   61 (392)
                      ..++.|..|+..+++.. .+..                    .......+++.+ +++ |+.+...+.|..+|..+++. 
T Consensus        37 ~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-  113 (322)
T 2fp8_A           37 VQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-  113 (322)
T ss_dssp             CTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-
T ss_pred             cCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-
Confidence            45678888887654432 2210                    113578899998 665 55554455688888775532 


Q ss_pred             EEecc-----cccceEEEEEec-CCCEEEEEeC-----------------CCeEEEEEcCCceeeee--cccceeEEEEe
Q psy17243         62 STFKS-----HQSTILAVAVLS-DSRRVVTSDK-----------------AGVIAVWVADNAQLLYS--ALGPSKCLTVT  116 (392)
Q Consensus        62 ~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~--~~~~~~~~~~~  116 (392)
                      ..+..     .......+++.+ +|+..++-..                 ++.|..+|..+++....  .......++++
T Consensus       114 ~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~  193 (322)
T 2fp8_A          114 TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVS  193 (322)
T ss_dssp             EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEEC
T ss_pred             EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEEC
Confidence            22211     113468899999 8876665432                 36788899877654322  12345679999


Q ss_pred             CCCCEEEEe-cCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC----------CCcEEEEEcCCCe
Q psy17243        117 HNMKYIVSG-DGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR----------DMSLKVWQVVGGK  185 (392)
Q Consensus       117 ~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~  185 (392)
                      ++++.|+++ ...+.|.+|++....... ......... ...+++.++|++.++...          .+.|..+|. .++
T Consensus       194 ~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~  270 (322)
T 2fp8_A          194 ADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGN  270 (322)
T ss_dssp             TTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSC
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCC
Confidence            999877666 556899999987432211 111111223 678899999986666544          467888886 477


Q ss_pred             EEEEEecCC----CceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        186 LAQVLVGHT----DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       186 ~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      .+..+....    ..++.+++.  ++.++++...++.|..+++..
T Consensus       271 ~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          271 ILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC--
T ss_pred             EEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEeccc
Confidence            776665432    346666664  567777777788999998763

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.94  E-value=9.3e-07  Score=75.54  Aligned_cols=221  Identities=13%  Similarity=0.068  Sum_probs=138.2

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc--------------------cccceEEEEEecCCCEEEEE
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS--------------------HQSTILAVAVLSDSRRVVTS   86 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~~~   86 (392)
                      ....++++.+++++++++..++.|..|+..+++.. .+..                    .......+++.++...|+++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            34567899999987888888999999998765433 2210                    11357889999744456666


Q ss_pred             eCCCeEEEEEcCCcee--eeec-c----cceeEEEEeC-CCCEEEEecC-----------------CCcEEEEeCCCCCC
Q psy17243         87 DKAGVIAVWVADNAQL--LYSA-L----GPSKCLTVTH-NMKYIVSGDG-----------------DNSLRIWPTSPQTH  141 (392)
Q Consensus        87 ~~d~~i~iwd~~~~~~--~~~~-~----~~~~~~~~~~-~~~~l~~~~~-----------------d~~i~~~d~~~~~~  141 (392)
                      ...+.+..+|..+++.  +... .    .....+++.+ +++..++-..                 ++.|..||......
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            6566688888876643  2111 1    1346788999 8876665432                 36788888753321


Q ss_pred             CCcceeeeccccceEEEEEEcCCCEEEEe-eCCCcEEEEEcCCCe--EEEEEecCCCceeEEEEecCCCcEEEEecC---
Q psy17243        142 KDDERFTVSHSEEITCFTVTWDSQYLITG-SRDMSLKVWQVVGGK--LAQVLVGHTDHVSCVAVAVTNKSLVVSGSK---  215 (392)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---  215 (392)
                          ............++++++++.|+.+ ...+.|.+|++....  ....+....+ ...+++. +++++.++...   
T Consensus       178 ----~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d-~~G~l~va~~~~~~  251 (322)
T 2fp8_A          178 ----TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN-ADGHFWVSSSEELD  251 (322)
T ss_dssp             ----EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC-TTSCEEEEEEEETT
T ss_pred             ----EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC-CCCCEEEEecCccc
Confidence                1111122345678999999876665 456899999987421  1112211223 6788888 56666665543   


Q ss_pred             -------CCeEEEEECCCCceeeeecccc----cceeEEEEcCCCeEEEEcC
Q psy17243        216 -------DSNLIVWDMETGGEEHFLAGHL----GCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       216 -------dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~dg~~~~~~~  256 (392)
                             .+.|..+|.. ++.+..+....    ..+..+++ .++++.+.+.
T Consensus       252 ~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~  301 (322)
T 2fp8_A          252 GNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTL  301 (322)
T ss_dssp             SSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECS
T ss_pred             ccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeec
Confidence                   4678888864 77666665432    34666666 4677777754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.94  E-value=6.3e-06  Score=69.80  Aligned_cols=233  Identities=11%  Similarity=0.026  Sum_probs=139.6

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC--CeEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA--GVIA   93 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~   93 (392)
                      .+.+..+... .....++|+++++++++-..++.|..||.+. +....+. .......+++.++++.+++....  ..|.
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~   98 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV   98 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence            4445555432 4577899999998777766789999999765 3333333 34568899999999865555432  2477


Q ss_pred             EEEcCCceeeee--ccc--ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc-----ce--eeeccccceEEEEEEc
Q psy17243         94 VWVADNAQLLYS--ALG--PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD-----ER--FTVSHSEEITCFTVTW  162 (392)
Q Consensus        94 iwd~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-----~~--~~~~~~~~v~~~~~~~  162 (392)
                      .+|..+++....  ...  ....++..+++..+++-..++.|.++|.........     ..  .....-...+.+  ++
T Consensus        99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~  176 (306)
T 2p4o_A           99 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR  176 (306)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred             EEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence            777777764321  111  123444445554444444688899988753210000     00  000111234455  78


Q ss_pred             CCCEEEEee-CCCcEEEEEcCC-CeE--EEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee--eeccc
Q psy17243        163 DSQYLITGS-RDMSLKVWQVVG-GKL--AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH--FLAGH  236 (392)
Q Consensus       163 ~~~~l~~~~-~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~  236 (392)
                      +++.|+.+. ..+.|..|++.. ++.  ...+.. ......+++. ++++++++....+.|.++|.. ++...  .+...
T Consensus       177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd-~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~  253 (306)
T 2p4o_A          177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFD-VEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG  253 (306)
T ss_dssp             ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEB-TTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEEC-CCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc
Confidence            887666554 567899999864 321  122211 1345678888 567787777778899999975 65532  33333


Q ss_pred             ccceeEEEEc---CCCe-EEEEcC
Q psy17243        237 LGCVTCVKLA---GDGT-VAMSDL  256 (392)
Q Consensus       237 ~~~v~~~~~~---~dg~-~~~~~~  256 (392)
                      ....++++|.   +|+. +.++..
T Consensus       254 ~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          254 VIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             cCCceEEEEecccCCCCEEEEECC
Confidence            3568899998   7855 444443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.93  E-value=4.9e-06  Score=72.88  Aligned_cols=234  Identities=11%  Similarity=0.003  Sum_probs=146.3

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEE
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV   83 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   83 (392)
                      ...|+..++...+....+. .......++|.+.+. ++++-...+.|..++++.......+.........+++.+.+..|
T Consensus        95 ~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  173 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  173 (386)
T ss_dssp             BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred             CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence            3457777776555444443 334578999997554 44455567889999988765444443333445778888765555


Q ss_pred             EE-EeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecC-C-CcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         84 VT-SDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDG-D-NSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        84 ~~-~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-d-~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      +. -...+.|.+.+++.......   .......+++.|.+..|+.... . +.|..+++...   .........-.....
T Consensus       174 Y~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---~~~~~~~~~~~~PnG  250 (386)
T 3v65_B          174 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS---GRRIIADTHLFWPNG  250 (386)
T ss_dssp             EEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---SCEEEECSSCSCEEE
T ss_pred             EEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC---CcEEEEECCCCCeee
Confidence            44 45567888888875432221   1235678999987776666544 3 67888887632   222222223345789


Q ss_pred             EEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccc
Q psy17243        158 FTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH  236 (392)
Q Consensus       158 ~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  236 (392)
                      ++++|++..|+.+. ..+.|..+|+........+.........+++.  .+.++++-...+.|..++..+++.+..+...
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~  328 (386)
T 3v65_B          251 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEIIRNK  328 (386)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEECS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEEEECCCCcceEEEccC
Confidence            99998766666554 46789999986543333333334456677774  4567777778889999997777776666543


Q ss_pred             ccceeEEE
Q psy17243        237 LGCVTCVK  244 (392)
Q Consensus       237 ~~~v~~~~  244 (392)
                      ......++
T Consensus       329 ~~~p~gi~  336 (386)
T 3v65_B          329 LHFPMDIH  336 (386)
T ss_dssp             CSCCCCEE
T ss_pred             CCCCceEE
Confidence            33333343

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.93  E-value=1.4e-05  Score=67.92  Aligned_cols=223  Identities=14%  Similarity=0.053  Sum_probs=142.0

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeE-EEEeCCCeEEEEeCCC----CceeEEecccccceEEEEEecC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLTL----GSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      ...|+..|+.+.+....+. .......++|++.+..| ++-...+.|..++++.    ......+...-.....+++.+.
T Consensus         9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            4578999998776655554 34567899999865544 4555668999999876    2222223222234578899875


Q ss_pred             CCEEE-EEeCCCeEEEEEcCCceee--ee-cccceeEEEEeCCCCEEEEecCC--CcEEEEeCCCCCCCCcceeeecccc
Q psy17243         80 SRRVV-TSDKAGVIAVWVADNAQLL--YS-ALGPSKCLTVTHNMKYIVSGDGD--NSLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        80 ~~~l~-~~~~d~~i~iwd~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      +..|+ +-...+.|.+.++......  .. .......++++|.+..|+.+...  +.|..+++...   .........-.
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---~~~~~~~~~~~  164 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTENIQ  164 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECSSCS
T ss_pred             CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---CeEEEEECCCC
Confidence            55554 4456789999998765332  21 22356789999876666655543  68888887532   11111112335


Q ss_pred             ceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEE-ec--CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        154 EITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVL-VG--HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      ....+++++++..|+.+. ..+.|..+|+.... .+.+ ..  .......+++.  .+.++++-...+.|..++..+++.
T Consensus       165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             CceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCCcc
Confidence            678999998877766655 46789999986432 2333 21  22345677775  467777777788999999888876


Q ss_pred             eeeec
Q psy17243        230 EHFLA  234 (392)
Q Consensus       230 ~~~~~  234 (392)
                      +..+.
T Consensus       242 ~~~i~  246 (316)
T 1ijq_A          242 VNLLA  246 (316)
T ss_dssp             CEEEE
T ss_pred             eEEEe
Confidence            66554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.92  E-value=1.2e-05  Score=69.29  Aligned_cols=224  Identities=12%  Similarity=0.038  Sum_probs=141.1

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEE-EEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEE
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAV-SGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVV   84 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   84 (392)
                      ..|+..++...+....+. .......++|++....|+ +-...+.|..++++.......+.........+++.+.+..|+
T Consensus        53 ~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly  131 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY  131 (349)
T ss_dssp             SCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEE
T ss_pred             cceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEE
Confidence            456666665544333333 334578999997555444 545678899999887654443333334457889987655554


Q ss_pred             -EEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEec-CC-CcEEEEeCCCCCCCCcceeeeccccceEEE
Q psy17243         85 -TSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGD-GD-NSLRIWPTSPQTHKDDERFTVSHSEEITCF  158 (392)
Q Consensus        85 -~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-~d-~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~  158 (392)
                       +-...+.|.+.+++.......   .......++++|.+..|+... .. +.|..+++.....   .......-.....+
T Consensus       132 ~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~~~~~~~~PnGl  208 (349)
T 3v64_C          132 WTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RIIADTHLFWPNGL  208 (349)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EESCCSSCSCEEEE
T ss_pred             EEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc---EEEEECCCCCcceE
Confidence             445568899999876533221   123567899998666655554 34 7888888763221   11111233457899


Q ss_pred             EEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        159 TVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       159 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      +++|++..|+.+. ..+.|..+|+........+.........+++.  .+.++++-...+.|..++..+++.+..+..
T Consensus       209 a~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  284 (349)
T 3v64_C          209 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEIIRN  284 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence            9998776666654 46789999986543333333334456677774  466777777788999998777776666543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.90  E-value=1.8e-05  Score=69.66  Aligned_cols=234  Identities=14%  Similarity=0.033  Sum_probs=146.5

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEE-EEeCCCeEEEEeCCCC----ceeEEecccccceEEEEEecC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAV-SGSEDNTAKVWGLTLG----SVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      ...|+..++........+. ....+..++|++....|+ +-...+.|..++++..    .....+.........+++.+.
T Consensus        91 ~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~  169 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  169 (400)
T ss_dssp             TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT
T ss_pred             cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec
Confidence            3567777776554444333 456788999998655454 4455688999988652    223333333456788999885


Q ss_pred             CCEEE-EEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecC--CCcEEEEeCCCCCCCCcceeeecccc
Q psy17243         80 SRRVV-TSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDG--DNSLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        80 ~~~l~-~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      +..|+ +-...+.|.+.+++.......   .......+++.|.+..|+....  .+.|...++...   .........-.
T Consensus       170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~---~~~~~~~~~l~  246 (400)
T 3p5b_L          170 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTENIQ  246 (400)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC---SCEEEECSSCS
T ss_pred             CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC---ccEEEEECCCC
Confidence            55554 445678899999876643222   2234678999997776666553  478888888632   22222222335


Q ss_pred             ceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEec--CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        154 EITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVG--HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      ....|++++++..|+.+. ..+.|..+|+...........  .-.....+++.  .+.++++-...+.|..+|..+++.+
T Consensus       247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCce
Confidence            678999998877777665 467899999865433333322  12344566664  5667777777889999998888877


Q ss_pred             eeecccccceeEEE
Q psy17243        231 HFLAGHLGCVTCVK  244 (392)
Q Consensus       231 ~~~~~~~~~v~~~~  244 (392)
                      ..+.........+.
T Consensus       325 ~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          325 NLLAENLLSPEDMV  338 (400)
T ss_dssp             EEEECSCSCEEEEE
T ss_pred             EEEecCCCCCceEE
Confidence            76654333344443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.88  E-value=8.1e-06  Score=78.86  Aligned_cols=246  Identities=11%  Similarity=0.084  Sum_probs=155.7

Q ss_pred             ccCCeEEEEECCCccceeeecc-------CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc-------cc
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEG-------HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS-------HQ   68 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~   68 (392)
                      +.++-+.+||..+++.......       ....|.++...++|.+ ..|+.+ -|.+||..+++.......       ..
T Consensus       232 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~  309 (795)
T 4a2l_A          232 TEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQ  309 (795)
T ss_dssp             EBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSS
T ss_pred             ECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCC
Confidence            3344578888776544322211       2356999999888874 445555 488999877654433211       23


Q ss_pred             cceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee---------cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCC
Q psy17243         69 STILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS---------ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ  139 (392)
Q Consensus        69 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  139 (392)
                      ..|.++...++|. |..|+.++-|..++..+......         ....+.++...++++ |.+|+.++-|..|+..+.
T Consensus       310 ~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~  387 (795)
T 4a2l_A          310 RSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQ  387 (795)
T ss_dssp             SCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTC
T ss_pred             CcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCC
Confidence            5699999988876 55677777788898766543211         122467777777765 666777878999987643


Q ss_pred             CCCCcceee-----eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe----cCCCceeEEEEecCCCcEE
Q psy17243        140 THKDDERFT-----VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV----GHTDHVSCVAVAVTNKSLV  210 (392)
Q Consensus       140 ~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l  210 (392)
                      .........     .-....|.++...++++.|..|+.++-|..||..+++......    .....|.++... .++.+.
T Consensus       388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~lw  466 (795)
T 4a2l_A          388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPD-GEGNLW  466 (795)
T ss_dssp             CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEEC-SSSCEE
T ss_pred             cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEEC-CCCCEE
Confidence            221110000     0123578899888888767778877789999988776443221    124568888877 455555


Q ss_pred             EEecCCCeEEEEECCCCceeeeecc------cccceeEEEEcCCCeEEEEc
Q psy17243        211 VSGSKDSNLIVWDMETGGEEHFLAG------HLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       211 ~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~dg~~~~~~  255 (392)
                      +.. . +-|.+||..+++.......      ....|.++...++|.+.+..
T Consensus       467 igt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  515 (795)
T 4a2l_A          467 LGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG  515 (795)
T ss_dssp             EEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred             EEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe
Confidence            544 4 4588999887654332211      23578899999988877654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.85  E-value=2.5e-07  Score=74.65  Aligned_cols=164  Identities=10%  Similarity=-0.040  Sum_probs=112.5

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeE--EEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSC--VAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~--~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~   79 (392)
                      .+.+|.|+++|+++++.+..+ - ......  +++..+ ++.+..-.++.+.+||.++.+.+.++..... -..++  ++
T Consensus        71 tG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~D  144 (268)
T 3nok_A           71 TGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YW  144 (268)
T ss_dssp             ETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EE
T ss_pred             cCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cC
Confidence            466788999999999999887 2 233444  444433 3333445689999999999999999885322 23333  57


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeeeccc--------ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee---
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYSALG--------PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT---  148 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---  148 (392)
                      ++.|+.+..++.|.++|..+.+.+....-        ..+.+.+. ++...+....+..|.+.|..+++....+...   
T Consensus       145 g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~  223 (268)
T 3nok_A          145 NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALT  223 (268)
T ss_dssp             TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHH
T ss_pred             CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCc
Confidence            88888888899999999999988765543        22445555 6665555556889999999876544333321   


Q ss_pred             -------eccccceEEEEEEcCCCEEEEeeC
Q psy17243        149 -------VSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus       149 -------~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                             .....-.+.|+++|+++.|++.+.
T Consensus       224 ~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          224 RAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             HHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             ccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence                   012246789999998766665553

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.83  E-value=7.9e-06  Score=66.33  Aligned_cols=191  Identities=10%  Similarity=0.116  Sum_probs=132.0

Q ss_pred             EecccccceEEEEEecCCCEEE-EEeCCCeEEEEEcCCceeeeecc----cceeEEEEeCCCCEEEEecCCCcEEEEeCC
Q psy17243         63 TFKSHQSTILAVAVLSDSRRVV-TSDKAGVIAVWVADNAQLLYSAL----GPSKCLTVTHNMKYIVSGDGDNSLRIWPTS  137 (392)
Q Consensus        63 ~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~  137 (392)
                      .+.+-...+..++|.|++..|+ +...++.|...|.. ++.+....    .....+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4455556799999999876555 57778899999998 77766553    356788888888877776677889999886


Q ss_pred             CCCCCCcce-e-----eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcC---CCeEEEEEe-------cCCCceeEEE
Q psy17243        138 PQTHKDDER-F-----TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV---GGKLAQVLV-------GHTDHVSCVA  201 (392)
Q Consensus       138 ~~~~~~~~~-~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~-------~~~~~v~~~~  201 (392)
                      ......... .     ....+.....++++|.++.|+++.+.....+|.+.   ....+..+.       .+...+..++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            543211111 1     01234557899999999888888776655666554   111222221       1234578999


Q ss_pred             EecCCCcEEEEecCCCeEEEEECCCCceeeeecccc---------cceeEEEEcCCCeEEEEc
Q psy17243        202 VAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL---------GCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       202 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~dg~~~~~~  255 (392)
                      ++|..+.+++.....+.|.++|.. ++.+..+.-..         ..--.|+|.++|++.++.
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence            999999999999999999999976 55555443221         255789999999987774

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.82  E-value=2.2e-05  Score=75.84  Aligned_cols=244  Identities=15%  Similarity=0.123  Sum_probs=153.6

Q ss_pred             CccCCeEEEEECCCccceeeec------cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc--------c
Q psy17243          2 GGMDCLVNVWQMNSHELQSTME------GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS--------H   67 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------~   67 (392)
                      |+.++-|..|+..+.+......      -....|.++...+++. |..|+.++-|..|+..+++.......        .
T Consensus       326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~  404 (795)
T 4a2l_A          326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIG  404 (795)
T ss_dssp             EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred             EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence            3445667777765543221111      0245699999988876 56677777799999887654432211        2


Q ss_pred             ccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeec-------ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCC
Q psy17243         68 QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-------LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT  140 (392)
Q Consensus        68 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  140 (392)
                      ...|.++...++++.|.+|+.++-|..+|..+++...-.       ...+.++...+++...+ |+. +.+.+||..+..
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~  482 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRS  482 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTE
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCe
Confidence            357899999888876777888778999999887654321       23567788777776544 444 458889876432


Q ss_pred             CCCccee---eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe-------cCCCceeEEEEecCCCcEE
Q psy17243        141 HKDDERF---TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV-------GHTDHVSCVAVAVTNKSLV  210 (392)
Q Consensus       141 ~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l  210 (392)
                      .......   .......|.++...+++++.+ |+. +-|..||..+++.  .+.       .....|.++... .++.+.
T Consensus       483 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d-~~g~lW  557 (795)
T 4a2l_A          483 FTTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEA-SNGIIW  557 (795)
T ss_dssp             EEECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEEC-TTSCEE
T ss_pred             EEEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEEC-CCCCEE
Confidence            2111100   011235688888888886554 444 4589999887765  332       123468888877 556655


Q ss_pred             EEecCCCeEEEEECCCCceeeeec--c-cccceeEEEEcCCCeEEEEc
Q psy17243        211 VSGSKDSNLIVWDMETGGEEHFLA--G-HLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       211 ~~~~~dg~i~iwd~~~~~~~~~~~--~-~~~~v~~~~~~~dg~~~~~~  255 (392)
                      ++. .+ -|..||..+++....-.  + ....|.++...++|.+-+..
T Consensus       558 igT-~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          558 VGT-RE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             EEE-SS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred             EEe-CC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence            543 34 58889987665432111  1 13468889999999887775

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.80  E-value=6.9e-06  Score=65.70  Aligned_cols=187  Identities=10%  Similarity=0.071  Sum_probs=123.2

Q ss_pred             ceeEEeccccc--ceEEEEEecCCCEEEEEeCC--CeEEEEEcCCceeeeeccc--ceeEEEEeCCCCEEE-EecCCCcE
Q psy17243         59 SVVSTFKSHQS--TILAVAVLSDSRRVVTSDKA--GVIAVWVADNAQLLYSALG--PSKCLTVTHNMKYIV-SGDGDNSL  131 (392)
Q Consensus        59 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~~d~~i  131 (392)
                      +.+.++. |+.  ....+.|++ +..+.+.+.+  ..|+.+|+.+++.+.....  ......+...++.|+ ..-.++.+
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence            3455664 543  467899986 5555566665  4899999999999876643  222222223344444 44568999


Q ss_pred             EEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCC-----CceeEEEEecCC
Q psy17243        132 RIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT-----DHVSCVAVAVTN  206 (392)
Q Consensus       132 ~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~  206 (392)
                      .+||..+.+.......  .  ..  ...+.+++..|+++..++.|.++|..+.+.+..+.-..     ..++.+.+.  +
T Consensus        88 ~v~D~~tl~~~~ti~~--~--~~--Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~  159 (243)
T 3mbr_X           88 FVYDLATLTPRARFRY--P--GE--GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--N  159 (243)
T ss_dssp             EEEETTTTEEEEEEEC--S--SC--CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--T
T ss_pred             EEEECCcCcEEEEEeC--C--CC--ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--C
Confidence            9999975443333222  1  11  23344677777777778999999999998887775422     245566765  5


Q ss_pred             CcEEEEecCCCeEEEEECCCCceeeeeccc-------------ccceeEEEEcCCCe-EEEEc
Q psy17243        207 KSLVVSGSKDSNLIVWDMETGGEEHFLAGH-------------LGCVTCVKLAGDGT-VAMSD  255 (392)
Q Consensus       207 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~~~dg~-~~~~~  255 (392)
                      +.+++..-.+..|.+.|..+++.+..+...             ....+.++++|++. +++++
T Consensus       160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            666666667889999999999988776522             13568999999654 55554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.80  E-value=1.9e-05  Score=67.00  Aligned_cols=226  Identities=12%  Similarity=0.043  Sum_probs=141.1

Q ss_pred             CCeEEEEECCCccc-eeeeccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCcee-EEecccccceEEEEEecCCC
Q psy17243          5 DCLVNVWQMNSHEL-QSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVV-STFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         5 dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~   81 (392)
                      ...|+..++..... ...+........+++|.+. +.++++-...+.|..++++.+... ..+...-.....+++.+.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            45788888876531 1112122345678999985 445555556788999998766322 12222223466788887555


Q ss_pred             EEE-EEeCCCeEEEEEcCCcee--ee-ecccceeEEEEeCCCCEEEEecC--CCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         82 RVV-TSDKAGVIAVWVADNAQL--LY-SALGPSKCLTVTHNMKYIVSGDG--DNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        82 ~l~-~~~~d~~i~iwd~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      .|+ +-...+.|.+++++....  +. ........+++.|.+..|+....  .+.|..+++....   ........-...
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~l~~P  168 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINSEIYWP  168 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEECCCCCc
Confidence            554 445668899999876432  21 22235678999987666666653  5788888876321   111211223456


Q ss_pred             EEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec
Q psy17243        156 TCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA  234 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  234 (392)
                      ..+++++++..|+.+. ..+.|..+|+..................+++.  .+.++++-...+.|..++..+++....+.
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            8999999776666654 46789999986433322233234456677775  45677777778899999998887766554


Q ss_pred             c
Q psy17243        235 G  235 (392)
Q Consensus       235 ~  235 (392)
                      .
T Consensus       247 ~  247 (318)
T 3sov_A          247 S  247 (318)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.73  E-value=8.7e-05  Score=63.93  Aligned_cols=223  Identities=9%  Similarity=0.042  Sum_probs=139.3

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe-CCCeEEEEEcCCceeee
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD-KAGVIAVWVADNAQLLY  104 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~  104 (392)
                      ....+|.+..++. +|+.+. ...|+..+++.......+. .......++|.+....|+.+. ..+.|..+++.......
T Consensus        33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  109 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  109 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence            3445666666643 444443 3458888887665544444 344578999998776666554 56889999988764322


Q ss_pred             ec---ccceeEEEEeCCCCEE-EEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee-CC-CcEEE
Q psy17243        105 SA---LGPSKCLTVTHNMKYI-VSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS-RD-MSLKV  178 (392)
Q Consensus       105 ~~---~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~i  178 (392)
                      ..   ......+++.+.+..| ++-...+.|.++++....   ..............+++.|.+..|+... .. +.|..
T Consensus       110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r  186 (349)
T 3v64_C          110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA  186 (349)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence            21   2345688998755544 455557889999986322   1222223335678999999766655554 34 77888


Q ss_pred             EEcCCCeEEEEE-ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        179 WQVVGGKLAQVL-VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       179 ~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +++.... ...+ ...-...+.++++|.++.+.++-...+.|..+|+........+.........+++ .++.+.+++.
T Consensus       187 ~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~  263 (349)
T 3v64_C          187 SSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDW  263 (349)
T ss_dssp             EETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEET
T ss_pred             EeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecC
Confidence            8876433 2333 2223456899999777777787777889999998754333333333345567777 3455555554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.73  E-value=5.4e-05  Score=61.43  Aligned_cols=200  Identities=11%  Similarity=0.106  Sum_probs=130.1

Q ss_pred             eeccCCcCeeEEEecCCCCeE-EEEeCCCeEEEEeCCCCceeEEecc-cccceEEEEEecCCCEEEEEeCCCeEEEEEcC
Q psy17243         21 TMEGHLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLTLGSVVSTFKS-HQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD   98 (392)
Q Consensus        21 ~~~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~   98 (392)
                      .+.+-...+..++|+|++..| ++...++.|...|.. ++.+..+.. .......+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            344555679999999976644 456778899999988 888877742 23567888998888766666667889998876


Q ss_pred             Ccee---eeec---------ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeee-------ccccceEEEE
Q psy17243         99 NAQL---LYSA---------LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV-------SHSEEITCFT  159 (392)
Q Consensus        99 ~~~~---~~~~---------~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-------~~~~~v~~~~  159 (392)
                      ....   +...         +.....++++|.++.|+++.......+|.+.............       .....+..++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5432   1111         1123689999999888888776666666554111111111110       1234568899


Q ss_pred             EEcCC-CEEEEeeCCCcEEEEEcCCCeEEEEEecCC---------CceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        160 VTWDS-QYLITGSRDMSLKVWQVVGGKLAQVLVGHT---------DHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       160 ~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      ++|.. .+++.......+.++|.. ++.+..+.-..         .....|+|. +++++.++ ++-+.++.+.-
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d-~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMD-ASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEEC-TTCCEEEE-ETTTEEEEEEC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEEC-CCCCEEEE-cCCceEEEEEe
Confidence            99974 455566667889999965 55555543221         256789999 56665555 55666666653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.72  E-value=2.2e-06  Score=80.74  Aligned_cols=186  Identities=11%  Similarity=0.115  Sum_probs=126.3

Q ss_pred             cCCeEEEEECCCccceeeeccCC-------------------------------cCeeEEEecCCCCeEEEEeCCC----
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHL-------------------------------NTVSCVAISPNSIFAVSGSEDN----   48 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~-------------------------------~~v~~~~~~~~~~~l~~~~~dg----   48 (392)
                      .+|.|..+|..+++++..+....                               .....+++.|+..+++.++.++    
T Consensus       176 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~  255 (668)
T 1kv9_A          176 VRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWN  255 (668)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccc
Confidence            36899999999999988765210                               1112468888878888887766    


Q ss_pred             ---------------eEEEEeCCCCceeEEecc--cc-------cceEEEEEecCCC---EEEEEeCCCeEEEEEcCCce
Q psy17243         49 ---------------TAKVWGLTLGSVVSTFKS--HQ-------STILAVAVLSDSR---RVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        49 ---------------~v~iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~  101 (392)
                                     .|..+|.++|+.+-.++.  |.       .+.....+..+++   .++.++.+|.++++|..+++
T Consensus       256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence                           499999999999877764  22       2333333344665   68889999999999999998


Q ss_pred             eeeeccc---------------ce------------------------eEEEEeCCCCEEEEec----------------
Q psy17243        102 LLYSALG---------------PS------------------------KCLTVTHNMKYIVSGD----------------  126 (392)
Q Consensus       102 ~~~~~~~---------------~~------------------------~~~~~~~~~~~l~~~~----------------  126 (392)
                      .+.....               ++                        ..++++|+...+++..                
T Consensus       336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~  415 (668)
T 1kv9_A          336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT  415 (668)
T ss_dssp             EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred             EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence            8732110               00                        1256777766665421                


Q ss_pred             --------------------CCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE
Q psy17243        127 --------------------GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL  186 (392)
Q Consensus       127 --------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  186 (392)
                                          .+|.|..||+.+++..-..    ....+.....+...+.++++++.|+.++.||.++++.
T Consensus       416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~----~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV----PYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE----EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEc----cCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence                                2377888998755432211    1222333334455688999999999999999999999


Q ss_pred             EEEEecC
Q psy17243        187 AQVLVGH  193 (392)
Q Consensus       187 ~~~~~~~  193 (392)
                      +..+...
T Consensus       492 l~~~~~~  498 (668)
T 1kv9_A          492 LWQFEAQ  498 (668)
T ss_dssp             EEEEECS
T ss_pred             heEecCC
Confidence            9888654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.72  E-value=9.1e-07  Score=83.41  Aligned_cols=250  Identities=11%  Similarity=-0.003  Sum_probs=140.9

Q ss_pred             eEEEEECCCcccee--eecc-CCcCeeEEEecCCCCeEEEEeC-CCeEEEEeCCCCceeEEecccccc-eEEEEEecCCC
Q psy17243          7 LVNVWQMNSHELQS--TMEG-HLNTVSCVAISPNSIFAVSGSE-DNTAKVWGLTLGSVVSTFKSHQST-ILAVAVLSDSR   81 (392)
Q Consensus         7 ~i~vwd~~~~~~~~--~~~~-h~~~v~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~   81 (392)
                      .+.+||..+++...  .+.. +.....++++..++++++.|+. +..+.+||..+.+-...-..+... -.+++..++++
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~  299 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR  299 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence            57888887765332  2221 3333446788889999999884 468999998877544322212221 23456667899


Q ss_pred             EEEEEe-CC-----CeEEEEEcCCceeeeec-------ccceeEEEEeCCCCEEEEecCCC---------cEEEEeCCCC
Q psy17243         82 RVVTSD-KA-----GVIAVWVADNAQLLYSA-------LGPSKCLTVTHNMKYIVSGDGDN---------SLRIWPTSPQ  139 (392)
Q Consensus        82 ~l~~~~-~d-----~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~d~---------~i~~~d~~~~  139 (392)
                      .++.|+ .+     ..+.+||..+.+-....       ........+..++..++.++.+|         .+..||....
T Consensus       300 iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~  379 (656)
T 1k3i_A          300 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS  379 (656)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred             EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCc
Confidence            999888 34     56999999887543321       00101112224455555554443         5677887644


Q ss_pred             CCCCcceeeec------cccceEEEEEEc-CCCEEEEeeCCC-----------cEEEEEcCCCeEEEEE--ecCCCce-e
Q psy17243        140 THKDDERFTVS------HSEEITCFTVTW-DSQYLITGSRDM-----------SLKVWQVVGGKLAQVL--VGHTDHV-S  198 (392)
Q Consensus       140 ~~~~~~~~~~~------~~~~v~~~~~~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~--~~~~~~v-~  198 (392)
                      ...........      ....-.++.|.. ++++++.|+.++           .|.+||..+.+.....  ....... .
T Consensus       380 ~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~  459 (656)
T 1k3i_A          380 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH  459 (656)
T ss_dssp             CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC
T ss_pred             ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccC
Confidence            32211111100      011223444443 677788877532           6888888776654432  2222232 2


Q ss_pred             EEEEecCCCcEEEEecCC-----------CeEEEEECCCCceee--eecccccceeEEEEcCCCeEEEEcCC
Q psy17243        199 CVAVAVTNKSLVVSGSKD-----------SNLIVWDMETGGEEH--FLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       199 ~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      +.+.. +++.+++.|+.+           ..+.+||..+.+-..  .+...........+.+||++++.+..
T Consensus       460 ~~~~l-~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          460 TSVVL-PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEEEC-TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CeEEC-CCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            33444 578888888754           468999987755322  12111122234556799999999874

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.72  E-value=4.2e-06  Score=77.22  Aligned_cols=182  Identities=10%  Similarity=0.044  Sum_probs=113.0

Q ss_pred             CCeEEEEEC-CCccceeeeccCCc-Ce----------eEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccc--c-
Q psy17243          5 DCLVNVWQM-NSHELQSTMEGHLN-TV----------SCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQ--S-   69 (392)
Q Consensus         5 dg~i~vwd~-~~~~~~~~~~~h~~-~v----------~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~-   69 (392)
                      ++.|.-+|. .+++.+.++..... .+          ..+..  .+..++.++.|+.|..+|.++|+.+-+.....  . 
T Consensus        72 ~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~  149 (571)
T 2ad6_A           72 PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG  149 (571)
T ss_dssp             TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT
T ss_pred             CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCcc
Confidence            688999999 89998877653221 00          11222  34567888889999999999999887654321  0 


Q ss_pred             -ceEE-EEEecCCCEEEEEeC------CCeEEEEEcCCceeeeeccc--ce-----------------------------
Q psy17243         70 -TILA-VAVLSDSRRVVTSDK------AGVIAVWVADNAQLLYSALG--PS-----------------------------  110 (392)
Q Consensus        70 -~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~--~~-----------------------------  110 (392)
                       .+.+ .... ++ .+++++.      ++.|..+|..+++.+.....  +.                             
T Consensus       150 ~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~  227 (571)
T 2ad6_A          150 STLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGD  227 (571)
T ss_dssp             CBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTT
T ss_pred             ceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCccc
Confidence             1211 1111 33 5666654      78999999999988765432  11                             


Q ss_pred             ----------eEEEEeCCCCEEEEecCC----------------CcEEEEeCCCCCCCCcceeee-------ccccceEE
Q psy17243        111 ----------KCLTVTHNMKYIVSGDGD----------------NSLRIWPTSPQTHKDDERFTV-------SHSEEITC  157 (392)
Q Consensus       111 ----------~~~~~~~~~~~l~~~~~d----------------~~i~~~d~~~~~~~~~~~~~~-------~~~~~v~~  157 (392)
                                ..+++.++...++.+..+                +.|..+|..+++..-......       ....++ -
T Consensus       228 ~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l  306 (571)
T 2ad6_A          228 AWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-L  306 (571)
T ss_dssp             GGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-E
T ss_pred             ceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-E
Confidence                      124566766777776642                258888887654332111110       011222 2


Q ss_pred             EEEEcCCC---EEEEeeCCCcEEEEEcCCCeEEEEEe
Q psy17243        158 FTVTWDSQ---YLITGSRDMSLKVWQVVGGKLAQVLV  191 (392)
Q Consensus       158 ~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~  191 (392)
                      +....+++   .++.++.+|.++++|..+++.+..+.
T Consensus       307 ~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          307 TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence            23334674   57788889999999999999887654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.71  E-value=0.0001  Score=64.44  Aligned_cols=221  Identities=9%  Similarity=0.023  Sum_probs=137.4

Q ss_pred             eeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe-CCCeEEEEEcCCceeeeec-
Q psy17243         29 VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD-KAGVIAVWVADNAQLLYSA-  106 (392)
Q Consensus        29 v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~-  106 (392)
                      -.|.+..+. .+|+.+. ...|+..++........+. .......++|.+.+..|+.+. ..+.|..+++......... 
T Consensus        79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             SCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             CeECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            345554453 3444443 4568888887665544444 344578999998766666554 5678999998876432222 


Q ss_pred             --ccceeEEEEeCCCCEE-EEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-C-CcEEEEEc
Q psy17243        107 --LGPSKCLTVTHNMKYI-VSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-D-MSLKVWQV  181 (392)
Q Consensus       107 --~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~  181 (392)
                        ......+++.+.+..| ++-...+.|.++++....   ..............+++.|.+..|+.... . +.|..+++
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~---~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence              2244678888755554 444557788888876322   12222233356789999987766665543 3 67888887


Q ss_pred             CCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ............-...+.++++|.++.+.++-...+.|..+|+........+.........+++ .++.+.+++.
T Consensus       233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~  306 (386)
T 3v65_B          233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDW  306 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEET
T ss_pred             CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeC
Confidence            6443333333333457899999777888888778889999998754333333333345567777 3455555543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=4.5e-05  Score=73.51  Aligned_cols=243  Identities=9%  Similarity=0.056  Sum_probs=147.0

Q ss_pred             eEEEEECCCccceeeecc-------CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec--------------
Q psy17243          7 LVNVWQMNSHELQSTMEG-------HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK--------------   65 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--------------   65 (392)
                      -+.+||..+++.......       ....|.++...+++. |..|+..+-|.++|..+++......              
T Consensus       231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  309 (781)
T 3v9f_A          231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS  309 (781)
T ss_dssp             EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred             cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence            577788766543322111       245699999888876 5556664568889987665322111              


Q ss_pred             ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee------------cccceeEEEEeCCCCEEEEecCCCcEEE
Q psy17243         66 SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS------------ALGPSKCLTVTHNMKYIVSGDGDNSLRI  133 (392)
Q Consensus        66 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~d~~i~~  133 (392)
                      .....|.++...+++. |..|+.++-|..++..+......            ....+.++...+++. |.+|+.++-|..
T Consensus       310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~  387 (781)
T 3v9f_A          310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINV  387 (781)
T ss_dssp             BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEE
T ss_pred             CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEE
Confidence            1245689999888775 56677677788888876543221            113466777777665 566776677888


Q ss_pred             EeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe--cCCCceeEEEEecCCCcEEE
Q psy17243        134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV--GHTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~  211 (392)
                      |+..+................|.++...++++ |..|+.++-|..+|..+++......  .....|.++... .++.+.+
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d-~~g~lwi  465 (781)
T 3v9f_A          388 FENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED-KNKKIWI  465 (781)
T ss_dssp             EETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC-TTSEEEE
T ss_pred             EECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC-CCCCEEE
Confidence            88753211111000012345688888776665 5557766779999987775433221  124568888776 4555444


Q ss_pred             EecCCCeEEEEECCCCceeeeeccc-----ccceeEEEEcCCCeEEEEcC
Q psy17243        212 SGSKDSNLIVWDMETGGEEHFLAGH-----LGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       212 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~dg~~~~~~~  256 (392)
                       |+. +-|..+|..+++........     ...|.++...++|.+.+...
T Consensus       466 -gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~  513 (781)
T 3v9f_A          466 -GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF  513 (781)
T ss_dssp             -EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred             -EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc
Confidence             444 56899998876644322211     35788999998888776653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.62  E-value=5.9e-06  Score=79.07  Aligned_cols=193  Identities=13%  Similarity=0.058  Sum_probs=113.5

Q ss_pred             CeeEEEec-CCCCeEEEEeC-C----CeEEEEeCCCC-ceeEEecccccceEEEEEecCCCEEEEEeCC-----CeEEEE
Q psy17243         28 TVSCVAIS-PNSIFAVSGSE-D----NTAKVWGLTLG-SVVSTFKSHQSTILAVAVLSDSRRVVTSDKA-----GVIAVW   95 (392)
Q Consensus        28 ~v~~~~~~-~~~~~l~~~~~-d----g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw   95 (392)
                      .+...+|| |||++||.+.. +    ..|+++|+.++ +.+...  -......+.|+||++.|+....+     ..|+.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            57889999 99998875432 2    35999999998 632210  11123468899999988877654     368888


Q ss_pred             EcCCce----eeeecc--cceeEEEEeCCCCEEEEecC---CCcEEEEeCCCCCCCCc-ceeeeccccceEEEEEEcCCC
Q psy17243         96 VADNAQ----LLYSAL--GPSKCLTVTHNMKYIVSGDG---DNSLRIWPTSPQTHKDD-ERFTVSHSEEITCFTVTWDSQ  165 (392)
Q Consensus        96 d~~~~~----~~~~~~--~~~~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  165 (392)
                      ++.+++    .+....  .....+.++|++++|+....   ...|.++|+........ ............++.|+..+.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~  332 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH  332 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence            887763    222212  23456789999999887653   45688888875421110 112222334445555544333


Q ss_pred             EEEEeeCC----CcEEEEEcCCCeEEEE-EecCCC--ceeEEEEecCCCcEEEEecCCCe--EEEEEC
Q psy17243        166 YLITGSRD----MSLKVWQVVGGKLAQV-LVGHTD--HVSCVAVAVTNKSLVVSGSKDSN--LIVWDM  224 (392)
Q Consensus       166 ~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~  224 (392)
                      +++....+    ..|..+|+.++..... +..+..  .+..+.+  .++.++++...++.  |.++++
T Consensus       333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEec
Confidence            44444333    3677777765222122 233433  3444444  45677777777876  555665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.61  E-value=0.00015  Score=69.18  Aligned_cols=223  Identities=14%  Similarity=0.037  Sum_probs=137.5

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCC----ceeEEecccccceEEEEEecCC
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLG----SVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ..|+..++...+....+. ....+..|+|.+... ++++-...+.|+.+++...    .....+.........|++.+.+
T Consensus       404 ~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~  482 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  482 (791)
T ss_dssp             SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence            345555655444333333 445678999998544 4455556688988888753    2233333234456789998877


Q ss_pred             CEEEEE-eCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEecC--CCcEEEEeCCCCCCCCcceeeeccccc
Q psy17243         81 RRVVTS-DKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGDG--DNSLRIWPTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        81 ~~l~~~-~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~  154 (392)
                      ..|+.+ ...+.|.+.++........   .......|++.|....|+....  .+.|...++...   ....+....-..
T Consensus       483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~~lv~~~l~~  559 (791)
T 3m0c_C          483 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTENIQW  559 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECSSCSC
T ss_pred             CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceEEEEeCCCCC
Confidence            655555 4568899999886543222   2235678999998766666653  267888888632   222222233356


Q ss_pred             eEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEecC--CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee
Q psy17243        155 ITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVGH--TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       155 v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      ...|++.+.+..|+.+. ....|..+++........+...  -.....|++.  .+.++++-...+.|...|..+++.+.
T Consensus       560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~  637 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVN  637 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             ceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceE
Confidence            78999998777776664 4568999998654433333321  2234456664  45677777778889999988887666


Q ss_pred             eec
Q psy17243        232 FLA  234 (392)
Q Consensus       232 ~~~  234 (392)
                      .+.
T Consensus       638 ~l~  640 (791)
T 3m0c_C          638 LLA  640 (791)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.61  E-value=1.8e-05  Score=72.99  Aligned_cols=182  Identities=11%  Similarity=0.071  Sum_probs=116.3

Q ss_pred             CCeEEEEEC-CCccceeeeccCCcC-----------eeEEEecCCCCe----EEEEeCCCeEEEEeCCCCceeEEecccc
Q psy17243          5 DCLVNVWQM-NSHELQSTMEGHLNT-----------VSCVAISPNSIF----AVSGSEDNTAKVWGLTLGSVVSTFKSHQ   68 (392)
Q Consensus         5 dg~i~vwd~-~~~~~~~~~~~h~~~-----------v~~~~~~~~~~~----l~~~~~dg~v~iwd~~~~~~~~~~~~~~   68 (392)
                      ++.|.-+|. .+++.+.++......           ...++++|.+..    |+.++.|+.|..+|.++|+.+-+.....
T Consensus        72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~  151 (599)
T 1w6s_A           72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSD  151 (599)
T ss_dssp             TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCC
Confidence            688999999 899988777532210           123455443334    7888899999999999999886654322


Q ss_pred             c----ceEE-EEEecCCCEEEEEe------CCCeEEEEEcCCceeeeecccc--e-------------------------
Q psy17243         69 S----TILA-VAVLSDSRRVVTSD------KAGVIAVWVADNAQLLYSALGP--S-------------------------  110 (392)
Q Consensus        69 ~----~v~~-~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~--~-------------------------  110 (392)
                      .    .+.+ ... .++ .+++++      .++.|+.+|.++++.+......  .                         
T Consensus       152 ~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~t  229 (599)
T 1w6s_A          152 IKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGT  229 (599)
T ss_dssp             GGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHT
T ss_pred             CCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccccccccccc
Confidence            0    1221 111 134 555554      3799999999999887654321  1                         


Q ss_pred             --------------eEEEEeCCCCEEEEecCCC----------------cEEEEeCCCCCCCCcceeeeccc--------
Q psy17243        111 --------------KCLTVTHNMKYIVSGDGDN----------------SLRIWPTSPQTHKDDERFTVSHS--------  152 (392)
Q Consensus       111 --------------~~~~~~~~~~~l~~~~~d~----------------~i~~~d~~~~~~~~~~~~~~~~~--------  152 (392)
                                    ..+++.+....++.+..++                .|..+|.++++..-.  +...+.        
T Consensus       230 w~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~--~q~~~~d~wd~d~~  307 (599)
T 1w6s_A          230 WEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG--YQKTPHDEWDYAGV  307 (599)
T ss_dssp             SSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE--EESSTTCSSCCCCC
T ss_pred             CCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE--eecCCCccccccCC
Confidence                          1345667777888877653                788888876544321  111111        


Q ss_pred             -cceEEEEEE-cCC---CEEEEeeCCCcEEEEEcCCCeEEEEEe
Q psy17243        153 -EEITCFTVT-WDS---QYLITGSRDMSLKVWQVVGGKLAQVLV  191 (392)
Q Consensus       153 -~~v~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~  191 (392)
                       .++. +... .++   ..++.++.+|.++++|.++++.+....
T Consensus       308 ~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          308 NVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             CCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence             1221 2222 456   467778899999999999999886654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.60  E-value=5.2e-05  Score=67.34  Aligned_cols=224  Identities=8%  Similarity=0.041  Sum_probs=133.1

Q ss_pred             CeeEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC-C----eEEEEEcCCce
Q psy17243         28 TVSCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA-G----VIAVWVADNAQ  101 (392)
Q Consensus        28 ~v~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~----~i~iwd~~~~~  101 (392)
                      ....|+++| ++..|+.+...+.|+.+|++.+....... .......++|+++++.|+++... +    .+...+.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            457899998 45566666555889999988766544433 45567899999999977766642 1    23334432211


Q ss_pred             e---eeecccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEe-eCCCcE
Q psy17243        102 L---LYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITG-SRDMSL  176 (392)
Q Consensus       102 ~---~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i  176 (392)
                      .   ..........++++| ++.++++-..++.|..++.......  .............++|+|++++|+.. ...+.|
T Consensus       217 ~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          217 KVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            1   111123456788999 6666666667889999998633211  11111222456789999999955554 457889


Q ss_pred             EEEEcCC--CeE--EEEEecC---------------CCcee-EEEEec-------CCCcEEEEecCCCeEEEEECCCCce
Q psy17243        177 KVWQVVG--GKL--AQVLVGH---------------TDHVS-CVAVAV-------TNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       177 ~i~d~~~--~~~--~~~~~~~---------------~~~v~-~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      ..++...  ++.  ...+.+.               -.... .++..+       .++.++++-..++.|+.++ .+++.
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v  373 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV  373 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence            9987653  221  1222211               01122 344431       2355666666677888888 34543


Q ss_pred             eeeeccc------------------ccceeEEEEcC-CCeEEEEcC
Q psy17243        230 EHFLAGH------------------LGCVTCVKLAG-DGTVAMSDL  256 (392)
Q Consensus       230 ~~~~~~~------------------~~~v~~~~~~~-dg~~~~~~~  256 (392)
                      .. +.+.                  -..-..+++.+ +|.+++.+.
T Consensus       374 ~~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~  418 (430)
T 3tc9_A          374 TT-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDR  418 (430)
T ss_dssp             EE-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred             EE-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEEC
Confidence            32 2211                  11467899998 578877764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.60  E-value=6.9e-05  Score=63.18  Aligned_cols=193  Identities=12%  Similarity=0.186  Sum_probs=123.8

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecC----CC---EEEEEeC---CCeEEEEEcC--Cceeeee
Q psy17243         38 SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSD----SR---RVVTSDK---AGVIAVWVAD--NAQLLYS  105 (392)
Q Consensus        38 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---d~~i~iwd~~--~~~~~~~  105 (392)
                      ..+++.....+-+.+||+ +|+.++.+..  +.++.+..-|+    ++   .+++...   ++.|.+|++.  ++. +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            345666667789999999 8999988863  56777776663    22   2333333   5789999773  333 332


Q ss_pred             cc----------cceeEEEE--eCC-CC-EEEEecCCCcEEEEeCCCCC---CCCcceeeeccccceEEEEEEcCCCEEE
Q psy17243        106 AL----------GPSKCLTV--THN-MK-YIVSGDGDNSLRIWPTSPQT---HKDDERFTVSHSEEITCFTVTWDSQYLI  168 (392)
Q Consensus       106 ~~----------~~~~~~~~--~~~-~~-~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (392)
                      ..          .....+++  ++. +. ++++...+|.+..|++....   ..............+..+...+....|+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            21          23345666  664 43 68888889999999884321   1112222234457888999998888999


Q ss_pred             EeeCCCcEEEEEcC-----CCeEEEEEe-cC-CCceeEEEEec--CCCcEEEEec-CCCeEEEEECC-CCceeeeec
Q psy17243        169 TGSRDMSLKVWQVV-----GGKLAQVLV-GH-TDHVSCVAVAV--TNKSLVVSGS-KDSNLIVWDME-TGGEEHFLA  234 (392)
Q Consensus       169 ~~~~dg~i~i~d~~-----~~~~~~~~~-~~-~~~v~~~~~~~--~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~  234 (392)
                      .+-++..|..|+.+     +++.+..+. ++ ...+..|++-+  ....+|++++ .+.++.+||.. +.+.+..+.
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            99999778888855     345555442 22 24678888742  2222455444 67899999996 566666554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.59  E-value=0.00039  Score=67.03  Aligned_cols=243  Identities=8%  Similarity=0.014  Sum_probs=149.0

Q ss_pred             CccCCeEEEEECCCccceeeec---------cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEe---ccccc
Q psy17243          2 GGMDCLVNVWQMNSHELQSTME---------GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF---KSHQS   69 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~   69 (392)
                      |+.++-|..++..+........         -....|.++...+++. |..|+.++-|..|+..+++.....   .....
T Consensus       329 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~  407 (781)
T 3v9f_A          329 GTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSN  407 (781)
T ss_dssp             EEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCS
T ss_pred             EecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCc
Confidence            3445667777766543322110         0235689999888776 556666666889997654332111   12345


Q ss_pred             ceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeec-----ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc
Q psy17243         70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD  144 (392)
Q Consensus        70 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  144 (392)
                      .|.++...+++. |.+|+.++-+..+|..+++.....     ...+.++...+++. |.+|+. +.|..||..+....  
T Consensus       408 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~--  482 (781)
T 3v9f_A          408 SVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVI--  482 (781)
T ss_dssp             BEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCC--
T ss_pred             ceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEE--
Confidence            788998877775 455777677999998877654322     23567777777765 555555 56888987643221  


Q ss_pred             ceeeec-----cccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec----CCCceeEEEEecCCCcEEEEecC
Q psy17243        145 ERFTVS-----HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG----HTDHVSCVAVAVTNKSLVVSGSK  215 (392)
Q Consensus       145 ~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~  215 (392)
                       .....     ....|.++...+++++ ..|+.++-|..||..+++... +..    ....|.++... .++.+.++. .
T Consensus       483 -~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d-~~g~lWi~T-~  557 (781)
T 3v9f_A          483 -HHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRS-SKGQMWLAT-G  557 (781)
T ss_dssp             -EEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEEC-TTSCEEEEE-T
T ss_pred             -ecccCcccccccceeEEEEEcCCCCE-EEEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEEC-CCCCEEEEE-C
Confidence             11111     1357888888887764 455554458889987665433 321    13467888877 556555544 4


Q ss_pred             CCeEEEEECCCCceeeeecc----cccceeEEEEcCCCeEEEEcC
Q psy17243        216 DSNLIVWDMETGGEEHFLAG----HLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       216 dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +|.|..||..+++.. .+..    ....|.++...++|.+-+...
T Consensus       558 ~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~t~  601 (781)
T 3v9f_A          558 EGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWASTN  601 (781)
T ss_dssp             TEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEECS
T ss_pred             CCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEEcC
Confidence            666588998776533 2221    123678899999998877753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.56  E-value=6.8e-06  Score=78.63  Aligned_cols=156  Identities=12%  Similarity=0.084  Sum_probs=99.1

Q ss_pred             ceEEEEEe-cCCCEEEEEeC-CC----eEEEEEcCCc-eeeee-cccceeEEEEeCCCCEEEEecCC-----CcEEEEeC
Q psy17243         70 TILAVAVL-SDSRRVVTSDK-AG----VIAVWVADNA-QLLYS-ALGPSKCLTVTHNMKYIVSGDGD-----NSLRIWPT  136 (392)
Q Consensus        70 ~v~~~~~~-~~~~~l~~~~~-d~----~i~iwd~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~~d~  136 (392)
                      .+....|+ |||++|+.+.. +|    .|+++|+.++ +.+.. +......+.|+|+++.|+....+     ..|.++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            57889999 99998875543 33    5999999998 64322 22223578899999888877654     25777887


Q ss_pred             CCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC---CCcEEEEEcCCC--eE-EEEE-ecCCCceeEEEEecCCCcE
Q psy17243        137 SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR---DMSLKVWQVVGG--KL-AQVL-VGHTDHVSCVAVAVTNKSL  209 (392)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~--~~-~~~~-~~~~~~v~~~~~~~~~~~~  209 (392)
                      .+...................+.|+||+++|+....   ...|+++|+.++  +. +..+ .........+.|+ .++.+
T Consensus       255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~-~g~~l  333 (751)
T 2xe4_A          255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH-GTSHL  333 (751)
T ss_dssp             TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-TTTEE
T ss_pred             CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-eCCEE
Confidence            644322222222223344567899999998887653   456888998775  22 1333 2334455556555 45666


Q ss_pred             EEEecCC----CeEEEEECCC
Q psy17243        210 VVSGSKD----SNLIVWDMET  226 (392)
Q Consensus       210 l~~~~~d----g~i~iwd~~~  226 (392)
                      ++....+    ..|..+++.+
T Consensus       334 ~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          334 VILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEEECTTTCTTCEEEEEETTS
T ss_pred             EEEeCCCCCCCcEEEEEcCCC
Confidence            6665544    3677778765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.55  E-value=4e-05  Score=70.81  Aligned_cols=161  Identities=12%  Similarity=0.055  Sum_probs=98.0

Q ss_pred             CeEEEEeCCCCceeEEecc--cc--------cceEEEEEe-cCCC---EEEEEeCCCeEEEEEcCCceeeeecccc--e-
Q psy17243         48 NTAKVWGLTLGSVVSTFKS--HQ--------STILAVAVL-SDSR---RVVTSDKAGVIAVWVADNAQLLYSALGP--S-  110 (392)
Q Consensus        48 g~v~iwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~-  110 (392)
                      +.|..+|.++|+.+-.++.  |.        .++. +... .+|+   .++.++.+|.++++|.++++.+......  + 
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            6899999999999877653  22        1222 1221 4664   6788999999999999999876533211  0 


Q ss_pred             ---------------------------------------------eEEEEeCCCCEEEEec-------------------
Q psy17243        111 ---------------------------------------------KCLTVTHNMKYIVSGD-------------------  126 (392)
Q Consensus       111 ---------------------------------------------~~~~~~~~~~~l~~~~-------------------  126 (392)
                                                                   ..++++|+...+++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                                                         1234555555554432                   


Q ss_pred             --------------CCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec
Q psy17243        127 --------------GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG  192 (392)
Q Consensus       127 --------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  192 (392)
                                    .+|.|..||+.+++..-...    ...++..-.+...+.+++.++.|+.++.||.++++.+.+++.
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~----~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHK----EHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEE----ESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEec----CCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence                          25778888887554322111    111222112223467888899999999999999999988875


Q ss_pred             CCCce-eEEEEecCCCcEEEEe
Q psy17243        193 HTDHV-SCVAVAVTNKSLVVSG  213 (392)
Q Consensus       193 ~~~~v-~~~~~~~~~~~~l~~~  213 (392)
                      ..... .-+.+...+..++++.
T Consensus       526 ~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          526 GSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             SSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCcccCceEEEECCEEEEEEE
Confidence            33221 2245542344455443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.54  E-value=0.00029  Score=59.77  Aligned_cols=209  Identities=12%  Similarity=0.084  Sum_probs=129.0

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe-CCCeEEEEEcCC----cee--ee-eccccee
Q psy17243         40 FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD-KAGVIAVWVADN----AQL--LY-SALGPSK  111 (392)
Q Consensus        40 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~----~~~--~~-~~~~~~~  111 (392)
                      +|+.+. ...|+..|++..+....+. .......++|.+.+..|+.+. ..+.|..+++..    ...  +. .......
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            344443 3568899998877655554 345678999998776666554 458999999876    221  11 1113456


Q ss_pred             EEEEeCCCCEE-EEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC--CcEEEEEcCCCeEEE
Q psy17243        112 CLTVTHNMKYI-VSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD--MSLKVWQVVGGKLAQ  188 (392)
Q Consensus       112 ~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~  188 (392)
                      .+++.+.+..| ++-...+.|.++++...   ...............+++.|.+..|+.....  +.|..+++.. +...
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~---~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~  156 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIY  156 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCC---ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeE
Confidence            88898755545 44466789999998632   1112222234567899999976666655543  6888888753 3333


Q ss_pred             EE-ecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee-c--ccccceeEEEEcCCCeEEEEcC
Q psy17243        189 VL-VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL-A--GHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       189 ~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~--~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .+ ...-...+.+++++.++.+.++-...+.|..+|+.... ...+ .  ........+++. .+.+.+++.
T Consensus       157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~  226 (316)
T 1ijq_A          157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDI  226 (316)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEET
T ss_pred             EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEEC
Confidence            33 22334678999997677777777778899999987433 2222 2  122345677775 355555553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.53  E-value=8e-05  Score=62.94  Aligned_cols=204  Identities=11%  Similarity=0.014  Sum_probs=115.7

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC--CeEEEEeCCCCceeEEecc-cccceEEEEEecCCC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED--NTAKVWGLTLGSVVSTFKS-HQSTILAVAVLSDSR   81 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~   81 (392)
                      ++.|..||... +....+. .......+++.++++++++....  ..|..++..+++....... .......++..+++.
T Consensus        52 ~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~  129 (306)
T 2p4o_A           52 VGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ  129 (306)
T ss_dssp             TTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE
T ss_pred             CCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCc
Confidence            45666666543 3222222 23467899999999865554332  2477777777765433221 112234455445444


Q ss_pred             EEEEEeCCCeEEEEEcCCce--eee--------ecc---cceeEEEEeCCCCEEEEec-CCCcEEEEeCCCCCCCCccee
Q psy17243         82 RVVTSDKAGVIAVWVADNAQ--LLY--------SAL---GPSKCLTVTHNMKYIVSGD-GDNSLRIWPTSPQTHKDDERF  147 (392)
Q Consensus        82 ~l~~~~~d~~i~iwd~~~~~--~~~--------~~~---~~~~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~  147 (392)
                      .+++-..++.|+.+|..+++  ...        ...   .....+  +++++.|+++. ..+.|..|++...........
T Consensus       130 ~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~  207 (306)
T 2p4o_A          130 YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEI  207 (306)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEE
T ss_pred             EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEE
Confidence            44444458899999987642  210        000   122344  78887666554 578999999874211111111


Q ss_pred             eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEE--EEecCCCceeEEEEe---cCCCcEEEEec
Q psy17243        148 TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQ--VLVGHTDHVSCVAVA---VTNKSLVVSGS  214 (392)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~---~~~~~~l~~~~  214 (392)
                      . ........+++.++|+++++....+.|.++|.. ++...  .+.......++++|.   |..+.++++..
T Consensus       208 ~-~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          208 F-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             E-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             E-eccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            1 111345668899999887777778899999975 55432  222223567889997   34344444443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.51  E-value=5e-05  Score=67.43  Aligned_cols=216  Identities=10%  Similarity=0.065  Sum_probs=124.3

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC---C-eEEEEeCCCCce-eEEecccccceEEEEEec-C
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED---N-TAKVWGLTLGSV-VSTFKSHQSTILAVAVLS-D   79 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g-~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~-~   79 (392)
                      +.|+.+|..+++..... ........++++++++++++....   . .+...+...+.. ...+. .-.....+++.| +
T Consensus       162 ~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~  239 (433)
T 4hw6_A          162 DAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQN  239 (433)
T ss_dssp             SCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTT
T ss_pred             CCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCC
Confidence            56777777666554433 344568899999999944443311   1 133333222211 01111 223346688898 6


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeee---cc--cceeEEEEeCCCCEEEEe-cCCCcEEEEeCCCCCCC-Ccceeeec--
Q psy17243         80 SRRVVTSDKAGVIAVWVADNAQLLYS---AL--GPSKCLTVTHNMKYIVSG-DGDNSLRIWPTSPQTHK-DDERFTVS--  150 (392)
Q Consensus        80 ~~~l~~~~~d~~i~iwd~~~~~~~~~---~~--~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~-~~~~~~~~--  150 (392)
                      +..+++-..++.|+.+|..++.....   ..  .....++++|+++.|+++ ...+.|+.++....... .......+  
T Consensus       240 G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~  319 (433)
T 4hw6_A          240 GKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH  319 (433)
T ss_dssp             CCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT
T ss_pred             CeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC
Confidence            66555655678899999986655211   11  122369999999966555 45688999886532111 00001101  


Q ss_pred             -------------cccceEEEEE---------EcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCC--------------
Q psy17243        151 -------------HSEEITCFTV---------TWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT--------------  194 (392)
Q Consensus       151 -------------~~~~v~~~~~---------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------  194 (392)
                                   .-.....+++         .++++++++-...+.|+.++. ++... .+.+..              
T Consensus       320 g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~  397 (433)
T 4hw6_A          320 SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRS  397 (433)
T ss_dssp             TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTT
T ss_pred             CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCcccc
Confidence                         1123567888         566666666666788999985 55433 332211              


Q ss_pred             ----CceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        195 ----DHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       195 ----~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                          .....|++.|+++.++++-..++.|+.++++
T Consensus       398 ~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          398 QALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                1256788886677777776667778777654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.49  E-value=0.0004  Score=58.88  Aligned_cols=210  Identities=9%  Similarity=0.018  Sum_probs=127.8

Q ss_pred             eEEEEeCCCeEEEEeCCCCc--eeEEecccccceEEEEEecCCCEEEEE-eCCCeEEEEEcCCcee----eeecccceeE
Q psy17243         40 FAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAVAVLSDSRRVVTS-DKAGVIAVWVADNAQL----LYSALGPSKC  112 (392)
Q Consensus        40 ~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~----~~~~~~~~~~  112 (392)
                      +|+.+. ...|+..+++...  ....+. .......++|.+....|+.+ ...+.|..+++.....    +..-......
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g   83 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG   83 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence            344433 4678999988764  222222 23456789999866666555 4567899999876632    1122234567


Q ss_pred             EEEeCCCC-EEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC--CCcEEEEEcCCCeEEEE
Q psy17243        113 LTVTHNMK-YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR--DMSLKVWQVVGGKLAQV  189 (392)
Q Consensus       113 ~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~  189 (392)
                      +++.+.+. .+++-...+.|.++++....   ..............+++.|.+..|+....  .+.|..+++........
T Consensus        84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~---~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~  160 (318)
T 3sov_A           84 LACDWLGEKLYWTDSETNRIEVSNLDGSL---RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII  160 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             EEEEcCCCeEEEEECCCCEEEEEECCCCc---EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE
Confidence            88887554 44555567889999986321   11222234456789999997666666653  57888888753322222


Q ss_pred             EecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        190 LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       190 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      ....-...+.+++++.++.+.++-...+.|..+|+..................+++..+ .+..++
T Consensus       161 ~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd  225 (318)
T 3sov_A          161 INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTD  225 (318)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEE
T ss_pred             EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEe
Confidence            22223456899999767777777778899999998743332223323344566776533 444443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.48  E-value=0.00015  Score=64.33  Aligned_cols=223  Identities=10%  Similarity=0.012  Sum_probs=133.2

Q ss_pred             CeeEEEecCC--CCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCC-----eEEEEEcCCc
Q psy17243         28 TVSCVAISPN--SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG-----VIAVWVADNA  100 (392)
Q Consensus        28 ~v~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~  100 (392)
                      ....++|+|+  ...|+.+...+.|+.+|..+++...... .......++++++++ |+++...+     .+...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            4568999984  3445555444889999988776654443 445688999999999 55554422     2333333222


Q ss_pred             ee---eeecccceeEEEEeC-CCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee-CCCc
Q psy17243        101 QL---LYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS-RDMS  175 (392)
Q Consensus       101 ~~---~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~  175 (392)
                      ..   ..........+++++ ++.++++-..++.|+.+|...+...... ...........++|+|++++|+.+. ..+.
T Consensus       218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-eccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            11   111123445788899 6665555556788999988633221111 1111222234699999999665554 5678


Q ss_pred             EEEEEcC--CCeE--EEEEecC---------------CCceeEEEE---------ecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        176 LKVWQVV--GGKL--AQVLVGH---------------TDHVSCVAV---------AVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       176 i~i~d~~--~~~~--~~~~~~~---------------~~~v~~~~~---------~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      |+.++..  ++..  ...+.+.               -.....+++         . .++.++++-..++.|+.++. ++
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEECCCCEEEEECC-CC
Confidence            9998865  2321  1122211               123456888         4 66777777777889999985 45


Q ss_pred             ceeeeeccc------------------ccceeEEEEc-CCCeEEEEcC
Q psy17243        228 GEEHFLAGH------------------LGCVTCVKLA-GDGTVAMSDL  256 (392)
Q Consensus       228 ~~~~~~~~~------------------~~~v~~~~~~-~dg~~~~~~~  256 (392)
                      ... .+.+.                  -..-..+++. ++|.+.+.+.
T Consensus       375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~  421 (433)
T 4hw6_A          375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC  421 (433)
T ss_dssp             EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred             CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence            432 32221                  1235688999 7888888864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.48  E-value=0.00055  Score=60.11  Aligned_cols=210  Identities=12%  Similarity=0.093  Sum_probs=130.3

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe-CCCeEEEEEcCCce------eee-eccccee
Q psy17243         40 FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD-KAGVIAVWVADNAQ------LLY-SALGPSK  111 (392)
Q Consensus        40 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~------~~~-~~~~~~~  111 (392)
                      +|+.+. ...|+..+++.......+. ....+..++|++....|+.+. ..+.|+.+++....      .+. .......
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444443 4689999988766554444 456788999998777666664 56789889887521      111 1233567


Q ss_pred             EEEEeCC-CCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC--CCcEEEEEcCCCeEEE
Q psy17243        112 CLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR--DMSLKVWQVVGGKLAQ  188 (392)
Q Consensus       112 ~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~  188 (392)
                      .+++.+. +++.++-...+.|.+.++....   ..............+++.|.+.+|+....  .+.|...++.......
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~---~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~  239 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  239 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCS---EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCc---eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence            8899884 4444555567889999886322   22222233455789999997666666553  3788888876443333


Q ss_pred             EEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc--cccceeEEEEcCCCeEEEEc
Q psy17243        189 VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG--HLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~dg~~~~~~  255 (392)
                      .....-...+.|++++.++.+.++-...+.|..+|+...........  .......+++. .+.+..++
T Consensus       240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd  307 (400)
T 3p5b_L          240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTD  307 (400)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEE
T ss_pred             EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEec
Confidence            33333356789999977777777777788999999875433222222  22344566663 34444554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=0.00021  Score=63.41  Aligned_cols=216  Identities=6%  Similarity=0.043  Sum_probs=125.0

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC-C----eEEEEeCCCCcee--EEecccccceEEEEEec
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED-N----TAKVWGLTLGSVV--STFKSHQSTILAVAVLS   78 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-g----~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~   78 (392)
                      +.|+.+|+++++..... ........++|++++++|+.+... +    .+.+.+. .+...  ..+. .......++++|
T Consensus       159 ~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp  235 (430)
T 3tc9_A          159 HPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHP  235 (430)
T ss_dssp             EEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECT
T ss_pred             CcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeC
Confidence            56778887765544333 345568899999999966665542 2    2333443 33222  2222 123356788999


Q ss_pred             -CCCEEEEEeCCCeEEEEEcCCceee--eecc--cceeEEEEeCCCCEEEEe-cCCCcEEEEeCCCCCCC-Ccceeeec-
Q psy17243         79 -DSRRVVTSDKAGVIAVWVADNAQLL--YSAL--GPSKCLTVTHNMKYIVSG-DGDNSLRIWPTSPQTHK-DDERFTVS-  150 (392)
Q Consensus        79 -~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~--~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~-~~~~~~~~-  150 (392)
                       ++..+++-...+.|..++...+...  ....  .....++++|++++|+++ ...+.|..++....... .......+ 
T Consensus       236 ~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~  315 (430)
T 3tc9_A          236 INGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQ  315 (430)
T ss_dssp             TTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEC
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEecc
Confidence             6666666667789999999877642  2221  235689999999955555 56788999876532110 00000000 


Q ss_pred             --------------cccceE-EEEEE--------cCCCEEEEeeCCCcEEEEEcCCCeEEEEEec----C----C-----
Q psy17243        151 --------------HSEEIT-CFTVT--------WDSQYLITGSRDMSLKVWQVVGGKLAQVLVG----H----T-----  194 (392)
Q Consensus       151 --------------~~~~v~-~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~----~-----  194 (392)
                                    .-.... .++..        +++.++++-...+.|+.++ .+++.....-.    .    .     
T Consensus       316 ~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~  394 (430)
T 3tc9_A          316 QGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQ  394 (430)
T ss_dssp             TTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTT
T ss_pred             CCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchh
Confidence                          011123 45453        2355555555567888888 45654333211    0    1     


Q ss_pred             ----CceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        195 ----DHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       195 ----~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                          .....+++.|.++.++++-..++.|+.++++
T Consensus       395 ~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          395 EARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             hcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence                1467888885467777776677788877754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.42  E-value=1.5e-05  Score=75.11  Aligned_cols=223  Identities=11%  Similarity=0.095  Sum_probs=130.0

Q ss_pred             EEEecC-CCCeEEEEeCCC-----------eEEEEeCCCCcee--EEecc-cccceEEEEEecCCCEEEEEeC-CCeEEE
Q psy17243         31 CVAISP-NSIFAVSGSEDN-----------TAKVWGLTLGSVV--STFKS-HQSTILAVAVLSDSRRVVTSDK-AGVIAV   94 (392)
Q Consensus        31 ~~~~~~-~~~~l~~~~~dg-----------~v~iwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~~i~i   94 (392)
                      ++++.+ ++++++.|+.+.           .+.+||..+++..  ..+.. +.....++++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 888888887543           5889999887532  22221 2233445777889999999884 468999


Q ss_pred             EEcCCceeeeecc--cc--eeEEEEeCCCCEEEEec-CC-----CcEEEEeCCCCCCCCc-----ceeeeccccceEEEE
Q psy17243         95 WVADNAQLLYSAL--GP--SKCLTVTHNMKYIVSGD-GD-----NSLRIWPTSPQTHKDD-----ERFTVSHSEEITCFT  159 (392)
Q Consensus        95 wd~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~-~d-----~~i~~~d~~~~~~~~~-----~~~~~~~~~~v~~~~  159 (392)
                      ||..+.+-.....  .+  ..+++..++++.++.|+ .+     ..+.+||..+......     .........    ..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~----~~  345 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ----GL  345 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT----GG
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc----ce
Confidence            9998775433221  11  12455667899999988 34     5689999875432211     000000000    01


Q ss_pred             EEcCCCEEEEeeCC---------CcEEEEEcCCCeEEEEEecCC---------CceeEEEEecCCCcEEEEecCCC----
Q psy17243        160 VTWDSQYLITGSRD---------MSLKVWQVVGGKLAQVLVGHT---------DHVSCVAVAVTNKSLVVSGSKDS----  217 (392)
Q Consensus       160 ~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg----  217 (392)
                      +..++..++.++.+         ..+..||..+.........+.         ..-.++.+...++.+++.|+.++    
T Consensus       346 ~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~  425 (656)
T 1k3i_A          346 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS  425 (656)
T ss_dssp             GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred             eecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence            11233444444333         457889988765443322221         12344455445788888888543    


Q ss_pred             -------eEEEEECCCCceeeee--cccccc-eeEEEEcCCCeEEEEcCC
Q psy17243        218 -------NLIVWDMETGGEEHFL--AGHLGC-VTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       218 -------~i~iwd~~~~~~~~~~--~~~~~~-v~~~~~~~dg~~~~~~~~  257 (392)
                             .|.+||..+.+-....  ..+... -.+++..|+|++++.+..
T Consensus       426 ~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~  475 (656)
T 1k3i_A          426 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQ  475 (656)
T ss_dssp             BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCB
T ss_pred             CcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCc
Confidence                   6888888776544332  222222 345567789999998864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.42  E-value=4e-06  Score=79.23  Aligned_cols=224  Identities=14%  Similarity=0.027  Sum_probs=132.2

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEE-eCCCeEEEEeCCC----CceeEEecccccceEEEEEecCC
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSG-SEDNTAKVWGLTL----GSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +.|++.++.+.+....+.. ...+..++|.+.+..|+.+ ...+.|..+++..    ......+.........|++.+.+
T Consensus       386 ~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             cceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            4577777766554444432 3456789999866656554 4557899999875    22222222112234567777554


Q ss_pred             CEEE-EEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecC--CCcEEEEeCCCCCCCCcceeeeccccc
Q psy17243         81 RRVV-TSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDG--DNSLRIWPTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        81 ~~l~-~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~  154 (392)
                      ..|+ +-...+.|.++++.........   ......+++.|.+.+|+.+..  .+.|.++++.....   ..+....-..
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---~~l~~~~l~~  541 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTENIQW  541 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---CEESCSSCSS
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---eEEEeCCCCC
Confidence            4444 4455678999998765433222   234568889987666666543  26788877753221   1111122344


Q ss_pred             eEEEEEEcCCCEEEEe-eCCCcEEEEEcCCCeEEEEEec--CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee
Q psy17243        155 ITCFTVTWDSQYLITG-SRDMSLKVWQVVGGKLAQVLVG--HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       155 v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      ...|+++|++..|+.+ ...+.|..+++........+..  .......|++.  .+.++++....+.|..++..+++.+.
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd--~~~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE--TTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEE--CCEEEEEeCCCCeEEEEEccCCCceE
Confidence            5779999876555544 4567899999864332222221  11233456665  34677777778899999988888777


Q ss_pred             eecc
Q psy17243        232 FLAG  235 (392)
Q Consensus       232 ~~~~  235 (392)
                      .+..
T Consensus       620 ~i~~  623 (699)
T 1n7d_A          620 LLAE  623 (699)
T ss_dssp             CCCT
T ss_pred             Eeec
Confidence            6653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.36  E-value=0.00087  Score=63.96  Aligned_cols=211  Identities=12%  Similarity=0.086  Sum_probs=129.7

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEE-eCCCeEEEEEcCCc------eeee-eccccee
Q psy17243         40 FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTS-DKAGVIAVWVADNA------QLLY-SALGPSK  111 (392)
Q Consensus        40 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~------~~~~-~~~~~~~  111 (392)
                      +|+.+ ....|+..++........+. ....+..++|.+....|+.+ ...+.|+.+++...      ..+. .......
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            44444 34568888887665544444 34567899999866665555 45578888888753      1111 1234556


Q ss_pred             EEEEeCCCCEEEE-ecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC--CCcEEEEEcCCCeEEE
Q psy17243        112 CLTVTHNMKYIVS-GDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR--DMSLKVWQVVGGKLAQ  188 (392)
Q Consensus       112 ~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~  188 (392)
                      .+++.+.+..|+. -...+.|.+.++...   ....+..........|++.|...+|+....  .+.|...++.......
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~---~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCC---eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence            8999987755554 455789999998632   222222234456789999998666666653  2678888886544433


Q ss_pred             EEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc--cccceeEEEEcCCCeEEEEcC
Q psy17243        189 VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG--HLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .+...-...+.|++.+..+.++++-...+.|...++........+..  .......|++..+ .+.+++.
T Consensus       552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~  620 (791)
T 3m0c_C          552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDI  620 (791)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEET
T ss_pred             EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEEC
Confidence            34333457889999977777777767778999999875443333332  1223446666433 4555543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.34  E-value=0.0012  Score=61.49  Aligned_cols=224  Identities=10%  Similarity=0.014  Sum_probs=131.5

Q ss_pred             CCeEEEEECCCcc-ceeeeccCCcCeeEEEecCCCCeEEEE-eCCCeEEEEeCCCCce-eEEecccccceEEEEEecCCC
Q psy17243          5 DCLVNVWQMNSHE-LQSTMEGHLNTVSCVAISPNSIFAVSG-SEDNTAKVWGLTLGSV-VSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         5 dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      ...|++.++.... ....+...-.....++|++.+..|+.+ ...+.|..++++.... ...+...-.....+++.+.+.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            4678888887543 122222234557899999966555544 4567898898875532 223332235678999998666


Q ss_pred             EEEEE-eCCCeEEEEEcCCcee--ee-ecccceeEEEEeCCCCEEEEecC--CCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         82 RVVTS-DKAGVIAVWVADNAQL--LY-SALGPSKCLTVTHNMKYIVSGDG--DNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        82 ~l~~~-~~d~~i~iwd~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      .|+.+ ...+.|.+.++.....  +. ........+++.|.+..|+....  .+.|...++...   .........-...
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~---~~~~l~~~~~~~P  173 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---SRFIIINSEIYWP  173 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC---SCEEEECSSCSSE
T ss_pred             EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC---ceEEEEeCCCCCC
Confidence            55555 4568999999876532  22 22335678999997666666553  467777776522   1112222234567


Q ss_pred             EEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee
Q psy17243        156 TCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                      ..+++++++..|+.+. ..+.|..+|+..........+.......+++.  .+.++++-..++.|...|..+++....+
T Consensus       174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~--~~~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEES--SSEEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEe--CCEEEEecCCCCEEEEEECCCCcccEEE
Confidence            8999999766666554 46789999986544333222122233466665  3366666667888999998877654433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.29  E-value=0.00055  Score=57.77  Aligned_cols=182  Identities=11%  Similarity=0.217  Sum_probs=117.1

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCC----CC---eEEEEe-C--CCeEEEEeCC--CCceeEEecc------
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPN----SI---FAVSGS-E--DNTAKVWGLT--LGSVVSTFKS------   66 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~---~l~~~~-~--dg~v~iwd~~--~~~~~~~~~~------   66 (392)
                      .+-+.+||+ +++.++.+..  +.++.+..-|+    ++   ++++.. .  +++|.+|+++  ++. +..+..      
T Consensus        49 ~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~  124 (355)
T 3amr_A           49 KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIA  124 (355)
T ss_dssp             TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEE
T ss_pred             CCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcC
Confidence            467999999 7888888864  56777777663    22   233333 3  5789999763  433 444421      


Q ss_pred             cc-cceEEEEE--ecC-CC-EEEEEeCCCeEEEEEcC---C----ceeeeec--ccceeEEEEeCCCCEEEEecCCCcEE
Q psy17243         67 HQ-STILAVAV--LSD-SR-RVVTSDKAGVIAVWVAD---N----AQLLYSA--LGPSKCLTVTHNMKYIVSGDGDNSLR  132 (392)
Q Consensus        67 ~~-~~v~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~---~----~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~  132 (392)
                      .. ..+..+++  +|. ++ ++++...+|.+..|++.   .    .+.++++  ...+..+...+....|+++-++..|.
T Consensus       125 t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw  204 (355)
T 3amr_A          125 TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIW  204 (355)
T ss_dssp             CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred             CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEE
Confidence            11 45666777  664 43 68888999999999883   2    2444443  34667888889899999999998787


Q ss_pred             EEeCCCCCCCC--cceee-ec-cccceEEEEEE--cCCC-EEEEee-CCCcEEEEEcC-CCeEEEEE
Q psy17243        133 IWPTSPQTHKD--DERFT-VS-HSEEITCFTVT--WDSQ-YLITGS-RDMSLKVWQVV-GGKLAQVL  190 (392)
Q Consensus       133 ~~d~~~~~~~~--~~~~~-~~-~~~~v~~~~~~--~~~~-~l~~~~-~dg~i~i~d~~-~~~~~~~~  190 (392)
                      .|+.+......  ..... .. ....+..|++-  ++++ +|++++ .+....+||.. +.+.+..+
T Consensus       205 ~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          205 KFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            78865332111  11111 11 12467888874  4555 666666 57799999986 55555555

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.28  E-value=0.0019  Score=57.64  Aligned_cols=226  Identities=9%  Similarity=0.028  Sum_probs=134.1

Q ss_pred             eeEEEecC-CCCeEEEE-eCCCeEEEEeCCCCceeEEeccc---ccceEEEEE-------ecCCCEEEEEeCCC------
Q psy17243         29 VSCVAISP-NSIFAVSG-SEDNTAKVWGLTLGSVVSTFKSH---QSTILAVAV-------LSDSRRVVTSDKAG------   90 (392)
Q Consensus        29 v~~~~~~~-~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~d~------   90 (392)
                      ...|+|.| +...|+.+ ...+.|++.|++++.....+...   ......++|       +++++.|+++...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            56899998 34445444 43467889998887665544422   235789999       99999777776654      


Q ss_pred             -eEEEEEcCC-cee--------eeecccceeEEEEeCC-CCEEEEecCCCcEEEEeCC-------CCCCC-----C----
Q psy17243         91 -VIAVWVADN-AQL--------LYSALGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTS-------PQTHK-----D----  143 (392)
Q Consensus        91 -~i~iwd~~~-~~~--------~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~-------~~~~~-----~----  143 (392)
                       .|.+++... +..        +... .....++++|+ +.++++-..++.|..+|+.       +....     .    
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             256665443 121        2222 24457888994 5555566678889999986       33320     0    


Q ss_pred             -cceeeeccccceEEEEEEcCCCEEEEe-eCCCcEEEEEc--CCCeE--EEEEecC---C------------Ccee-EEE
Q psy17243        144 -DERFTVSHSEEITCFTVTWDSQYLITG-SRDMSLKVWQV--VGGKL--AQVLVGH---T------------DHVS-CVA  201 (392)
Q Consensus       144 -~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~--~~~~~--~~~~~~~---~------------~~v~-~~~  201 (392)
                       ..............++|+|++++|+.+ .....|+.++.  ..+..  ...+.+.   .            .... .++
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~  379 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF  379 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence             011122233456789999999965555 45678888665  33322  1222221   0            1123 334


Q ss_pred             Eec------CCCcEEEEecCCCeEEEEECCCCceeeeeccc------------------------ccceeEEEEcCC-Ce
Q psy17243        202 VAV------TNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH------------------------LGCVTCVKLAGD-GT  250 (392)
Q Consensus       202 ~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~~~~~~d-g~  250 (392)
                      ...      .++.++++=..+..|+.++ .++. +.++.+.                        -..-..|++.++ |.
T Consensus       380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~  457 (496)
T 3kya_A          380 VKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM  457 (496)
T ss_dssp             EECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred             EccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence            431      3456777777788999998 4553 3333221                        123567888886 88


Q ss_pred             EEEEcCC
Q psy17243        251 VAMSDLP  257 (392)
Q Consensus       251 ~~~~~~~  257 (392)
                      +.+.+..
T Consensus       458 lyVaD~~  464 (496)
T 3kya_A          458 FYVHDQV  464 (496)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            8888753

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.28  E-value=0.0005  Score=57.51  Aligned_cols=198  Identities=10%  Similarity=0.015  Sum_probs=123.4

Q ss_pred             CCcCeeEEEecCCCCeEEEEe-CCCeEEEEeCCCCceeEE-ecc----c--ccceEEEEE---ecCCCEEEEEe------
Q psy17243         25 HLNTVSCVAISPNSIFAVSGS-EDNTAKVWGLTLGSVVST-FKS----H--QSTILAVAV---LSDSRRVVTSD------   87 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~l~~~~------   87 (392)
                      ...---+++|.+....|+.++ ..++|..|+...+..... +..    .  ...+..+.|   .|+++++++..      
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            334445789988555555555 789999999876644333 221    1  113688999   58876666543      


Q ss_pred             -------CCCeEEEEEcC---Cceeeeecc----------------cceeEEEEeCCCCEEEEecCC-CcEEEEeCCCCC
Q psy17243         88 -------KAGVIAVWVAD---NAQLLYSAL----------------GPSKCLTVTHNMKYIVSGDGD-NSLRIWPTSPQT  140 (392)
Q Consensus        88 -------~d~~i~iwd~~---~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~  140 (392)
                             .+..+..+|+.   +++.+....                .....+++.++|+..++++.. +.|..++.... 
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-  169 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-  169 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-
Confidence                   26789999999   776654322                136789999999999988887 88777776532 


Q ss_pred             CCCcceeee-----ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE--EEEEe-cC---CCceeEE-EEecCCCc
Q psy17243        141 HKDDERFTV-----SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL--AQVLV-GH---TDHVSCV-AVAVTNKS  208 (392)
Q Consensus       141 ~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~-~~---~~~v~~~-~~~~~~~~  208 (392)
                        .......     ......+.|+++|+++.|++....|.|..+|+.+...  +..-. +.   -.....+ ..- .+++
T Consensus       170 --~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~-~~G~  246 (334)
T 2p9w_A          170 --TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVP-VGNE  246 (334)
T ss_dssp             --CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEE-ETTE
T ss_pred             --EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccc-cCCE
Confidence              1111111     1122367899999999888887799999999885432  21110 21   1123333 222 3455


Q ss_pred             E-EEEecCCCeEEEEECCC
Q psy17243        209 L-VVSGSKDSNLIVWDMET  226 (392)
Q Consensus       209 ~-l~~~~~dg~i~iwd~~~  226 (392)
                      . +++....+.+.+.+.+.
T Consensus       247 vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          247 SVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEEETTEEEEEECSST
T ss_pred             EEEEEcCCCCEEEEECCCC
Confidence            5 56655666666666544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.25  E-value=0.0031  Score=58.69  Aligned_cols=222  Identities=8%  Similarity=0.008  Sum_probs=142.2

Q ss_pred             cCCeEEEEECCCccceeeec-cCCcCeeEEEecCCCCeEE-EEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCC
Q psy17243          4 MDCLVNVWQMNSHELQSTME-GHLNTVSCVAISPNSIFAV-SGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (392)
                      ..+.|+..++.+.+....+. ..-.....++|++.+..|+ +-..++.|..++++.......+.........+++.+.+.
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            34678888887654433322 1234678999999655554 555678999999876544433432234567889987766


Q ss_pred             EEEEE-eCCCeEEEEEcCCcee--ee-ecccceeEEEEeCCCCEEEEecC--CCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         82 RVVTS-DKAGVIAVWVADNAQL--LY-SALGPSKCLTVTHNMKYIVSGDG--DNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        82 ~l~~~-~~d~~i~iwd~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      .|+.+ ...+.|.+.++.....  +. ........+++.|....|+....  .+.|...++....   .... ...-...
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---~~~l-~~~~~~P  168 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---RTTL-VPNVGRA  168 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEE-ECSCSSE
T ss_pred             EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---eEEE-ECCCCCc
Confidence            66554 4567899999876532  22 22235678999986666666653  5678888876332   1111 2344567


Q ss_pred             EEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeee
Q psy17243        156 TCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF  232 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  232 (392)
                      ..++++++++.|+.+. ..+.|..+|+..... ..+.........+++.  .+.++++-...+.|...|..+++....
T Consensus       169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~--~~~ly~tD~~~~~I~~~dk~tg~~~~~  243 (628)
T 4a0p_A          169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQY--QDYIYWTDWSRRSIERANKTSGQNRTI  243 (628)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             ceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEE--CCEEEEecCCCCEEEEEECCCCCceEE
Confidence            8999999877666665 467899999865433 3333334445678876  356777766788999999777654433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.20  E-value=0.0022  Score=55.16  Aligned_cols=225  Identities=11%  Similarity=0.093  Sum_probs=126.2

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce--eEEec---ccccceEEEEEecC---CCEEEEEeCC------Ce
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV--VSTFK---SHQSTILAVAVLSD---SRRVVTSDKA------GV   91 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~d------~~   91 (392)
                      -..-..|+|.|+|++++ +..+|.|.+++  +++.  +..+.   ........++++|+   +..|+++...      +.
T Consensus        30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            34567999999998554 45679999998  4432  22221   12356789999998   5555554432      67


Q ss_pred             EEEEEcCCc-----eeeee-cc------cceeEEEEeCCCCEEEEecC-------------CCcEEEEeCCCCCC-----
Q psy17243         92 IAVWVADNA-----QLLYS-AL------GPSKCLTVTHNMKYIVSGDG-------------DNSLRIWPTSPQTH-----  141 (392)
Q Consensus        92 i~iwd~~~~-----~~~~~-~~------~~~~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~~-----  141 (392)
                      |..++....     +.+.. +.      .....+++.|++.+.++.+.             .+.|..++....-.     
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            888887643     12211 22      12357999999976555332             25666666542100     


Q ss_pred             -----CCcceeeeccccceEEEEEEc-CCCEEEEeeCCCcE------EEEEcCCCe------------------EEEEEe
Q psy17243        142 -----KDDERFTVSHSEEITCFTVTW-DSQYLITGSRDMSL------KVWQVVGGK------------------LAQVLV  191 (392)
Q Consensus       142 -----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i------~i~d~~~~~------------------~~~~~~  191 (392)
                           ........++ .....++|+| +++++++-.....+      .+.-+..+.                  ++..+.
T Consensus       187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~  265 (352)
T 2ism_A          187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP  265 (352)
T ss_dssp             TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence                 0111122222 3356788999 56544443322221      122222221                  222332


Q ss_pred             cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce------eeeecccccceeEEEEcCCCeEEEEcCC
Q psy17243        192 GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE------EHFLAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       192 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                       +......++|.  ++.++++.-..+.|...++.....      ...+......+..+++.|||.+.++...
T Consensus       266 -~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          266 -QGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             -TCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred             -CCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence             22345667774  567777777778888888764431      1222222357899999999998887653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.06  E-value=0.0053  Score=54.85  Aligned_cols=223  Identities=9%  Similarity=0.052  Sum_probs=126.5

Q ss_pred             CeEEEEECCCccceeeeccC---CcCeeEEEe-------cCCCCeEEEEeCCC-------eEEEEeCCC-Ccee-----E
Q psy17243          6 CLVNVWQMNSHELQSTMEGH---LNTVSCVAI-------SPNSIFAVSGSEDN-------TAKVWGLTL-GSVV-----S   62 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h---~~~v~~~~~-------~~~~~~l~~~~~dg-------~v~iwd~~~-~~~~-----~   62 (392)
                      +.|++.|++++++...+...   ......++|       ++++++|+.+...+       .|.+.+... +...     .
T Consensus       162 ~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~  241 (496)
T 3kya_A          162 KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQ  241 (496)
T ss_dssp             EEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEE
T ss_pred             CeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccce
Confidence            45778887776655444322   235789999       99998666665543       266665443 2221     2


Q ss_pred             EecccccceEEEEEecC-CCEEEEEeCCCeEEEEEcC-------Ccee--------------eeecc--cceeEEEEeCC
Q psy17243         63 TFKSHQSTILAVAVLSD-SRRVVTSDKAGVIAVWVAD-------NAQL--------------LYSAL--GPSKCLTVTHN  118 (392)
Q Consensus        63 ~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~-------~~~~--------------~~~~~--~~~~~~~~~~~  118 (392)
                      .+... .....++++|+ +.++++-..++.|..+|+.       ++..              +....  .....++++|+
T Consensus       242 ~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~  320 (496)
T 3kya_A          242 LIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPT  320 (496)
T ss_dssp             EEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTT
T ss_pred             eeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCC
Confidence            22211 23457788995 4455556677889999997       4443              11121  22468999999


Q ss_pred             CCEEEEe-cCCCcEEEEeCCCCCCC-Ccceeeec---------------cccceE-EEEEE-------cCCCEEEEeeCC
Q psy17243        119 MKYIVSG-DGDNSLRIWPTSPQTHK-DDERFTVS---------------HSEEIT-CFTVT-------WDSQYLITGSRD  173 (392)
Q Consensus       119 ~~~l~~~-~~d~~i~~~d~~~~~~~-~~~~~~~~---------------~~~~v~-~~~~~-------~~~~~l~~~~~d  173 (392)
                      ++.|+++ ...+.|+.++....... .......+               .-.... .++..       +++.++++-...
T Consensus       321 G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N  400 (496)
T 3kya_A          321 GKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLN  400 (496)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGG
T ss_pred             CCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCC
Confidence            9965555 45678888665421110 00001101               001233 44444       455666666667


Q ss_pred             CcEEEEEcCCCeEEEEEecCC------------------------CceeEEEEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        174 MSLKVWQVVGGKLAQVLVGHT------------------------DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       174 g~i~i~d~~~~~~~~~~~~~~------------------------~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      ..|+.++ .++. +.++.+..                        .....|++.+.++.++++=..+..|+.++++....
T Consensus       401 ~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          401 FCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             TEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred             CEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence            8899998 4564 34443220                        12457788743467777666777888888765544


Q ss_pred             ee
Q psy17243        230 EH  231 (392)
Q Consensus       230 ~~  231 (392)
                      +.
T Consensus       479 ~~  480 (496)
T 3kya_A          479 VA  480 (496)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.04  E-value=0.006  Score=56.74  Aligned_cols=206  Identities=10%  Similarity=0.024  Sum_probs=118.5

Q ss_pred             CCCeEEEEeCCCCc-eeEEecccccceEEEEEecCCCEEEEEeC-CCeEEEEEcCCcee---ee-ecccceeEEEEeCCC
Q psy17243         46 EDNTAKVWGLTLGS-VVSTFKSHQSTILAVAVLSDSRRVVTSDK-AGVIAVWVADNAQL---LY-SALGPSKCLTVTHNM  119 (392)
Q Consensus        46 ~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~---~~-~~~~~~~~~~~~~~~  119 (392)
                      ....|+..+++... ........-.....++|++.+..|+.+.. .+.|..++++....   +. .-......+++.+.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            35678888887543 12222223445789999997777776654 57888888876531   11 112456789999865


Q ss_pred             CEEEE-ecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC--CCcEEEEEcCCCeEEEEEecCCCc
Q psy17243        120 KYIVS-GDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR--DMSLKVWQVVGGKLAQVLVGHTDH  196 (392)
Q Consensus       120 ~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~  196 (392)
                      ..|+. -...+.|.+.++.....   .......-.....+++.|.+.+|+....  .+.|...++............-..
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~---~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~  172 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLR---KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW  172 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSC---EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSS
T ss_pred             CEEEEEeCCCCEEEEEECCCCCE---EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCC
Confidence            55544 45678999999863321   1222233455678999998666666553  467777776533332333233456


Q ss_pred             eeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        197 VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       197 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      .+.+++++.++.+.++-...+.|...|+..........+.......+++..+ .+..++
T Consensus       173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td  230 (619)
T 3s94_A          173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTD  230 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEEC
T ss_pred             CcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEec
Confidence            7899999777777777777889999998754332222212223346666655 444444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.95  E-value=0.0026  Score=53.33  Aligned_cols=214  Identities=12%  Similarity=0.081  Sum_probs=108.9

Q ss_pred             CeEEEEECCCcccee--eeccCCcCeeEEEecCCCCeEEEEeCC-----CeEEEEeCCCCc---eeE--EecccccceEE
Q psy17243          6 CLVNVWQMNSHELQS--TMEGHLNTVSCVAISPNSIFAVSGSED-----NTAKVWGLTLGS---VVS--TFKSHQSTILA   73 (392)
Q Consensus         6 g~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~---~~~--~~~~~~~~v~~   73 (392)
                      ..+.+||..+.+-..  .+....... +++ ..++.+++.|+.+     ..+.+||..+.+   -..  .+......- +
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~  107 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-G  107 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-E
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccc-cEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-e
Confidence            468888887654222  222111111 222 2356677777754     468999988766   322  222111111 2


Q ss_pred             EEEecCCCEEEEEeCC-----CeEEEEEcCCceeee--ecccce-eEEEEeCCCCEEEEecCC-----CcEEEEeCCCCC
Q psy17243         74 VAVLSDSRRVVTSDKA-----GVIAVWVADNAQLLY--SALGPS-KCLTVTHNMKYIVSGDGD-----NSLRIWPTSPQT  140 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~--~~~~~~-~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~  140 (392)
                      ++. .+++.++.|+.+     ..+.+||+.+.+-..  ....+. ...+...+++.++.|+.+     ..+.+||+.+..
T Consensus       108 ~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          108 ATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             EEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc
Confidence            222 256666666543     368889988765332  221111 112222366777777654     468889987543


Q ss_pred             CCCcceeeeccccceEEEEEEcCCCEEEEeeCC-----CcEEEEEcCCCeEEEEEecCCCce-eEEEEecCCCcEEEEec
Q psy17243        141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-----MSLKVWQVVGGKLAQVLVGHTDHV-SCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~  214 (392)
                      .......  .....-.++.. .++++++.|+.+     ..+.+||+.+.+-...-....... .+++.  .++.+++.|+
T Consensus       187 W~~~~~~--p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG  261 (301)
T 2vpj_A          187 WTNVTPM--ATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAG  261 (301)
T ss_dssp             EEEECCC--SSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred             EEeCCCC--CcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcC
Confidence            3222111  11111112222 256677777653     468999998876443321111111 12222  2566777776


Q ss_pred             CC-----CeEEEEECCCCc
Q psy17243        215 KD-----SNLIVWDMETGG  228 (392)
Q Consensus       215 ~d-----g~i~iwd~~~~~  228 (392)
                      .+     ..+.+||+.+.+
T Consensus       262 ~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          262 YDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             BCSSSBEEEEEEEETTTTE
T ss_pred             cCCCcccccEEEEcCCCCe
Confidence            55     357788887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.89  E-value=0.0092  Score=51.30  Aligned_cols=228  Identities=10%  Similarity=0.050  Sum_probs=128.5

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc-eeEEec---ccccceEEEEEecC---CCEEEEEeC----C----C
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS-VVSTFK---SHQSTILAVAVLSD---SRRVVTSDK----A----G   90 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----~   90 (392)
                      -..-..|+|.|+++++ .+..+|.|.+++ .+++ .+..+.   ........|+++|+   +..|+++..    +    .
T Consensus        28 l~~P~~ia~~pdG~l~-V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYL-VTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEE-EEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEE-EEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            3456899999999854 455679999997 4554 222221   12356889999997   555555443    2    5


Q ss_pred             eEEEEEcCCc-------eeeee-cc----cceeEEEEeCCCCEEEEecC-------------CCcEEEEeCCCCCCC---
Q psy17243         91 VIAVWVADNA-------QLLYS-AL----GPSKCLTVTHNMKYIVSGDG-------------DNSLRIWPTSPQTHK---  142 (392)
Q Consensus        91 ~i~iwd~~~~-------~~~~~-~~----~~~~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~~~---  142 (392)
                      .|..++....       +.+.. ..    .....+.|.|++.+.++.+.             .|.|..++....-..   
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777877654       11211 11    12357899999986665432             245666665421000   


Q ss_pred             --CcceeeeccccceEEEEEEc-CCCEEEEeeCCC---cEEEEEcCC----------------CeEEEEEecCCCceeEE
Q psy17243        143 --DDERFTVSHSEEITCFTVTW-DSQYLITGSRDM---SLKVWQVVG----------------GKLAQVLVGHTDHVSCV  200 (392)
Q Consensus       143 --~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~----------------~~~~~~~~~~~~~v~~~  200 (392)
                        .......++ .....++|+| +++++++-....   .|.+.....                ..++..+.........+
T Consensus       186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~  264 (354)
T 3a9g_A          186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA  264 (354)
T ss_dssp             STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred             CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence              111122233 3346789999 565444432221   233332110                01223331122356677


Q ss_pred             EEec------CCCcEEEEecCCCeEEEEECCCC-cee--eee-cccccceeEEEEcCCCeEEEEcC
Q psy17243        201 AVAV------TNKSLVVSGSKDSNLIVWDMETG-GEE--HFL-AGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       201 ~~~~------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~-~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      +|..      .++.++++.-..+.|...++... +..  ..+ .+....+..+++.|||.+.+++.
T Consensus       265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            7731      35677777777888999988753 322  222 22345789999999999888764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.89  E-value=0.0055  Score=51.29  Aligned_cols=134  Identities=13%  Similarity=0.084  Sum_probs=93.7

Q ss_pred             cCCeEEEEECCCccceee-ecc----C--CcCeeEEEe---cCCCCeEEEEe-------------CCCeEEEEeCC---C
Q psy17243          4 MDCLVNVWQMNSHELQST-MEG----H--LNTVSCVAI---SPNSIFAVSGS-------------EDNTAKVWGLT---L   57 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~-~~~----h--~~~v~~~~~---~~~~~~l~~~~-------------~dg~v~iwd~~---~   57 (392)
                      ..+.|..|+...+..... +.+    .  ...+..|.|   .|+++++++..             .+..|..||+.   +
T Consensus        33 ~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t  112 (334)
T 2p9w_A           33 YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN  112 (334)
T ss_dssp             TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT
T ss_pred             cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCC
Confidence            368899998875533322 221    1  113579999   68877776543             26789999999   7


Q ss_pred             CceeEEec--cc-----------ccceEEEEEecCCCEEEEEeCC-CeEEEEEcCCceeeeec--c------cceeEEEE
Q psy17243         58 GSVVSTFK--SH-----------QSTILAVAVLSDSRRVVTSDKA-GVIAVWVADNAQLLYSA--L------GPSKCLTV  115 (392)
Q Consensus        58 ~~~~~~~~--~~-----------~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~--~------~~~~~~~~  115 (392)
                      ++.+....  ..           ......++..++|+..++++.. +.|...+..........  .      ...+.+++
T Consensus       113 g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~  192 (334)
T 2p9w_A          113 SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITF  192 (334)
T ss_dssp             CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEE
T ss_pred             CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEE
Confidence            87765443  11           1248899999999999988888 88887777654322111  1      12458999


Q ss_pred             eCCCCEEEEecCCCcEEEEeCC
Q psy17243        116 THNMKYIVSGDGDNSLRIWPTS  137 (392)
Q Consensus       116 ~~~~~~l~~~~~d~~i~~~d~~  137 (392)
                      +|+++.|++....|.|..+|+.
T Consensus       193 ~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          193 DPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             ETTTTEEEEESSSSSEEEEECS
T ss_pred             eCCCCEEEEEcCCCeEEEEcCC
Confidence            9999999998889999999987

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.89  E-value=0.00016  Score=68.36  Aligned_cols=177  Identities=12%  Similarity=0.065  Sum_probs=108.3

Q ss_pred             CCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe-CCCeEEEEEcCC----ceeeeec---ccceeEEEEeCC
Q psy17243         47 DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD-KAGVIAVWVADN----AQLLYSA---LGPSKCLTVTHN  118 (392)
Q Consensus        47 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~----~~~~~~~---~~~~~~~~~~~~  118 (392)
                      .+.|+..+++..+....+.. ...+..++|.+.+..|+.+. ..+.|+.+++..    .......   ......+++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            45788888877665544443 34567899998777777664 457899999875    2221111   123456788754


Q ss_pred             CCEE-EEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC--CCcEEEEEcCCCeEEEEEecCCC
Q psy17243        119 MKYI-VSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR--DMSLKVWQVVGGKLAQVLVGHTD  195 (392)
Q Consensus       119 ~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~  195 (392)
                      +..| ++-...+.|.++++....   ...+..........+++.|.+.+|+....  .+.|..+++........+...-.
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~---~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~  540 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVK---RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ  540 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCC---EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred             CCcEEEEeccCCeEEEEecCCCc---eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence            4444 444557889999886321   11111122244577889987666655543  26788887753322222222234


Q ss_pred             ceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        196 HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       196 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      ..+.|+++|.++.++++-...+.|.++++...
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            46789999777888888778889999998743

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.86  E-value=0.005  Score=51.63  Aligned_cols=214  Identities=12%  Similarity=0.103  Sum_probs=106.4

Q ss_pred             CeEEEEECCCcccee--eeccCCcCeeEEEecCCCCeEEEEeCC-----CeEEEEeCCCCceeEE--ecccccceEEEEE
Q psy17243          6 CLVNVWQMNSHELQS--TMEGHLNTVSCVAISPNSIFAVSGSED-----NTAKVWGLTLGSVVST--FKSHQSTILAVAV   76 (392)
Q Consensus         6 g~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~   76 (392)
                      ..+.+||+.+.+-..  .+......- +++. -++.+++.|+.+     ..+.+||..+.+-...  +...... .+++.
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRA-GMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAV  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccc-eEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEEE
Confidence            357788877654222  121111111 2222 256677777654     3588899887654322  2211111 12222


Q ss_pred             ecCCCEEEEEeCCC-----eEEEEEcCCceeeee--cccce-eEEEEeCCCCEEEEecCC-------CcEEEEeCCCCCC
Q psy17243         77 LSDSRRVVTSDKAG-----VIAVWVADNAQLLYS--ALGPS-KCLTVTHNMKYIVSGDGD-------NSLRIWPTSPQTH  141 (392)
Q Consensus        77 ~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~  141 (392)
                       -+++.++.|+.++     .+.+||+.+.+-...  ...+. ...+...+++.++.|+.+       ..+.+||+.+...
T Consensus       107 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          107 -LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             -ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             -ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence             2566777776553     577888887654322  11111 111222356666666542       4588899875433


Q ss_pred             CCcceeeeccccceEEEEEEcCCCEEEEeeCC-----CcEEEEEcCCCeEEEEEecCCCc-eeEEEEecCCCcEEEEecC
Q psy17243        142 KDDERFTVSHSEEITCFTVTWDSQYLITGSRD-----MSLKVWQVVGGKLAQVLVGHTDH-VSCVAVAVTNKSLVVSGSK  215 (392)
Q Consensus       142 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~  215 (392)
                      .......  ....-.+++. -++++++.|+.+     ..+.+||+.+.+-...-...... -..++.  .++.+++.|+.
T Consensus       186 ~~~~~~p--~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~  260 (302)
T 2xn4_A          186 TYIAEMS--TRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGD  260 (302)
T ss_dssp             EEECCCS--SCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred             EECCCCc--cccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCc
Confidence            2211111  1111112222 256777777654     46899999887544321111111 112222  25667777765


Q ss_pred             CC-----eEEEEECCCCc
Q psy17243        216 DS-----NLIVWDMETGG  228 (392)
Q Consensus       216 dg-----~i~iwd~~~~~  228 (392)
                      ++     .+.+||+.+.+
T Consensus       261 ~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          261 DGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CSSSBCCCEEEEETTTTE
T ss_pred             CCCcccccEEEEcCCCCe
Confidence            53     47788877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.85  E-value=0.0034  Score=52.75  Aligned_cols=213  Identities=10%  Similarity=0.108  Sum_probs=109.0

Q ss_pred             CeEEEEECCCccce--eeeccCCcCeeEEEecCCCCeEEEEeCC----CeEEEEeCCCCceeEE--ecccccceEEEEEe
Q psy17243          6 CLVNVWQMNSHELQ--STMEGHLNTVSCVAISPNSIFAVSGSED----NTAKVWGLTLGSVVST--FKSHQSTILAVAVL   77 (392)
Q Consensus         6 g~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~   77 (392)
                      ..+.+||..+.+-.  ..+......-.++.  -++.+++.|+.+    ..+.+||..+.+-...  +.........+.  
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--   99 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--   99 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--
T ss_pred             ceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--
Confidence            56788888765422  22221111222222  256677777754    6788999888754332  221111112222  


Q ss_pred             cCCCEEEEEeCC------CeEEEEEcCCceeeee--cccc-eeEEEEeCCCCEEEEecC---------CCcEEEEeCCCC
Q psy17243         78 SDSRRVVTSDKA------GVIAVWVADNAQLLYS--ALGP-SKCLTVTHNMKYIVSGDG---------DNSLRIWPTSPQ  139 (392)
Q Consensus        78 ~~~~~l~~~~~d------~~i~iwd~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~  139 (392)
                      -+++.++.|+.+      ..+.+||+.+.+-...  ...+ ....+...+++.++.|+.         -..+.+||+.+.
T Consensus       100 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          100 AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            256666777654      4688999988754322  1111 111122235666666653         345889998754


Q ss_pred             CCCCcceeeeccccceEEEEEEcCCCEEEEeeCC-----CcEEEEEcCCCeEEEE--EecCCCceeEEEEecCCCcEEEE
Q psy17243        140 THKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-----MSLKVWQVVGGKLAQV--LVGHTDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~  212 (392)
                      ........  .....-.++... ++++++.|+.+     ..+.+||+.+.+-...  +........ ++..  ++.+++.
T Consensus       180 ~W~~~~~~--p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~--~~~i~v~  253 (306)
T 3ii7_A          180 TWTELCPM--IEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK-CAAV--GSIVYVL  253 (306)
T ss_dssp             EEEEECCC--SSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE-EEEE--TTEEEEE
T ss_pred             eEEECCCc--cchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee-EEEE--CCEEEEE
Confidence            32222111  111111122222 56677777643     4689999988753322  111111122 2222  5667777


Q ss_pred             ecCC-----CeEEEEECCCCc
Q psy17243        213 GSKD-----SNLIVWDMETGG  228 (392)
Q Consensus       213 ~~~d-----g~i~iwd~~~~~  228 (392)
                      |+.+     ..+.+||+.+.+
T Consensus       254 GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          254 AGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             ECBCSSSBCCEEEEEETTTTE
T ss_pred             eCcCCCeeeeeEEEEcCCCCe
Confidence            7744     457888887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.62  E-value=0.011  Score=49.70  Aligned_cols=214  Identities=11%  Similarity=0.088  Sum_probs=106.2

Q ss_pred             CeEEEEECCCcccee--eeccCCcCeeEEEecCCCCeEEEEeC----C-----CeEEEEeCCCCceeEE--ecccccceE
Q psy17243          6 CLVNVWQMNSHELQS--TMEGHLNTVSCVAISPNSIFAVSGSE----D-----NTAKVWGLTLGSVVST--FKSHQSTIL   72 (392)
Q Consensus         6 g~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~~~~~----d-----g~v~iwd~~~~~~~~~--~~~~~~~v~   72 (392)
                      ..+.+||..+.+-..  .+......- +++. .++.+++.|+.    +     ..+.+||..+.+-...  +........
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  116 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG  116 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence            467888887654322  121111111 2222 25666677665    2     4688899887653322  211111112


Q ss_pred             EEEEecCCCEEEEEeCC-----CeEEEEEcCCceeeeec--ccce-eEEEEeCCCCEEEEecCC-----CcEEEEeCCCC
Q psy17243         73 AVAVLSDSRRVVTSDKA-----GVIAVWVADNAQLLYSA--LGPS-KCLTVTHNMKYIVSGDGD-----NSLRIWPTSPQ  139 (392)
Q Consensus        73 ~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~--~~~~-~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~  139 (392)
                      .+.+  +++.++.|+.+     ..+.+||+.+.+-....  ..+. ...+...++..++.|+.+     ..+.+||+.+.
T Consensus       117 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          117 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERN  194 (308)
T ss_dssp             EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             EEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCC
Confidence            2222  56666666533     46888998877543221  1111 111122266677777654     46888998754


Q ss_pred             CCCCcceeeeccccceEEEEEEcCCCEEEEeeCC-----CcEEEEEcCCCeEEEEEecCCC-ceeEEEEecCCCcEEEEe
Q psy17243        140 THKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-----MSLKVWQVVGGKLAQVLVGHTD-HVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~  213 (392)
                      .......... .... .+++.. ++++++.|+.+     ..+.+||+.+.+-...-..... .-.+++..  ++.+++.|
T Consensus       195 ~W~~~~~~p~-~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~G  269 (308)
T 1zgk_A          195 EWRMITAMNT-IRSG-AGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLG  269 (308)
T ss_dssp             EEEECCCCSS-CCBS-CEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred             eEeeCCCCCC-cccc-ceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEc
Confidence            3322211111 1111 122222 66777777654     5699999988754332111111 11122232  56677777


Q ss_pred             cCC-----CeEEEEECCCCc
Q psy17243        214 SKD-----SNLIVWDMETGG  228 (392)
Q Consensus       214 ~~d-----g~i~iwd~~~~~  228 (392)
                      +.+     ..+.+||+.+.+
T Consensus       270 G~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          270 GYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CBCSSCBCCEEEEEETTTTE
T ss_pred             CcCCCcccceEEEEcCCCCE
Confidence            644     347777777654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.61  E-value=0.029  Score=48.67  Aligned_cols=221  Identities=7%  Similarity=0.075  Sum_probs=134.8

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC-CceeEEecccc----cceEEEEEecC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL-GSVVSTFKSHQ----STILAVAVLSD   79 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~----~~v~~~~~~~~   79 (392)
                      ..++.|+|+++.+.++.+.- ...|.--.|-.+.. |+-.+ +..|+-|+++. ..+.+.+..|.    ..|.....+++
T Consensus        85 g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~  161 (494)
T 1bpo_A           85 GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK  161 (494)
T ss_dssp             TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETTE-EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred             CCeEEEEchHHhhhhcceec-CCCceEEEecCCCe-EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCC
Confidence            35788888888777777763 44566667765543 44332 56799999864 34555565443    45777778888


Q ss_pred             CCEEEEEeC-------CCeEEEEEcCCceeeeecccceeEEE-EeCCC-----CEEEEecC---CCcEEEEeCCCCC-CC
Q psy17243         80 SRRVVTSDK-------AGVIAVWVADNAQLLYSALGPSKCLT-VTHNM-----KYIVSGDG---DNSLRIWPTSPQT-HK  142 (392)
Q Consensus        80 ~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~---d~~i~~~d~~~~~-~~  142 (392)
                      .+.++..+-       .|.+.+|..+.+.. +.+.++..+.. +-.++     ..++.+..   .+++++.++.... ..
T Consensus       162 ~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~  240 (494)
T 1bpo_A          162 QKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN  240 (494)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC
T ss_pred             CCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC
Confidence            887764432       36788888776532 22233332221 11111     23333333   3789999986431 11


Q ss_pred             Ccc-----eeee---ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEec
Q psy17243        143 DDE-----RFTV---SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       143 ~~~-----~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      ...     ....   ...+-..++..++.-..++.-+.-|.|++||+.++.++..-+-...+|...+.....+.+ ++..
T Consensus       241 ~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi-~~Vn  319 (494)
T 1bpo_A          241 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGI-IGVN  319 (494)
T ss_dssp             CCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEE-EEEE
T ss_pred             CCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcE-EEEc
Confidence            111     1111   123445678889888899999999999999999999988776666666655555333433 3444


Q ss_pred             CCCeEEEEECCCCcee
Q psy17243        215 KDSNLIVWDMETGGEE  230 (392)
Q Consensus       215 ~dg~i~iwd~~~~~~~  230 (392)
                      ..|.|.--.++....+
T Consensus       320 r~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          320 RKGQVLSVCVEEENII  335 (494)
T ss_dssp             TTCEEEEEEECTTTHH
T ss_pred             cCceEEEEEEccccch
Confidence            6777766666655444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.59  E-value=0.027  Score=47.84  Aligned_cols=216  Identities=7%  Similarity=-0.032  Sum_probs=118.7

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec----ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCce
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK----SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  101 (392)
                      ...+.++.|.+++..+++ +..|.| +...+.++.-....    .....+.++.|.+ + .++.++..+.|.. ..+.++
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCCC
Confidence            457899999877776664 456765 33334443322221    1244688999976 3 4444556665443 333333


Q ss_pred             eeee------cccceeEEEEeCCCCEEEEecCCCcEEE-EeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCC
Q psy17243        102 LLYS------ALGPSKCLTVTHNMKYIVSGDGDNSLRI-WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM  174 (392)
Q Consensus       102 ~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~~-~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  174 (392)
                      .-..      +......+.+.+++..++++ .++.|.. .|-  +..-..  ........+..+.+.+++.+++++. +|
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg--G~tW~~--~~~~~~~~~~~~~~~~~~~~~~~g~-~G  183 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDS--GKNWQA--LVQEAIGVMRNLNRSPSGEYVAVSS-RG  183 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESST--TSSEEE--EECSCCCCEEEEEECTTSCEEEEET-TS
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCC--CCCCEE--eecCCCcceEEEEEcCCCcEEEEEC-CC
Confidence            2221      12345566666666666555 4554432 221  111111  1123345688899999888777665 44


Q ss_pred             cEEE-EEc--CCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc----cccceeEEEEcC
Q psy17243        175 SLKV-WQV--VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG----HLGCVTCVKLAG  247 (392)
Q Consensus       175 ~i~i-~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~  247 (392)
                      .+.. .|-  .+.+.+.  ......+..+.+. +++.+++ ++.+|.+++.+.+.++.-..+..    ....+..+.+.+
T Consensus       184 ~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~-~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~  259 (327)
T 2xbg_A          184 SFYSTWEPGQTAWEPHN--RTTSRRLHNMGFT-PDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT  259 (327)
T ss_dssp             SEEEEECTTCSSCEEEE--CCSSSCEEEEEEC-TTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred             cEEEEeCCCCCceeECC--CCCCCccceeEEC-CCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence            4443 332  2223332  2345678888888 4555554 44678888775333433222221    223588899999


Q ss_pred             CCeEEEEcC
Q psy17243        248 DGTVAMSDL  256 (392)
Q Consensus       248 dg~~~~~~~  256 (392)
                      ++.+++.+.
T Consensus       260 ~~~~~~~g~  268 (327)
T 2xbg_A          260 PNEVWLAGG  268 (327)
T ss_dssp             SSCEEEEES
T ss_pred             CCEEEEEeC
Confidence            888888754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.58  E-value=0.016  Score=48.43  Aligned_cols=211  Identities=14%  Similarity=0.058  Sum_probs=105.8

Q ss_pred             CCCeEEEEe-CC-----CeEEEEeCCCCceeEE--ecccccceEEEEEecCCCEEEEEeCC-----CeEEEEEcCCce--
Q psy17243         37 NSIFAVSGS-ED-----NTAKVWGLTLGSVVST--FKSHQSTILAVAVLSDSRRVVTSDKA-----GVIAVWVADNAQ--  101 (392)
Q Consensus        37 ~~~~l~~~~-~d-----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~--  101 (392)
                      ++.+++.|+ .+     ..+.+||..+.+-...  +...... .+++ ..+++.++.|+.+     ..+.+||+.+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            445666666 32     4688999887653321  2111111 1222 2356666777654     468999988766  


Q ss_pred             -eee--ecccce-eEEEEeCCCCEEEEecCC-----CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243        102 -LLY--SALGPS-KCLTVTHNMKYIVSGDGD-----NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus       102 -~~~--~~~~~~-~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                       -..  ....+. ...+...++..++.|+.+     ..+.+||+.+..........  ....-.+++. .++++++.|+.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~-~~~~iyv~GG~  168 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ--TAREGAGLVV-ASGVIYCLGGY  168 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS--SCCBSCEEEE-ETTEEEEECCB
T ss_pred             eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC--CCcccceEEE-ECCEEEEECCC
Confidence             222  111111 111222356677777643     36888988754332221111  1111112222 26677777765


Q ss_pred             C-----CcEEEEEcCCCeEEEEEecCCCc-eeEEEEecCCCcEEEEecCC-----CeEEEEECCCCceee--eecccccc
Q psy17243        173 D-----MSLKVWQVVGGKLAQVLVGHTDH-VSCVAVAVTNKSLVVSGSKD-----SNLIVWDMETGGEEH--FLAGHLGC  239 (392)
Q Consensus       173 d-----g~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~  239 (392)
                      +     ..+.+||+.+.+-...-...... -.+++.  .++.+++.|+.+     ..+.+||+.+.+-..  .+......
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  246 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY  246 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence            4     46899999887644331111111 112222  256777777754     468999998765332  22211111


Q ss_pred             eeEEEEcCCCeEEEEcC
Q psy17243        240 VTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       240 v~~~~~~~dg~~~~~~~  256 (392)
                      ...+.  -++++++.+.
T Consensus       247 ~~~~~--~~~~i~v~GG  261 (301)
T 2vpj_A          247 VGATV--LRGRLYAIAG  261 (301)
T ss_dssp             CEEEE--ETTEEEEECC
T ss_pred             eeEEE--ECCEEEEEcC
Confidence            12222  2677777764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.56  E-value=0.029  Score=47.60  Aligned_cols=219  Identities=11%  Similarity=0.039  Sum_probs=118.4

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec---ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK---SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL  102 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  102 (392)
                      ...+.++.+.+ +..++ ++..+.|.. ..+.|+.-..+.   .+...+..+.+.+++..++.+ .++.|.. ..+.++.
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence            44688999986 44444 455665543 333344333322   233457788887776655544 4554432 1222322


Q ss_pred             ---ee-ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEE
Q psy17243        103 ---LY-SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV  178 (392)
Q Consensus       103 ---~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  178 (392)
                         +. .....+..+.+.+++.+++++...+..+-.|-. +..-...  .......+..+.+.++++.++ .+.+|.+++
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~  229 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAF  229 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEE
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEE
Confidence               11 122356678888888877776544333333321 1111111  123456788888988887554 455787777


Q ss_pred             EEcCCCeEEEEEe-c---CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec---ccccceeEEEEcCCCeE
Q psy17243        179 WQVVGGKLAQVLV-G---HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA---GHLGCVTCVKLAGDGTV  251 (392)
Q Consensus       179 ~d~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~dg~~  251 (392)
                      .+...++.-..+. .   +...+..+.+. +++.+++++. +|.| ++..+.++.-..+.   .....+..+.|.+++++
T Consensus       230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~-~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~  306 (327)
T 2xbg_A          230 SDPDNSENWGELLSPLRRNSVGFLDLAYR-TPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQG  306 (327)
T ss_dssp             EETTEEEEECCCBCTTSSCCSCEEEEEES-SSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEE
T ss_pred             ecCCCCCeeEeccCCcccCCcceEEEEec-CCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCce
Confidence            6422233222221 1   22357888888 4566666554 6766 44455454333333   22456788888877877


Q ss_pred             EEEcC
Q psy17243        252 AMSDL  256 (392)
Q Consensus       252 ~~~~~  256 (392)
                      ++.+.
T Consensus       307 ~~~G~  311 (327)
T 2xbg_A          307 FILGQ  311 (327)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            77653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.54  E-value=0.025  Score=47.70  Aligned_cols=216  Identities=10%  Similarity=0.050  Sum_probs=106.9

Q ss_pred             CeEEEEECCCcccee-eeccCCcCeeEEEecCCCCeEEEEeC----C-------CeEEEEeCCCCceeEEecccccc--e
Q psy17243          6 CLVNVWQMNSHELQS-TMEGHLNTVSCVAISPNSIFAVSGSE----D-------NTAKVWGLTLGSVVSTFKSHQST--I   71 (392)
Q Consensus         6 g~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~~----d-------g~v~iwd~~~~~~~~~~~~~~~~--v   71 (392)
                      ..+.+||..+.+-.. .+..............++.+++.|+.    +       ..+.+||..+.+-.. +.....+  -
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~   91 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCL   91 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEES
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhc
Confidence            468889988765332 22211122233333446777777773    1       127788888765422 2111111  1


Q ss_pred             EEEEEecCCCEEEEEeCC--------CeEEEEEcCCceeeee--cccce-eEEEEeCCCCEEEEecC------CCcEEEE
Q psy17243         72 LAVAVLSDSRRVVTSDKA--------GVIAVWVADNAQLLYS--ALGPS-KCLTVTHNMKYIVSGDG------DNSLRIW  134 (392)
Q Consensus        72 ~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~------d~~i~~~  134 (392)
                      .+++.. +++.++.|+.+        ..+.+||+.+.+-...  ...+. ...+...+++.++.|+.      -..+.+|
T Consensus        92 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y  170 (315)
T 4asc_A           92 FGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVY  170 (315)
T ss_dssp             CEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEE
T ss_pred             eeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEE
Confidence            122222 55566666632        4588999988753322  11111 12222346667777765      2468899


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCC-----cEEEEEcCCCeEEEEEecCCCc-eeEEEEecCCCc
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM-----SLKVWQVVGGKLAQVLVGHTDH-VSCVAVAVTNKS  208 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~  208 (392)
                      |+.+..........  ....-.+++. -++++++.|+.++     .+.+||+.+.+-...-...... -.+++..  ++.
T Consensus       171 d~~~~~W~~~~~~p--~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  245 (315)
T 4asc_A          171 DPKKFEWKELAPMQ--TARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGT  245 (315)
T ss_dssp             ETTTTEEEECCCCS--SCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred             eCCCCeEEECCCCC--CchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCE
Confidence            98754332221111  1111112222 2667777777544     5889999887544332111111 1122222  456


Q ss_pred             EEEEecCCC--------------eEEEEECCCCc
Q psy17243        209 LVVSGSKDS--------------NLIVWDMETGG  228 (392)
Q Consensus       209 ~l~~~~~dg--------------~i~iwd~~~~~  228 (392)
                      +++.|+.++              .+.+||+.+.+
T Consensus       246 l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          246 LYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            666666532              35667766543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.47  E-value=0.016  Score=50.20  Aligned_cols=142  Identities=14%  Similarity=0.082  Sum_probs=94.6

Q ss_pred             cCCCCeEEEEeCCCeEEEEeCCCCceeEEeccc----ccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee--------
Q psy17243         35 SPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH----QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL--------  102 (392)
Q Consensus        35 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------  102 (392)
                      +.++..++.+ .++.||.-++......+.++..    -..|..+..+|+|++|+..+. ..|.|-.+..+..        
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            4456656655 3578888888755555555532    236888999999999988864 4688877763210        


Q ss_pred             ----e--ee-------cccceeEEEEeC---CCCEEEEecCCCcEEEEeCCCCCCCCcceee--------eccccceEEE
Q psy17243        103 ----L--YS-------ALGPSKCLTVTH---NMKYIVSGDGDNSLRIWPTSPQTHKDDERFT--------VSHSEEITCF  158 (392)
Q Consensus       103 ----~--~~-------~~~~~~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~~~~~v~~~  158 (392)
                          .  ..       ...++..+.|+|   .+..|++-..|+.|++||+........ ...        ......|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence                0  11       124678899999   456899999999999999986322211 110        1123678899


Q ss_pred             EEEcCCCEEEEee--CCCcEEEE
Q psy17243        159 TVTWDSQYLITGS--RDMSLKVW  179 (392)
Q Consensus       159 ~~~~~~~~l~~~~--~dg~i~i~  179 (392)
                      +|..++-.|+..+  .+|.|+-.
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEcCCCcEEEEEecCCCCCEEEE
Confidence            9999876666644  77877654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.47  E-value=0.071  Score=49.67  Aligned_cols=203  Identities=12%  Similarity=0.018  Sum_probs=127.1

Q ss_pred             cCeeEEEecCCCCeEEEE-eCCCeEEEEeCCCCceeEEecc------cccceEEEEEecCCCEEE-EEeCCCeEEEEEcC
Q psy17243         27 NTVSCVAISPNSIFAVSG-SEDNTAKVWGLTLGSVVSTFKS------HQSTILAVAVLSDSRRVV-TSDKAGVIAVWVAD   98 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~   98 (392)
                      ..+.+++|.+....|+-+ ...+.|+.++.+.......+..      ....+..+++...+..|+ +-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            457889999865555544 4567888888764433333322      234678999998876665 54567889999886


Q ss_pred             Ccee--e-eecccceeEEEEeCCCCEEEEecC-CC--cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC
Q psy17243         99 NAQL--L-YSALGPSKCLTVTHNMKYIVSGDG-DN--SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR  172 (392)
Q Consensus        99 ~~~~--~-~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  172 (392)
                      ....  + .........+++.|...+|+.... ..  .|...++...   ....+....-...+.+++.++.+.|+.+..
T Consensus       420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~---~~~~l~~~~l~~P~gla~D~~~~~LYw~D~  496 (628)
T 4a0p_A          420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT---EREVLFFSGLSKPIALALDSRLGKLFWADS  496 (628)
T ss_dssp             SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC---SCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC---CcEEEEeccCCCccEEEEeCCCCEEEEEeC
Confidence            5422  1 122345789999995545544433 22  5666666522   122222223446789999998777776654


Q ss_pred             -CCcEEEEEcCCCeEEEEEe-cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        173 -DMSLKVWQVVGGKLAQVLV-GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       173 -dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                       .+.|..+++.. ...+.+. ........++..  ++.++++-...+.|...|..+++....+..
T Consensus       497 ~~~~I~~~~~dG-~~r~~~~~~~~~~P~glav~--~~~ly~tD~~~~~i~~~~k~~G~~~~~i~~  558 (628)
T 4a0p_A          497 DLRRIESSDLSG-ANRIVLEDSNILQPVGLTVF--ENWLYWIDKQQQMIEKIDMTGREGRTKVQA  558 (628)
T ss_dssp             TTTEEEEEETTS-CSCEEEECSSCSCEEEEEEE--TTEEEEEETTTTEEEEEETTSSSCCEEEEC
T ss_pred             CCCEEEEEeCCC-CceEEEEcCCCCCcEEEEEE--CCEEEEEECCCCeEEEEECcCCCCcEEEec
Confidence             57899999854 3334443 333455677776  467777777788899999888876655543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0033  Score=53.19  Aligned_cols=184  Identities=13%  Similarity=0.047  Sum_probs=103.0

Q ss_pred             CccCCeEEEEECCCccceeeeccC-CcCeeEEEec--C-CCCeEEEE-eCCCeEEEEeCCCCceeEEeccc----ccceE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGH-LNTVSCVAIS--P-NSIFAVSG-SEDNTAKVWGLTLGSVVSTFKSH----QSTIL   72 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~--~-~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~----~~~v~   72 (392)
                      |+.||.|.-.|.++|+.+.+++.. ..++....-.  + ++..++.. +.||.|..++.++|.....+...    ..++.
T Consensus        16 ~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~   95 (339)
T 2be1_A           16 ADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLH   95 (339)
T ss_dssp             EETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEE
T ss_pred             EeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccc
Confidence            678999999999999999988753 1233221111  1 22333333 58999999999888554433311    11222


Q ss_pred             E---EEE-----ecCCCEEEEEeCCCeEEEEEcCCceeeeeccccee----------EEEEe-----CCCCEEEEecCCC
Q psy17243         73 A---VAV-----LSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK----------CLTVT-----HNMKYIVSGDGDN  129 (392)
Q Consensus        73 ~---~~~-----~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~~-----~~~~~l~~~~~d~  129 (392)
                      .   ...     ...+..+++++.+|.+...|+.+|+.+..+.....          |....     ..+..++.+..+.
T Consensus        96 ~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y  175 (339)
T 2be1_A           96 LKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIF  175 (339)
T ss_dssp             EECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEE
T ss_pred             cCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceE
Confidence            1   000     01456889999999999999999999887654211          22111     1235677776666


Q ss_pred             cEEEEeCCCCCCCCcceeeeccccceE-----EEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEE
Q psy17243        130 SLRIWPTSPQTHKDDERFTVSHSEEIT-----CFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQ  188 (392)
Q Consensus       130 ~i~~~d~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  188 (392)
                      .+.+.+ +++. .-...+..-....+.     +...+.|+.+ +.++.||.|.-+|..+++.+.
T Consensus       176 ~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          176 ELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             ECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            666665 2221 111110000000000     0001123555 557889999999998888764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.40  E-value=0.032  Score=47.91  Aligned_cols=193  Identities=12%  Similarity=0.063  Sum_probs=92.9

Q ss_pred             CCCeEEEEeC-C---------CeEEEEeCCCCceeEEeccc-ccceEEEEEecCCCEEEEEeCC----------------
Q psy17243         37 NSIFAVSGSE-D---------NTAKVWGLTLGSVVSTFKSH-QSTILAVAVLSDSRRVVTSDKA----------------   89 (392)
Q Consensus        37 ~~~~l~~~~~-d---------g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d----------------   89 (392)
                      ++++++.|+. +         ..+.+||+.+.+-...-... .......+...+++.++.|+.+                
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  144 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGK  144 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCC
Confidence            5666677765 2         46889998876543221111 1111111222467777777754                


Q ss_pred             -----------------------CeEEEEEcCCceeee--ecccce-e-EEEEeCCCCEEEEecC------CCcEEEEeC
Q psy17243         90 -----------------------GVIAVWVADNAQLLY--SALGPS-K-CLTVTHNMKYIVSGDG------DNSLRIWPT  136 (392)
Q Consensus        90 -----------------------~~i~iwd~~~~~~~~--~~~~~~-~-~~~~~~~~~~l~~~~~------d~~i~~~d~  136 (392)
                                             ..+.+||+.+.+-..  ....+. . ..+...++..++.|+.      ...+.+||+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          145 DSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             cccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEe
Confidence                                   578999998775432  222111 1 1222235666666653      345777876


Q ss_pred             --CCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC----------------------CcEEEEEcCCCeEE--EEE
Q psy17243        137 --SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD----------------------MSLKVWQVVGGKLA--QVL  190 (392)
Q Consensus       137 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~--~~~  190 (392)
                        .+.......... .........+...++++++.|+.+                      ..+.+||+.+.+-.  ..+
T Consensus       225 d~~~~~W~~~~~~~-~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  303 (357)
T 2uvk_A          225 TGNNLKWNKLAPVS-SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL  303 (357)
T ss_dssp             C---CEEEECCCSS-TTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC
T ss_pred             cCCCCcEEecCCCC-CCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC
Confidence              322211111110 011111111223356677777632                      25788998876432  222


Q ss_pred             ecCCCceeEEEEecCCCcEEEEecCCC------eEEEEECCCCceeeee
Q psy17243        191 VGHTDHVSCVAVAVTNKSLVVSGSKDS------NLIVWDMETGGEEHFL  233 (392)
Q Consensus       191 ~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~  233 (392)
                      ........++.   .++.+++.|+.++      .|.++++++++.+...
T Consensus       304 p~~r~~~~~~~---~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          304 SQGRAYGVSLP---WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             SSCCBSSEEEE---ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             CCCcccceeEE---eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            22111112222   3567777777542      3666788887766543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.39  E-value=0.068  Score=53.50  Aligned_cols=174  Identities=10%  Similarity=0.125  Sum_probs=109.4

Q ss_pred             CeEEEEECCCccceeeecc-CCcCeeEEEe---cCC-CCeEEEEe----------CCCeEEEEeCCCCceeEEec-cccc
Q psy17243          6 CLVNVWQMNSHELQSTMEG-HLNTVSCVAI---SPN-SIFAVSGS----------EDNTAKVWGLTLGSVVSTFK-SHQS   69 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~-h~~~v~~~~~---~~~-~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~-~~~~   69 (392)
                      +.|++.|..+++.+..++- ....+.+++.   ..+ ..+|+.|.          ..|.|.+|++..++.....+ ..++
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            4688999888887765542 2334555553   322 46888775          34889999987543322211 2467


Q ss_pred             ceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee-c--ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcce
Q psy17243         70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS-A--LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER  146 (392)
Q Consensus        70 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  146 (392)
                      +|++++-. +| +|+++- ...+++|++...+.+.. .  ...+..+.....++++++|..-..+.++..+.....-...
T Consensus       887 ~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~  963 (1158)
T 3ei3_A          887 AVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI  963 (1158)
T ss_dssp             CEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred             cCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence            88888765 35 444443 57899999987765441 1  1112233344467899999988888887654332222222


Q ss_pred             eeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC
Q psy17243        147 FTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                      ........++++.+-.+ ..++.+..+|.+.++....
T Consensus       964 a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          964 ARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred             EeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence            23345677888888755 4778889999999987643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.32  E-value=0.06  Score=45.76  Aligned_cols=233  Identities=14%  Similarity=0.134  Sum_probs=133.2

Q ss_pred             eeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCcee--EEe----cccccceEEEEEecC---CCEEEEE---eC
Q psy17243         21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV--STF----KSHQSTILAVAVLSD---SRRVVTS---DK   88 (392)
Q Consensus        21 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~   88 (392)
                      .+...-..-+.|+|.|+|.++++--..|.|++++..+++..  ..+    .........|+++|+   +..|++.   ..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            34334456789999999987776655899999987666542  222    123456899999995   3444443   24


Q ss_pred             CCeEEEEEcCCc----------eeee-ecc----cceeEEEEeCCCCEEEEecC-------------CCcEEEEeCCCCC
Q psy17243         89 AGVIAVWVADNA----------QLLY-SAL----GPSKCLTVTHNMKYIVSGDG-------------DNSLRIWPTSPQT  140 (392)
Q Consensus        89 d~~i~iwd~~~~----------~~~~-~~~----~~~~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~  140 (392)
                      ++.|.-|.+..+          +.+. ...    .....+.|.|++.+.++.+.             .|.|.-++....-
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            456666666541          1121 111    12346999999987666432             3566666654210


Q ss_pred             CC-----CcceeeeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCe------------------EEEEEecCCCc
Q psy17243        141 HK-----DDERFTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGK------------------LAQVLVGHTDH  196 (392)
Q Consensus       141 ~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------------~~~~~~~~~~~  196 (392)
                      ..     ....+..++ .....++|+|++.+.++-. .++.=.|--+..+.                  ++..+..+...
T Consensus       186 p~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a  264 (347)
T 3das_A          186 APGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS  264 (347)
T ss_dssp             CTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred             cCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence            00     111222233 3456789999876554432 22222222222221                  22333322235


Q ss_pred             eeEEEEecCCCcEEEEecCCCeEEEEECCCCce----eeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        197 VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE----EHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       197 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ...++|.  ++.++...-..+.|....+.....    ...+.+....+..++..|||.+.+...
T Consensus       265 p~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          265 PSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            5677776  466777666677777777664432    223444456899999999999888765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.31  E-value=0.039  Score=46.30  Aligned_cols=211  Identities=12%  Similarity=0.082  Sum_probs=104.8

Q ss_pred             CCCeEEEEeCC----CeEEEEeCCCCceeEE--ecccccceEEEEEecCCCEEEEEeC----C-----CeEEEEEcCCce
Q psy17243         37 NSIFAVSGSED----NTAKVWGLTLGSVVST--FKSHQSTILAVAVLSDSRRVVTSDK----A-----GVIAVWVADNAQ  101 (392)
Q Consensus        37 ~~~~l~~~~~d----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----d-----~~i~iwd~~~~~  101 (392)
                      ++.+++.|+.+    ..+.+||..+.+-...  +...... .+++.. +++.++.|+.    +     ..+.+||+.+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            55666666632    4688999887654322  1111111 122222 5666666664    2     468889988775


Q ss_pred             eeeec--ccce-eEEEEeCCCCEEEEecCC-----CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC
Q psy17243        102 LLYSA--LGPS-KCLTVTHNMKYIVSGDGD-----NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD  173 (392)
Q Consensus       102 ~~~~~--~~~~-~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  173 (392)
                      -....  ..+- ...+...+++.++.|+.+     ..+.+||+.+............ ... .+++.. ++++++.|+.+
T Consensus       102 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~-~~~~~~-~~~iyv~GG~~  178 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-RIG-VGVAVL-NRLLYAVGGFD  178 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-CBS-CEEEEE-TTEEEEECCBC
T ss_pred             EeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc-ccc-eEEEEE-CCEEEEEeCCC
Confidence            43221  1111 111122266677776643     4688898875433222111111 111 122222 56677777654


Q ss_pred             -----CcEEEEEcCCCeEEEEEecCC-CceeEEEEecCCCcEEEEecCC-----CeEEEEECCCCceee--eecccccce
Q psy17243        174 -----MSLKVWQVVGGKLAQVLVGHT-DHVSCVAVAVTNKSLVVSGSKD-----SNLIVWDMETGGEEH--FLAGHLGCV  240 (392)
Q Consensus       174 -----g~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v  240 (392)
                           ..+.+||+.+.+-...-.... ..-.+++..  ++.+++.|+.+     ..+.+||+.+.+-..  .++..... 
T Consensus       179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-  255 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-  255 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-
T ss_pred             CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc-
Confidence                 468999998775432211111 111122232  56777777654     569999998765332  12111111 


Q ss_pred             eEEEEcCCCeEEEEcC
Q psy17243        241 TCVKLAGDGTVAMSDL  256 (392)
Q Consensus       241 ~~~~~~~dg~~~~~~~  256 (392)
                      .+++. -++++++.+.
T Consensus       256 ~~~~~-~~~~i~v~GG  270 (308)
T 1zgk_A          256 LGITV-HQGRIYVLGG  270 (308)
T ss_dssp             CEEEE-ETTEEEEECC
T ss_pred             eEEEE-ECCEEEEEcC
Confidence            12222 2677777765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.30  E-value=0.055  Score=45.29  Aligned_cols=209  Identities=8%  Similarity=0.018  Sum_probs=104.6

Q ss_pred             CeEEEEeC--CCeEEEEeCCCCceeEE--ecccccceEEEEEecCCCEEEEEeCC----CeEEEEEcCCceeeee--ccc
Q psy17243         39 IFAVSGSE--DNTAKVWGLTLGSVVST--FKSHQSTILAVAVLSDSRRVVTSDKA----GVIAVWVADNAQLLYS--ALG  108 (392)
Q Consensus        39 ~~l~~~~~--dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~--~~~  108 (392)
                      .+++.|+.  ...+.+||..+.+-...  +......-..+.  -+++.++.|+.+    ..+.+||+.+.+-...  ...
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34555654  35788999887754322  211111112222  256666777654    6788899988754322  211


Q ss_pred             ce-eEEEEeCCCCEEEEecCC------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC---------
Q psy17243        109 PS-KCLTVTHNMKYIVSGDGD------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR---------  172 (392)
Q Consensus       109 ~~-~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------  172 (392)
                      +. ...+...++..++.|+.+      ..+.+||..+..........  ....-.+++. -++++++.|+.         
T Consensus        91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML--TQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS--SCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred             cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc--CCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence            11 112222366677777654      46888998754322211111  1111112222 25666666653         


Q ss_pred             CCcEEEEEcCCCeEEEEEecCCCc-eeEEEEecCCCcEEEEecCC-----CeEEEEECCCCceee--eecccccceeEEE
Q psy17243        173 DMSLKVWQVVGGKLAQVLVGHTDH-VSCVAVAVTNKSLVVSGSKD-----SNLIVWDMETGGEEH--FLAGHLGCVTCVK  244 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~  244 (392)
                      -..+.+||+.+.+-...-...... -.+++..  ++.+++.|+.+     ..+.+||+.+.+-..  .+.........+.
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence            345889999887543321111111 1222232  56677777654     358899998764322  2221111222222


Q ss_pred             EcCCCeEEEEcC
Q psy17243        245 LAGDGTVAMSDL  256 (392)
Q Consensus       245 ~~~dg~~~~~~~  256 (392)
                      +  ++++++.+.
T Consensus       246 ~--~~~i~v~GG  255 (306)
T 3ii7_A          246 V--GSIVYVLAG  255 (306)
T ss_dssp             E--TTEEEEEEC
T ss_pred             E--CCEEEEEeC
Confidence            2  667777665

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.30  E-value=0.044  Score=45.78  Aligned_cols=184  Identities=13%  Similarity=0.097  Sum_probs=93.0

Q ss_pred             CCeEEEEeCC----CeEEEEeCCCCceeEE--ecccccceEEEEEecCCCEEEEEeCC-----CeEEEEEcCCceeeeec
Q psy17243         38 SIFAVSGSED----NTAKVWGLTLGSVVST--FKSHQSTILAVAVLSDSRRVVTSDKA-----GVIAVWVADNAQLLYSA  106 (392)
Q Consensus        38 ~~~l~~~~~d----g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~  106 (392)
                      +.+++.|+.+    ..+.+||+.+.+-...  +...... .+++. -+++.++.|+.+     ..+.+||..+.+-....
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3455556543    4588899887653322  1111111 12222 256666666644     35888998877543221


Q ss_pred             --ccc-eeEEEEeCCCCEEEEecCCC-----cEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC-----
Q psy17243        107 --LGP-SKCLTVTHNMKYIVSGDGDN-----SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-----  173 (392)
Q Consensus       107 --~~~-~~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----  173 (392)
                        ..+ ....+...++..++.|+.++     .+.+||+.+..........  ....-.+++. -++++++.|+.+     
T Consensus        94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~-~~~~iyv~GG~~~~~~~  170 (302)
T 2xn4_A           94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN--TRRSSVGVGV-VGGLLYAVGGYDVASRQ  170 (302)
T ss_dssp             CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS--SCCBSCEEEE-ETTEEEEECCEETTTTE
T ss_pred             CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC--CcccCceEEE-ECCEEEEEeCCCCCCCc
Confidence              111 11112223566777776543     5778888654322211111  1111112222 256666666542     


Q ss_pred             --CcEEEEEcCCCeEEEEEecCC-CceeEEEEecCCCcEEEEecCC-----CeEEEEECCCCc
Q psy17243        174 --MSLKVWQVVGGKLAQVLVGHT-DHVSCVAVAVTNKSLVVSGSKD-----SNLIVWDMETGG  228 (392)
Q Consensus       174 --g~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  228 (392)
                        ..+.+||+.+.+-...-.... ..-.+++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             cccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence              458899998875433211111 111222232  56777777754     368999998765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.30  E-value=0.073  Score=46.22  Aligned_cols=227  Identities=11%  Similarity=0.113  Sum_probs=135.5

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEE
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV   83 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   83 (392)
                      .+..|.|.|+.++.....-.   -.--+.-.+|..+.||.=. ..++.|+|+++.+.++.+.- ...|.-=.|..+. .|
T Consensus        46 ~~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l  119 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TV  119 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EE
T ss_pred             CCCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eE
Confidence            34478888887755442211   1122455688888777654 67999999999999988874 4566677776544 44


Q ss_pred             EEEeCCCeEEEEEcCCce-e--eeec-----ccceeEEEEeCCCCEEEEecC-------CCcEEEEeCCCCCCCCcceee
Q psy17243         84 VTSDKAGVIAVWVADNAQ-L--LYSA-----LGPSKCLTVTHNMKYIVSGDG-------DNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~~~~-~--~~~~-----~~~~~~~~~~~~~~~l~~~~~-------d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      +..+ +..|+-|+++... +  +...     ...+-....+++.++++..+-       .|.+.+|..+.    ......
T Consensus       120 ~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er----~~sQ~i  194 (494)
T 1bpo_A          120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----KVSQPI  194 (494)
T ss_dssp             EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT----CCEEEE
T ss_pred             EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc----cccchh
Confidence            4443 5679999997532 2  2211     124455667888888775432       47788998852    223333


Q ss_pred             eccccceEEEEEEcC---CCEEEEeeC---CCcEEEEEcCCC--------eEEEE-Ee---cCCCceeEEEEecCCCcEE
Q psy17243        149 VSHSEEITCFTVTWD---SQYLITGSR---DMSLKVWQVVGG--------KLAQV-LV---GHTDHVSCVAVAVTNKSLV  210 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~---~~~l~~~~~---dg~i~i~d~~~~--------~~~~~-~~---~~~~~v~~~~~~~~~~~~l  210 (392)
                      .+|...-..+.+..+   .+++..+..   .+.++|.++...        +.... +.   .-.+-..++..+ +...++
T Consensus       195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs-~kygvi  273 (494)
T 1bpo_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-EKHDVV  273 (494)
T ss_dssp             CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE-TTTTEE
T ss_pred             eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec-ccCCEE
Confidence            455443333322211   113333332   378999998542        11111 11   113344577888 555667


Q ss_pred             EEecCCCeEEEEECCCCceeeeecccccceeE
Q psy17243        211 VSGSKDSNLIVWDMETGGEEHFLAGHLGCVTC  242 (392)
Q Consensus       211 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  242 (392)
                      ..-+.-|.|++||++++.++..-+-....|..
T Consensus       274 yviTK~G~i~lyDleTgt~i~~nrIs~~~iF~  305 (494)
T 1bpo_A          274 FLITKYGYIHLYDLETGTCIYMNRISGETIFV  305 (494)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             EEEecCceEEEEecccceeeeeecccCCceEE
Confidence            77788999999999999988765544444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.30  E-value=0.067  Score=45.69  Aligned_cols=181  Identities=9%  Similarity=0.088  Sum_probs=103.3

Q ss_pred             eEEEEEecCCCEEEEE------------eCCCeEEEEEcCCc--ee--eeecc-------cceeEEEEeC--CCC-EEEE
Q psy17243         71 ILAVAVLSDSRRVVTS------------DKAGVIAVWVADNA--QL--LYSAL-------GPSKCLTVTH--NMK-YIVS  124 (392)
Q Consensus        71 v~~~~~~~~~~~l~~~------------~~d~~i~iwd~~~~--~~--~~~~~-------~~~~~~~~~~--~~~-~l~~  124 (392)
                      ...+...|+|..++++            ..+|.|.++|+.+.  +.  +....       .....+.+.+  ++. +|++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            4455666766444443            26899999998742  21  21111       1334566544  343 3444


Q ss_pred             e-cC--CCcEEEEeCCCCCCCCcceeee--ccccceEEEEEEcCCCEEEEee-----------------CCCcEEEEEcC
Q psy17243        125 G-DG--DNSLRIWPTSPQTHKDDERFTV--SHSEEITCFTVTWDSQYLITGS-----------------RDMSLKVWQVV  182 (392)
Q Consensus       125 ~-~~--d~~i~~~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~  182 (392)
                      + ..  +..|.+|++.............  ..-...+.+.+.++|.+.++..                 ..|.|..+|. 
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence            4 33  5678888776432221111111  1234578999999998777654                 1245555654 


Q ss_pred             CCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC-Ccee--eeecccccceeEEEEcC-CCeEEEEc
Q psy17243        183 GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET-GGEE--HFLAGHLGCVTCVKLAG-DGTVAMSD  255 (392)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~--~~~~~~~~~v~~~~~~~-dg~~~~~~  255 (392)
                       ++. ..+...-...+.++|+|++..+.++-+..+.|..|++.. ++..  ..+ ...+....+++.+ +|.+.+.+
T Consensus       211 -~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          211 -NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             -TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred             -CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence             332 222223345689999955555666666789999999863 3321  233 2345678899999 59887754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.27  E-value=0.074  Score=45.63  Aligned_cols=226  Identities=12%  Similarity=0.073  Sum_probs=125.2

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEE---e----cccccceEEEEEecC---CCEEEEEe-C-------
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST---F----KSHQSTILAVAVLSD---SRRVVTSD-K-------   88 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~~~~-~-------   88 (392)
                      ..-..|+|.|+|++|+.+...|.|++++.+ ++....   +    .........++++|+   +..|.+.. .       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            456799999999834455568999999853 432211   1    112345789999996   45555443 2       


Q ss_pred             CCeEEEEEcCCc-------eeee-ecc------cceeEEEEeCCCCEEEEecC-------------CCcEEEEeCCCCCC
Q psy17243         89 AGVIAVWVADNA-------QLLY-SAL------GPSKCLTVTHNMKYIVSGDG-------------DNSLRIWPTSPQTH  141 (392)
Q Consensus        89 d~~i~iwd~~~~-------~~~~-~~~------~~~~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~~~  141 (392)
                      ...|..+++...       +.+. ...      .....+.|.|++.+.++.+.             .|.|.-++....-.
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            235666666432       1121 111      11357999999965555332             24677777653200


Q ss_pred             ----------CCcceeeeccccceEEEEEEcCCCEEEEeeCCC--cEEEEEcCCC-------------------------
Q psy17243        142 ----------KDDERFTVSHSEEITCFTVTWDSQYLITGSRDM--SLKVWQVVGG-------------------------  184 (392)
Q Consensus       142 ----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~-------------------------  184 (392)
                                ........++ .....++|.|....|+++....  .=.|.-+..+                         
T Consensus       177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~  255 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE  255 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred             CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence                      0111122222 4467899999434455543321  1122111111                         


Q ss_pred             ------eEEEEEecCCCceeEEEEecC------CCcEEEEecCCCeEEEEECCCCceeee--e-cccccceeEEEEcCCC
Q psy17243        185 ------KLAQVLVGHTDHVSCVAVAVT------NKSLVVSGSKDSNLIVWDMETGGEEHF--L-AGHLGCVTCVKLAGDG  249 (392)
Q Consensus       185 ------~~~~~~~~~~~~v~~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~--~-~~~~~~v~~~~~~~dg  249 (392)
                            .++..+. +......++|...      ++.++++.-..+.|...++..++....  + ......+..+++.|||
T Consensus       256 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG  334 (353)
T 2g8s_A          256 IVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG  334 (353)
T ss_dssp             SCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred             CCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence                  1122232 2235667777521      367777777788888888876543322  2 2233478999999999


Q ss_pred             eEEEEc
Q psy17243        250 TVAMSD  255 (392)
Q Consensus       250 ~~~~~~  255 (392)
                      .+.+..
T Consensus       335 ~lyv~t  340 (353)
T 2g8s_A          335 YLYVLT  340 (353)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            987753

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.21  E-value=0.17  Score=48.53  Aligned_cols=218  Identities=12%  Similarity=0.133  Sum_probs=123.9

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS  105 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  105 (392)
                      ...|.++....++ .|..|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -+..+|..+++....
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~  136 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF  136 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence            3568888777766 466666665 789998776443211112335776654 344 56666666 588889876654321


Q ss_pred             -------cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeec---cccceEEEEEEcCCCEEEEeeCCCc
Q psy17243        106 -------ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS---HSEEITCFTVTWDSQYLITGSRDMS  175 (392)
Q Consensus       106 -------~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~  175 (392)
                             ....+.++....++...+ ++.+ -|..|+........ ......   ....|.++...+++..|..|+. +-
T Consensus       137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G  212 (758)
T 3ott_A          137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY  212 (758)
T ss_dssp             CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE
T ss_pred             ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CC
Confidence                   012456666666666444 5544 47778765322110 000000   1234788877777776666764 45


Q ss_pred             EEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec-------ccccceeEEEEcCC
Q psy17243        176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA-------GHLGCVTCVKLAGD  248 (392)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~d  248 (392)
                      +..+|..+++...........|.++... .++.+.+ |+. +-+.+++..+++......       -....|.++....+
T Consensus       213 l~~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~  289 (758)
T 3ott_A          213 LFQYFPSTGQIKQTEAFHNNSIKSLALD-GNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE  289 (758)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEEEEEEEC-TTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT
T ss_pred             CeEEcCCCCeEEeccCCCCCeEEEEEEc-CCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC
Confidence            8889987765432211123457777766 4555544 443 458888877654332111       11235888888777


Q ss_pred             CeEEEEc
Q psy17243        249 GTVAMSD  255 (392)
Q Consensus       249 g~~~~~~  255 (392)
                      |.+-+..
T Consensus       290 g~lWiGT  296 (758)
T 3ott_A          290 HNIWLGT  296 (758)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEe
Confidence            7655443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.21  E-value=0.084  Score=45.08  Aligned_cols=178  Identities=8%  Similarity=0.138  Sum_probs=104.9

Q ss_pred             cCCeEEEEECCCcc-ceee--ecc-----CCcCeeEEEecC--CCC-eEEEE-eC--CCeEEEEeCCCCc----eeEEec
Q psy17243          4 MDCLVNVWQMNSHE-LQST--MEG-----HLNTVSCVAISP--NSI-FAVSG-SE--DNTAKVWGLTLGS----VVSTFK   65 (392)
Q Consensus         4 ~dg~i~vwd~~~~~-~~~~--~~~-----h~~~v~~~~~~~--~~~-~l~~~-~~--dg~v~iwd~~~~~----~~~~~~   65 (392)
                      .+|.|.++|.++.. ....  +.+     ..-....+.+.+  ++. +|+.+ ..  +.+|.+|+++...    .+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            58899999987321 1122  222     223566777755  343 44444 22  4678888776532    233333


Q ss_pred             cc-ccceEEEEEecCCCEEEEEe-----------------CCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEec-
Q psy17243         66 SH-QSTILAVAVLSDSRRVVTSD-----------------KAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGD-  126 (392)
Q Consensus        66 ~~-~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  126 (392)
                      +. -...+.+.+.++|.+.++..                 ..|.|..+|..+-+.+..-....+.++++|+++.++++. 
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt  240 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAEL  240 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEeC
Confidence            22 23578999999998777654                 124566666543333333334568999999998887765 


Q ss_pred             CCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEc-CCCEEEEeeCC-CcEEEEEcC
Q psy17243        127 GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW-DSQYLITGSRD-MSLKVWQVV  182 (392)
Q Consensus       127 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-g~i~i~d~~  182 (392)
                      ..+.|..|++............ ......-.+++.+ +|++.+++..+ +.|..|+..
T Consensus       241 ~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          241 LAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             CCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            4789999998643222222222 2345667888988 58877766533 345555543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.18  E-value=0.083  Score=44.48  Aligned_cols=214  Identities=11%  Similarity=0.096  Sum_probs=103.6

Q ss_pred             eEEEEECCCcccee-eeccCCcCeeEEEecCCCCeEEEEeC----CC-------eEEEEeCCCCceeEE--ecccccceE
Q psy17243          7 LVNVWQMNSHELQS-TMEGHLNTVSCVAISPNSIFAVSGSE----DN-------TAKVWGLTLGSVVST--FKSHQSTIL   72 (392)
Q Consensus         7 ~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~~----dg-------~v~iwd~~~~~~~~~--~~~~~~~v~   72 (392)
                      .+.+||..+.+-.. .+..............++.+++.|+.    ++       .+.+||..+.+-...  +...... .
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~  103 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-F  103 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-C
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-c
Confidence            37788887665433 11111112222233446677777773    12       177888877654322  1111111 1


Q ss_pred             EEEEecCCCEEEEEeCC-------CeEEEEEcCCceeeee--cccce-eEEEEeCCCCEEEEecC------CCcEEEEeC
Q psy17243         73 AVAVLSDSRRVVTSDKA-------GVIAVWVADNAQLLYS--ALGPS-KCLTVTHNMKYIVSGDG------DNSLRIWPT  136 (392)
Q Consensus        73 ~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~--~~~~~-~~~~~~~~~~~l~~~~~------d~~i~~~d~  136 (392)
                      +++.. +++.++.|+.+       ..+.+||+.+.+-...  ...+. ...+...++..++.|+.      ...+.+||+
T Consensus       104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~  182 (318)
T 2woz_A          104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP  182 (318)
T ss_dssp             EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEET
T ss_pred             ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcC
Confidence            22222 56666777653       3578888887654332  22111 11222246667777754      245889998


Q ss_pred             CCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC-----CcEEEEEcCCCeEEEE--EecCCCceeEEEEecCCCcE
Q psy17243        137 SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-----MSLKVWQVVGGKLAQV--LVGHTDHVSCVAVAVTNKSL  209 (392)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~  209 (392)
                      .+..........  ....-.+++. -++++++.|+.+     ..+.+||+.+.+-...  +...... .+++.  .++.+
T Consensus       183 ~~~~W~~~~~~p--~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~--~~~~i  256 (318)
T 2woz_A          183 KKGDWKDLAPMK--TPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS-ISLVS--LAGSL  256 (318)
T ss_dssp             TTTEEEEECCCS--SCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-CEEEE--ETTEE
T ss_pred             CCCEEEECCCCC--CCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-eEEEE--ECCEE
Confidence            754322211111  1111112222 256677777643     3577899887653322  1111111 12222  24667


Q ss_pred             EEEecCC--------------CeEEEEECCCCc
Q psy17243        210 VVSGSKD--------------SNLIVWDMETGG  228 (392)
Q Consensus       210 l~~~~~d--------------g~i~iwd~~~~~  228 (392)
                      ++.|+.+              ..+.+||+.+.+
T Consensus       257 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          257 YAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             EEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             EEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            7776643              346667766544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.01  E-value=0.14  Score=43.94  Aligned_cols=185  Identities=11%  Similarity=0.066  Sum_probs=93.9

Q ss_pred             CcCeeEEEecCC---CCeEEEEeC-C-----CeEEEEeCCCCce------eEEec---ccccceEEEEEecCCCEEEEEe
Q psy17243         26 LNTVSCVAISPN---SIFAVSGSE-D-----NTAKVWGLTLGSV------VSTFK---SHQSTILAVAVLSDSRRVVTSD   87 (392)
Q Consensus        26 ~~~v~~~~~~~~---~~~l~~~~~-d-----g~v~iwd~~~~~~------~~~~~---~~~~~v~~~~~~~~~~~l~~~~   87 (392)
                      ......|+++|+   +..|+.+.. .     +.|..++...+..      +..+.   ........++|.|+|...++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            456789999998   445554433 2     5788888764421      11232   1112236899999997666543


Q ss_pred             C-------------CCeEEEEEcCCc---------------eeeeecccceeEEEEeC-CCCEEEEecCCCc--------
Q psy17243         88 K-------------AGVIAVWVADNA---------------QLLYSALGPSKCLTVTH-NMKYIVSGDGDNS--------  130 (392)
Q Consensus        88 ~-------------d~~i~iwd~~~~---------------~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~--------  130 (392)
                      .             .|.|.-++.+..               +....-......++++| ++.++++-.....        
T Consensus       154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~de  233 (352)
T 2ism_A          154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDE  233 (352)
T ss_dssp             CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCE
T ss_pred             CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeE
Confidence            2             245666665431               11111112345788999 5554444332222        


Q ss_pred             EEEEeCCCCC-------------CCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE------EEEEe
Q psy17243        131 LRIWPTSPQT-------------HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL------AQVLV  191 (392)
Q Consensus       131 i~~~d~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~  191 (392)
                      |.+.......             ..... ...........++| .+++++++....+.|...++.....      ...+.
T Consensus       234 i~~i~~G~nyGwp~~~g~~~~~~~~~p~-~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~  311 (352)
T 2ism_A          234 VNLIVPGGNYGWPRVVGRGNDPRYRDPL-YFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL  311 (352)
T ss_dssp             EEEECTTCBCCTTTCCSCCCCTTSCCCS-EECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEeccCCcCCCCcccCCCCCCCCcCCe-EecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec
Confidence            4333221100             00111 11122334567777 4676666666667788877753321      12222


Q ss_pred             cCCCceeEEEEecCCCcEEEEe
Q psy17243        192 GHTDHVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       192 ~~~~~v~~~~~~~~~~~~l~~~  213 (392)
                      .....+..+++.| ++.++++.
T Consensus       312 ~~~~rp~~v~~~p-dG~lyv~~  332 (352)
T 2ism_A          312 SGFGRLREVQVGP-DGALYVTT  332 (352)
T ss_dssp             ESSCCEEEEEECT-TSCEEEEE
T ss_pred             ccCCCeeEEEECC-CCcEEEEE
Confidence            2235678888884 45554443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.95  E-value=0.036  Score=43.27  Aligned_cols=101  Identities=6%  Similarity=-0.116  Sum_probs=64.1

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCcee------EEecc-cccceEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV------STFKS-HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADN   99 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~------~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~   99 (392)
                      ..+..++|+|++.+.++  .+|.+.-.+..+....      ..+-. --....++.|.|++.+.++  .||.|+-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            46889999999885555  6787766665442211      11110 1112478899999987777  569888887633


Q ss_pred             cee---------eee-cccceeEEEEeCCCCEEEEecCCCcEEE
Q psy17243        100 AQL---------LYS-ALGPSKCLTVTHNMKYIVSGDGDNSLRI  133 (392)
Q Consensus       100 ~~~---------~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~~  133 (392)
                      ...         +.. --..+..+.+.|+|.+.++.  ++.++-
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            211         111 11366899999999888877  676543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.88  E-value=0.069  Score=46.27  Aligned_cols=131  Identities=14%  Similarity=0.085  Sum_probs=89.3

Q ss_pred             cCCeEEEEECCCccceeeeccC----CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc------------eeEEecc-
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGH----LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS------------VVSTFKS-   66 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------------~~~~~~~-   66 (392)
                      .++.||.-++.....-+.++..    -..|..+..+|+|++||..+ +..|.|-.+..+.            ..+.+.- 
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence            3567777777644444444432    23688899999999998886 4589998887332            1123322 


Q ss_pred             -----cccceEEEEEecC---CCEEEEEeCCCeEEEEEcCCce--e--eee----cc-----cceeEEEEeCCCCEEEEe
Q psy17243         67 -----HQSTILAVAVLSD---SRRVVTSDKAGVIAVWVADNAQ--L--LYS----AL-----GPSKCLTVTHNMKYIVSG  125 (392)
Q Consensus        67 -----~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~--~--~~~----~~-----~~~~~~~~~~~~~~l~~~  125 (392)
                           ...+|..+.|+|-   +..|++-..|+.|++||+....  +  +..    +.     ..+.+++|..++-.|++.
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl  197 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCL  197 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEE
Confidence                 2467999999996   4589999999999999998621  1  111    11     356788999888877775


Q ss_pred             c--CCCcEEEEe
Q psy17243        126 D--GDNSLRIWP  135 (392)
Q Consensus       126 ~--~d~~i~~~d  135 (392)
                      +  ..|.|+-.-
T Consensus       198 ~~t~~GDIYAlc  209 (452)
T 3pbp_A          198 NTTEGGDIFAFY  209 (452)
T ss_dssp             ECTTSCEEEEES
T ss_pred             ecCCCCCEEEEC
Confidence            4  778876553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.68  E-value=0.23  Score=41.69  Aligned_cols=182  Identities=8%  Similarity=0.019  Sum_probs=94.0

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeE-EecccccceEEEEEecCCCEEEEEeC-----C------CeEEEEEcCCceeeee--
Q psy17243         40 FAVSGSEDNTAKVWGLTLGSVVS-TFKSHQSTILAVAVLSDSRRVVTSDK-----A------GVIAVWVADNAQLLYS--  105 (392)
Q Consensus        40 ~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-----d------~~i~iwd~~~~~~~~~--  105 (392)
                      +++.|+  ..+.+||..+.+-.. .+..............+++.++.|+.     .      ..+..||..+.+-...  
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344555  579999998877533 22211122333333457777777773     1      1277888887754322  


Q ss_pred             ccccee-EEEEeCCCCEEEEecCC--------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC----
Q psy17243        106 ALGPSK-CLTVTHNMKYIVSGDGD--------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR----  172 (392)
Q Consensus       106 ~~~~~~-~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----  172 (392)
                      ...+-. .....-++..++.|+.+        ..+.+||+.+..........  ....-.+++. .++++++.|+.    
T Consensus        85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~-~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP--YVVYGHTVLS-HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred             CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC--CcccceeEEE-ECCEEEEEeCCCCCC
Confidence            111111 11122256666676632        46888998754322221111  1111112222 35667777765    


Q ss_pred             --CCcEEEEEcCCCeEEEEEecCCCc-eeEEEEecCCCcEEEEecCCC-----eEEEEECCCCc
Q psy17243        173 --DMSLKVWQVVGGKLAQVLVGHTDH-VSCVAVAVTNKSLVVSGSKDS-----NLIVWDMETGG  228 (392)
Q Consensus       173 --dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~  228 (392)
                        -..+.+||+.+.+-...-...... -.+++..  ++.+++.|+.++     .+.+||+.+.+
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence              246899999877533221111111 1122222  566777776544     58889988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.60  E-value=0.12  Score=51.97  Aligned_cols=221  Identities=7%  Similarity=0.079  Sum_probs=121.3

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCC-CceeEEeccc----ccceEEEEEecC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL-GSVVSTFKSH----QSTILAVAVLSD   79 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~----~~~v~~~~~~~~   79 (392)
                      ..++.|+|+++.+.++.+. ...+|.--.|-.... |+-.+ +..|.-|++.. ..+.+.+..|    ...|..-..+++
T Consensus        85 g~~lQiFnl~~k~klks~~-~~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~  161 (1630)
T 1xi4_A           85 GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK  161 (1630)
T ss_pred             CCeEEEeehHHhhhhcccc-cCCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCC
Confidence            3567777777766666655 344566667765543 33332 45799999864 2344444434    456777777888


Q ss_pred             CCEEEEEe-------CCCeEEEEEcCCcee--eeecccceeEEEE--eCC-CCEEEEecC---CCcEEEEeCCCC-CCCC
Q psy17243         80 SRRVVTSD-------KAGVIAVWVADNAQL--LYSALGPSKCLTV--THN-MKYIVSGDG---DNSLRIWPTSPQ-THKD  143 (392)
Q Consensus        80 ~~~l~~~~-------~d~~i~iwd~~~~~~--~~~~~~~~~~~~~--~~~-~~~l~~~~~---d~~i~~~d~~~~-~~~~  143 (392)
                      .+.++..+       -.|.+.+|..+.+..  +..+...-..+..  .+. ...++.+..   .+.+++.++... ....
T Consensus       162 ~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~  241 (1630)
T 1xi4_A          162 QKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ  241 (1630)
T ss_pred             CCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC
Confidence            88766443       347788887775532  1111110001111  011 112222211   368888888543 1111


Q ss_pred             cc-----eeee---ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecC
Q psy17243        144 DE-----RFTV---SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK  215 (392)
Q Consensus       144 ~~-----~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  215 (392)
                      ..     ....   ....-..++..++.-..++.-+.-|.|++||+.++.++..-+-...+|...+...+.+.+ ++...
T Consensus       242 ~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~-~~vnr  320 (1630)
T 1xi4_A          242 PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGI-IGVNR  320 (1630)
T ss_pred             CCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCce-EEEcC
Confidence            11     1111   123334567778877788889999999999999998876554444455444444233333 33345


Q ss_pred             CCeEEEEECCCCce
Q psy17243        216 DSNLIVWDMETGGE  229 (392)
Q Consensus       216 dg~i~iwd~~~~~~  229 (392)
                      .|.|.--.++....
T Consensus       321 ~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          321 KGQVLSVCVEEENI  334 (1630)
T ss_pred             CceEEEEEEccchh
Confidence            66665555554433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.59  E-value=0.25  Score=49.83  Aligned_cols=218  Identities=11%  Similarity=0.114  Sum_probs=122.3

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEE
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV   83 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   83 (392)
                      ...+|.|.|+.++..+..-   .-.--+.-.+|..+.||.=. ..++.|+|+++.+.++.+.- ..+|.-=.|..+. .|
T Consensus        46 ~~~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l  119 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TV  119 (1630)
T ss_pred             CCceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-ee
Confidence            3447778888765543111   11112344577777666654 67899999999988887774 4567777776544 33


Q ss_pred             EEEeCCCeEEEEEcCCce-eeeec-------ccceeEEEEeCCCCEEEEec-------CCCcEEEEeCCCCCCCCcceee
Q psy17243         84 VTSDKAGVIAVWVADNAQ-LLYSA-------LGPSKCLTVTHNMKYIVSGD-------GDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        84 ~~~~~d~~i~iwd~~~~~-~~~~~-------~~~~~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      +..+ +..|+-|++.... +.+.+       ...+-.-..+++.++++..+       -.|.+.+|..+....    ...
T Consensus       120 ~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s----Q~i  194 (1630)
T 1xi4_A          120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----QPI  194 (1630)
T ss_pred             EEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc----hhh
Confidence            3333 4569999997532 21111       12344556677888877543       347888998763222    122


Q ss_pred             eccccceEEEEEE--cCC-CEEEEee---CCCcEEEEEcCCC---eE------EEEEec---CCCceeEEEEecCCCcEE
Q psy17243        149 VSHSEEITCFTVT--WDS-QYLITGS---RDMSLKVWQVVGG---KL------AQVLVG---HTDHVSCVAVAVTNKSLV  210 (392)
Q Consensus       149 ~~~~~~v~~~~~~--~~~-~~l~~~~---~dg~i~i~d~~~~---~~------~~~~~~---~~~~v~~~~~~~~~~~~l  210 (392)
                      .+|...-..+.+.  +.. +.+..+.   ..+.++|.++...   .+      +..+..   -.+-..++..+ +...++
T Consensus       195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs-~k~g~i  273 (1630)
T 1xi4_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-EKHDVV  273 (1630)
T ss_pred             hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEec-cccCEE
Confidence            2333322222221  111 1222211   1368888888543   11      111111   12233456677 445566


Q ss_pred             EEecCCCeEEEEECCCCceeeee
Q psy17243        211 VSGSKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       211 ~~~~~dg~i~iwd~~~~~~~~~~  233 (392)
                      ..-+.-|.|.+||+.++.++..-
T Consensus       274 y~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          274 FLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEecCceEEEEecccchhhhhc
Confidence            66778999999999999876543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.58  E-value=0.39  Score=43.18  Aligned_cols=255  Identities=10%  Similarity=0.057  Sum_probs=145.1

Q ss_pred             CCccCCeEEEEECCCccceeeeccC-------------------------CcCe--eEEEecC---CCCeEEEEe-CCCe
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGH-------------------------LNTV--SCVAISP---NSIFAVSGS-EDNT   49 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h-------------------------~~~v--~~~~~~~---~~~~l~~~~-~dg~   49 (392)
                      +|+..|.|+|+-+.+++.++.+.-.                         .+..  ..+.+..   ||+||+.-. .+..
T Consensus        75 SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan~R  154 (638)
T 3sbq_A           75 SGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKANSR  154 (638)
T ss_dssp             ECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTTTE
T ss_pred             ecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCCcc
Confidence            5889999999999988777665210                         0111  1233322   567777665 4567


Q ss_pred             EEEEeCCCCceeEEecc-cccceEEEEEe--cCCCEEEEEeCC-------CeE---------EE---EEcCCceeeeec-
Q psy17243         50 AKVWGLTLGSVVSTFKS-HQSTILAVAVL--SDSRRVVTSDKA-------GVI---------AV---WVADNAQLLYSA-  106 (392)
Q Consensus        50 v~iwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~d-------~~i---------~i---wd~~~~~~~~~~-  106 (392)
                      |-..+++..++-+.+.. ....+..+.|.  |+..+++.+++.       |..         .+   .|.++.+..... 
T Consensus       155 vAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Qv~  234 (638)
T 3sbq_A          155 VARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQVI  234 (638)
T ss_dssp             EEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEEEE
T ss_pred             eEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEEEE
Confidence            88888888877655542 34568888886  677888887643       221         11   122222221111 


Q ss_pred             -ccceeEEEEeCCCCEEEEecCCC----------------------------------------cEEEEeCCCCCC-CCc
Q psy17243        107 -LGPSKCLTVTHNMKYIVSGDGDN----------------------------------------SLRIWPTSPQTH-KDD  144 (392)
Q Consensus       107 -~~~~~~~~~~~~~~~l~~~~~d~----------------------------------------~i~~~d~~~~~~-~~~  144 (392)
                       .+........+++.+.++.+.+.                                        .+.+.|.+.... ...
T Consensus       235 v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~  314 (638)
T 3sbq_A          235 VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKDSK  314 (638)
T ss_dssp             ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBCCS
T ss_pred             cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccCCc
Confidence             11111233345566655544221                                        233444432110 112


Q ss_pred             ceeeeccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcCCC------eE-------EEEEecCCCceeEEEEecCCCcEE
Q psy17243        145 ERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVGG------KL-------AQVLVGHTDHVSCVAVAVTNKSLV  210 (392)
Q Consensus       145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~------~~-------~~~~~~~~~~v~~~~~~~~~~~~l  210 (392)
                      .............+.++|||+++++++. +.++.++|++..      +.       ..... -.-.....+|. .+++..
T Consensus       315 ~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd-~~G~aY  392 (638)
T 3sbq_A          315 FTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFD-GRGNAY  392 (638)
T ss_dssp             SEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEEC-SSSEEE
T ss_pred             eEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEEC-CCCceE
Confidence            2222233445567889999999887764 789999998742      11       22222 22345567898 566666


Q ss_pred             EEecCCCeEEEEECCCC----------ceeeeecccccceeEE-----EEcCCCeEEEEcCC
Q psy17243        211 VSGSKDSNLIVWDMETG----------GEEHFLAGHLGCVTCV-----KLAGDGTVAMSDLP  257 (392)
Q Consensus       211 ~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~-----~~~~dg~~~~~~~~  257 (392)
                      .+---|..|.-|++...          ..+..+..|-++-...     .-.+||+++++.-+
T Consensus       393 TtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          393 TTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             eeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            77778999999998753          3444555444332222     23579999998753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.47  E-value=0.61  Score=44.10  Aligned_cols=193  Identities=9%  Similarity=0.040  Sum_probs=103.0

Q ss_pred             CCCCeEEEEeCC----CeEEEEeCCCCceeEEe-c------ccccceEEEEEec-CCCEEEEEeCC------CeEEEEEc
Q psy17243         36 PNSIFAVSGSED----NTAKVWGLTLGSVVSTF-K------SHQSTILAVAVLS-DSRRVVTSDKA------GVIAVWVA   97 (392)
Q Consensus        36 ~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~iwd~   97 (392)
                      .++..++.|+.+    ..+.+||..+.+-...- .      .....-.+++..+ +++.++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            455667777653    46888998877543322 1      1111123344443 66677777643      35788898


Q ss_pred             CCceeeee--cccce--eEEEEeCCCCEEEEecCCC--cEEEEeCCCCCCCCccee--eeccccceEEEEEEcC-CCEEE
Q psy17243         98 DNAQLLYS--ALGPS--KCLTVTHNMKYIVSGDGDN--SLRIWPTSPQTHKDDERF--TVSHSEEITCFTVTWD-SQYLI  168 (392)
Q Consensus        98 ~~~~~~~~--~~~~~--~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~  168 (392)
                      .+.+-...  ...+.  .+.+...++..++.|+.++  .+.+||..+.........  ..........+.+..+ +++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            88644322  11111  1233324788888887654  689999876443222110  0011112233445554 56777


Q ss_pred             EeeC--C-----CcEEEEEcCCCeE-----EEEEec--CCCc-eeEEEEecCCCcEEEEecC--------CCeEEEEECC
Q psy17243        169 TGSR--D-----MSLKVWQVVGGKL-----AQVLVG--HTDH-VSCVAVAVTNKSLVVSGSK--------DSNLIVWDME  225 (392)
Q Consensus       169 ~~~~--d-----g~i~i~d~~~~~~-----~~~~~~--~~~~-v~~~~~~~~~~~~l~~~~~--------dg~i~iwd~~  225 (392)
                      .|+.  +     ..+.+||+.+.+.     -..+..  .... -.+++.. .++.+++.|+.        ...+.+||+.
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            7765  2     4689999988761     112211  1111 1122232 33677777774        3459999998


Q ss_pred             CCce
Q psy17243        226 TGGE  229 (392)
Q Consensus       226 ~~~~  229 (392)
                      +.+-
T Consensus       635 t~~W  638 (695)
T 2zwa_A          635 SETL  638 (695)
T ss_dssp             TTEE
T ss_pred             CCeE
Confidence            7654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.38  E-value=0.97  Score=45.38  Aligned_cols=239  Identities=10%  Similarity=0.037  Sum_probs=128.9

Q ss_pred             eEEEEECCCccceeeecc-CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEe-cccccceEEEEEecC-----
Q psy17243          7 LVNVWQMNSHELQSTMEG-HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF-KSHQSTILAVAVLSD-----   79 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~-----   79 (392)
                      .|++.+....+.+..+.. ....|...+.+.  .+++.++ .+.+.++++++++..... ..-...|.|+++.|.     
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~  569 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNG  569 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTT
T ss_pred             EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcc
Confidence            456666555445555543 234576666553  3565554 678888887766432211 123567999998763     


Q ss_pred             -CCEEEEEeC-CCeEEEEEcCCceeeee--ccc--ceeEEEEe--CCCCEEEEecCCCcEEEEeCCCCC--CCCcceeee
Q psy17243         80 -SRRVVTSDK-AGVIAVWVADNAQLLYS--ALG--PSKCLTVT--HNMKYIVSGDGDNSLRIWPTSPQT--HKDDERFTV  149 (392)
Q Consensus        80 -~~~l~~~~~-d~~i~iwd~~~~~~~~~--~~~--~~~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~  149 (392)
                       +.++++|.. |++++|+++.+.+.+..  +..  ...++.+.  ....+|.+|-.||.+..+.+....  .........
T Consensus       570 ~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L  649 (1158)
T 3ei3_A          570 LSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL  649 (1158)
T ss_dssp             CCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC
T ss_pred             cccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc
Confidence             368999996 99999999987665542  211  23333332  234678899999998777654321  111111222


Q ss_pred             ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeE-EEEecCC-CcEEEEecCCCeEEEEECCCC
Q psy17243        150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSC-VAVAVTN-KSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-~~~~~~~-~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      + ..++.-..+...+..-+.+..+....+|.-+ ++.... .-....+.. ..|+... ..-++..+ ++.++|..+.+.
T Consensus       650 G-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~  725 (1158)
T 3ei3_A          650 G-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEI  725 (1158)
T ss_dssp             C-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCS
T ss_pred             C-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEeccc
Confidence            2 3455544454444433333334445555533 332221 111223333 3444221 23344333 456999987654


Q ss_pred             cee--eeecccccceeEEEEcCCCeEEE
Q psy17243        228 GEE--HFLAGHLGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       228 ~~~--~~~~~~~~~v~~~~~~~dg~~~~  253 (392)
                      +..  .+++ -...+..++++|+.+.++
T Consensus       726 ~~~~~~~ip-L~~Tprri~y~~~~~~~~  752 (1158)
T 3ei3_A          726 QKLHIRTVP-LYESPRKICYQEVSQCFG  752 (1158)
T ss_dssp             SSEEEEEEE-CSSEEEEEEEEGGGTEEE
T ss_pred             CCeeEEEEe-CCCCceEEEEcCCCCEEE
Confidence            322  2332 335778888888766543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.31  E-value=0.39  Score=40.04  Aligned_cols=196  Identities=10%  Similarity=0.089  Sum_probs=108.0

Q ss_pred             CCCCeEEEEe--CCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC--------------CeEEEEEcCC
Q psy17243         36 PNSIFAVSGS--EDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA--------------GVIAVWVADN   99 (392)
Q Consensus        36 ~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~iwd~~~   99 (392)
                      +++.+|+...  .++.|...+.+... ...+...  .  +--+++++..|+-+...              ..|+..++..
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            4556665543  34566666654333 3334321  1  23457888888776543              3677778777


Q ss_pred             ceeeeecccceeEEEEeCCCCEEEEec----CCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-CC
Q psy17243        100 AQLLYSALGPSKCLTVTHNMKYIVSGD----GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DM  174 (392)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg  174 (392)
                      .+...-....  +..+++++++|+...    ....|...++...   ....+. .+..    ..++++++.|+-.+. ..
T Consensus        98 ~~~~~l~~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs---~~~~lt-~~~~----~~~~~~g~~iy~t~~g~~  167 (302)
T 3s25_A           98 HGSTVLDPDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE---EKKKIK-NHYL----FTCNTSDRYFYYNNPKNG  167 (302)
T ss_dssp             CCCEEEECSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSC---CCEEEE-SSCC----CCSEEETTEEEEECTTTC
T ss_pred             CcceEeecCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCC---CeEEEe-CCCc----eEeeEECCEEEEEeCCCc
Confidence            6543332222  346778888888775    3345555565422   222222 2211    356778888776654 67


Q ss_pred             cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCC-CeEEEEECCCCceeeeecccccceeEEEEcCCCeEEE
Q psy17243        175 SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKD-SNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAM  253 (392)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~  253 (392)
                      .|...++..+.....+.   +... ..+.|.++.+..+-..+ ..|..-++.... ...+..  ..+  ..|+|++..+.
T Consensus       168 ~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy  238 (302)
T 3s25_A          168 QLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIF  238 (302)
T ss_dssp             CEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEE
T ss_pred             eEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEE
Confidence            88888887665444333   2222 33555555555554333 466666766444 333322  222  34788888888


Q ss_pred             Ec
Q psy17243        254 SD  255 (392)
Q Consensus       254 ~~  255 (392)
                      +.
T Consensus       239 ~~  240 (302)
T 3s25_A          239 YQ  240 (302)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.086  Score=44.59  Aligned_cols=189  Identities=7%  Similarity=0.028  Sum_probs=101.8

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEecccc-cceEEEEE--ecCCCEEEEE--eCCCeEEEEEcCCceeeeecccc--ee
Q psy17243         39 IFAVSGSEDNTAKVWGLTLGSVVSTFKSHQ-STILAVAV--LSDSRRVVTS--DKAGVIAVWVADNAQLLYSALGP--SK  111 (392)
Q Consensus        39 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~--~~  111 (392)
                      .+++.++.||.|.-.|.++|+..-+++... .++....-  .+.+..++.+  +.||.|..++..++........+  +.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            368889999999999999999988887541 22222110  0112244444  58999999999888654433211  10


Q ss_pred             --EEEEe-----------CCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc----cceEEEEEE-----cCCCEEEE
Q psy17243        112 --CLTVT-----------HNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS----EEITCFTVT-----WDSQYLIT  169 (392)
Q Consensus       112 --~~~~~-----------~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----~~v~~~~~~-----~~~~~l~~  169 (392)
                        -+...           ..+..+++|+.+|.+...|+.+++..-.........    ....|....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence              01111           146688999999999999998665432222110000    000111110     12356777


Q ss_pred             eeCCCcEEEEEcCCCeEEEE-----EecCCCc--ee-EEEEecCCCcEEEEecCCCeEEEEECCCCceee
Q psy17243        170 GSRDMSLKVWQVVGGKLAQV-----LVGHTDH--VS-CVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       170 ~~~dg~i~i~d~~~~~~~~~-----~~~~~~~--v~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      +..+..+.+.+ ++++ +..     +......  +. .-..+ .++.+ +.++.||.|.-+|..+|+.+.
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s-~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFS-KDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSC-SSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccc-cCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            77666666666 4443 211     1111000  00 00001 12444 446789999999999888765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.08  E-value=0.53  Score=39.47  Aligned_cols=182  Identities=9%  Similarity=0.058  Sum_probs=90.6

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeE-EecccccceEEEEEecCCCEEEEEeC----CC-------eEEEEEcCCceeeeecc
Q psy17243         40 FAVSGSEDNTAKVWGLTLGSVVS-TFKSHQSTILAVAVLSDSRRVVTSDK----AG-------VIAVWVADNAQLLYSAL  107 (392)
Q Consensus        40 ~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----d~-------~i~iwd~~~~~~~~~~~  107 (392)
                      +++.|+.  .+..||..+.+-.. .+..............++..++.|+.    ++       .+..||..+.+-.....
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            4445543  48899998876543 11111122223333456777777773    12       27788887765433211


Q ss_pred             --cce-eEEEEeCCCCEEEEecCC-------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-----
Q psy17243        108 --GPS-KCLTVTHNMKYIVSGDGD-------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-----  172 (392)
Q Consensus       108 --~~~-~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----  172 (392)
                        .+. .......++..++.|+.+       ..+.+||+.+............ ... .+++. .++++++.|+.     
T Consensus        96 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~-~~~~~-~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A           96 LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK-VYG-HNVIS-HNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC-EES-CEEEE-ETTEEEEECCEESSSC
T ss_pred             CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc-ccc-cEEEE-ECCEEEEEcCCCCCCC
Confidence              111 111122256667777653       3577888865432221111100 011 11222 36667677764     


Q ss_pred             -CCcEEEEEcCCCeEEEEEecCCC-ceeEEEEecCCCcEEEEecCC-----CeEEEEECCCCc
Q psy17243        173 -DMSLKVWQVVGGKLAQVLVGHTD-HVSCVAVAVTNKSLVVSGSKD-----SNLIVWDMETGG  228 (392)
Q Consensus       173 -dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~  228 (392)
                       -..+.+||+.+.+-...-..... .-.+++..  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence             24589999988764332111111 11222332  46676766643     357789988765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.07  E-value=0.49  Score=38.99  Aligned_cols=229  Identities=12%  Similarity=0.083  Sum_probs=102.8

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEE
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVV   84 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   84 (392)
                      ||.|..|-....-.+..-......|..++...+.. ++. . ||.|..|-....-.+..-..-...|..++.-.+  ..+
T Consensus        41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~  115 (282)
T 3qhy_B           41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASY  115 (282)
T ss_dssp             TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEE
T ss_pred             CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEE
Confidence            67777776543211111111223566666544432 222 3 788888865432211111111235666665433  333


Q ss_pred             EEeCCCeEEEEEcCCceeee---ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEE
Q psy17243         85 TSDKAGVIAVWVADNAQLLY---SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVT  161 (392)
Q Consensus        85 ~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~  161 (392)
                      .-. +|.|+.|-......+.   .....+..++...+  ..++-. ||.|..|-........   ........|..++..
T Consensus       116 al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G  188 (282)
T 3qhy_B          116 ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTT---VPAEAQSGVDDVAGG  188 (282)
T ss_dssp             EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTS---CCGGGGSSEEEEEEC
T ss_pred             EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCC---CceecCCCeEEEEec
Confidence            334 7888888654322111   11223333333222  222223 6777777554322221   111123455655543


Q ss_pred             cCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccccee
Q psy17243        162 WDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT  241 (392)
Q Consensus       162 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  241 (392)
                      .+  +.++- .+|.|+.|-......+..-......|..++.. . ...++. . ||.|+.|-.....++..    ...|.
T Consensus       189 ~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G-~-~h~~al-~-~g~v~~wG~n~~gq~~v----~~~v~  257 (282)
T 3qhy_B          189 IF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASG-E-WYSLAL-K-NGKVIAWGSSRTAPSSV----QSGVS  257 (282)
T ss_dssp             SS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEC-S-SCEEEE-E-TTEEEEESTTCCCCGGG----SSCEE
T ss_pred             CC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcC-C-CEEEEE-E-CCEEEEecCCCCccccC----CCCcE
Confidence            22  22223 47788887654321111101112345556544 2 223332 2 88888886554333222    23566


Q ss_pred             EEEEcCCCeEEEEcC
Q psy17243        242 CVKLAGDGTVAMSDL  256 (392)
Q Consensus       242 ~~~~~~dg~~~~~~~  256 (392)
                      +++-...-.+.+...
T Consensus       258 ~iaaG~~h~~al~~~  272 (282)
T 3qhy_B          258 SIEAGPNAAYALKGG  272 (282)
T ss_dssp             EEEECSSCEEEEEC-
T ss_pred             EEEECcCeEEEEecC
Confidence            777766666666543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.79  E-value=0.48  Score=40.49  Aligned_cols=91  Identities=12%  Similarity=0.043  Sum_probs=45.8

Q ss_pred             CCCeEEEEeC-CCeEEEEeCCC--Cce--eEEecccccceEEEEEecCCCEEEEEeC-C---------CeEEEEEcCCce
Q psy17243         37 NSIFAVSGSE-DNTAKVWGLTL--GSV--VSTFKSHQSTILAVAVLSDSRRVVTSDK-A---------GVIAVWVADNAQ  101 (392)
Q Consensus        37 ~~~~l~~~~~-dg~v~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---------~~i~iwd~~~~~  101 (392)
                      ++++++.|+. ...+.+||+.+  .+-  +..+......-.+++.. +++.++.|+. +         ..+.+||+.+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            5666666654 35688899864  322  11222011111222222 5666666665 1         468899998875


Q ss_pred             eeee--cc-cc-eeEEEEeCCCCEEEEecCC
Q psy17243        102 LLYS--AL-GP-SKCLTVTHNMKYIVSGDGD  128 (392)
Q Consensus       102 ~~~~--~~-~~-~~~~~~~~~~~~l~~~~~d  128 (392)
                      -...  .. .+ ....+...+++.++.|+.+
T Consensus        98 W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           98 WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             EEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             EEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            4322  11 11 1122223567777777754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.77  E-value=0.81  Score=39.13  Aligned_cols=207  Identities=11%  Similarity=0.014  Sum_probs=104.8

Q ss_pred             CCeEEEEECCCcc-ceeee---ccCCcCeeEEEecCC---CCeEEEEeC----C----CeEEEEeCCCC--c-----ee-
Q psy17243          5 DCLVNVWQMNSHE-LQSTM---EGHLNTVSCVAISPN---SIFAVSGSE----D----NTAKVWGLTLG--S-----VV-   61 (392)
Q Consensus         5 dg~i~vwd~~~~~-~~~~~---~~h~~~v~~~~~~~~---~~~l~~~~~----d----g~v~iwd~~~~--~-----~~-   61 (392)
                      +|.|++++ .+++ .+..+   .........|+++|+   +..|+.+..    +    +.|..|+....  .     .+ 
T Consensus        48 ~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~  126 (354)
T 3a9g_A           48 PGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLI  126 (354)
T ss_dssp             TTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEE
T ss_pred             CCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEE
Confidence            46777776 3443 22211   112356889999997   444544432    3    56777776544  1     11 


Q ss_pred             EEecc-cccceEEEEEecCCCEEEEEeC-------------CCeEEEEEcCCc----------eeeeecccceeEEEEeC
Q psy17243         62 STFKS-HQSTILAVAVLSDSRRVVTSDK-------------AGVIAVWVADNA----------QLLYSALGPSKCLTVTH  117 (392)
Q Consensus        62 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~----------~~~~~~~~~~~~~~~~~  117 (392)
                      ..+.. .......++|.|+|.+.++.+.             .|.|.-++.+..          +....-......++++|
T Consensus       127 ~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~  206 (354)
T 3a9g_A          127 DGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHR  206 (354)
T ss_dssp             EEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECT
T ss_pred             EcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeC
Confidence            11221 1112467999999986666432             245665555432          11111112345789999


Q ss_pred             -CCCEEEEecCCC---cEEEEeCCCC--------C-----CCCcceeeeccccceEEEEEE-------cCCCEEEEeeCC
Q psy17243        118 -NMKYIVSGDGDN---SLRIWPTSPQ--------T-----HKDDERFTVSHSEEITCFTVT-------WDSQYLITGSRD  173 (392)
Q Consensus       118 -~~~~l~~~~~d~---~i~~~d~~~~--------~-----~~~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~~~d  173 (392)
                       ++.++++-...+   .|.+......        .     .................++|.       .+++++++....
T Consensus       207 ~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~  286 (354)
T 3a9g_A          207 ASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRG  286 (354)
T ss_dssp             TTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTT
T ss_pred             CCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCC
Confidence             555444432221   2433321110        0     000111110123456778883       467677666667


Q ss_pred             CcEEEEEcCCC-eEE--EEEe-cCCCceeEEEEecCCCcEEEEe
Q psy17243        174 MSLKVWQVVGG-KLA--QVLV-GHTDHVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       174 g~i~i~d~~~~-~~~--~~~~-~~~~~v~~~~~~~~~~~~l~~~  213 (392)
                      +.|...++... +..  ..+. +....+..+++. +++.++++.
T Consensus       287 ~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~-pDG~lyv~~  329 (354)
T 3a9g_A          287 SMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVID-DDGGILIST  329 (354)
T ss_dssp             TEEEEEEECGGGCEEEEEEECTTTSCCEEEEEEC-TTSCEEEEE
T ss_pred             CEEEEEEECCCCcccceeeeccCCCCCeeEEEEC-CCCcEEEEE
Confidence            78888888753 222  2232 223567888888 455555554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.74  E-value=1  Score=40.02  Aligned_cols=18  Identities=11%  Similarity=0.161  Sum_probs=14.9

Q ss_pred             ceeEEEEcCCCeEEEEcC
Q psy17243        239 CVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       239 ~v~~~~~~~dg~~~~~~~  256 (392)
                      ....++|.|+|.+.++..
T Consensus       229 Np~gla~dp~G~L~~~d~  246 (454)
T 1cru_A          229 NPQGLAFTPNGKLLQSEQ  246 (454)
T ss_dssp             EEEEEEECTTSCEEEEEE
T ss_pred             CcceEEECCCCCEEEEec
Confidence            467899999999888874

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.71  E-value=1.3  Score=41.90  Aligned_cols=182  Identities=9%  Similarity=0.048  Sum_probs=95.1

Q ss_pred             CeEEEEECCCccceeee-c------cCCcCeeEEEecC-CCCeEEEEeCC------CeEEEEeCCCCceeEEecccccc-
Q psy17243          6 CLVNVWQMNSHELQSTM-E------GHLNTVSCVAISP-NSIFAVSGSED------NTAKVWGLTLGSVVSTFKSHQST-   70 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~-~------~h~~~v~~~~~~~-~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~-   70 (392)
                      ..+.+||..+.+-...- .      .....-.+++..+ ++++++.|+.+      ..+.+||..+.+-...-...... 
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~  491 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF  491 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence            45778887765432221 1      0111112333333 67777777654      35788998876433221111111 


Q ss_pred             eEEEEEecCCCEEEEEeCCC--eEEEEEcCCceeeeecc-----cc---eeEEEEeCC-CCEEEEecC--C-----CcEE
Q psy17243         71 ILAVAVLSDSRRVVTSDKAG--VIAVWVADNAQLLYSAL-----GP---SKCLTVTHN-MKYIVSGDG--D-----NSLR  132 (392)
Q Consensus        71 v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~-----~~---~~~~~~~~~-~~~l~~~~~--d-----~~i~  132 (392)
                      -.+++...+++.++.|+.++  .+.+||+.+.+-.....     .+   ..++.+..+ +..++.|+.  +     ..+.
T Consensus       492 ~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~  571 (695)
T 2zwa_A          492 RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAI  571 (695)
T ss_dssp             SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEE
T ss_pred             cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEE
Confidence            12233324778888887654  68999998875433211     11   123444555 667777765  2     4588


Q ss_pred             EEeCCCCCC-----CCcceeeeccccceEEEEEEcCCCEEEEeeC--------CCcEEEEEcCCCeEE
Q psy17243        133 IWPTSPQTH-----KDDERFTVSHSEEITCFTVTWDSQYLITGSR--------DMSLKVWQVVGGKLA  187 (392)
Q Consensus       133 ~~d~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~i~d~~~~~~~  187 (392)
                      +||+.+...     .............-.++....++++++.|+.        ...+.+||+.+.+-.
T Consensus       572 ~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          572 IFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            999876552     0111100001111122333333677777774        346999999887654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.65  E-value=1.6  Score=41.69  Aligned_cols=234  Identities=11%  Similarity=0.078  Sum_probs=126.2

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec----ccccceEEEEEecCCCE
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK----SHQSTILAVAVLSDSRR   82 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~   82 (392)
                      -+..||..+.+...........|.++.. .++ .|..++.+ -+..+|..+++......    .....|.++....++..
T Consensus        83 Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l  159 (758)
T 3ott_A           83 GILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQI  159 (758)
T ss_dssp             EEEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCE
T ss_pred             CeEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCE
Confidence            3677887665433211112335777654 345 45666655 58889987665432211    12346888888777765


Q ss_pred             EEEEeCCCeEEEEEcCCceeeee-cc-------cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccc
Q psy17243         83 VVTSDKAGVIAVWVADNAQLLYS-AL-------GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        83 l~~~~~d~~i~iwd~~~~~~~~~-~~-------~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  154 (392)
                      .+ ++.. -+..++..+++.... ..       ..+.++....++..|.+|+. +.+..+|..+....   .........
T Consensus       160 Wi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~---~~~~l~~~~  233 (758)
T 3ott_A          160 YV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK---QTEAFHNNS  233 (758)
T ss_dssp             EE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE---EEEEEEEEE
T ss_pred             EE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE---eccCCCCCe
Confidence            54 5544 477888877654321 11       13667777777776666764 45788887533211   111112345


Q ss_pred             eEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec-------CCCceeEEEEecCCCcEEEEecCCCeEEEEECCCC
Q psy17243        155 ITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG-------HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       155 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      |.++....++.+ ..|+.+ -+.+++..+.+.......       ....|.++... .++.+ ..|+..| +.++.....
T Consensus       234 i~~i~~d~~g~l-WigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D-~~g~l-WiGT~~G-l~~~~~~~~  308 (758)
T 3ott_A          234 IKSLALDGNGDL-LAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFAD-QEHNI-WLGTDYG-ISLSRYNSA  308 (758)
T ss_dssp             EEEEEECTTCCE-EEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEEC-TTCCE-EEEESSS-EEEECCCC-
T ss_pred             EEEEEEcCCCCE-EEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEc-CCCCE-EEEeCCc-ccccccCCc
Confidence            777777766654 445544 588898876543322110       12357888766 44444 4455556 554433211


Q ss_pred             ceeeeec-----ccccceeEEEEcCCCeEEEE
Q psy17243        228 GEEHFLA-----GHLGCVTCVKLAGDGTVAMS  254 (392)
Q Consensus       228 ~~~~~~~-----~~~~~v~~~~~~~dg~~~~~  254 (392)
                      -......     .....|.++.-..+|.+-+.
T Consensus       309 ~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG  340 (758)
T 3ott_A          309 LQFIPISQITGTGDGNQFYSLFRDSKGFYWFG  340 (758)
T ss_dssp             CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE
T ss_pred             eeEEecccCCCCCCCceEEEEEEcCCCCEEEe
Confidence            1111110     11235778877777765554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.54  E-value=1.2  Score=39.55  Aligned_cols=101  Identities=16%  Similarity=0.111  Sum_probs=60.6

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCcee--EEecc------cccceEEEEEecC---CCEEEEEeC------
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV--STFKS------HQSTILAVAVLSD---SRRVVTSDK------   88 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~~~------   88 (392)
                      -..-+.|+|.|+|+++++-...+.|.+++..+++..  ..+..      .......|+|+|+   +..|.+...      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345679999999987666544357888886655432  22221      2456789999995   555554432      


Q ss_pred             -------CCeEEEEEcCCc-------eeeee-cc----cceeEEEEeCCCCEEEEec
Q psy17243         89 -------AGVIAVWVADNA-------QLLYS-AL----GPSKCLTVTHNMKYIVSGD  126 (392)
Q Consensus        89 -------d~~i~iwd~~~~-------~~~~~-~~----~~~~~~~~~~~~~~l~~~~  126 (392)
                             ...|.-++....       +.+.. +.    .....+.|.|++.+.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   235655655321       12221 11    2346899999998766644

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.49  E-value=0.91  Score=37.78  Aligned_cols=160  Identities=10%  Similarity=-0.018  Sum_probs=91.2

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEe----CCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS----EDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ...|+..++...+.. .+...    .+..|++++++|+-..    ....|..-+++.. ....+..+..    ..+++++
T Consensus        87 ~~~Iy~i~~dg~~~~-~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g  156 (302)
T 3s25_A           87 RNSLCRIKRNGHGST-VLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSD  156 (302)
T ss_dssp             SEEEEEEETTSCCCE-EEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEET
T ss_pred             CCeEEEEeCCCCcce-EeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEEC
Confidence            456777777765433 33221    1336778888888665    2345555566533 3344443332    4567788


Q ss_pred             CEEEEEeC-CCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCC--CcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         81 RRVVTSDK-AGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGD--NSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        81 ~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      +.|+-.+. ...|...++..+.......+... ..+.|++.+|+-....  ..|..-++.....   ..+.   ...+  
T Consensus       157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~---~~Lt---~~~~--  227 (302)
T 3s25_A          157 RYFYYNNPKNGQLYRYDTASQSEALFYDCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP---VVLT---EANI--  227 (302)
T ss_dssp             TEEEEECTTTCCEEEEETTTTEEEEEECSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC---EECS---CSCE--
T ss_pred             CEEEEEeCCCceEEEEECCCCCEEEEeCCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe---EEEe---CCCc--
Confidence            88876665 57888888877654433333332 3466888888776544  3566666653221   1111   1223  


Q ss_pred             EEEEcCCCEEEEeeC--CCcEEEEEcCC
Q psy17243        158 FTVTWDSQYLITGSR--DMSLKVWQVVG  183 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~--dg~i~i~d~~~  183 (392)
                      ..|+|++++|+-+..  .+.|..-++..
T Consensus       228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          228 EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            237888888876532  35666666643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.02  E-value=0.96  Score=35.41  Aligned_cols=133  Identities=5%  Similarity=-0.159  Sum_probs=76.2

Q ss_pred             CCeEEEEeCCCeEEEEeCCCCc------eeEEecc-cccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee--eeccc
Q psy17243         38 SIFAVSGSEDNTAKVWGLTLGS------VVSTFKS-HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL--YSALG  108 (392)
Q Consensus        38 ~~~l~~~~~dg~v~iwd~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~  108 (392)
                      ..+|+....| +++.=....+.      ...++.. .=..+..++|+|++.+.++  .+|.++-.+..+.+..  .....
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            3456666666 55554444333      1122221 1236779999999986666  7777776665442111  11111


Q ss_pred             c--------eeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc----ceeeeccccceEEEEEEcCCCEEEEeeCCCcE
Q psy17243        109 P--------SKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD----ERFTVSHSEEITCFTVTWDSQYLITGSRDMSL  176 (392)
Q Consensus       109 ~--------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  176 (392)
                      .        -.++.+.+++.+.++  .||.|+-++..+.....-    ..+-...=..+..+.+.|+|.+.++.  |+.+
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            2        267899999988888  569888776532211110    01111122567999999999766666  7775


Q ss_pred             E
Q psy17243        177 K  177 (392)
Q Consensus       177 ~  177 (392)
                      +
T Consensus       157 y  157 (236)
T 1tl2_A          157 Y  157 (236)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.11  E-value=2.4  Score=35.99  Aligned_cols=145  Identities=10%  Similarity=0.056  Sum_probs=75.3

Q ss_pred             ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcc---eeeeccccceEEEEEEcC---CCEEEEe---eCCCcEEEE
Q psy17243        109 PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE---RFTVSHSEEITCFTVTWD---SQYLITG---SRDMSLKVW  179 (392)
Q Consensus       109 ~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~~v~~~~~~~~---~~~l~~~---~~dg~i~i~  179 (392)
                      ....+++.|++.++++--..|.|++++...+......   ............|+++|+   +.+|++.   ..++.|.-|
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            4456667777765555444677766654322111000   011123566788999985   4455543   234566667


Q ss_pred             EcCCC----------eEE-EEEec-CCCceeEEEEecCCCcEEEEecC-------------CCeEEEEECCCCce-----
Q psy17243        180 QVVGG----------KLA-QVLVG-HTDHVSCVAVAVTNKSLVVSGSK-------------DSNLIVWDMETGGE-----  229 (392)
Q Consensus       180 d~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~-----  229 (392)
                      .+..+          +.+ ..+.. .......|+|. +++.+.++.+.             .|.|.-.+.. ++.     
T Consensus       113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~nP  190 (347)
T 3das_A          113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGNP  190 (347)
T ss_dssp             EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTCS
T ss_pred             EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCCC
Confidence            66541          111 12221 12234568999 56666666432             3445444543 220     


Q ss_pred             ---eeee-cccccceeEEEEcCCCeEEEEcC
Q psy17243        230 ---EHFL-AGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       230 ---~~~~-~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                         ...+ .+|. ....++|+|+|.+.+...
T Consensus       191 f~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~  220 (347)
T 3das_A          191 FPGSPVYSYGHR-NVQGLAWDDKQRLFASEF  220 (347)
T ss_dssp             STTCCEEEBCCS-BCCEEEECTTCCEEEEEC
T ss_pred             CCCCeEEeeCCC-CcceEEECCCCCEEEEec
Confidence               0111 1332 356899999999888875

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.49  E-value=4.5  Score=34.42  Aligned_cols=59  Identities=15%  Similarity=0.207  Sum_probs=38.0

Q ss_pred             cceEEEEEEc-------CCCEEEEeeCCCcEEEEEcCCCeEEEE--E-ecCCCceeEEEEecCCCcEEEE
Q psy17243        153 EEITCFTVTW-------DSQYLITGSRDMSLKVWQVVGGKLAQV--L-VGHTDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       153 ~~v~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~~l~~  212 (392)
                      .....+.|..       +++++++....+.|...++..++....  + ......+..+++. +++.++++
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~-pdG~lyv~  339 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG-PDGYLYVL  339 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC-TTSCEEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC-CCCcEEEE
Confidence            4567788863       466777766778888888876654432  2 1223478888888 45555554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.48  E-value=1.3  Score=40.04  Aligned_cols=93  Identities=9%  Similarity=-0.015  Sum_probs=61.8

Q ss_pred             eEEEEECCC----ccceeeeccCCcCeeEEEecCCCCeEEEEe-CCCeEEEEeCCCC------ce-------eEEecccc
Q psy17243          7 LVNVWQMNS----HELQSTMEGHLNTVSCVAISPNSIFAVSGS-EDNTAKVWGLTLG------SV-------VSTFKSHQ   68 (392)
Q Consensus         7 ~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~------~~-------~~~~~~~~   68 (392)
                      .|.|.|...    +.....+-.-......+..+|||++++.++ .+.++.++|++.-      +.       ..+.+ -.
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G  377 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG  377 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence            366777654    222222222334556789999999887665 5788999998742      11       22333 23


Q ss_pred             cceEEEEEecCCCEEEEEeCCCeEEEEEcCCc
Q psy17243         69 STILAVAVLSDSRRVVTSDKAGVIAVWVADNA  100 (392)
Q Consensus        69 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  100 (392)
                      ......+|.++|+...+..-|..|..|++...
T Consensus       378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             SCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             CcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            44678899999966667778999999999754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=90.20  E-value=9.5  Score=33.85  Aligned_cols=228  Identities=10%  Similarity=0.016  Sum_probs=115.4

Q ss_pred             cCeeEEEecCCCC-eEEEEeCCCeEEEEeCCCC---ceeEEec---------ccccceEEEEEecC----CCEEEEEeC-
Q psy17243         27 NTVSCVAISPNSI-FAVSGSEDNTAKVWGLTLG---SVVSTFK---------SHQSTILAVAVLSD----SRRVVTSDK-   88 (392)
Q Consensus        27 ~~v~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~---~~~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~-   88 (392)
                      ..-+.|+|.|++. .|+++...|.|++++.+..   ..+..+.         ........|+|+|+    +...++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3457999999986 4556668899999975422   1222221         11456789999996    333333221 


Q ss_pred             -C----------CeEEEEEcCC----------ceeeeecc-----cceeEEEEeCCCCEEEEecCC--------------
Q psy17243         89 -A----------GVIAVWVADN----------AQLLYSAL-----GPSKCLTVTHNMKYIVSGDGD--------------  128 (392)
Q Consensus        89 -d----------~~i~iwd~~~----------~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d--------------  128 (392)
                       +          ..|.-|.+..          .+.+....     .....+.|.||+.+.++.+..              
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~  173 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS  173 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence             1          1344455532          12222221     133579999999876665432              


Q ss_pred             ---CcEEEEeCCCCC------C-----------CCcceeeeccccceEEEEEEcC-----CC-EEEEeeCCC----cEEE
Q psy17243        129 ---NSLRIWPTSPQT------H-----------KDDERFTVSHSEEITCFTVTWD-----SQ-YLITGSRDM----SLKV  178 (392)
Q Consensus       129 ---~~i~~~d~~~~~------~-----------~~~~~~~~~~~~~v~~~~~~~~-----~~-~l~~~~~dg----~i~i  178 (392)
                         |.|.-.+.....      .           .....+..+|.. ...++|.|.     ++ +++.+...|    .-.|
T Consensus       174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei  252 (463)
T 2wg3_C          174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSARI  252 (463)
T ss_dssp             SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred             CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence               335445554310      0           011122223333 456889986     33 455443212    1233


Q ss_pred             EEcCCC------eEEEEEecCC-CceeEEEEecC------CCcEEEEecCCCeEEEEECCCCce---eeee-c-------
Q psy17243        179 WQVVGG------KLAQVLVGHT-DHVSCVAVAVT------NKSLVVSGSKDSNLIVWDMETGGE---EHFL-A-------  234 (392)
Q Consensus       179 ~d~~~~------~~~~~~~~~~-~~v~~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~---~~~~-~-------  234 (392)
                      ..+..+      .++..+..|. ..+..+.|-..      .+.+|+. ...+.|....++....   ...+ .       
T Consensus       253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~-~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~  331 (463)
T 2wg3_C          253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFG-DRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR  331 (463)
T ss_dssp             EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEE-ETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred             eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEe-cCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence            333322      2344444221 45677777411      1334544 4447766666654321   1122 1       


Q ss_pred             -ccccceeEEEEcCCCeEEEEcC
Q psy17243        235 -GHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       235 -~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                       .....+..+...|||.+.+.+.
T Consensus       332 ~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          332 GYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             SCCCSEEEEEEECTTCCEEEEEE
T ss_pred             ccccCcceEEEECCCCCEEEEec
Confidence             1235789999999999888864

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=89.54  E-value=7.6  Score=31.76  Aligned_cols=212  Identities=13%  Similarity=0.076  Sum_probs=108.3

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee---
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL---  103 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---  103 (392)
                      ..|..++...... ++. . ||.|..|-....-.+..-......|..++.-.+. .++. . ||.|+.|-....-.+   
T Consensus        24 ~~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P   97 (282)
T 3qhy_B           24 SGVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP   97 (282)
T ss_dssp             SSCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred             CCCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence            4677777654432 333 4 8999999765432221111123456666664332 2333 4 899999965543221   


Q ss_pred             eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC
Q psy17243        104 YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                      ......+..++...+  ..++-. +|.|+.|-.....+..   ........|..++...  .+.+.-. ||.|+.|-...
T Consensus        98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg---~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~  168 (282)
T 3qhy_B           98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT---VPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNY  168 (282)
T ss_dssp             GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS---CCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCT
T ss_pred             cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC---CCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCC
Confidence            122234555554433  333334 8999999765322221   1112334566665543  2333334 78888887654


Q ss_pred             CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeee-ec-------ccccceeEEEEcCCCeEEEEc
Q psy17243        184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF-LA-------GHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~-------~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      ...+..-......|..++..  ....++.  .||.|+.|-......+.. .+       -..+.-..+++. ||++..|+
T Consensus       169 ~gqlg~p~~~~~~v~~i~~G--~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~-~g~v~~wG  243 (282)
T 3qhy_B          169 FGQTTVPAEAQSGVDDVAGG--IFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK-NGKVIAWG  243 (282)
T ss_dssp             TSTTSCCGGGGSSEEEEEEC--SSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE-TTEEEEES
T ss_pred             CCCCCCceecCCCeEEEEec--CCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE-CCEEEEec
Confidence            22111111113456666654  3333443  599999997654221110 00       011122345667 99999998


Q ss_pred             CCC
Q psy17243        256 LPP  258 (392)
Q Consensus       256 ~~~  258 (392)
                      ...
T Consensus       244 ~n~  246 (282)
T 3qhy_B          244 SSR  246 (282)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            644

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=89.30  E-value=9.9  Score=32.75  Aligned_cols=211  Identities=11%  Similarity=-0.009  Sum_probs=98.1

Q ss_pred             CeEEEEeCCCeEEEEeCCC-CceeEEe--cccccceEEEEEec-CCCEEEEEeCCC----eEEEEEcCCcee---eee--
Q psy17243         39 IFAVSGSEDNTAKVWGLTL-GSVVSTF--KSHQSTILAVAVLS-DSRRVVTSDKAG----VIAVWVADNAQL---LYS--  105 (392)
Q Consensus        39 ~~l~~~~~dg~v~iwd~~~-~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~----~i~iwd~~~~~~---~~~--  105 (392)
                      ..|+.+...| +.+++... ++.-..+  ......|.+|++.| +...|.++...|    .|...+ +.++.   +..  
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~  100 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP  100 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence            3577777777 55555432 2222221  12345699999998 233455554444    343332 22221   111  


Q ss_pred             -cc-----------cceeEEEEeC-C-CCEEEEecCCCcEEEEeCCCCCCCCcceee---------------eccccceE
Q psy17243        106 -AL-----------GPSKCLTVTH-N-MKYIVSGDGDNSLRIWPTSPQTHKDDERFT---------------VSHSEEIT  156 (392)
Q Consensus       106 -~~-----------~~~~~~~~~~-~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---------------~~~~~~v~  156 (392)
                       +.           ..+.++++.| + ...++++...+.|...+-............               ......+.
T Consensus       101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~  180 (394)
T 3b7f_A          101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH  180 (394)
T ss_dssp             CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred             cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence             11           1345677776 2 556666666666655432211111110000               01123578


Q ss_pred             EEEEEcC-CCEEEEeeCCCcEEEEEcCCCeEEEEEec-----C--------CCceeEEEEecCCCcEEEEecCCCeEEEE
Q psy17243        157 CFTVTWD-SQYLITGSRDMSLKVWQVVGGKLAQVLVG-----H--------TDHVSCVAVAVTNKSLVVSGSKDSNLIVW  222 (392)
Q Consensus       157 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~--------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  222 (392)
                      +|.+.|. ...|+.+..++.|...+ ..++.-..+..     +        ...+.++++.|.+...|+.+...+ |...
T Consensus       181 ~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s  258 (394)
T 3b7f_A          181 SILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM  258 (394)
T ss_dssp             EEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred             EEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence            8888873 44555555455444432 22222222210     0        124788999866556666665444 4444


Q ss_pred             ECCCCceeeeecc--cc---cceeEEEEcC--CCeEEEE
Q psy17243        223 DMETGGEEHFLAG--HL---GCVTCVKLAG--DGTVAMS  254 (392)
Q Consensus       223 d~~~~~~~~~~~~--~~---~~v~~~~~~~--dg~~~~~  254 (392)
                      +- .++.-..+..  ..   ..+..+.++|  .+.+.+.
T Consensus       259 ~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~  296 (394)
T 3b7f_A          259 DR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF  296 (394)
T ss_dssp             ET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred             CC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence            32 2332222221  11   2345677765  3444443

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=89.26  E-value=8.9  Score=32.17  Aligned_cols=157  Identities=9%  Similarity=0.014  Sum_probs=93.4

Q ss_pred             CcCeeEEEecC---CCCeEEEEeCCCeEEEEeCCCCc-------eeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         26 LNTVSCVAISP---NSIFAVSGSEDNTAKVWGLTLGS-------VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        26 ~~~v~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      ...|.++..-+   +..+++..+.+|.++--.+....       ....++. ...+..+........|+..+..|.+..+
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf  172 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF  172 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence            34565554433   46789999999999998765422       2223332 4456666666666789999999999888


Q ss_pred             EcC--Cceee---------eecc--cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCC-----Ccceeee-ccccceE
Q psy17243         96 VAD--NAQLL---------YSAL--GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHK-----DDERFTV-SHSEEIT  156 (392)
Q Consensus        96 d~~--~~~~~---------~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~-~~~~~v~  156 (392)
                      ...  .-...         ..+.  ..+..+...+++..++..+..|.++.-.+......     ....... .....+.
T Consensus       173 ~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv  252 (327)
T 3uc1_A          173 SATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV  252 (327)
T ss_dssp             ECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred             ECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence            877  32211         1111  23444444456678999999999988776432211     1111111 1133455


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCC
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                      .+....+...++..+.+|.+..++...
T Consensus       253 ~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          253 GALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             EEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             EEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            544444455677777788877777643

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=88.33  E-value=9.2  Score=31.17  Aligned_cols=195  Identities=11%  Similarity=0.043  Sum_probs=108.8

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEe---CCCCceeEEecccccceEEEEEec--CCCEEEEEeCCCeEEEEEcCCce
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWG---LTLGSVVSTFKSHQSTILAVAVLS--DSRRVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd---~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~  101 (392)
                      +.+..+.-.....+|+.-+.+|.++--.   +..+.....+. ....|..+.. +  +..+++..+.+|.++...+....
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~  101 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE  101 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence            4555555555555666666788766543   33222111133 3556666644 4  46789999999999999876542


Q ss_pred             ------eeeecc--cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCC-----CcceeeeccccceEEEEEEcCCCEEE
Q psy17243        102 ------LLYSAL--GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHK-----DDERFTVSHSEEITCFTVTWDSQYLI  168 (392)
Q Consensus       102 ------~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (392)
                            ....+.  ..+..+........++..+..|.+..+....-...     ............|..+...+++..++
T Consensus       102 ~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll  181 (276)
T 3no0_A          102 YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLL  181 (276)
T ss_dssp             TCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEE
T ss_pred             hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEE
Confidence                  111111  12333334445567888889999888865421111     11111123345666666666677888


Q ss_pred             EeeCCCcEEEEEcCCC-------eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEE--EECC
Q psy17243        169 TGSRDMSLKVWQVVGG-------KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV--WDME  225 (392)
Q Consensus       169 ~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i--wd~~  225 (392)
                      ..+..|.++...+..-       +-+..+ ...+.+..+... .++..++..+.+|.+..  ++..
T Consensus       182 ~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~-~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          182 VITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI-KEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             EEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE-SSEEEEEEEETTSCEEEEEEEGG
T ss_pred             EEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe-CCCCEEEEEcCCCeEEEeeeCHH
Confidence            8899999998887432       122222 223444444333 33344455556676666  6654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=85.96  E-value=16  Score=31.43  Aligned_cols=214  Identities=8%  Similarity=-0.034  Sum_probs=99.4

Q ss_pred             CeeEEEecC-C-CCeEEEEeCCCeEEEEeCCCCceeEEecc-------------------cccceEEEEEecC-CCEEEE
Q psy17243         28 TVSCVAISP-N-SIFAVSGSEDNTAKVWGLTLGSVVSTFKS-------------------HQSTILAVAVLSD-SRRVVT   85 (392)
Q Consensus        28 ~v~~~~~~~-~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~~~~-~~~l~~   85 (392)
                      .|.++++.| + ...|..+...+.|...+ +.++.-..+..                   ....+.+|.+.|. ...|+.
T Consensus       116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v  194 (394)
T 3b7f_A          116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI  194 (394)
T ss_dssp             EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred             ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence            477899987 2 45566665566555443 23333222211                   1235788999874 345555


Q ss_pred             EeCCCeEEEEEcCCceeeeec----------------ccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCCCcceee
Q psy17243         86 SDKAGVIAVWVADNAQLLYSA----------------LGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHKDDERFT  148 (392)
Q Consensus        86 ~~~d~~i~iwd~~~~~~~~~~----------------~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  148 (392)
                      +..++.|...+- .++.....                ...+.++.++|. ...++++...+ |...+-... ........
T Consensus       195 g~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~-tW~~~~~~  271 (394)
T 3b7f_A          195 GMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREG-VWKRIGDA  271 (394)
T ss_dssp             EEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTT-EEECGGGG
T ss_pred             EECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCC-cceECCCC
Confidence            554444443321 12211111                023677888885 45677766544 444432211 11111100


Q ss_pred             ecc--ccceEEEEEEcC-CCEEEEeeC-----------CCcEEEEEcCCC-eEEEEEe-cCCC-------ceeEEEEecC
Q psy17243        149 VSH--SEEITCFTVTWD-SQYLITGSR-----------DMSLKVWQVVGG-KLAQVLV-GHTD-------HVSCVAVAVT  205 (392)
Q Consensus       149 ~~~--~~~v~~~~~~~~-~~~l~~~~~-----------dg~i~i~d~~~~-~~~~~~~-~~~~-------~v~~~~~~~~  205 (392)
                      ...  ...+.++.+.|. ...|+++..           ++...+|...++ +.-..+. +-..       ....++++|.
T Consensus       272 l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~  351 (394)
T 3b7f_A          272 MPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAH  351 (394)
T ss_dssp             SCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCS
T ss_pred             CCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCC
Confidence            011  023566777763 344555432           233456655442 2222221 1111       1135778765


Q ss_pred             CCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEc
Q psy17243        206 NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLA  246 (392)
Q Consensus       206 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  246 (392)
                      +...|+.++.++.|..-+ +.++.-..+..+...+.++.|.
T Consensus       352 ~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          352 APVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             SSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeEEEEe
Confidence            555556666566554432 2343333333333456666553

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=85.08  E-value=17  Score=31.12  Aligned_cols=157  Identities=5%  Similarity=-0.024  Sum_probs=89.2

Q ss_pred             CeEEEEECCCc--cceeeecc------CCcCeeEEEec---CC----CCeEEEE-eCCCeEEEEeCCCCceeEEeccccc
Q psy17243          6 CLVNVWQMNSH--ELQSTMEG------HLNTVSCVAIS---PN----SIFAVSG-SEDNTAKVWGLTLGSVVSTFKSHQS   69 (392)
Q Consensus         6 g~i~vwd~~~~--~~~~~~~~------h~~~v~~~~~~---~~----~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~   69 (392)
                      -.|.+||+.+.  ++++.+.-      ....+..+.+.   |+    +.++..+ +..+-|.|+|+.+++.-+.+.  ..
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~--~~  200 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH--PT  200 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC--GG
T ss_pred             ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc--CC
Confidence            36889999999  88877643      23457788877   22    3344433 346789999999998876663  21


Q ss_pred             ceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCC----CCEEEEecCCC-cEEEEe---CCCCCC
Q psy17243         70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHN----MKYIVSGDGDN-SLRIWP---TSPQTH  141 (392)
Q Consensus        70 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~d~-~i~~~d---~~~~~~  141 (392)
                            |.|+....++.  +|.-.           .....+..++++|+    ++.|+.....+ .+.-..   ++....
T Consensus       201 ------~~pd~~~~~~i--~G~~~-----------~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~  261 (381)
T 3q6k_A          201 ------FKAERPTKFDY--GGKEY-----------EFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGG  261 (381)
T ss_dssp             ------GSCCSCEEEEE--TTEEE-----------EECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTC
T ss_pred             ------CccccCcceEE--CCEEe-----------EeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcch
Confidence                  23331111111  12111           13356778888887    67777666554 333222   111111


Q ss_pred             CCcceeeecc--ccceEEEEEE-cCCCEEEEeeCCCcEEEEEcCC
Q psy17243        142 KDDERFTVSH--SEEITCFTVT-WDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       142 ~~~~~~~~~~--~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                      ....+.....  ...-..+++. .+|.++++--....|..|+..+
T Consensus       262 ~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          262 KLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             CCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             hhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            2222222111  1333455665 5677777777788999999875

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=84.70  E-value=16  Score=30.37  Aligned_cols=189  Identities=9%  Similarity=0.023  Sum_probs=109.9

Q ss_pred             cCCCCeEEEEeCCCeEEEEeCCCCcee-------E--EecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCc-----
Q psy17243         35 SPNSIFAVSGSEDNTAKVWGLTLGSVV-------S--TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA-----  100 (392)
Q Consensus        35 ~~~~~~l~~~~~dg~v~iwd~~~~~~~-------~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----  100 (392)
                      -++..++++.+.+|.|+--.+...+..       .  .++ ....+..+........++..+..|.++-.....-     
T Consensus         5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r   83 (312)
T 1suu_A            5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR   83 (312)
T ss_dssp             ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred             cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence            356678889999999998866533221       1  122 2344556666666778888899998887765321     


Q ss_pred             ----eeee---ecc--cceeEEEEeC---CCCEEEEecCCCcEEEEeCCCCCCC---CcceeeeccccceEEEEEEcCCC
Q psy17243        101 ----QLLY---SAL--GPSKCLTVTH---NMKYIVSGDGDNSLRIWPTSPQTHK---DDERFTVSHSEEITCFTVTWDSQ  165 (392)
Q Consensus       101 ----~~~~---~~~--~~~~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~  165 (392)
                          ..+.   .+.  ..+..+...+   +..+++..+..|.++...+......   ............+..+.......
T Consensus        84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~  163 (312)
T 1suu_A           84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE  163 (312)
T ss_dssp             ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred             cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence                1110   111  1233332222   4667888899999988876532211   11111222355666666655566


Q ss_pred             EEEEeeCCCcEEEEEcCCC---------eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        166 YLITGSRDMSLKVWQVVGG---------KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       166 ~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      .++..+.+|.+..+....-         .....+. ....|..+... .++..+++.+..|..+...+..
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v-~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSV-KENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEEC-TTCSEEEEEETTSEEEEEEGGG
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEE-CCCCeEEEEECCCceEEEEHHH
Confidence            7888889999999987531         1112222 23455555554 3445567778888888888753

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.60  E-value=36  Score=33.51  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=33.6

Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV  191 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  191 (392)
                      ..+.+++..++..++++-+.|+++++|++.+++++....
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            356777788888999999999999999999999887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	392
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-23
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-23
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.1 bits (240), Expect = 3e-23
 Identities = 51/273 (18%), Positives = 104/273 (38%), Gaps = 21/273 (7%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
              D  + VW   + + + T++GH ++V  ++   +     S S D T K+W       +
Sbjct: 35  ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 94

Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK---CLTVTHN 118
            T   H   + +V+++ +   +V++ +   I +W       + +  G  +    +    +
Sbjct: 95  RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 154

Query: 119 MKYIVSGDGDNSLRIWPTSPQT-----------------HKDDERFTVSHSEEITCFTVT 161
              I S   D ++R+W  + +                    +    ++S +         
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214

Query: 162 WDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
               +L++GSRD ++K+W V  G     LVGH + V  V    +    ++S + D  L V
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH-SGGKFILSCADDKTLRV 273

Query: 222 WDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
           WD +       L  H   VT +         ++
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 306

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.6 bits (236), Expect = 8e-23
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 23/221 (10%)

Query: 3   GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS 62
             D  + +W++ +     T  GH   V  V  + +     S S D T +VW +      +
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179

Query: 63  TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYI 122
             + H+  +  ++   +S     S+  G                              ++
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKS-------------------GKPGPFL 220

Query: 123 VSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV 182
           +SG  D ++++W  S           V H   +         +++++ + D +L+VW   
Sbjct: 221 LSGSRDKTIKMWDVSTGMCL---MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

Query: 183 GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
             +  + L  H   V+ +    T    VV+GS D  + VW+
Sbjct: 278 NKRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.4 bits (233), Expect = 2e-22
 Identities = 58/256 (22%), Positives = 97/256 (37%), Gaps = 25/256 (9%)

Query: 21  TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
            + GH + V+ V   P     VS SED T KVW    G    T K H  ++  ++     
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 81  RRVVTSDKAGVIAVWVADNAQL---LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTS 137
           + + +      I +W     +    ++        +++  N  +IVS   D ++++W   
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE-- 129

Query: 138 PQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHV 197
            QT    + FT  H E +       D   + + S D +++VW V   +    L  H   V
Sbjct: 130 VQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 198 SCVAVAVTNKSLVV-------------------SGSKDSNLIVWDMETGGEEHFLAGHLG 238
            C++ A  +    +                   SGS+D  + +WD+ TG     L GH  
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 239 CVTCVKLAGDGTVAMS 254
            V  V     G   +S
Sbjct: 249 WVRGVLFHSGGKFILS 264

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.9 bits (185), Expect = 5e-16
 Identities = 22/94 (23%), Positives = 40/94 (42%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
           G  D  + +W +++     T+ GH N V  V       F +S ++D T +VW       +
Sbjct: 223 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 282

Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW 95
            T  +H+  + ++     +  VVT      + VW
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.3 bits (212), Expect = 2e-19
 Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 41/220 (18%)

Query: 4   MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST 63
            D    +W + + +  +T  GH   V  ++++P++   VSG+ D +AK+W +  G    T
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221

Query: 64  FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIV 123
           F  H+S I A+    +                                            
Sbjct: 222 FTGHESDINAICFFPNGN---------------------------------------AFA 242

Query: 124 SGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG 183
           +G  D + R++                    IT  + +   + L+ G  D +  VW  + 
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIIC-GITSVSFSKSGRLLLAGYDDFNCNVWDALK 301

Query: 184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
              A VL GH + VSC+ V   +   V +GS DS L +W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVT-DDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.2 bits (196), Expect = 3e-17
 Identities = 42/280 (15%), Positives = 84/280 (30%), Gaps = 46/280 (16%)

Query: 21  TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
           T+ GHL  +  +    +S   VS S+D    +W     + V       S ++  A     
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 81  RRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT 140
             V       + +++     +            T   +    +  +   +     T    
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 141 HKDDERFTVS---HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHV 197
             +  + T +   H+ ++   ++  D++  ++G+ D S K+W V  G   Q   GH   +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229

Query: 198 SCVAVAVTNKSLVVSG---------------------------------SKDSNLIV--- 221
           + +       +                                      SK   L++   
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 222 -------WDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
                  WD         LAGH   V+C+ +  DG    +
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.7 bits (187), Expect = 4e-16
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 5/138 (3%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKV--WGLTLGS 59
           G  D    +W +     + T  GH + ++ +   PN     +GS+D T ++         
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261

Query: 60  VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK---CLTVT 116
           +  +  +    I +V+     R ++         VW A  A       G      CL VT
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321

Query: 117 HNMKYIVSGDGDNSLRIW 134
            +   + +G  D+ L+IW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 8e-17
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 15/232 (6%)

Query: 1   MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
            G  D  + VW + + +    + GH+  V CV      +  VSG+ D   KVW     + 
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV--VSGAYDFMVKVWDPETETC 169

Query: 61  VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLT-VTHNM 119
           + T + H + + ++    D   VV+      I VW  +    +++  G     + +    
Sbjct: 170 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 227

Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVW 179
             +VSG+ D++++IW           +    H        + ++  ++IT S D ++K+W
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ--SAVTCLQFNKNFVITSSDDGTVKLW 285

Query: 180 QVVGGKLAQVLV-----GHTDHVSCVAVAVTNKSLVV---SGSKDSNLIVWD 223
            +  G+  + LV     G    V  +  + T     V   +G++++ L+V D
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 1e-16
 Identities = 62/297 (20%), Positives = 106/297 (35%), Gaps = 51/297 (17%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPN------------------------ 37
           G  D  + VW   + +   T+ GH   V    +  N                        
Sbjct: 33  GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHT 92

Query: 38  --------------SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV 83
                             VSGS D T +VW +  G  +     H + +    V  D RRV
Sbjct: 93  LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRV 150

Query: 84  VTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHK 142
           V+     ++ VW  +    L++  G +  +     +  ++VSG  D S+R+W       +
Sbjct: 151 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW-----DVE 205

Query: 143 DDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAV 202
                      +     +      L++G+ D ++K+W +  G+  Q L G   H S V  
Sbjct: 206 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 265

Query: 203 AVTNKSLVVSGSKDSNLIVWDMETGGEEHFL-----AGHLGCVTCVKLAGDGTVAMS 254
              NK+ V++ S D  + +WD++TG     L      G  G V  ++ +    V   
Sbjct: 266 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 5e-16
 Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 10/238 (4%)

Query: 11  WQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQST 70
           W+    +    ++GH + V    +       VSGS+DNT KVW    G  + T   H   
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 71  ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNS 130
           + +  +  D+  +  S    +          +       S    +  + K +VSG  D +
Sbjct: 60  VWSSQM-RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

Query: 131 LRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL 190
           LR+W       +  +   V          V +D + +++G+ D  +KVW          L
Sbjct: 119 LRVWD-----IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173

Query: 191 VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGD 248
            GHT+ V  +     +   VVSGS D+++ VWD+ETG   H L GH    + ++L  +
Sbjct: 174 QGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.3 bits (191), Expect = 1e-16
 Identities = 55/285 (19%), Positives = 106/285 (37%), Gaps = 38/285 (13%)

Query: 3   GMDCLVNVWQMNSHELQSTMEG------------------HLNTVSCVAISPNSIFAVSG 44
           G +    V++++   L + +                        +  V  SP+  F  +G
Sbjct: 80  GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139

Query: 45  SEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIA---VWVADNAQ 101
           +ED   ++W +    +V   + H+  I ++       ++V+      +    +     + 
Sbjct: 140 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 199

Query: 102 LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTS----PQTHKDDERFTVSHSEEITC 157
            L    G +       + KYI +G  D ++R+W +      +    +      H + +  
Sbjct: 200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 259

Query: 158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQ------------VLVGHTDHVSCVAVAVT 205
              T D Q +++GS D S+K+W +                     +GH D V  VA    
Sbjct: 260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-Q 318

Query: 206 NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT 250
           N   ++SGSKD  ++ WD ++G     L GH   V  V +A   +
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS 363

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.6 bits (184), Expect = 1e-15
 Identities = 41/237 (17%), Positives = 79/237 (33%), Gaps = 42/237 (17%)

Query: 1   MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGL----- 55
            G  D  V +W + + +   T+       +      +  +  +GS D   +VW       
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239

Query: 56  --TLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCL 113
              L S   +   H+ ++ +V    D + VV+      + +W   NA     +  P+   
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD 173
                +                               H + +     T + +Y+++GS+D
Sbjct: 300 CEVTYIG------------------------------HKDFVLSVATTQNDEYILSGSKD 329

Query: 174 MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT-----NKSLVVSGSKDSNLIVWDME 225
             +  W    G    +L GH + V  VAVA         ++  +GS D    +W  +
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.4 bits (155), Expect = 6e-12
 Identities = 46/241 (19%), Positives = 87/241 (36%), Gaps = 28/241 (11%)

Query: 17  ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF------------ 64
           EL  +++ H + V CV  S +  +  +G  + T +V+ ++ GS+V+              
Sbjct: 54  ELHKSLD-HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111

Query: 65  ------KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHN 118
                  S    I +V    D + + T  +  +I +W  +N +++    G  + +     
Sbjct: 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 171

Query: 119 MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV 178
                     +  R                       T      D +Y+  GS D +++V
Sbjct: 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231

Query: 179 WQVVGGKLAQVL-------VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH 231
           W    G L + L        GH D V  V      +  VVSGS D ++ +W+++    + 
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKS 290

Query: 232 F 232
            
Sbjct: 291 D 291

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 122 IVSGDGDNSLRIWPTSPQTHKDDE-RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQ 180
            +    ++   ++  +     D E   ++ H+  + C   + D +YL TG  + + +V++
Sbjct: 31  ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYR 89

Query: 181 VVGGKLAQVLVGHTDHV 197
           V  G L   L   +   
Sbjct: 90  VSDGSLVARLSDDSAAN 106

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 9e-14
 Identities = 58/229 (25%), Positives = 88/229 (38%), Gaps = 10/229 (4%)

Query: 16  HELQ--STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILA 73
           H LQ           V C+      I  VSG  DNT K+W             H  ++L 
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQKI--VSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 74  VAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRI 133
           +    +   +  S  + V    V     L          L +  N   +V+   D S+ +
Sbjct: 61  LQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119

Query: 134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH 193
           W  +  T     R  V H        V +D +Y+++ S D ++KVW     +  + L GH
Sbjct: 120 WDMASPTDITLRRVLVGHR--AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 177

Query: 194 TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTC 242
              ++C+        LVVSGS D+ + +WD+E G     L GH   V C
Sbjct: 178 KRGIACLQ---YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC 223

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 9e-12
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 61/273 (22%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS---------------- 45
           G  D  + +W  N+ E +  + GH  +V C+      I   S                  
Sbjct: 31  GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNT 90

Query: 46  ----------------------EDNTAKVW---GLTLGSVVSTFKSHQSTILAVAVLSDS 80
                                 +D +  VW     T  ++      H++ +  V      
Sbjct: 91  LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY 150

Query: 81  RRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQ 139
               + D+   I VW     + + +  G  + +       + +VSG  DN++R+W     
Sbjct: 151 IVSASGDR--TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 208

Query: 140 THKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG---------KLAQVL 190
                    V    E     + +D++ +++G+ D  +KVW +V              + L
Sbjct: 209 ACL-----RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 263

Query: 191 VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
           V H+  V  +     ++  +VS S D  +++WD
Sbjct: 264 VEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.5 bits (142), Expect = 2e-10
 Identities = 35/256 (13%), Positives = 67/256 (26%), Gaps = 27/256 (10%)

Query: 25  HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAVAVLSDSRR 82
            +  +SC A + +         ++   ++  +      V   K H   +  V    DS R
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 83  VVTSDKAGVIAVWVADNAQLLY-----SALGPSKCLTVTHNMKYIVSGDGDNSLRIW-PT 136
           +VT        VW                   ++C+    N K    G G   + I    
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 137 SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA--------- 187
                   +         +       +S  L  GS D   +++     ++          
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 188 ---------QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG 238
                             V  V  +      V   S DS + + D +       LA    
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETL 244

Query: 239 CVTCVKLAGDGTVAMS 254
            +  V    + ++  +
Sbjct: 245 PLLAVTFITESSLVAA 260

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 37/281 (13%), Positives = 80/281 (28%), Gaps = 28/281 (9%)

Query: 2   GGMDCLVNVWQMNSHELQ--STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVW--GLTL 57
              +  V++++ + ++      ++ H   V+ V  +P+S   V+   D  A VW      
Sbjct: 25  CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 84

Query: 58  GSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK------ 111
                           V    + ++      + VI++   +     +      K      
Sbjct: 85  WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 144

Query: 112 -CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT---------------VSHSEEI 155
             L    N   + +G  D   RI+    +  ++    T                S    +
Sbjct: 145 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 204

Query: 156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK 215
                + +   +   S D ++ +           L   T  +  V    T  SLV +G  
Sbjct: 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI-TESSLVAAGH- 262

Query: 216 DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL 256
           D   +++  ++   +    G L         G         
Sbjct: 263 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 303

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 33/255 (12%), Positives = 75/255 (29%), Gaps = 31/255 (12%)

Query: 1   MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
              +       + +    +   +   +TV  +   PNS+   +GS D   +++   +  V
Sbjct: 116 SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV 175

Query: 61  VS------------------TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA-- 100
                                  S    +  V   ++  RV        + +  AD    
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235

Query: 101 -QLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFT 159
              L S   P   +T       + +G  D    ++       K      +   ++ +   
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 294

Query: 160 VTWDSQYLITGSRDMSLKVWQVVGGK-LAQVLVGHTDHVSCVAV---AVTNKSLVVSGSK 215
           +T   ++     +++  K          A +   H + VS ++V        S   +   
Sbjct: 295 LTARERF-----QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM 349

Query: 216 DSNLIVWDMETGGEE 230
           D  + +WD+ +    
Sbjct: 350 DGGMSIWDVRSLESA 364

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.2 bits (141), Expect = 2e-10
 Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 2/110 (1%)

Query: 117 HNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSL 176
            + +++++   D  +  +                  +         DSQ   T   D ++
Sbjct: 216 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATI 275

Query: 177 KVWQVVGGKLAQVLVGHTDHVSCVAVAV--TNKSLVVSGSKDSNLIVWDM 224
           +VW V   K  Q        +    V V  T    ++S S D  L  +++
Sbjct: 276 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 28/259 (10%), Positives = 65/259 (25%), Gaps = 19/259 (7%)

Query: 7   LVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
            ++        +        + V+ V  SP   S +  SG E     VWG T     ++ 
Sbjct: 44  CLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV 103

Query: 65  --------KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADN------AQLLYSALGPS 110
                   +     I  ++   + RR+    +                  ++   +   +
Sbjct: 104 EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN 163

Query: 111 KCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITG 170
            C          ++   D S+  +   P      +R        +     + DS   +  
Sbjct: 164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT 223

Query: 171 SRDMSLKVW---QVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
                       +                    A++  +     +   D+ + VWD+ T 
Sbjct: 224 VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS 283

Query: 228 GEEHFLAGHLGCVTCVKLA 246
                       +   ++ 
Sbjct: 284 KCVQKWTLDKQQLGNQQVG 302

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 11/105 (10%)

Query: 108 GPSKCLTVTHNMKYIVSGDGDNS-LRIWPTSPQTHKDDERFTVSHSEEITC--FTVTWDS 164
             +  L+       I    G ++ +R             +FT   S  +T   F+    S
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 165 QYLITGSRDMSLKVWQVVGGKLAQVLV--------GHTDHVSCVA 201
           QYL +G     + VW     K +  +              +S ++
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 10/95 (10%), Positives = 28/95 (29%), Gaps = 3/95 (3%)

Query: 4   MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST 63
                +       +     +  +          +S    +   D T +VW +T    V  
Sbjct: 229 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK 288

Query: 64  FKSHQSTILAVAV---LSDSRRVVTSDKAGVIAVW 95
           +   +  +    V    + + R+++    G +  +
Sbjct: 289 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 3/57 (5%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGL 55
            G D  + VW + + +           +    +      +   +S S D T   + L
Sbjct: 269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.8 bits (140), Expect = 3e-10
 Identities = 20/92 (21%), Positives = 37/92 (40%)

Query: 134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH 193
             T     +DD    V+HS  +   T + D   + + S D ++K+W V   K+ + +   
Sbjct: 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 279

Query: 194 TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME 225
           T         +  K  +VS S +  +   + E
Sbjct: 280 TRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (122), Expect = 5e-08
 Identities = 30/264 (11%), Positives = 68/264 (25%), Gaps = 12/264 (4%)

Query: 3   GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--SV 60
                V    + S         H +  +    SP+  +  SG      ++W  T     +
Sbjct: 35  CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94

Query: 61  VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMK 120
            +T       +  ++  S+S+R+    +       V        +     +   +     
Sbjct: 95  KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF 154

Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW---DSQYLITGSRDMSLK 177
                    S     T         +F  +  E            D     +   D ++ 
Sbjct: 155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 214

Query: 178 VWQVVGGKLAQVLVGHTDHV------SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH 231
           ++  V G    V    +                 + + + S S D  + +W++ T   E 
Sbjct: 215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 274

Query: 232 FLAGHLGC-VTCVKLAGDGTVAMS 254
            +          + +       +S
Sbjct: 275 TIPVGTRIEDQQLGIIWTKQALVS 298

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 108 GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYL 167
           G    LT + +   I S   D +++IW  +  T K ++   V    E     + W  Q L
Sbjct: 239 GSVFGLTWSPDGTKIASASADKTIKIW--NVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296

Query: 168 ITGSRDMSLKVW 179
           ++ S +  +   
Sbjct: 297 VSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 4   MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST 63
            + +         +       H  +V  +  SP+     S S D T K+W +    V  T
Sbjct: 216 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 275

Query: 64  FKSHQS-TILAVAVLSDSRRVVTSDKAGVIAVWVAD 98
                      + ++   + +V+    G I     +
Sbjct: 276 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLN-TVSCVAISPNSIFAVSGSEDNTAKVW 53
              D  + +W + + +++ T+          + I       VS S +      
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 14/112 (12%)

Query: 133 IWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG 192
           ++P+ P+T +                  T     +   +   S+    V      ++   
Sbjct: 8   LFPSLPRTAR----------GTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTE 56

Query: 193 HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG--GEEHFLAGHLGCVTC 242
           H+   +    +  +     SG    N+ +WD        +  +    G V  
Sbjct: 57  HSHQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 6/69 (8%), Positives = 16/69 (23%), Gaps = 1/69 (1%)

Query: 27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTS 86
           T   +  +P        +   +     +   +    +  H                 + 
Sbjct: 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 87 DKAGVIAVW 95
          D  G + +W
Sbjct: 77 DVHGNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 5/59 (8%), Positives = 14/59 (23%), Gaps = 2/59 (3%)

Query: 196 HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
               +        +       +++    + +  +      H    T  K +  G    S
Sbjct: 19  TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 46/297 (15%), Positives = 77/297 (25%), Gaps = 51/297 (17%)

Query: 5   DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST- 63
           D L+           +T+  H   V  V IS  +    +G      KVW ++     S  
Sbjct: 31  DALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88

Query: 64  ----FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH-- 117
                 +  + I +  +L D   ++   +A  +++W          A   S         
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148

Query: 118 NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD---- 173
                       S          ++   R    H++  +C  ++ D   L TG  D    
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208

Query: 174 ------------------------------------MSLKVWQVVGGKLAQVLVGHTDHV 197
                                                S      V       L  H   V
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV 268

Query: 198 SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
             +  A   K   VS  KD+ L  W     G   F +     V    ++ D    ++
Sbjct: 269 LSLKFAYCGK-WFVSTGKDNLLNAWRTPY-GASIFQSKESSSVLSCDISVDDKYIVT 323

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS 171
            L   +  K+ VS   DN L  W    +T      F    S  +    ++ D +Y++TGS
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAW----RTPYGASIFQSKESSSVLSCDISVDDKYIVTGS 325

Query: 172 RDMSLKVWQVV 182
            D    V++V+
Sbjct: 326 GDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH 193
                  +K D+     H   +      +  ++ ++  +D  L  W+   G         
Sbjct: 247 NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KE 305

Query: 194 TDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
           +  V    ++V +K  +V+GS D    V++
Sbjct: 306 SSSVLSCDISVDDK-YIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 7e-09
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 11  WQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQST 70
               +   +  +  H + V  +  +    + VS  +DN    W    G+ +   K   S+
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSS 308

Query: 71  ILAVAVLSDSRRVVTSDKAGVIAVW 95
           +L+  +  D + +VT        V+
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVW 53
            G D L+N W+              ++V    IS +  + V+GS D  A V+
Sbjct: 283 TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 7/99 (7%)

Query: 158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS 217
           F VT D Q         +L    +         + H + V  V ++      V +G    
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTIS-NPTRHVYTGG-KG 72

Query: 218 NLIVWDMETGGEEHFLA-----GHLGCVTCVKLAGDGTV 251
            + VWD+   G +  ++          +   KL  DG  
Sbjct: 73  CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.5 bits (134), Expect = 1e-09
 Identities = 36/282 (12%), Positives = 75/282 (26%), Gaps = 46/282 (16%)

Query: 17  ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF-KSHQSTILAVA 75
            +     GH   ++ ++ S +     S   +     W ++ G     F   H + I  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 76  VLSDSRRVVTSDKAGVIAVWVADNA-----QLLYSALGPSKCLTVTHNMKYIVSGDGDNS 130
             S       S    +  V    +       +          L V+ +    V+    + 
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 131 LRIWPTSPQTHKDDERFTV-----------------------------------SHSEEI 155
                            +                                     H  EI
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNK--SLVVSG 213
           T    + +  +L+   +   +  + V            T H + VA    +     + +G
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 214 SKDSNLIVWDMETGGEEHFL---AGHLGCVTCVKLAGDGTVA 252
           S D+++IVW+M    +   +   A  +  V  V    + T+ 
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV 284

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.2 bits (128), Expect = 8e-09
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH-FLAGHLGCVTC 242
           G + QV  GH   ++ ++ +  +   + S   + ++  WD+ TG     F   H   +T 
Sbjct: 2   GSIDQVRYGHNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 243 VK 244
           +K
Sbjct: 61  IK 62

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (114), Expect = 5e-07
 Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 1/117 (0%)

Query: 108 GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYL 167
                +  ++N  ++V+ D    +  +  +             H+ ++ C + + D+  L
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 168 ITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV-AVAVTNKSLVVSGSKDSNLIVWD 223
            TGS D S+ VW +       +++     +S V +V   N++ +VS  +DSN+  W+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 4e-04
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 1   MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCV--AISPNSIFAVSGSEDNTAKVWGLT 56
            G +D  V VW MN       +    + +S V   I  N    VS  +D+  K W + 
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 5e-04
 Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 3/127 (2%)

Query: 57  LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCL--- 113
           LGS+      H   I A++  +D + + ++D  G I  W                 +   
Sbjct: 1   LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD 173
             T +   + +   D+ L++ P         +      S +     V+ D    +     
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 174 MSLKVWQ 180
                  
Sbjct: 121 HIAIYSH 127

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 5e-04
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 1   MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS- 59
                   +V         ++   H   V+CV+ SP+++   +GS DN+  VW +   S 
Sbjct: 199 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 258

Query: 60  -VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW 95
             +    +H  + +   +  +   +V++ +   I  W
Sbjct: 259 HPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 2e-09
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 9/186 (4%)

Query: 19  QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS 78
           ++T+ GH+ +V    +     + ++G++D   +V+       +     H   + A+    
Sbjct: 5   RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 79  DSRRVVTSDKAGVIAVWVADNAQLLYSAL----GPSKCLTVTHNMKYIVSGDGDNSLRIW 134
               V  S    V    +                    +    N+KYIV+G  DN+L +W
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT 194
               +  K+          +      T +      G     +   + V G    V+ G  
Sbjct: 124 ----KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179

Query: 195 DHVSCV 200
           D+   V
Sbjct: 180 DNTLIV 185

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 4e-09
 Identities = 39/315 (12%), Positives = 79/315 (25%), Gaps = 62/315 (19%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFA-------------------- 41
           G  D ++ V+   + +    + GH   V  +  +   I                      
Sbjct: 29  GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH 88

Query: 42  -----------------------VSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS 78
                                  V+GS DNT  VW L   S V          L      
Sbjct: 89  VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 148

Query: 79  DSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTV------THNMKYIVSGDGDNSLR 132
           ++   V   +  + +V        +  +      L V                D   S  
Sbjct: 149 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 208

Query: 133 IWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG 192
                 +        T+   +      +     +            + V       +   
Sbjct: 209 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 268

Query: 193 -----------HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH-FLAGHLGCV 240
                      H  ++S +     + +++VSGS ++   ++++ +G   H  +      +
Sbjct: 269 DANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQI 327

Query: 241 TCVKLAGDGTVAMSD 255
             V   G   VA  +
Sbjct: 328 WSVNFKGKTLVAAVE 342

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 3e-08
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 145 ERFTVS-HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVA 203
           +R T+  H   +    + ++  Y+ITG+ D  ++V+  +  K    L GH   V    + 
Sbjct: 4   QRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA--LK 60

Query: 204 VTNKSLVVSGSKDSNLIVWDMET 226
             +  ++VSGS D  + VWD++ 
Sbjct: 61  YAHGGILVSGSTDRTVRVWDIKK 83

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 3/99 (3%)

Query: 1   MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
           +             +   +     H N  +      +    VSGS +N   ++ L  G +
Sbjct: 257 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 315

Query: 61  V-STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD 98
           V +        I +V        V   +K G   + + D
Sbjct: 316 VHANILKDADQIWSVN-FKGKTLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 37/223 (16%), Positives = 73/223 (32%), Gaps = 7/223 (3%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
           G       V+               +  S   +S +    VSGS DNT  VW +     +
Sbjct: 135 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL 194

Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
                H   I +     + +R +++     I +W  +N +L+Y      +  T    +  
Sbjct: 195 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY----TLQGHTALVGLLR 250

Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
           +      ++            D  R    H   ++  T  + S  ++    +    ++ +
Sbjct: 251 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNL 310

Query: 182 VGGKLAQV-LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
             GKL    ++   D +    V    K+LV +  KD    +  
Sbjct: 311 RSGKLVHANILKDADQIWS--VNFKGKTLVAAVEKDGQSFLEI 351

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.8 bits (130), Expect = 6e-09
 Identities = 30/283 (10%), Positives = 57/283 (20%), Gaps = 36/283 (12%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSI---------FAVSGSEDNTAKV 52
           G     V V+   +    + +E        V   P                 S      V
Sbjct: 74  GERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGV 133

Query: 53  WGLTLGSVVSTFKSHQSTIL-------AVAVLSDSRR-VVTSDKAGVIAVWVADNAQLLY 104
             L   +            +             D     V     G   +   +      
Sbjct: 134 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED 193

Query: 105 SAL--------GPSKCLTVTHNMKYIVSGDGDNSLRIWPT---------SPQTHKDDERF 147
             L           + +  T+  K           +  P          +        + 
Sbjct: 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 253

Query: 148 TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNK 207
              H      + +          +    + V     G+           +  + V+   K
Sbjct: 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEK 312

Query: 208 S-LVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDG 249
             L    + D  L + D E+G E   +         +  A  G
Sbjct: 313 PLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 23/292 (7%), Positives = 59/292 (20%), Gaps = 46/292 (15%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPN----------SIFAVSGSEDNTAK 51
                   V    +  +   ++G    +    ++ +                G   +  +
Sbjct: 24  FAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVE 81

Query: 52  VWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIA---------VWVADNAQL 102
           V+        +  +   +    V        +    K  +           V   +    
Sbjct: 82  VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141

Query: 103 LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHK---DDERFTVSHSEEITCFT 159
                 P                  D SL       +        E F       I    
Sbjct: 142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA 201

Query: 160 VTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV--GHTDHVSCVA---------------- 201
            +  +  L+  +    +    +  G    +      T+                      
Sbjct: 202 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 261

Query: 202 ---VAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT 250
              + V  +      +    ++V D +TG            +  + ++ D  
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEK 312

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.5 bits (129), Expect = 8e-09
 Identities = 15/227 (6%), Positives = 47/227 (20%), Gaps = 33/227 (14%)

Query: 11  WQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQST 70
                           +     A   +S      S  +        + +      S    
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP-- 220

Query: 71  ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNS 130
                       V+           +   +    +       +    +   +  GD    
Sbjct: 221 -----------FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY--- 266

Query: 131 LRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL 190
                      +             +       + Y         L  + V   K+    
Sbjct: 267 -----RMIIPLES-------SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--- 311

Query: 191 VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL 237
               ++++ + ++  ++  V+    D  +  + +E   +E  +    
Sbjct: 312 -EVKNNLTDLRLS-ADRKTVMVRKDDGKIYTFPLEKPEDERTVETDK 356

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 5/62 (8%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
                ++  + + + ++        N ++ + +S +    +   +D     + L      
Sbjct: 294 APEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE 349

Query: 62  ST 63
            T
Sbjct: 350 RT 351

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 8e-09
 Identities = 35/279 (12%), Positives = 74/279 (26%), Gaps = 52/279 (18%)

Query: 17  ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAV 76
           E+  T+ GH   ++ + ++P     +SGS D     W     S  S  + H + I+++  
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDN 54

Query: 77  LSDSRRVVTSDKAGVIAVW----------------------VADNAQLLYSALGPSKCLT 114
                    S    +                          V  N   L      +  + 
Sbjct: 55  SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 115 VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM 174
            +  +    S    +   +     + +                 T        I+ S   
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174

Query: 175 SLKVWQVVGGKLAQVLVGHTDHVSC--------------------VAVAVTNKSLVVSGS 214
           +      V GK+    +   +  +                            + LV +GS
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234

Query: 215 KDSNLIVWDMETGGEE-HFLAGHLGCVTCVKLAGDGTVA 252
            D+N+ ++ ++   +    L  H   V  +      T+ 
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV 273

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 1e-07
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV-GGKLAQVLVG 192
             +                 E        +   + TGS D ++ ++ V    K+ + L  
Sbjct: 197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA 256

Query: 193 HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
           H D V+ +       S +VS   D+ +  W+
Sbjct: 257 HKDGVNNLLW--ETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 4e-07
 Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCV 243
            ++ + + GH   ++ + V     + ++SGS D  ++ W   +  +      H   +  +
Sbjct: 3   DEVLKTISGHNKGITALTV-----NPLISGSYDGRIMEWSSSSMHQ-----DHSNLIVSL 52

Query: 244 KLAGDGTVAM 253
             +     + 
Sbjct: 53  DNSKAQEYSS 62

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (97), Expect = 5e-05
 Identities = 9/86 (10%), Positives = 24/86 (27%), Gaps = 2/86 (2%)

Query: 11  WQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGL-TLGSVVSTFKSHQS 69
                    + +                    +GS D    ++ +     ++    +H+ 
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 70  TILAVAVLSDSRRVVTSDKAGVIAVW 95
            +  +   + S  +V+S     I  W
Sbjct: 260 GVNNLLWETPS-TLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW-DSQYLITG 170
                     + +G  D ++ I+  S +      +   +H + +    + W     L++ 
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIY--SVKRPMKIIKALNAHKDGVNN--LLWETPSTLVSS 275

Query: 171 SRDMSLKVWQVV 182
             D  +K W VV
Sbjct: 276 GADACIKRWNVV 287

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 14/116 (12%)

Query: 151 HSEEITCFTVTWDSQYLITGSRDMSLKVW------------QVVGGKLAQVLVGHTDHVS 198
           H  +I    V+  + + ++ S D  LKVW            +     + +  + H D + 
Sbjct: 13  HDADIFS--VSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 199 CVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
            +        LV + S   +L+ + +    E   +      +    +      A+ 
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 26/236 (11%)

Query: 20  STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS------HQSTILA 73
           +  + H   +  V+   +    VS S D   KVW   L    +          H+S +  
Sbjct: 8   NAGKAHDADIFSVSACNSFT--VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 74  VAVL-------SDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGD 126
           V VL        +   V T+  +G +  +                   +   +  + S  
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRITR--------EDETKKVIFEKLDLLDSDM 117

Query: 127 GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL 186
             +S           +      V+   + T +   +      + S  ++      + G +
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 187 AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTC 242
            +  +  +   +   V ++ + L+ +G  +  + + ++ T    +        +  
Sbjct: 178 -ESPMTPSQFATS--VDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN 230

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 30/304 (9%), Positives = 71/304 (23%), Gaps = 56/304 (18%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAV---------------SGSE 46
                 +  +++   +    +      +    +  +S +A+               +   
Sbjct: 85  TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 144

Query: 47  DNTAKVWGL------------------TLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK 88
             T  +W                     L   V +  +      +V +          + 
Sbjct: 145 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNN 204

Query: 89  AGVIAVWVADNAQLLYSALGPS--------KCLTVTHNMKYIVSGDGDNSLRIW------ 134
             V    ++    L       S        + +  +     +      NS          
Sbjct: 205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264

Query: 135 -------PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA 187
                   + P           +HS  +   +     + L +   D  L+ W V   +  
Sbjct: 265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 324

Query: 188 QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAG 247
             L  H D +      +       S ++     V  ++ G      A     + CV    
Sbjct: 325 TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV--CL 382

Query: 248 DGTV 251
           D ++
Sbjct: 383 DRSI 386

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 187 AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH 231
           A     H   +  V+      S  VS S D  L VWD +    E+
Sbjct: 7   ANAGKAHDADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNEN 48

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 2/90 (2%)

Query: 1   MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
             G D  +  W + + E  +T+  H + +              G       V+ +     
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL--AVDEHGDSLAEPGVFDVKFLKK 363

Query: 61  VSTFKSHQSTILAVAVLSDSRRVVTSDKAG 90
                       ++  +   R +    +AG
Sbjct: 364 GWRSGMGADLNESLCCVCLDRSIRWFREAG 393

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV---GHTDHVSCVAVAVTNK 207
             + I+   +      L+  S D SL V++         L+    +   + C        
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 208 SLVVSGSKDSNLIVWDMET 226
             +  G+    ++  D+  
Sbjct: 70  LQIYVGTVQGEILKVDLIG 88

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 7e-08
 Identities = 24/224 (10%), Positives = 68/224 (30%), Gaps = 14/224 (6%)

Query: 21  TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK---SHQSTILAVAVL 77
             +   + +S + I P+    +  S D +  V+   + +          ++  +L    +
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 78  SDSRRVV---TSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIW 134
            ++   +   T     +    +   +    +    +  +                   I 
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125

Query: 135 PTSPQTHKDDERF-----TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV 189
              P+ + D         + +   +   FT+  +S  LI G  +  ++ +++   +    
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185

Query: 190 ---LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE 230
                G    +  VA+    +      S D  + V   +  G++
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 185 KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL---AGHLGCVT 241
           ++ Q+     D++S + +   +KSL++  S D +L V+  +   +   L     +   + 
Sbjct: 2   QIVQIEQAPKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 242 CVKLAGDG 249
           C     + 
Sbjct: 61  CCNFIDNT 68

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 1   MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
             G D +++ W + + +         N  S V I+ +       + D+T K       ++
Sbjct: 268 TAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTN----AAI 322

Query: 61  VSTFKSHQSTILAV 74
             T + + S+I  +
Sbjct: 323 DQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 1/96 (1%)

Query: 7   LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS 66
               +    H L          V+ +  SP   F  +   D     W L     +  F  
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291

Query: 67  HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL 102
             +    V +      +  +          A +  +
Sbjct: 292 F-NEDSVVKIACSDNILCLATSDDTFKTNAAIDQTI 326

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 8/86 (9%), Positives = 24/86 (27%), Gaps = 8/86 (9%)

Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS 171
            +  +   K++ +   D  +  W          +    +   E +   +      L   +
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCW----NLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311

Query: 172 RDMSLKVWQVVGGKLAQVLVGHTDHV 197
            D + K        + Q +  +   +
Sbjct: 312 SDDTFKTN----AAIDQTIELNASSI 333

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 27/222 (12%), Positives = 56/222 (25%), Gaps = 33/222 (14%)

Query: 24  GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV 83
               T         ++F+V+  +     +   +   + +   +  + +    + +  R +
Sbjct: 18  EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYL 76

Query: 84  VTSDKAGVIAVWVADNAQL--------LYSALGPSKCLTVTHNMKY-IVSGDGDNSLRIW 134
               + G + +      +            A             KY I          I 
Sbjct: 77  FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT 194
                   D E          +   +T+D Q      R  +             +L  H 
Sbjct: 137 --------DGETLEPKK--IQSTRGMTYDEQEYHPEPRVAA-------------ILASHY 173

Query: 195 DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
                V V  T K L+V  +  +NL   ++      H     
Sbjct: 174 RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 215

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 27/267 (10%), Positives = 52/267 (19%), Gaps = 6/267 (2%)

Query: 32  VAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSDSRRV-VTSDKA 89
            A+     + +  +  N   V  +   +V  +     +       +  D+R   V ++  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 90  GVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV 149
           G I     D  +  + A   S    V  +M           +       Q   D      
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV----LVGHTDHVSCVAVAVT 205
              E  +                     +     G L                       
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 206 NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPK 265
                   S    L  W  ++   E  +   +      K        +           K
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241

Query: 266 RPLRRLLKKEVSLDTYTWQRKYGHLTS 292
              +          T     K  +   
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIY 268

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 20/226 (8%), Positives = 43/226 (19%), Gaps = 20/226 (8%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
                 + V+          +         V +   +                +  G   
Sbjct: 118 VVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYT 176

Query: 62  STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
                  +         D                                      + + 
Sbjct: 177 VALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSM-------------LYTIARFKDDKQD 222

Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
             + D            +T K   +     +E       +      I G  +   K    
Sbjct: 223 PATADLLYGYLSVDL--KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLK 280

Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
               +    + HT    CVA        +  G   ++L V++ +T 
Sbjct: 281 QRKLIKAANLDHT--YYCVAFD-KKGDKLYLGGTFNDLAVFNPDTL 323

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 11/103 (10%), Positives = 25/103 (24%), Gaps = 3/103 (2%)

Query: 2   GGMDCLVNVWQMNSHELQ-STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
             +        + + +                  SP     + G   N    + L    +
Sbjct: 226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKL 284

Query: 61  VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL 103
           +        T   VA      ++        +AV+  D  + +
Sbjct: 285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 1/58 (1%)

Query: 8   VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK 65
           +  + +   +L        +T  CVA          G   N   V+       V   K
Sbjct: 274 LAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 19/257 (7%), Positives = 50/257 (19%), Gaps = 32/257 (12%)

Query: 2   GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSI--------FAVSGSEDNTAKVW 53
           G     V V+   +    + +E        V    + I                + A   
Sbjct: 92  GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL 151

Query: 54  GLTLGSVVSTFK-------SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA--------D 98
            +   S     K          +          +    +   A   A  +         +
Sbjct: 152 SVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211

Query: 99  NAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF 158
            +     A  P   +    +           +                   S   ++   
Sbjct: 212 CSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271

Query: 159 T-------VTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLV- 210
                   +          +   +        G+ +  +  +      +  A    S   
Sbjct: 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNY 330

Query: 211 VSGSKDSNLIVWDMETG 227
            + +    L ++D  + 
Sbjct: 331 ANSAGTEVLDIYDAASD 347

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 27/261 (10%), Positives = 57/261 (21%), Gaps = 51/261 (19%)

Query: 50  AKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV---VTSDKAGVIAVWVADNAQLLYSA 106
           +KV G    +  +      S        + SRR    + +  AG    WV+     +   
Sbjct: 3   SKVAGSAAAASAAAASDGSS--CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLG 60

Query: 107 LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY 166
                 L++           G                                 +     
Sbjct: 61  HSLGAFLSLAV-----AGHSGS---------------------------DFALASTSFAR 88

Query: 167 LITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSC-------VAVAVTNKSLVVSGSKDSNL 219
              G R   ++V+  V       +                +    ++  L+      S  
Sbjct: 89  SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148

Query: 220 IVWDMETGGEEH-------FLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLL 272
               +    ++        F        T    +   ++A SDL  +  A      +   
Sbjct: 149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208

Query: 273 KKEVSLDTYTWQRKYGHLTSS 293
            +  S            + + 
Sbjct: 209 AQNCSSQAAQANYPGMLVWAV 229

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.3 bits (98), Expect = 7e-05
 Identities = 16/207 (7%), Positives = 46/207 (22%), Gaps = 12/207 (5%)

Query: 41  AVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILA-------VAVLSDSRRV-VTSDKAGVI 92
           +  G   +  +V+       ++  +   +   +       +   + S  +      +   
Sbjct: 89  SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148

Query: 93  AVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIW---PTSPQTHKDDERFTV 149
           A      A         S              G    SL                 + T 
Sbjct: 149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208

Query: 150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSL 209
           + +         +    +   +  +        G  +   + G+           +    
Sbjct: 209 AQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNF-RSAGFQ 267

Query: 210 VVSGSKDSNLIVWDMETGGEEHFLAGH 236
           +V+  K+++ I+            A  
Sbjct: 268 MVAKLKNTDGIMILTVEHSRSCLAAAE 294

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 165 QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT--NKSLVVSGSKDSNLIVW 222
            Y++  +R   L V       + +V+       + +   V    +    + +K  +L+  
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 223 DMETGGEEHFLAGHLGC 239
           D+ TG     +      
Sbjct: 62  DLVTGETLGRIDLSTPE 78

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 22/237 (9%), Positives = 53/237 (22%), Gaps = 20/237 (8%)

Query: 40  FAVSGSEDNTAKVWGLTLGSVVSTFK--SHQSTILAVAVLSDSRRV-VTSDKAGVIAVWV 96
           + ++ +  +   V      +V           T +   V    R    T +K+  +    
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 97  ADNAQLLYSALGPSKC--------LTVTHNMKYIVSGDGDNSLRIWPTSPQ--------T 140
               + L      +            ++ + K +   +    L +     Q         
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV 200
                R       +IT      D   L    RD+ +   +  G  +    +   +  +  
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE-AGTLVEDKPIQSWEAETYA 181

Query: 201 AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLP 257
              V         S       +      +      +   +  + L            
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 7/84 (8%), Positives = 24/84 (28%), Gaps = 5/84 (5%)

Query: 4   MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST 63
              ++  + +  +     +    ++   V +S +      G        +          
Sbjct: 258 AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316

Query: 64  FKSHQSTILAVAVLSDSRRVVTSD 87
                +  +++A +    R+ T D
Sbjct: 317 VDLPGNASMSLASV----RLFTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 26/254 (10%), Positives = 62/254 (24%), Gaps = 34/254 (13%)

Query: 3   GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS 62
            +              +         ++ +A + +         D    V     G++V 
Sbjct: 111 EVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL--HVMDPEAGTLVE 168

Query: 63  TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYI 122
                       A           + +GV+A                    T   ++   
Sbjct: 169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATP----------------FYTARKDIDPA 212

Query: 123 VSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV 182
                   L            +         ++  F+   +            L+ + + 
Sbjct: 213 DPTAYRTGLLTM----DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLE 268

Query: 183 GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTC 242
                + +         V V+ T+ S V  G    +L  +D ET  +             
Sbjct: 269 KNASIKRV-PLPHSYYSVNVS-TDGSTVWLGGALGDLAAYDAETLEK----------KGQ 316

Query: 243 VKLAGDGTVAMSDL 256
           V L G+ +++++ +
Sbjct: 317 VDLPGNASMSLASV 330

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 20/203 (9%), Positives = 52/203 (25%), Gaps = 21/203 (10%)

Query: 32  VAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGV 91
             +   ++F+V+  +     +       +V    +  + +    + +  R ++   +   
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDAR 84

Query: 92  IAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH 151
           I +                           +         R   +S     +D       
Sbjct: 85  IDMIDLW-----------------AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127

Query: 152 SEE---ITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKS 208
                       T + + +++               ++A ++  H      V V  T K 
Sbjct: 128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV 187

Query: 209 LVVSGSKDSNLIVWDMETGGEEH 231
           L+V+     NL V  +       
Sbjct: 188 LLVNYKDIDNLTVTSIGAAPFLA 210

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 2/80 (2%)

Query: 164 SQYL-ITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVW 222
           S +  I  S   ++ V  V   K+   +     +     ++     + V+ +  +++ + 
Sbjct: 1   STFAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSII 59

Query: 223 DMETGGEEHFLAGHLGCVTC 242
           D  T      +         
Sbjct: 60  DTATNNVIATVPAGSSPQGV 79

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 4   MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLTLGSVVS 62
               V++    ++++ + +       + +A++P+     V+ S  NT  V      ++ +
Sbjct: 222 YFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280

Query: 63  TFK 65
           T  
Sbjct: 281 TMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 15/116 (12%), Positives = 34/116 (29%), Gaps = 1/116 (0%)

Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS 171
            + VT +   +   + D+       +      D     +    I        +       
Sbjct: 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK 221

Query: 172 RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
              ++ +      K+   +    D  + +AV    K + V+ S  + + V D  T 
Sbjct: 222 YFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 2/71 (2%)

Query: 168 ITGSRDMSLKVWQV-VGGKLAQV-LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME 225
           I       + VW +   G L    +V     V  + V+   + L V    +  ++ + + 
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 226 TGGEEHFLAGH 236
                   A  
Sbjct: 68  PDDGALTFAAE 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	392
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.7
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.64
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.62
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.57
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.43
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.39
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.31
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.26
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.23
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.22
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.2
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.16
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.13
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.08
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.08
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.07
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.07
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.97
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.91
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.91
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.89
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.72
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.64
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.42
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.39
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.06
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.05
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.89
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.81
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.8
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.61
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.46
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.43
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.35
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.27
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.27
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.24
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.18
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.93
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.88
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.85
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.67
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.49
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.35
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.08
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.81
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.51
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.37
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	94.68
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.44
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.39
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.27
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.03
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	89.12
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.5
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	82.72
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	81.52

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-41  Score=288.66  Aligned_cols=232  Identities=20%  Similarity=0.288  Sum_probs=198.3

Q ss_pred             eeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce-----eEEecccccceEEEEEecCCCEEEEEeCCCeEE
Q psy17243         19 QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV-----VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIA   93 (392)
Q Consensus        19 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   93 (392)
                      +..+ .|...|.+++|+|++++|++|+ ||.|+|||+.++..     ......|.+.|.+++|+|++++|++++.|+.|+
T Consensus        45 ~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~  122 (337)
T d1gxra_          45 INTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             EEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             EEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccc
Confidence            3444 5999999999999999999997 89999999976543     223456889999999999999999999999999


Q ss_pred             EEEcCCce--eee---ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEE
Q psy17243         94 VWVADNAQ--LLY---SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI  168 (392)
Q Consensus        94 iwd~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (392)
                      +||+....  ...   .+...+.++.++|++.++++++.++.|++|++.+.   ........|...+.+++|++++.+++
T Consensus       123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~---~~~~~~~~~~~~v~~l~~s~~~~~~~  199 (337)
T d1gxra_         123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccc
Confidence            99987543  332   33456788999999999999999999999999743   33445557889999999999999999


Q ss_pred             EeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCC
Q psy17243        169 TGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGD  248 (392)
Q Consensus       169 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~d  248 (392)
                      +++.|+.+++||+++++.+..+. |...|.+++|+ +++.+|++++.|+.+++||+++++.. ....|...|++++|+|+
T Consensus       200 ~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~  276 (337)
T d1gxra_         200 TGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYC  276 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTT
T ss_pred             cccccccccccccccceeecccc-cccceEEEEEc-ccccccceeccccccccccccccccc-cccccccccceEEECCC
Confidence            99999999999999999887775 88999999999 67889999999999999999988765 45678999999999999


Q ss_pred             CeEEEEcCCC
Q psy17243        249 GTVAMSDLPP  258 (392)
Q Consensus       249 g~~~~~~~~~  258 (392)
                      |++++++..+
T Consensus       277 g~~l~s~s~D  286 (337)
T d1gxra_         277 GKWFVSTGKD  286 (337)
T ss_dssp             SSEEEEEETT
T ss_pred             CCEEEEEeCC
Confidence            9999987543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-40  Score=284.85  Aligned_cols=245  Identities=22%  Similarity=0.339  Sum_probs=219.3

Q ss_pred             EEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC
Q psy17243         10 VWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA   89 (392)
Q Consensus        10 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   89 (392)
                      .|.. .......|++|.++|++++|+|++++|++|+.||+|+|||+++++.+.++.+|...|.+++|+|++.+++++..+
T Consensus         2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1           2 EWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             CCCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccCC-CCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccc
Confidence            3533 345567899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCE
Q psy17243         90 GVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY  166 (392)
Q Consensus        90 ~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  166 (392)
                      +.+..|+....+.....   ...+.++.++++++.+++++.|+.+++||+++.   ........|...+.+++|++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  157 (317)
T d1vyhc1          81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDGTL  157 (317)
T ss_dssp             SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccc---eeeeEEccCCCcceeeecccCCCE
Confidence            99999999887765543   457789999999999999999999999999744   334455578899999999999999


Q ss_pred             EEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecC-------------------CCcEEEEecCCCeEEEEECCCC
Q psy17243        167 LITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT-------------------NKSLVVSGSKDSNLIVWDMETG  227 (392)
Q Consensus       167 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~l~~~~~dg~i~iwd~~~~  227 (392)
                      |++++.|+.|++|++.+++....+..|...+.++.++|.                   .+.++++++.|+.|++||++++
T Consensus       158 l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  237 (317)
T d1vyhc1         158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  237 (317)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             EEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC
Confidence            999999999999999999999999999999999999853                   2457899999999999999999


Q ss_pred             ceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        228 GEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       228 ~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      +++..+.+|...|.+++|+|++++++++..+
T Consensus       238 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  268 (317)
T d1vyhc1         238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADD  268 (317)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             cEEEEEeCCCCCEEEEEECCCCCEEEEEECC
Confidence            9999999999999999999999999987644

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-38  Score=270.93  Aligned_cols=230  Identities=16%  Similarity=0.226  Sum_probs=202.1

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCcee--EEecccccceEEEEEecCCC
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV--STFKSHQSTILAVAVLSDSR   81 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~   81 (392)
                      .++.|.+||+.+++..+.+.+|...|++++|+|++++|++|+.||+|+|||+.+++..  ..+..|..+|.+++|+|+++
T Consensus        36 ~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~  115 (311)
T d1nr0a1          36 NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK  115 (311)
T ss_dssp             ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccc
Confidence            4567999999999999999999999999999999999999999999999999887654  55778999999999999999


Q ss_pred             EEEEEeCC--CeEEEEEcCCceeeeec---ccceeEEEEeCCCCE-EEEecCCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         82 RVVTSDKA--GVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKY-IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        82 ~l~~~~~d--~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      +|++++.+  ..+++|++++++....+   ...+.+++|+|++++ +++|+.|+.|++||+++   .........|..+|
T Consensus       116 ~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~---~~~~~~~~~~~~~i  192 (311)
T d1nr0a1         116 RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGEHTKFV  192 (311)
T ss_dssp             EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECCCSSCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc---cccccccccccccc
Confidence            99999864  56999999988776654   457899999999885 78899999999999974   33444555788999


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe-------cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV-------GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      +++.|+|++++|++++.|+.|++||+++++....+.       +|...|++++|+ +++.+|++|+.||.|+|||+++++
T Consensus       193 ~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s-~~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTE
T ss_pred             cccccCccccccccccccccccccccccccccccccccccccccccccccccccC-CCCCEEEEEeCCCeEEEEECCCCc
Confidence            999999999999999999999999999988777653       578899999999 678899999999999999999999


Q ss_pred             eeeeecccc
Q psy17243        229 EEHFLAGHL  237 (392)
Q Consensus       229 ~~~~~~~~~  237 (392)
                      ++..+..|.
T Consensus       272 ~~~~l~~~~  280 (311)
T d1nr0a1         272 VEKTIPVGT  280 (311)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEECCC
Confidence            998887654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=269.39  Aligned_cols=247  Identities=20%  Similarity=0.282  Sum_probs=214.1

Q ss_pred             CccCCeEEEEECCCcccee-----eeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC--ceeEEecccccceEEE
Q psy17243          2 GGMDCLVNVWQMNSHELQS-----TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--SVVSTFKSHQSTILAV   74 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~   74 (392)
                      |+ ||.|+|||+.+.....     ...+|.+.|.+++|+|++++|++|+.||.|++||+...  +....+..|...+..+
T Consensus        69 g~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  147 (337)
T d1gxra_          69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL  147 (337)
T ss_dssp             EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred             EE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccc
Confidence            44 8999999997654332     23469999999999999999999999999999998744  5567778899999999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeecc
Q psy17243         75 AVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH  151 (392)
Q Consensus        75 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  151 (392)
                      .|+|++.++++++.++.+++|++.+++.....   ..++.++++++++..+++++.|+.+++||+++...    .....+
T Consensus       148 ~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~----~~~~~~  223 (337)
T d1gxra_         148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ----LQQHDF  223 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----EEEEEC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee----eccccc
Confidence            99999999999999999999999998876543   45788999999999999999999999999974432    223367


Q ss_pred             ccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee
Q psy17243        152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  231 (392)
                      ...|.+++|+|++++|++++.|+.+++||+++++.. ....|...|++++|+ +++++|++++.||.|++||+.+++.+.
T Consensus       224 ~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s-~~g~~l~s~s~Dg~i~iwd~~~~~~~~  301 (337)
T d1gxra_         224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFA-YCGKWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEEC-CCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            889999999999999999999999999999988765 456799999999999 678899999999999999999999887


Q ss_pred             eecccccceeEEEEcCCCeEEEEcC
Q psy17243        232 FLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .+. |...|.+++|+|++++++++.
T Consensus       302 ~~~-~~~~v~~~~~s~d~~~l~t~s  325 (337)
T d1gxra_         302 QSK-ESSSVLSCDISVDDKYIVTGS  325 (337)
T ss_dssp             EEE-CSSCEEEEEECTTSCEEEEEE
T ss_pred             Ecc-CCCCEEEEEEeCCCCEEEEEe
Confidence            765 788999999999999888754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.9e-38  Score=266.19  Aligned_cols=252  Identities=20%  Similarity=0.399  Sum_probs=229.3

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ||+.||+|+|||+++++.+.++++|...|.+++|+|++.+++++..++.+.+|+....+....+..|...+.++.|+|++
T Consensus        34 s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (317)
T d1vyhc1          34 SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG  113 (317)
T ss_dssp             EEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS
T ss_pred             EEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC  157 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~  157 (392)
                      +.+++++.|+.+++||+++++.+..+   ...+.++++++++++|++++.|+.|++|++...   ........+...+.+
T Consensus       114 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~---~~~~~~~~~~~~i~~  190 (317)
T d1vyhc1         114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK---ECKAELREHRHVVEC  190 (317)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEE
T ss_pred             ceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc---eeeEEEecCCCCceE
Confidence            99999999999999999998876654   446789999999999999999999999999743   333344467788888


Q ss_pred             EEEEcC--------------------CCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCC
Q psy17243        158 FTVTWD--------------------SQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       158 ~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  217 (392)
                      ++++|+                    +.++++++.|+.|++||+++++++..+.+|...|.+++|+ +++.+|++++.||
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg  269 (317)
T d1vyhc1         191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH-SGGKFILSCADDK  269 (317)
T ss_dssp             EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-SSSSCEEEEETTT
T ss_pred             EEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEC-CCCCEEEEEECCC
Confidence            888764                    4578999999999999999999999999999999999999 6788999999999


Q ss_pred             eEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        218 NLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       218 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .|++||+.+++++..+.+|...|++++|+|++++++++.
T Consensus       270 ~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         270 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             eEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            999999999999999999999999999999998877753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-38  Score=270.69  Aligned_cols=234  Identities=16%  Similarity=0.247  Sum_probs=195.0

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-ccccceEEEEEecCCCEEEEEeCCCeEEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSDSRRVVTSDKAGVIAV   94 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   94 (392)
                      |++.+.+.||.++|++++|+|++++|++|+.||+|++||+++++.+..+. .|...|.+++|+|+++ +++++.|+.+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEE
Confidence            56788999999999999999999999999999999999999999988875 6899999999999986 566778999999


Q ss_pred             EEcCCcee------eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEE
Q psy17243         95 WVADNAQL------LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI  168 (392)
Q Consensus        95 wd~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (392)
                      |+......      .......+.++++++++..+++++ ++.+.+|+...     .  ........+.+++|+|++++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~l~  152 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK-----L--TEVPISYNSSCVALSNDKQFVA  152 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE-----E--EEEECSSCEEEEEECTTSCEEE
T ss_pred             eccCCccccccccccccccccccccccccccccccccc-ccccccccccc-----c--cccccccccccccccccccccc
Confidence            99865432      223445678899999998777665 56899998541     1  1223456678999999999999


Q ss_pred             EeeCCCcEEEEEcCCCeEEE-EEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee---eecccccceeEEE
Q psy17243        169 TGSRDMSLKVWQVVGGKLAQ-VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH---FLAGHLGCVTCVK  244 (392)
Q Consensus       169 ~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~  244 (392)
                      +++.|+.|++||+++++... ....|...|++++|+ +++.+|++++.|+.|++||+.++....   .+.+|...|++++
T Consensus       153 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~  231 (299)
T d1nr0a2         153 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS-NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS  231 (299)
T ss_dssp             EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999998887554 345689999999999 678899999999999999998876553   5567889999999


Q ss_pred             EcCCCeEEEEcCCCC
Q psy17243        245 LAGDGTVAMSDLPPS  259 (392)
Q Consensus       245 ~~~dg~~~~~~~~~~  259 (392)
                      |+|++++++++..++
T Consensus       232 ~s~~~~~l~sgs~dg  246 (299)
T d1nr0a2         232 WSPDNVRLATGSLDN  246 (299)
T ss_dssp             ECTTSSEEEEEETTS
T ss_pred             ccccccceEEEcCCC
Confidence            999999999876543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-38  Score=279.48  Aligned_cols=251  Identities=24%  Similarity=0.362  Sum_probs=201.9

Q ss_pred             ccCCeEEEEECCCccce----eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-------------
Q psy17243          3 GMDCLVNVWQMNSHELQ----STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-------------   65 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-------------   65 (392)
                      ..++...+|+....+..    ....+|++.|+|++|+|+|++|++|+ |+.|+|||+.+++.+..+.             
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~  113 (388)
T d1erja_          35 QTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN  113 (388)
T ss_dssp             ECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------
T ss_pred             CCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccc
Confidence            45778889997644322    12235999999999999999999987 8999999999998877664             


Q ss_pred             -----ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeec---ccceeEEEEeCCCCEEEEecCCCcEEEEeCC
Q psy17243         66 -----SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTS  137 (392)
Q Consensus        66 -----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~  137 (392)
                           .|...|.+++|+|++++|++++.||.|++||...++.+...   ...+.++.+++++..+++++.++.+++||..
T Consensus       114 ~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             -----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecc
Confidence                 35567999999999999999999999999999999877654   4578899999999999999999999999997


Q ss_pred             CCCCCCcceeeeccccceEEEEEEc-CCCEEEEeeCCCcEEEEEcCCCeEEEEE-------ecCCCceeEEEEecCCCcE
Q psy17243        138 PQTHKDDERFTVSHSEEITCFTVTW-DSQYLITGSRDMSLKVWQVVGGKLAQVL-------VGHTDHVSCVAVAVTNKSL  209 (392)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~  209 (392)
                      ..   ...... .+.....++.+.+ ++++|++++.|+.|++||.++++....+       .+|...|++++|+ +++.+
T Consensus       194 ~~---~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~  268 (388)
T d1erja_         194 TG---QCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQS  268 (388)
T ss_dssp             TT---EEEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSE
T ss_pred             cc---cccccc-ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC-CCCCE
Confidence            33   222223 3344445555554 7899999999999999999998776654       3578899999999 67889


Q ss_pred             EEEecCCCeEEEEECCCCce------------eeeecccccceeEEEEcCCCeEEEEcCCCC
Q psy17243        210 VVSGSKDSNLIVWDMETGGE------------EHFLAGHLGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       210 l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      |++++.||.|++||+.+++.            ......|...|.+++|+|+|++++++..++
T Consensus       269 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg  330 (388)
T d1erja_         269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR  330 (388)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred             EEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC
Confidence            99999999999999986543            334556888999999999999999986543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-37  Score=267.62  Aligned_cols=237  Identities=19%  Similarity=0.288  Sum_probs=205.9

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      .+..++|++|.++|++++|+|++++|++|+.||+|+|||+.+++.+..+..|..+|.+++|+|+++++++++.|+.+.+|
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCceee----eec--------------------------------------------ccceeEEEEeCCCCEEEEecC
Q psy17243         96 VADNAQLL----YSA--------------------------------------------LGPSKCLTVTHNMKYIVSGDG  127 (392)
Q Consensus        96 d~~~~~~~----~~~--------------------------------------------~~~~~~~~~~~~~~~l~~~~~  127 (392)
                      +.......    ...                                            ...+....+.+...++++++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec
Confidence            87643210    000                                            012345567778889999999


Q ss_pred             CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe--cCCCceeEEEEecC
Q psy17243        128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV--GHTDHVSCVAVAVT  205 (392)
Q Consensus       128 d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~  205 (392)
                      |+.|++||+++.   ........|...|++++|+|++++|++++.|+.|++||++..+....+.  .+...+.+++|+ +
T Consensus       205 d~~v~i~d~~~~---~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~  280 (340)
T d1tbga_         205 DASAKLWDVREG---MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS-K  280 (340)
T ss_dssp             TTEEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC-S
T ss_pred             CceEEEEECCCC---cEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC-C
Confidence            999999999743   3344455789999999999999999999999999999999998877663  456779999999 6


Q ss_pred             CCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        206 NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       206 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ++.+|++|+.||.|++||+.+++++..+.+|..+|++++|+||+++++++.
T Consensus       281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s  331 (340)
T d1tbga_         281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS  331 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEc
Confidence            788999999999999999999999999999999999999999998887753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-37  Score=272.87  Aligned_cols=232  Identities=16%  Similarity=0.159  Sum_probs=202.2

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc--eeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL  102 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  102 (392)
                      +..+|+|++|+|++++||+|+.||.|+|||.++++  .+..+++|.++|.+++|+|++++|++++.|+.|++||+.++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            45789999999999999999999999999998775  5677889999999999999999999999999999999987754


Q ss_pred             ee-----ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc-ceeeeccccceEEEEEEcCCCEEEEeeCCCcE
Q psy17243        103 LY-----SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD-ERFTVSHSEEITCFTVTWDSQYLITGSRDMSL  176 (392)
Q Consensus       103 ~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  176 (392)
                      ..     .+...+.++.|+|+++.|++++.|+.+++|++........ ......|...|.+++|+|++++|++++.|+.|
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence            32     2345789999999999999999999999999875443322 22334578899999999999999999999999


Q ss_pred             EEEEcCCC------------------eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccc
Q psy17243        177 KVWQVVGG------------------KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG  238 (392)
Q Consensus       177 ~i~d~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  238 (392)
                      ++||....                  +.+.....|...|.+++|+ +++++|++++.|+.|++||+.+++.+..+..|..
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee-cccccccccccCCcceEEeeecccceeeeecccc
Confidence            99998542                  3456667889999999999 5788999999999999999999999999999999


Q ss_pred             ceeEEEEcCCCeEEEEcCC
Q psy17243        239 CVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       239 ~v~~~~~~~dg~~~~~~~~  257 (392)
                      +|.+++|+||+++++++.+
T Consensus       245 ~v~s~~fs~d~~~la~g~d  263 (371)
T d1k8kc_         245 PLLAVTFITESSLVAAGHD  263 (371)
T ss_dssp             CEEEEEEEETTEEEEEETT
T ss_pred             cceeeeecCCCCEEEEEcC
Confidence            9999999999999998763

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2e-38  Score=270.35  Aligned_cols=230  Identities=14%  Similarity=0.166  Sum_probs=200.0

Q ss_pred             CCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee-
Q psy17243         25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL-  103 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-  103 (392)
                      +.+.+..++++|+++.|+.++ ++.|.+||+++++....+.+|...|++++|+|++++|++|+.||.|++||+.+++.. 
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            455677899999999999885 667999999999999999999999999999999999999999999999999887532 


Q ss_pred             ----eecccceeEEEEeCCCCEEEEecC--CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCE-EEEeeCCCcE
Q psy17243        104 ----YSALGPSKCLTVTHNMKYIVSGDG--DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY-LITGSRDMSL  176 (392)
Q Consensus       104 ----~~~~~~~~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i  176 (392)
                          ..+..++.+++|+|+++++++++.  +..+++|++.+.+..   .....|...|.+++|+|++++ |++|+.|+.|
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~---~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i  171 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN---GNLTGQARAMNSVDFKPSRPFRIISGSDDNTV  171 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC---BCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             ccccccccCcccccccccccccccccccccccccccccccccccc---ccccccccccccccccccceeeeccccccccc
Confidence                335678999999999999999876  456999999854433   334578899999999999875 7889999999


Q ss_pred             EEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec-------ccccceeEEEEcCCC
Q psy17243        177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA-------GHLGCVTCVKLAGDG  249 (392)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~dg  249 (392)
                      ++||+++++....+..|..+|+++.|+ ++++++++++.|+.|++||+.+++....+.       +|...|++++|+|++
T Consensus       172 ~i~d~~~~~~~~~~~~~~~~i~~v~~~-p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         172 AIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             EEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccccccccccC-ccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence            999999999999999999999999999 678899999999999999999988766543       578899999999999


Q ss_pred             eEEEEcCCCC
Q psy17243        250 TVAMSDLPPS  259 (392)
Q Consensus       250 ~~~~~~~~~~  259 (392)
                      ++++++..++
T Consensus       251 ~~l~tgs~Dg  260 (311)
T d1nr0a1         251 TKIASASADK  260 (311)
T ss_dssp             SEEEEEETTS
T ss_pred             CEEEEEeCCC
Confidence            9999986443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.8e-37  Score=268.40  Aligned_cols=243  Identities=23%  Similarity=0.437  Sum_probs=205.1

Q ss_pred             cCCeEEEEECCCccceeeec------------------cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec
Q psy17243          4 MDCLVNVWQMNSHELQSTME------------------GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK   65 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~------------------~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~   65 (392)
                      .|+.|+|||+.+++.+..+.                  .|...|++++|+|++++|++|+.||.|++||...++.+..+.
T Consensus        81 ~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~  160 (388)
T d1erja_          81 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ  160 (388)
T ss_dssp             CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             eCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccc
Confidence            48999999999888776654                  466779999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc--cceeEEEE-eCCCCEEEEecCCCcEEEEeCCCCCCC
Q psy17243         66 SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL--GPSKCLTV-THNMKYIVSGDGDNSLRIWPTSPQTHK  142 (392)
Q Consensus        66 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~~  142 (392)
                      +|...|.++.+++++..+++++.++.+++||..+........  ....++.+ .+++++|++++.|+.|++||..+....
T Consensus       161 ~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~  240 (388)
T d1erja_         161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV  240 (388)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE
T ss_pred             cccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccc
Confidence            999999999999999999999999999999999887765433  23344444 458899999999999999999865432


Q ss_pred             Ccc----eeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCe------------EEEEEecCCCceeEEEEecCC
Q psy17243        143 DDE----RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK------------LAQVLVGHTDHVSCVAVAVTN  206 (392)
Q Consensus       143 ~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~  206 (392)
                      ...    .....|...|.+++|+|++++|++++.|+.|++||+++++            .......|...|.+++|+ ++
T Consensus       241 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~  319 (388)
T d1erja_         241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QN  319 (388)
T ss_dssp             EEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEEC-GG
T ss_pred             eeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEEC-CC
Confidence            221    1223578899999999999999999999999999997653            234456788999999999 67


Q ss_pred             CcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcC
Q psy17243        207 KSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       207 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  247 (392)
                      +.+|++|+.||.|++||+++++++..+++|.+.|.++++++
T Consensus       320 ~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~  360 (388)
T d1erja_         320 DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN  360 (388)
T ss_dssp             GCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred             CCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEec
Confidence            88999999999999999999999999999999999998764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-37  Score=269.69  Aligned_cols=313  Identities=20%  Similarity=0.319  Sum_probs=230.3

Q ss_pred             eeeeccCCcCe-eEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEc
Q psy17243         19 QSTMEGHLNTV-SCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA   97 (392)
Q Consensus        19 ~~~~~~h~~~v-~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   97 (392)
                      ..+|++|...| +|++|  ++++|++|+.||+|+|||+.+++++.++.+|.++|.+++|+|+ .+|++++.|+.|++|+.
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            45689999886 55555  6789999999999999999999999999999999999999985 58999999999999999


Q ss_pred             CCceeeeeccc-----ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcc--------------------eeeeccc
Q psy17243         98 DNAQLLYSALG-----PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE--------------------RFTVSHS  152 (392)
Q Consensus        98 ~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--------------------~~~~~~~  152 (392)
                      ...+.......     ......+.+++.++++++.|+.|++||+.........                    .....|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence            99877654332     2345667889999999999999999998754322111                    0111122


Q ss_pred             cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeee
Q psy17243        153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF  232 (392)
Q Consensus       153 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  232 (392)
                      ..+  ..+.+++++++++..|+.|++||+++++.+....++...+.++.++ +.+.++++++.|+.|++||++++..+..
T Consensus       162 ~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~  238 (355)
T d1nexb2         162 ASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLENGELMYT  238 (355)
T ss_dssp             SCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ccc--cccccccceeeeecccceeeeeecccccceeeeecccccccccccc-ccceeeecccccceEEeeeccccccccc
Confidence            233  3456678999999999999999999999999999999999999999 6788899999999999999999999999


Q ss_pred             ecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeec
Q psy17243        233 LAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSAS  312 (392)
Q Consensus       233 ~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s  312 (392)
                      +.+|...|.++++++  ++++++..++..                   ..|....+.                 ..... 
T Consensus       239 ~~~h~~~v~~~~~~~--~~l~~~~~dg~i-------------------~iwd~~~~~-----------------~~~~~-  279 (355)
T d1nexb2         239 LQGHTALVGLLRLSD--KFLVSAAADGSI-------------------RGWDANDYS-----------------RKFSY-  279 (355)
T ss_dssp             ECCCSSCCCEEEECS--SEEEEECTTSEE-------------------EEEETTTCC-----------------EEEEE-
T ss_pred             ccccccccccccccc--ceeeeeeccccc-------------------ccccccccc-----------------eeccc-
Confidence            999999999999875  466665433211                   112211100                 00000 


Q ss_pred             cccceecceeccCCCC-CCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCcccc
Q psy17243        313 MEEISKIPIKDNVGSQ-GLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDE  389 (392)
Q Consensus       313 ~d~~~~~~~~~~~~~~-~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d  389 (392)
                              +....... .+++++.+++ + +.|+.|+|||+++++....  ....+...+.+++|+|+ .++++++.|
T Consensus       280 --------~~~~~~~~~~~~~~~~~l~-~-g~d~~i~vwd~~tg~~~~~--~~~~~~~~V~~v~~~~~-~~~~~~s~d  344 (355)
T d1nexb2         280 --------HHTNLSAITTFYVSDNILV-S-GSENQFNIYNLRSGKLVHA--NILKDADQIWSVNFKGK-TLVAAVEKD  344 (355)
T ss_dssp             --------ECTTCCCCCEEEECSSEEE-E-EETTEEEEEETTTCCBCCS--CTTTTCSEEEEEEEETT-EEEEEEESS
T ss_pred             --------ccCCceEEEEEcCCCCEEE-E-EeCCEEEEEECCCCCEEEE--EecCCCCCEEEEEEcCC-eEEEEEECC
Confidence                    01111111 4567777655 5 4588999999998876332  22334556778999997 456665554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-37  Score=266.52  Aligned_cols=324  Identities=22%  Similarity=0.333  Sum_probs=235.8

Q ss_pred             EECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCC
Q psy17243         11 WQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG   90 (392)
Q Consensus        11 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   90 (392)
                      |+..+.+..+.|++|.+.|.+ +++++|++|+||+.||+|+|||+++++++.++.+|...|.+++|+|+  +|++++.|+
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            566677888899999999865 46678899999999999999999999999999999999999999875  999999999


Q ss_pred             eEEEEEcCCceeeeecccce-eEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEE
Q psy17243         91 VIAVWVADNAQLLYSALGPS-KCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLIT  169 (392)
Q Consensus        91 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  169 (392)
                      .+++|+.............. ...........+..+..|+.+.+|+..+...   .........  ......+....+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~  152 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC---LHVLMGHVA--AVRCVQYDGRRVVS  152 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE---EEEEECCSS--CEEEEEECSSCEEE
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccc---eeeeecccc--cceeeccccceeee
Confidence            99999999887765544332 2233344566788899999999999874432   222212222  22334556778999


Q ss_pred             eeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCC
Q psy17243        170 GSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDG  249 (392)
Q Consensus       170 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg  249 (392)
                      ++.|+.|++||.+..+.+..+.+|...+..+.+   ++.++++++.||.|++||++.++++..+.+|...+.++++++  
T Consensus       153 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--  227 (342)
T d2ovrb2         153 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--  227 (342)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--
T ss_pred             ecCCCeEEEeecccceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--
Confidence            999999999999999999999999887776655   477899999999999999999999999999999999888765  


Q ss_pred             eEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCC
Q psy17243        250 TVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQG  329 (392)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~  329 (392)
                      .+++++..++.+                   ..|.........               .+.+.....        .....
T Consensus       228 ~~l~s~s~d~~i-------------------~iwd~~~~~~~~---------------~~~~~~~~~--------~~~~~  265 (342)
T d2ovrb2         228 NILVSGNADSTV-------------------KIWDIKTGQCLQ---------------TLQGPNKHQ--------SAVTC  265 (342)
T ss_dssp             TEEEEEETTSCE-------------------EEEETTTCCEEE---------------EECSTTSCS--------SCEEE
T ss_pred             CEEEEEcCCCEE-------------------EEEecccccccc---------------cccccceee--------eceee
Confidence            466665433221                   111111100000               000000000        00002


Q ss_pred             CChhhhhhhcccChHHHHHHhhCCCCCCcccccc--ccccccCccccccccCccCCCCccccc
Q psy17243        330 LGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEH--SMSKQNSYSSRQHSVDTDELSSPVDEF  390 (392)
Q Consensus       330 ~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~--~~~~~~~~~~~~fspdg~~l~~~~~d~  390 (392)
                      +++++.+++ +++.||.|+|||+.+++....+..  ...+...+.+++|+||+++||+|+.|.
T Consensus       266 ~~~~~~~~~-s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         266 LQFNKNFVI-TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             EEECSSEEE-EEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             cccCCCeeE-EEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            445566777 899999999999998877443321  122344577799999999999988774

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-34  Score=253.53  Aligned_cols=222  Identities=15%  Similarity=0.119  Sum_probs=187.1

Q ss_pred             CCccCCeEEEEECCCcc--ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCcee--EEecccccceEEEEE
Q psy17243          1 MGGMDCLVNVWQMNSHE--LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV--STFKSHQSTILAVAV   76 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~   76 (392)
                      +|+.||.|+|||+++++  .+..+++|.++|.+++|+|++++|++|+.|++|+|||++++...  ..+..|...|.+++|
T Consensus        24 ~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~  103 (371)
T d1k8kc_          24 ICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW  103 (371)
T ss_dssp             EECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE
T ss_pred             EEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccc
Confidence            47889999999997664  66778999999999999999999999999999999999877644  445678899999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCceee-------eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCC------
Q psy17243         77 LSDSRRVVTSDKAGVIAVWVADNAQLL-------YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKD------  143 (392)
Q Consensus        77 ~~~~~~l~~~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~------  143 (392)
                      +|+++.|++++.|+.+++|+++.....       ..+...+.+++|+|++++|++++.|+.|++|+........      
T Consensus       104 ~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~  183 (371)
T d1k8kc_         104 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP  183 (371)
T ss_dssp             CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBT
T ss_pred             ccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccc
Confidence            999999999999999999988765422       1234578899999999999999999999999986432211      


Q ss_pred             ---------cceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEec
Q psy17243        144 ---------DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       144 ---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  214 (392)
                               .......|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..|..+|.+++|+ +++.+|++|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs-~d~~~la~g~  262 (371)
T d1k8kc_         184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI-TESSLVAAGH  262 (371)
T ss_dssp             TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE-ETTEEEEEET
T ss_pred             ccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeec-CCCCEEEEEc
Confidence                     122234677889999999999999999999999999999999999999999999999999 5677777665


Q ss_pred             CCCeEEEEEC
Q psy17243        215 KDSNLIVWDM  224 (392)
Q Consensus       215 ~dg~i~iwd~  224 (392)
                       |+.+++|..
T Consensus       263 -d~~~~~~~~  271 (371)
T d1k8kc_         263 -DCFPVLFTY  271 (371)
T ss_dssp             -TSSCEEEEE
T ss_pred             -CCceEEEEe
Confidence             777666554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.1e-34  Score=244.64  Aligned_cols=221  Identities=19%  Similarity=0.314  Sum_probs=190.1

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCc----eeEEe------------
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS----VVSTF------------   64 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~------------   64 (392)
                      ||+.||.|+|||+.+++.+..+..|..+|.+++|+|+++++++|+.|+.+.+|+.....    ....+            
T Consensus        72 sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (340)
T d1tbga_          72 SASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF  151 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEE
T ss_pred             EEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccc
Confidence            58899999999999999999999999999999999999999999999999999875331    11111            


Q ss_pred             -----------------------------cccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeec---ccceeE
Q psy17243         65 -----------------------------KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA---LGPSKC  112 (392)
Q Consensus        65 -----------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~  112 (392)
                                                   ..+...+....+.+...++++++.|+.|++||+++++.+..+   ..++.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~  231 (340)
T d1tbga_         152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA  231 (340)
T ss_dssp             EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEE
Confidence                                         123445677788888999999999999999999999887654   457899


Q ss_pred             EEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec
Q psy17243        113 LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG  192 (392)
Q Consensus       113 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  192 (392)
                      ++|+|++++|++++.|+.|++||+......... ....+...+.+++|+|++++|++|+.||.|++||+.+++++..+.+
T Consensus       232 v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  310 (340)
T d1tbga_         232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEECCCCCEEEEEeCCCeEEEEeeccccccccc-ccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC
Confidence            999999999999999999999999743322111 1235667899999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEecCCCcEEEEecCCCeEEEEE
Q psy17243        193 HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD  223 (392)
Q Consensus       193 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd  223 (392)
                      |..+|++++|+ +++.+|++|+.||.|+|||
T Consensus       311 H~~~V~~l~~s-~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         311 HDNRVSCLGVT-DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSSCEEEEEEC-TTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEEe-CCCCEEEEEccCCEEEEeC
Confidence            99999999999 6788999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-32  Score=238.82  Aligned_cols=247  Identities=21%  Similarity=0.360  Sum_probs=200.2

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccc--cceEEEEEec
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQ--STILAVAVLS   78 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~   78 (392)
                      ||+.||+|+|||+.+++.+.++++|.++|++++|+|++ +|++|+.|++|++|+....+.........  .......+.+
T Consensus        28 tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (355)
T d1nexb2          28 TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK  106 (355)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET
T ss_pred             EEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccccccccccccccccccccccccccccc
Confidence            58899999999999999999999999999999999864 79999999999999999988776665433  3456667788


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeeeccc------------------------ceeEEEEeCCCCEEEEecCCCcEEEE
Q psy17243         79 DSRRVVTSDKAGVIAVWVADNAQLLYSALG------------------------PSKCLTVTHNMKYIVSGDGDNSLRIW  134 (392)
Q Consensus        79 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~l~~~~~d~~i~~~  134 (392)
                      +++.+++++.|+.|++||+.+.........                        ........++++.++++..|+.|++|
T Consensus       107 ~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~  186 (355)
T d1nexb2         107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW  186 (355)
T ss_dssp             TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred             ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeee
Confidence            999999999999999999987654322110                        11234556788999999999999999


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEec
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      |+.+.   ........+...+.++.++|+++++++++.|+.|++||++++..+..+.+|...|.+++++   +++|++++
T Consensus       187 d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~---~~~l~~~~  260 (355)
T d1nexb2         187 DVAQM---KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS---DKFLVSAA  260 (355)
T ss_dssp             ETTTT---EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC---SSEEEEEC
T ss_pred             ecccc---cceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc---cceeeeee
Confidence            99743   3334445677889999999999999999999999999999999999999999999999987   46899999


Q ss_pred             CCCeEEEEECCCCceeeeecccccceeEE-EEcCCCeEEEEcC
Q psy17243        215 KDSNLIVWDMETGGEEHFLAGHLGCVTCV-KLAGDGTVAMSDL  256 (392)
Q Consensus       215 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~~~dg~~~~~~~  256 (392)
                      .||.|++||++++....  ..|...+.++ .+++++.+++++.
T Consensus       261 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~  301 (355)
T d1nexb2         261 ADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSGS  301 (355)
T ss_dssp             TTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEEE
T ss_pred             cccccccccccccceec--ccccCCceEEEEEcCCCCEEEEEe
Confidence            99999999999876543  3455555544 5677888777764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-32  Score=229.85  Aligned_cols=231  Identities=24%  Similarity=0.440  Sum_probs=192.4

Q ss_pred             ceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEc
Q psy17243         18 LQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA   97 (392)
Q Consensus        18 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~   97 (392)
                      .+.....|...|+|++|  ++++||+|+.||+|+|||+++++++.++.+|...|.+++|  ++++|++++.|+.|++|++
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence            34455678889998765  7889999999999999999999999999999999999887  6789999999999999999


Q ss_pred             CCceeeeeccc-ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcE
Q psy17243         98 DNAQLLYSALG-PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSL  176 (392)
Q Consensus        98 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  176 (392)
                      ..+........ ........+....++++..++.+.+|+...............|...+..+.+.  ...+++++.|+.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i  160 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI  160 (293)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEE
T ss_pred             ccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCce
Confidence            99877655443 33455566777889999999999999998665555555556777888777665  5578899999999


Q ss_pred             EEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       177 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ++||+++++.+..+.++...+..+.++   +.++++++.||.|++||+++.+.+..+.++...+..  +++++.+++++.
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~  235 (293)
T d1p22a2         161 KVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGA  235 (293)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEE
T ss_pred             eeecCCCCcEEEEEcccccccccccCC---CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEc
Confidence            999999999999999999999888876   568999999999999999999999999888888765  445666777765


Q ss_pred             CCC
Q psy17243        257 PPS  259 (392)
Q Consensus       257 ~~~  259 (392)
                      .++
T Consensus       236 ~dg  238 (293)
T d1p22a2         236 YDG  238 (293)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=231.02  Aligned_cols=249  Identities=26%  Similarity=0.444  Sum_probs=198.1

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEE-------
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILA-------   73 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-------   73 (392)
                      ||+.||+|+|||+.++++++++.+|...|.+++|+|+  +|++++.|+.+++|+............+...+..       
T Consensus        32 sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (342)
T d2ovrb2          32 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR  109 (342)
T ss_dssp             EEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTE
T ss_pred             EEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeeccccc
Confidence            5889999999999999999999999999999999975  8999999999999998766554443322222221       


Q ss_pred             -------------------------------EEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc-ceeEEEEeCCCCE
Q psy17243         74 -------------------------------VAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG-PSKCLTVTHNMKY  121 (392)
Q Consensus        74 -------------------------------~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~  121 (392)
                                                     ..+.+....+++++.++.+++||....+.+..+.. ......+.+++.+
T Consensus       110 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (342)
T d2ovrb2         110 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH  189 (342)
T ss_dssp             EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSE
T ss_pred             ccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCE
Confidence                                           12233455677888888888888888777666554 3345667778999


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec---CCCcee
Q psy17243        122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG---HTDHVS  198 (392)
Q Consensus       122 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~  198 (392)
                      +++++.||.|++||++..   ........|...+.+++++  +++|++++.|+.|++||+...+....+..   |...+.
T Consensus       190 l~s~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  264 (342)
T d2ovrb2         190 VVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT  264 (342)
T ss_dssp             EEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEE
T ss_pred             EEEEeCCCeEEEeecccc---eeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeecee
Confidence            999999999999999743   3444555788888887765  56999999999999999999988887765   445566


Q ss_pred             EEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec-----ccccceeEEEEcCCCeEEEEcCCCC
Q psy17243        199 CVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA-----GHLGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       199 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      ++.++   ++++++|+.||.|++||+++++.+..+.     +|...|++++|+|++.+++++..++
T Consensus       265 ~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         265 CLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             EEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             ecccC---CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            66654   5789999999999999999999887764     5777899999999999999987553

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-32  Score=235.98  Aligned_cols=232  Identities=16%  Similarity=0.209  Sum_probs=186.2

Q ss_pred             eEEEEECCCc--cceeeeccC-CcCeeEEEecC--CCCeEEEEeCCCeEEEEeCCCCcee--------EEecccccceEE
Q psy17243          7 LVNVWQMNSH--ELQSTMEGH-LNTVSCVAISP--NSIFAVSGSEDNTAKVWGLTLGSVV--------STFKSHQSTILA   73 (392)
Q Consensus         7 ~i~vwd~~~~--~~~~~~~~h-~~~v~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~--------~~~~~~~~~v~~   73 (392)
                      .|+.|+....  .....+.+| ...|++++|+|  ++.+|++|+.||+|+|||+..++..        ..+..|.++|.+
T Consensus        41 ~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~  120 (325)
T d1pgua1          41 FVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD  120 (325)
T ss_dssp             EEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEE
T ss_pred             EEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEE
Confidence            4566665433  345567777 46799999998  5689999999999999998765432        234567889999


Q ss_pred             EEEecCCCEEEEEeC--CCeEEEEEcCCceeeeecc---cceeEEEEeCCCCE-EEEecCCCcEEEEeCCCCCCCCccee
Q psy17243         74 VAVLSDSRRVVTSDK--AGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKY-IVSGDGDNSLRIWPTSPQTHKDDERF  147 (392)
Q Consensus        74 ~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~  147 (392)
                      ++|+++++++++++.  ++.+.+|+.++++.+..+.   ..+.+++|+|++.+ +++++.|+.+++||....+.......
T Consensus       121 v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~  200 (325)
T d1pgua1         121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT  200 (325)
T ss_dssp             EEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred             EEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc
Confidence            999999999988764  6789999999988776654   57889999998875 67789999999999875443333333


Q ss_pred             eeccccceEEEEEEcC-CCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEec--CCCcEEEEecCCCeEEEEEC
Q psy17243        148 TVSHSEEITCFTVTWD-SQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAV--TNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       148 ~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~  224 (392)
                      ...|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.+|..++..+.|++  +++.+|++++.|+.|+|||+
T Consensus       201 ~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred             ccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence            3467788999999997 68999999999999999999999999999888876655542  46789999999999999999


Q ss_pred             CCCceeeeeccccc
Q psy17243        225 ETGGEEHFLAGHLG  238 (392)
Q Consensus       225 ~~~~~~~~~~~~~~  238 (392)
                      ++++++..+..|..
T Consensus       281 ~~~~~~~~~~~~~~  294 (325)
T d1pgua1         281 TTSKCVQKWTLDKQ  294 (325)
T ss_dssp             TTTEEEEEEECCTT
T ss_pred             CCCCEEEEEEecCC
Confidence            99998887765544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-32  Score=231.85  Aligned_cols=252  Identities=19%  Similarity=0.264  Sum_probs=196.5

Q ss_pred             CCccCCeEEEEECCCccceeeec-cCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce---eEEecccccceEEEEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTME-GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV---VSTFKSHQSTILAVAV   76 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~   76 (392)
                      ||+.||.|++||+++++..+.+. .|...|++++|+|+++ +++++.|+.+++|+......   ......+...+.+++|
T Consensus        29 s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (299)
T d1nr0a2          29 SADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV  107 (299)
T ss_dssp             EEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE
T ss_pred             EEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCCcccccccccccccccccccccc
Confidence            57899999999999999888874 6999999999999987 45666799999999865432   1223346778999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         77 LSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        77 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      +|+++.+++++ ++.+.+|+....... .......+++++|+++++++++.|+.|++||++.....  ......|...|+
T Consensus       108 s~~g~~~~~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~--~~~~~~~~~~i~  183 (299)
T d1nr0a2         108 SADGDIAVAAC-YKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS--EVKTIVHPAEIT  183 (299)
T ss_dssp             CTTSSCEEEEE-SSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE--EEEEEECSSCEE
T ss_pred             ccccccccccc-ccccccccccccccc-cccccccccccccccccccccccccccccccccccccc--cccccccccccc
Confidence            99998776655 568999986543322 33446788999999999999999999999999743221  223346889999


Q ss_pred             EEEEEcCCCEEEEeeCCCcEEEEEcCCCeEE---EEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee--
Q psy17243        157 CFTVTWDSQYLITGSRDMSLKVWQVVGGKLA---QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH--  231 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--  231 (392)
                      +++|+|++++|++++.|+.|++||+.++...   ..+.+|...|++++|+ +++.+|++|+.||.|++||+++++...  
T Consensus       184 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  262 (299)
T d1nr0a2         184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS-PDNVRLATGSLDNSVIVWNMNKPSDHPII  262 (299)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccceEEEcCCCEEEEEECCCCCcceEE
Confidence            9999999999999999999999999877554   3456789999999999 688899999999999999998875433  


Q ss_pred             eeccc-ccceeEEEEcCCCeEEEEcCCCC
Q psy17243        232 FLAGH-LGCVTCVKLAGDGTVAMSDLPPS  259 (392)
Q Consensus       232 ~~~~~-~~~v~~~~~~~dg~~~~~~~~~~  259 (392)
                      ....| ...+.++.| +++.+++++..++
T Consensus       263 ~~~~~~~~~v~~~~~-~~~~~l~s~s~D~  290 (299)
T d1nr0a2         263 IKGAHAMSSVNSVIW-LNETTIVSAGQDS  290 (299)
T ss_dssp             ETTSSTTSCEEEEEE-EETTEEEEEETTS
T ss_pred             EecCCCCCcEEEEEE-CCCCEEEEEeCCC
Confidence            33333 345666655 4556677765443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-32  Score=232.39  Aligned_cols=298  Identities=12%  Similarity=0.087  Sum_probs=209.1

Q ss_pred             cceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeE---EecccccceEEEEEecCC-CEEEEEeCCCeE
Q psy17243         17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS---TFKSHQSTILAVAVLSDS-RRVVTSDKAGVI   92 (392)
Q Consensus        17 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i   92 (392)
                      |+++..++|++.|++|+|+|++++||+|+.||+|+|||++++....   ....|..+|.+++|+|++ .+|++|+.|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            5677788999999999999999999999999999999997665432   233599999999999875 578999999999


Q ss_pred             EEEEcCCceeeeeccc----ceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeee---ccccceEEEEEEcCCC
Q psy17243         93 AVWVADNAQLLYSALG----PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV---SHSEEITCFTVTWDSQ  165 (392)
Q Consensus        93 ~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~  165 (392)
                      ++|++...........    ........++...+++++.++.+++||++............   ........+.+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            9999988766544332    23455667788999999999999999986433322221111   1223445667788899


Q ss_pred             EEEEeeCCCcEEEEEcCCCeEE---EEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeE
Q psy17243        166 YLITGSRDMSLKVWQVVGGKLA---QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTC  242 (392)
Q Consensus       166 ~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  242 (392)
                      .+++++.|+.|++||++..+..   .....+...+.+..+.+.++..+++++.||.+.+|+............       
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~-------  234 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK-------  234 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT-------
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccc-------
Confidence            9999999999999999876432   233445566777788777888999999999999999875443221110       


Q ss_pred             EEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceeccee
Q psy17243        243 VKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIK  322 (392)
Q Consensus       243 ~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~  322 (392)
                             .........             ...           ..+|...                              
T Consensus       235 -------~~~~~~~~~-------------~~~-----------~~~~~~~------------------------------  253 (342)
T d1yfqa_         235 -------RFAFRCHRL-------------NLK-----------DTNLAYP------------------------------  253 (342)
T ss_dssp             -------CEEEECCCC-------------CTT-----------CCSSCCC------------------------------
T ss_pred             -------cceeeeeee-------------ccC-----------CCccccc------------------------------
Confidence                   000000000             000           0000000                              


Q ss_pred             ccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccccccccCccCCCCcccc
Q psy17243        323 DNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSSRQHSVDTDELSSPVDE  389 (392)
Q Consensus       323 ~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~fspdg~~l~~~~~d  389 (392)
                        ....+|+|++++|| ||+.||.|+|||+.+.++.    ..+........++|+|+|++||+++.|
T Consensus       254 --v~~l~~sp~~~~la-sg~~Dg~v~vWD~~~~~~l----~~~~~~~~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         254 --VNSIEFSPRHKFLY-TAGSDGIISCWNLQTRKKI----KNFAKFNEDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             --EEEEEECTTTCCEE-EEETTSCEEEEETTTTEEE----EECCCCSSSEEEEEEECSSEEEEEEEC
T ss_pred             --ceeEEecCCccEEE-EECCCCEEEEEECCCCcEE----EEecCCCCCEEEEEEeCCCEEEEEEcC
Confidence              00124889999998 9999999999999887652    223333333448999999999876555

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-32  Score=230.62  Aligned_cols=267  Identities=13%  Similarity=0.169  Sum_probs=201.9

Q ss_pred             ccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         16 HELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        16 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      .++++++++|..+|++++|+|    |++|+.||+|++||+.++     ...|...|.++.++++ ..+++++.|+++++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w   72 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEET
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeeccccccc
Confidence            578899999999999999987    899999999999998754     3579999999999875 468999999999999


Q ss_pred             EcCCceeeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCC-
Q psy17243         96 VADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM-  174 (392)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-  174 (392)
                      ++...+    +...+.++.+++++..++++. ++.+.+|+.......   .. ......+  .+++++++.+++++.++ 
T Consensus        73 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~-~~~~~~~--~~~~~~~~~~~v~~~~~~  141 (287)
T d1pgua2          73 GITKHE----FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDII---KS-VRLNSPG--SAVSLSQNYVAVGLEEGN  141 (287)
T ss_dssp             TEEEEE----CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEE---EE-EECSSCE--EEEEECSSEEEEEETTTS
T ss_pred             cccccc----cccceeeeeeccCCceEEEee-cccceeeeccceeee---ee-cccccee--eeeeccCcceeeeccccc
Confidence            886543    344567788888887777655 556778887643322   21 1223333  45677888888887765 


Q ss_pred             cEEEEEcCCCeEEEEEe-cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee-eecccccceeEEEEcCCCeEE
Q psy17243        175 SLKVWQVVGGKLAQVLV-GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH-FLAGHLGCVTCVKLAGDGTVA  252 (392)
Q Consensus       175 ~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~dg~~~  252 (392)
                      .+++|++...+....+. .|...+++++|+ +++.+|++|+.||.|++||+.+++... .+..|...|.+++|+|++...
T Consensus       142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         142 TIQVFKLSDLEVSFDLKTPLRAKPSYISIS-PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             eeeeeeccccceeeeeeeccCCceeEEEec-cCccccccccccccccceeecccccccccccccccccceeeeccccccc
Confidence            79999998766655543 477889999999 678899999999999999999988765 467899999999999988765


Q ss_pred             EEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccC-------
Q psy17243        253 MSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNV-------  325 (392)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~-------  325 (392)
                      ....                                              .++.++++++.|+.+++|..+..       
T Consensus       221 ~~~~----------------------------------------------~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~  254 (287)
T d1pgua2         221 NEEE----------------------------------------------IEEDLVATGSLDTNIFIYSVKRPMKIIKAL  254 (287)
T ss_dssp             ---C----------------------------------------------CSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred             cccc----------------------------------------------CCCCeeEeecCCCeEEEEECCCCCeEEEEe
Confidence            5432                                              12346788888888888865321       


Q ss_pred             -CCC------CCChhhhhhhcccChHHHHHHhhC
Q psy17243        326 -GSQ------GLGPEQAALAQSQHFDQLEALWNK  352 (392)
Q Consensus       326 -~~~------~~s~dg~~la~s~~~d~~i~~Wd~  352 (392)
                       +|.      +|+|+++ |+ |++.|+.|++|++
T Consensus       255 ~~h~~~V~~v~~~~~~~-l~-s~g~D~~v~iW~i  286 (287)
T d1pgua2         255 NAHKDGVNNLLWETPST-LV-SSGADACIKRWNV  286 (287)
T ss_dssp             TSSTTCEEEEEEEETTE-EE-EEETTSCEEEEEE
T ss_pred             CCCCCCeEEEEECCCCE-EE-EEECCCeEEEEEE
Confidence             222      7788875 55 7888999999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7e-31  Score=225.03  Aligned_cols=221  Identities=15%  Similarity=0.165  Sum_probs=179.8

Q ss_pred             CCccCCeEEEEECCCcccee--------eeccCCcCeeEEEecCCCCeEEEEeC--CCeEEEEeCCCCceeEEecccccc
Q psy17243          1 MGGMDCLVNVWQMNSHELQS--------TMEGHLNTVSCVAISPNSIFAVSGSE--DNTAKVWGLTLGSVVSTFKSHQST   70 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~--------~~~~h~~~v~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~   70 (392)
                      +|+.||+|+|||+..++...        .+..|.++|.+++|++++++|++++.  ++.+++|+.++++.+..+.+|...
T Consensus        82 sgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  161 (325)
T d1pgua1          82 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQR  161 (325)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSC
T ss_pred             EEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccc
Confidence            47899999999997655433        24568899999999999999887754  678999999999999999999999


Q ss_pred             eEEEEEecCCCE-EEEEeCCCeEEEEEcCCceeeeec------ccceeEEEEeCC-CCEEEEecCCCcEEEEeCCCCCCC
Q psy17243         71 ILAVAVLSDSRR-VVTSDKAGVIAVWVADNAQLLYSA------LGPSKCLTVTHN-MKYIVSGDGDNSLRIWPTSPQTHK  142 (392)
Q Consensus        71 v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~  142 (392)
                      |.+++|+|+++. +++++.|+.+++||....+.....      ...+.+++|+|+ +.++++++.|+.|++||+++.+  
T Consensus       162 v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--  239 (325)
T d1pgua1         162 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--  239 (325)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--
T ss_pred             cccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc--
Confidence            999999999875 678999999999999887664432      346889999996 6889999999999999997543  


Q ss_pred             CcceeeeccccceEEEEEE---cCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCc--eeEEEEecCCCcEEEEecCCC
Q psy17243        143 DDERFTVSHSEEITCFTVT---WDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDH--VSCVAVAVTNKSLVVSGSKDS  217 (392)
Q Consensus       143 ~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg  217 (392)
                       .......|..++..+.|+   |++++|++++.|+.|+|||+++++++..+..|...  +..+++.+..+.+|++++.||
T Consensus       240 -~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg  318 (325)
T d1pgua1         240 -FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG  318 (325)
T ss_dssp             -EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred             -ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCC
Confidence             333334566666555554   68899999999999999999999999988776654  345555545566889999999


Q ss_pred             eEEEEEC
Q psy17243        218 NLIVWDM  224 (392)
Q Consensus       218 ~i~iwd~  224 (392)
                      .|++||+
T Consensus       319 ~i~vwdl  325 (325)
T d1pgua1         319 TLNFYEL  325 (325)
T ss_dssp             CEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=8.6e-31  Score=220.52  Aligned_cols=236  Identities=16%  Similarity=0.171  Sum_probs=191.4

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ||+.||+|++||+.++.     .+|...|.++++++++ .+++++.|+++++|++...+       ....+..+.+.+++
T Consensus        26 sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~   92 (287)
T d1pgua2          26 SGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDG   92 (287)
T ss_dssp             EEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSS
T ss_pred             EEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeeccccccccccccc-------cccceeeeeeccCC
Confidence            58999999999987643     5799999999999765 57899999999999865321       34457788888877


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCC-cEEEEeCCCCCCCCcceeeeccccceEEEE
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDN-SLRIWPTSPQTHKDDERFTVSHSEEITCFT  159 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~  159 (392)
                      ..+++ +.++.+.+|+..+++.+..........++++++..+++++.++ .+++|++....  ........+...+++++
T Consensus        93 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~v~~~~  169 (287)
T d1pgua2          93 FTAVL-TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE--VSFDLKTPLRAKPSYIS  169 (287)
T ss_dssp             EEEEE-ETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE--EEEECSSCCSSCEEEEE
T ss_pred             ceEEE-eecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccc--eeeeeeeccCCceeEEE
Confidence            65555 5667789999999988887776667778888899988888775 79999986322  12222335678899999


Q ss_pred             EEcCCCEEEEeeCCCcEEEEEcCCCeEEE-EEecCCCceeEEEEecC---------CCcEEEEecCCCeEEEEECCC-Cc
Q psy17243        160 VTWDSQYLITGSRDMSLKVWQVVGGKLAQ-VLVGHTDHVSCVAVAVT---------NKSLVVSGSKDSNLIVWDMET-GG  228 (392)
Q Consensus       160 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~---------~~~~l~~~~~dg~i~iwd~~~-~~  228 (392)
                      |+|++.+|++++.||.|++||+.+++... .+.+|..+|.+++|+|.         ++.+|++|+.|++|++||+++ .+
T Consensus       170 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~  249 (287)
T d1pgua2         170 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK  249 (287)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC
T ss_pred             eccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe
Confidence            99999999999999999999999988654 46789999999999863         467899999999999999987 45


Q ss_pred             eeeeecccccceeEEEEcCCCeEE
Q psy17243        229 EEHFLAGHLGCVTCVKLAGDGTVA  252 (392)
Q Consensus       229 ~~~~~~~~~~~v~~~~~~~dg~~~  252 (392)
                      .+..+.+|...|++++|+|+++++
T Consensus       250 ~~~~~~~h~~~V~~v~~~~~~~l~  273 (287)
T d1pgua2         250 IIKALNAHKDGVNNLLWETPSTLV  273 (287)
T ss_dssp             CEEETTSSTTCEEEEEEEETTEEE
T ss_pred             EEEEeCCCCCCeEEEEECCCCEEE
Confidence            667778999999999999988643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=8.1e-31  Score=230.78  Aligned_cols=211  Identities=17%  Similarity=0.181  Sum_probs=151.5

Q ss_pred             eeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce------eEEecccccceEEEEEe---c----CCCEEEEE
Q psy17243         20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV------VSTFKSHQSTILAVAVL---S----DSRRVVTS   86 (392)
Q Consensus        20 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~v~~~~~~---~----~~~~l~~~   86 (392)
                      ...++|.+.|.++++++  ++|++++.|++|+|||..+.+.      ......|...+..+...   +    +...++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            34578999999999875  5899999999999999765532      22222344443333321   1    23467889


Q ss_pred             eCCCeEEEEEcCCceeeee-------------cccceeEEEEeCC-----CCEEEEecCCCcEEEEeCCCCCCCC-----
Q psy17243         87 DKAGVIAVWVADNAQLLYS-------------ALGPSKCLTVTHN-----MKYIVSGDGDNSLRIWPTSPQTHKD-----  143 (392)
Q Consensus        87 ~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~~~~~~-----  143 (392)
                      +.||.|++|++........             .......+++.++     +.++++++.||.+++|++.......     
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            9999999998764422110             1123445666654     4689999999999999985321100     


Q ss_pred             ----------cceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEE------ecCCCceeEEEEecCCC
Q psy17243        144 ----------DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL------VGHTDHVSCVAVAVTNK  207 (392)
Q Consensus       144 ----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~v~~~~~~~~~~  207 (392)
                                .......+...+.+++|+|++ +|++|+.|++|++||+.+++++..+      .+|..+|++++|+ +++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-pdg  243 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQG  243 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SST
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc-ccc
Confidence                      001112345568899999987 8999999999999999999877654      4688999999999 688


Q ss_pred             cEEEEecCCC---eEEEEECCCCceeeeec
Q psy17243        208 SLVVSGSKDS---NLIVWDMETGGEEHFLA  234 (392)
Q Consensus       208 ~~l~~~~~dg---~i~iwd~~~~~~~~~~~  234 (392)
                      .+|++|+.|+   .|++||+++++++..+.
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~  273 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIGSLS  273 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             ceeeeecCCCCcceeeecccccceeeeeec
Confidence            9999999887   49999999998877664

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.4e-31  Score=234.18  Aligned_cols=252  Identities=14%  Similarity=0.163  Sum_probs=188.8

Q ss_pred             CCccCCeEEEEECCCccc------eeeeccCCcCeeEEEe------cC-CCCeEEEEeCCCeEEEEeCCCCceeEEe---
Q psy17243          1 MGGMDCLVNVWQMNSHEL------QSTMEGHLNTVSCVAI------SP-NSIFAVSGSEDNTAKVWGLTLGSVVSTF---   64 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~------~~~~~~h~~~v~~~~~------~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~---   64 (392)
                      ||+.|++|+|||..+.+.      ......|...+..+..      +. ++.++++++.||.|++|++........+   
T Consensus        29 S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~  108 (393)
T d1sq9a_          29 SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE  108 (393)
T ss_dssp             EEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE
T ss_pred             EEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeecc
Confidence            578999999999865432      1222234444333322      22 2357889999999999997644321111   


Q ss_pred             -------cccccceEEEEEecC-----CCEEEEEeCCCeEEEEEcCCcee--------------e-------eeccccee
Q psy17243         65 -------KSHQSTILAVAVLSD-----SRRVVTSDKAGVIAVWVADNAQL--------------L-------YSALGPSK  111 (392)
Q Consensus        65 -------~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~--------------~-------~~~~~~~~  111 (392)
                             ..+...+..++|.++     +.++++++.||.+++|++.....              +       ......+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (393)
T d1sq9a_         109 KLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT  188 (393)
T ss_dssp             EECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCC
T ss_pred             ccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEE
Confidence                   124566788888775     35789999999999999853210              0       01112467


Q ss_pred             EEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcc---eeeeccccceEEEEEEcCCCEEEEeeCCCc---EEEEEcCCCe
Q psy17243        112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE---RFTVSHSEEITCFTVTWDSQYLITGSRDMS---LKVWQVVGGK  185 (392)
Q Consensus       112 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~  185 (392)
                      +++++|++ +|++|+.|+.|++||+.+.+.....   ....+|..+|.+++|+|++++|++|+.|++   |++||+++++
T Consensus       189 ~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~  267 (393)
T d1sq9a_         189 SVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE  267 (393)
T ss_dssp             EEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             EEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccce
Confidence            89999987 8899999999999999865432211   223468899999999999999999998874   8999999998


Q ss_pred             EEEEEe-------------cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccccee----EEEEcCC
Q psy17243        186 LAQVLV-------------GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT----CVKLAGD  248 (392)
Q Consensus       186 ~~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~----~~~~~~d  248 (392)
                      .+..+.             +|...|++++|+ +++++|++++.|++|++||+++++++..+.+|...|.    .++|+++
T Consensus       268 ~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs-pd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~  346 (393)
T d1sq9a_         268 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFN-DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH  346 (393)
T ss_dssp             EEEEECBC--------CCBSBSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTT
T ss_pred             eeeeeccccccccceeeeecccCceeeeccC-CCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCC
Confidence            877764             799999999999 6889999999999999999999999999999998876    4788888


Q ss_pred             CeEEEE
Q psy17243        249 GTVAMS  254 (392)
Q Consensus       249 g~~~~~  254 (392)
                      +..++.
T Consensus       347 ~~~~~~  352 (393)
T d1sq9a_         347 GDSLAE  352 (393)
T ss_dssp             SCBCSS
T ss_pred             CCEEEE
Confidence            877654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-29  Score=209.93  Aligned_cols=232  Identities=27%  Similarity=0.502  Sum_probs=185.5

Q ss_pred             CCccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ||+.||+|+|||+++++.++++++|.+.|++++|  ++++|++|+.|+.|++|++..+........+....  ..+.+..
T Consensus        30 sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  105 (293)
T d1p22a2          30 SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNN  105 (293)
T ss_dssp             EEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--EEEECCT
T ss_pred             EEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccc--ccccccc
Confidence            5899999999999999999999999999999987  56799999999999999999998877776544433  3455567


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeee---e---cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccc
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLY---S---ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~---~---~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  154 (392)
                      ..++++..++.+.+|+........   .   ....+.+  ..+....+++++.|+.|++||.++.+   .......+...
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~s~d~~i~~~d~~~~~---~~~~~~~~~~~  180 (293)
T d1p22a2         106 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV--VDFDDKYIVSASGDRTIKVWNTSTCE---FVRTLNGHKRG  180 (293)
T ss_dssp             TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE--EEEETTEEEEEETTSEEEEEETTTCC---EEEEEECCSSC
T ss_pred             cceeecccccceeEeecccccccccccccccccccccc--ceecccccccccCCCceeeecCCCCc---EEEEEcccccc
Confidence            789999999999999998765322   1   2223333  34455678899999999999997443   33344566777


Q ss_pred             eEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC--------
Q psy17243        155 ITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET--------  226 (392)
Q Consensus       155 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------  226 (392)
                      +..+.++  +.++++++.|+.|++||+++.+.+..+.+|...+..+.   .++.+|++++.||.|++||+.+        
T Consensus       181 v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  255 (293)
T d1p22a2         181 IACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR---FDNKRIVSGAYDGKIKVWDLVAALDPRAPA  255 (293)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE---CCSSEEEEEETTSCEEEEEHHHHTSTTSCT
T ss_pred             cccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeecc---ccceEEEEEcCCCEEEEEECCCCccccccC
Confidence            7776664  67899999999999999999999999998888887643   4678999999999999999753        


Q ss_pred             -CceeeeecccccceeEEEEc
Q psy17243        227 -GGEEHFLAGHLGCVTCVKLA  246 (392)
Q Consensus       227 -~~~~~~~~~~~~~v~~~~~~  246 (392)
                       ...+..+.+|.+.|++++|+
T Consensus       256 ~~~~~~~~~~H~~~V~~v~~d  276 (293)
T d1p22a2         256 GTLCLRTLVEHSGRVFRLQFD  276 (293)
T ss_dssp             TTTEEEEECCCSSCCCCEEEC
T ss_pred             CceeeEEecCCCCCEEEEEEc
Confidence             23566778888888888874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=9.8e-31  Score=227.17  Aligned_cols=314  Identities=13%  Similarity=0.037  Sum_probs=218.8

Q ss_pred             eEEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCC--eEEEEEcCCceeee--
Q psy17243         30 SCVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG--VIAVWVADNAQLLY--  104 (392)
Q Consensus        30 ~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~--  104 (392)
                      ..-.||| ||+++|+++ +|.|++||++.+..++.  .|...|.+++|+|||+.|++++.+.  .|++||.++++...  
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~   82 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE   82 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee
Confidence            4578999 999999886 57999999988877653  5899999999999999998776553  79999999887654  


Q ss_pred             ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee----------CCC
Q psy17243        105 SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS----------RDM  174 (392)
Q Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg  174 (392)
                      .+...+.+++|+|++++|++++.++.+++|++...   ........+...+.+++|+|++++|+.+.          .++
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  159 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  159 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             CCCceEEeeeecccccccceecccccccccccccc---ceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence            44567889999999999999999999999999743   33344556778889999999999998653          345


Q ss_pred             cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce-------eeeecccccceeEEEEcC
Q psy17243        175 SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE-------EHFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       175 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~  247 (392)
                      .+++||+.+++.... ..+...+..++|+ ++++.|++++.++.+++|+......       ...+..+...+..+.|++
T Consensus       160 ~~~v~d~~~~~~~~~-~~~~~~~~~~~~s-pdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  237 (360)
T d1k32a3         160 AIHVYDMEGRKIFAA-TTENSHDYAPAFD-ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP  237 (360)
T ss_dssp             EEEEEETTTTEEEEC-SCSSSBEEEEEEC-TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCC
T ss_pred             ceeeeccccCceeee-ccccccccccccc-CCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECC
Confidence            799999998876544 4567788899999 6788999999999999999765432       222333444455556666


Q ss_pred             CCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceecc---
Q psy17243        248 DGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDN---  324 (392)
Q Consensus       248 dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~---  324 (392)
                      ++..+........     ....++..-......+  .....+.................++++++.++.+++|....   
T Consensus       238 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  310 (360)
T d1k32a3         238 RSMTSEAGEYDLN-----DMYKRSSPINVDPGDY--RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV  310 (360)
T ss_dssp             GGGSCCCCCCCCT-----TGGGGCEECSCCCBCE--EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE
T ss_pred             CcCcccccceeec-----ccccceeecccCcCce--eEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE
Confidence            6665544321110     0000010000000000  00001111222233333344455667777778888876432   


Q ss_pred             ------CCCCCCChhhhhhhcccChHHHHHHhhCCCCCCcc
Q psy17243        325 ------VGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSR  359 (392)
Q Consensus       325 ------~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~  359 (392)
                            ....+|||||++|+ +++.||.|++||+.+++.+.
T Consensus       311 ~~~~~~v~~~~~SpDG~~l~-~~~~Dg~i~v~d~~~~~~~~  350 (360)
T d1k32a3         311 TEVKNNLTDLRLSADRKTVM-VRKDDGKIYTFPLEKPEDER  350 (360)
T ss_dssp             EEEEEEEEEEEECTTSCEEE-EEETTSCEEEEESSCTTSCE
T ss_pred             EEecCCcCEEEECCCCCEEE-EEECCCeEEEEECCCCCcce
Confidence                  12229999999998 88999999999999887743

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.4e-28  Score=208.76  Aligned_cols=256  Identities=10%  Similarity=0.068  Sum_probs=194.9

Q ss_pred             CCccCCeEEEEECCCccceeee---ccCCcCeeEEEecCC-CCeEEEEeCCCeEEEEeCCCCceeEEecccccc-eEEEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTM---EGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQST-ILAVA   75 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~   75 (392)
                      ||+.||+|+|||+.++.....+   .+|..+|.+++|+|+ +.+|++|+.||.|++|++...........+... .....
T Consensus        28 s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~  107 (342)
T d1yfqa_          28 ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRI  107 (342)
T ss_dssp             EEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEE
T ss_pred             EEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccc
Confidence            5789999999999766543332   369999999999986 558999999999999999988777766654443 45556


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCceeeee----c-----ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcce
Q psy17243         76 VLSDSRRVVTSDKAGVIAVWVADNAQLLYS----A-----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER  146 (392)
Q Consensus        76 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~-----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  146 (392)
                      +.++...+++++.++.+++||++.......    .     ........+.+.+..+++++.|+.|++||+..........
T Consensus       108 ~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  187 (342)
T d1yfqa_         108 CKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI  187 (342)
T ss_dssp             EEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEE
T ss_pred             cccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceee
Confidence            677888999999999999999875533211    1     1234567788899999999999999999998766555555


Q ss_pred             eeeccccceEEEEEEc-CCCEEEEeeCCCcEEEEEcCCCeEE------EE---------EecCCCceeEEEEecCCCcEE
Q psy17243        147 FTVSHSEEITCFTVTW-DSQYLITGSRDMSLKVWQVVGGKLA------QV---------LVGHTDHVSCVAVAVTNKSLV  210 (392)
Q Consensus       147 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~------~~---------~~~~~~~v~~~~~~~~~~~~l  210 (392)
                      ........+.+..+.+ ++..+++++.||.+.+|+.......      ..         ...|...+++++|+ +++.+|
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l  266 (342)
T d1yfqa_         188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS-PRHKFL  266 (342)
T ss_dssp             EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC-TTTCCE
T ss_pred             eecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEec-CCccEE
Confidence            5445555666665554 5789999999999999998643211      11         13466688999999 677889


Q ss_pred             EEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCC
Q psy17243        211 VSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPP  258 (392)
Q Consensus       211 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~  258 (392)
                      ++|+.||.|++||+++++.+..+..+ ..+..++|+|+|.+++.+..+
T Consensus       267 asg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         267 YTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             EEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcC
Confidence            99999999999999999999887643 345567788888888876533

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=9.1e-29  Score=219.43  Aligned_cols=318  Identities=10%  Similarity=0.016  Sum_probs=222.4

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCce--eEEe---cccccceEEEEE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV--VSTF---KSHQSTILAVAV   76 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~---~~~~~~v~~~~~   76 (392)
                      .+.||.|.|||..+++.+..+..|. .+..++|+|||++|++++.|+.|++||+.+++.  ..++   ..|.+.+.+..|
T Consensus        38 ~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (432)
T d1qksa2          38 LRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME  116 (432)
T ss_dssp             ETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred             EcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence            4679999999999999999998774 699999999999999999999999999988763  3333   346666777788


Q ss_pred             ecCCCEE-EEEeCCCeEEEEEcCCceeeeeccc--------------ceeEEEEeCCCCEEE-EecCCCcEEEEeCCCCC
Q psy17243         77 LSDSRRV-VTSDKAGVIAVWVADNAQLLYSALG--------------PSKCLTVTHNMKYIV-SGDGDNSLRIWPTSPQT  140 (392)
Q Consensus        77 ~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~  140 (392)
                      +|||++| +++..++.+++||..+++.+.....              ....+.++|++..++ +...++.|.+||....+
T Consensus       117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~  196 (432)
T d1qksa2         117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN  196 (432)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred             CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC
Confidence            8999986 6778899999999999987654432              234678899888764 45668999999986433


Q ss_pred             CCCcceeeeccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcCCCeEEEEEec-----CCCceeEEEEecCCCcEEEEec
Q psy17243        141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVGGKLAQVLVG-----HTDHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~  214 (392)
                      ....  ....+...+..++|+|+++++++++. ++.+.++|..+++.+..+..     |........+. ..+....+..
T Consensus       197 ~~~~--~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~~~~~~~  273 (432)
T d1qksa2         197 NLKT--TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP-TFGPVWATSH  273 (432)
T ss_dssp             EEEE--EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET-TTEEEEEEEB
T ss_pred             cceE--EEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecC-CCCceecccc
Confidence            2222  22345667889999999998777765 56899999999888777643     22333333333 4444444443


Q ss_pred             -CCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCccee
Q psy17243        215 -KDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSS  293 (392)
Q Consensus       215 -~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (392)
                       .++.+.+|+.....    ...|...+....+++++..++....+..                   .+.|......    
T Consensus       274 lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~-------------------~~lw~~~~~~----  326 (432)
T d1qksa2         274 MGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNS-------------------QYLYVDATLN----  326 (432)
T ss_dssp             SSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTC-------------------SEEEEECTTC----
T ss_pred             cCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCc-------------------cceeecccCC----
Confidence             47889999876543    3456678888899998876666542211                   1112111000    


Q ss_pred             EEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccc
Q psy17243        294 IMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSS  373 (392)
Q Consensus       294 ~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~  373 (392)
                                                ++...... ...||++.|+ +++.|+.+++||+.+....      ..+..++..
T Consensus       327 --------------------------~~~~~~~s-v~vpDg~~la-~~s~d~~~k~w~~~~~~~l------~~~~~~v~~  372 (432)
T d1qksa2         327 --------------------------PEAEISGS-VAVFDIKAMT-GDGSDPEFKTLPIAEWAGI------TEGQPRVVQ  372 (432)
T ss_dssp             --------------------------SSHHHHTC-EEEEEGGGCC-CSSSCCCEEEECHHHHHTC------CSSCCEEEE
T ss_pred             --------------------------CCCCeeeE-EEEEechhhc-ccccCCceEeccccccccc------CCCCCcEEE
Confidence                                      00000111 1239999999 9999999999998554221      123445667


Q ss_pred             cccccCccCCC
Q psy17243        374 RQHSVDTDELS  384 (392)
Q Consensus       374 ~~fspdg~~l~  384 (392)
                      ++|||||++|+
T Consensus       373 ~~fS~DG~~v~  383 (432)
T d1qksa2         373 GEFNKDGTEVW  383 (432)
T ss_dssp             EEECTTSSEEE
T ss_pred             eEECCCCCEEE
Confidence            99999999885

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=1.9e-28  Score=217.67  Aligned_cols=345  Identities=8%  Similarity=-0.027  Sum_probs=225.8

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEE--e---cccccceEEEEE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST--F---KSHQSTILAVAV   76 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~---~~~~~~v~~~~~   76 (392)
                      ++.||.|+|||+.+++.+.++..|. .+..++|+|||++|++++.|++|++||+.+++....  +   .+|...+.+++|
T Consensus        38 ~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (426)
T d1hzua2          38 LRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK  116 (426)
T ss_dssp             ETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST
T ss_pred             EcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeee
Confidence            5679999999999999999999774 589999999999999999999999999998875432  2   356667778888


Q ss_pred             ecCCCEEEEE-eCCCeEEEEEcCCceeeeeccc--------------ceeEEEEeCCCCEEEEecC-CCcEEEEeCCCCC
Q psy17243         77 LSDSRRVVTS-DKAGVIAVWVADNAQLLYSALG--------------PSKCLTVTHNMKYIVSGDG-DNSLRIWPTSPQT  140 (392)
Q Consensus        77 ~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~  140 (392)
                      +|||++++++ ..++.+.+||..+++.+.....              ....+..++++..++.... .+.+.+++.....
T Consensus       117 spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~  196 (426)
T d1hzua2         117 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  196 (426)
T ss_dssp             TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS
T ss_pred             cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc
Confidence            9999987555 5789999999999877654432              2234555666666555443 3455555554322


Q ss_pred             CCCcceeeeccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcCCCeEEEEEecCC--CceeEEEEecCCCcE--EEEecC
Q psy17243        141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVGGKLAQVLVGHT--DHVSCVAVAVTNKSL--VVSGSK  215 (392)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~--l~~~~~  215 (392)
                        ........+...+..+.|+|++++++++.. +..+.+++..+++.+.......  .......+..+....  .++.+.
T Consensus       197 --~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (426)
T d1hzua2         197 --NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG  274 (426)
T ss_dssp             --SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTT
T ss_pred             --ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCC
Confidence              122233467788899999999998877764 5679999999999887765322  223344444333333  334456


Q ss_pred             CCeEEEEECCC-------CceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccC
Q psy17243        216 DSNLIVWDMET-------GGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYG  288 (392)
Q Consensus       216 dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (392)
                      |+.+.+|+...       ++....+.+|...+..++|+|||++++.+.....       .     .........|....+
T Consensus       275 d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~-------s-----~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         275 DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP-------D-----ARISQSVAVFDLKNL  342 (426)
T ss_dssp             TCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCS-------S-----HHHHTCEEEEETTCT
T ss_pred             CceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCC-------C-----cccCCEEEEEECCCC
Confidence            88999988754       3677889999999999999999999997532100       0     000111223433322


Q ss_pred             CcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhhhcc----cChHHHHHHhhCCCCCCccccccc
Q psy17243        289 HLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQS----QHFDQLEALWNKKSPPRSRRFEHS  364 (392)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s----~~~d~~i~~Wd~~~~~~~~~~~~~  364 (392)
                      ........  ..+.       .+..++..+++      +++|||||++++++    ++.|+.|+|||..+.+....    
T Consensus       343 ~~~~~~~~--~~~~-------~~~~~~~~rv~------~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~----  403 (426)
T d1hzua2         343 DAKYQVLP--IAEW-------ADLGEGAKRVV------QPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV----  403 (426)
T ss_dssp             TSCCEEEC--HHHH-------HCCCSSCCCEE------EEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEE----
T ss_pred             CcCeEEec--cchh-------cccCCCCccEE------EEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEE----
Confidence            21111000  0000       00001111111      23699999987544    35678899999988765222    


Q ss_pred             cccccCccccccccCccCCCC
Q psy17243        365 MSKQNSYSSRQHSVDTDELSS  385 (392)
Q Consensus       365 ~~~~~~~~~~~fspdg~~l~~  385 (392)
                      +...     ..++|+|+|-|.
T Consensus       404 i~~~-----~~~tp~Gk~~~~  419 (426)
T d1hzua2         404 VKDP-----RLITPTGKFNVY  419 (426)
T ss_dssp             ECCT-----TCCSEEEEEEHH
T ss_pred             ECCC-----CccCCCceEeEe
Confidence            2111     256899998663

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.4e-26  Score=199.24  Aligned_cols=243  Identities=10%  Similarity=0.026  Sum_probs=178.5

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCC--eEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDN--TAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      +.+|.|++||+++++.++ + +|...|.+++|+|||++|++++.+.  .|++||.++++.. .+..|...|.+++|+|++
T Consensus        21 ~~~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg   97 (360)
T d1k32a3          21 VSRGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNG   97 (360)
T ss_dssp             EETTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTS
T ss_pred             EECCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccc
Confidence            356899999998877665 3 5999999999999999998776553  7999999887655 566799999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeee---cccceeEEEEeCCCCEEEEec----------CCCcEEEEeCCCCCCCCccee
Q psy17243         81 RRVVTSDKAGVIAVWVADNAQLLYS---ALGPSKCLTVTHNMKYIVSGD----------GDNSLRIWPTSPQTHKDDERF  147 (392)
Q Consensus        81 ~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~  147 (392)
                      ++|++++.++.+++|++.+++....   ....+.+++|+|++++|+.+.          .++.+++||+....    ...
T Consensus        98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~----~~~  173 (360)
T d1k32a3          98 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFA  173 (360)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEE
T ss_pred             cccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc----eee
Confidence            9999999999999999999876544   344677899999999998653          34568999996432    223


Q ss_pred             eeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE-------EEEEecCCC-------------------------
Q psy17243        148 TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL-------AQVLVGHTD-------------------------  195 (392)
Q Consensus       148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~-------------------------  195 (392)
                      ...+...+..++|+|++++|++++.++.+.+||......       ...+..|..                         
T Consensus       174 ~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  253 (360)
T d1k32a3         174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY  253 (360)
T ss_dssp             CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred             ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccc
Confidence            335667788999999999999999999999998754321       111211111                         


Q ss_pred             -----------ceeEEEEecCC-------------CcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeE
Q psy17243        196 -----------HVSCVAVAVTN-------------KSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTV  251 (392)
Q Consensus       196 -----------~v~~~~~~~~~-------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~  251 (392)
                                 ....+... ++             ..++++++.++.|++||+.+++..    .|.+.|.+++|+|||+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~  328 (360)
T d1k32a3         254 KRSSPINVDPGDYRMIIPL-ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKT  328 (360)
T ss_dssp             GGCEECSCCCBCEEEEEEC-SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCE
T ss_pred             cceeecccCcCceeEeeec-CCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCE
Confidence                       11122222 11             112344556778888888776542    34456888888888888


Q ss_pred             EEEcCC
Q psy17243        252 AMSDLP  257 (392)
Q Consensus       252 ~~~~~~  257 (392)
                      ++++..
T Consensus       329 l~~~~~  334 (360)
T d1k32a3         329 VMVRKD  334 (360)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            877543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=3.3e-25  Score=196.65  Aligned_cols=304  Identities=9%  Similarity=0.054  Sum_probs=197.4

Q ss_pred             ecCCC--CeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee--cc--
Q psy17243         34 ISPNS--IFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS--AL--  107 (392)
Q Consensus        34 ~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~--  107 (392)
                      ++.+.  -++++.+.||+|+|||+.+++.+.++..|. .+..++|+|||+++++++.|+.+++||+.+++....  ..  
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            44443  356788899999999999999999999764 589999999999999999999999999998864322  11  


Q ss_pred             ----cceeEEEEeCCCCEEEEe-cCCCcEEEEeCCCCCCCCcce--------eeeccccceEEEEEEcCCCEEEEeeC-C
Q psy17243        108 ----GPSKCLTVTHNMKYIVSG-DGDNSLRIWPTSPQTHKDDER--------FTVSHSEEITCFTVTWDSQYLITGSR-D  173 (392)
Q Consensus       108 ----~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~-d  173 (392)
                          ..+.++.|+|+|++++++ ..++.+.+||...........        ....+......+.+++++..++.... .
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence                123456678899987655 478999999997543222111        11123344556667777776665443 4


Q ss_pred             CcEEEEEcCCCeEE-EEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc---------------cc
Q psy17243        174 MSLKVWQVVGGKLA-QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG---------------HL  237 (392)
Q Consensus       174 g~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------~~  237 (392)
                      +.+.+++..+...+ .....+...+..+.++|.+..++++...+..+.+++..+++.+.....               +.
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (426)
T d1hzua2         185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY  264 (426)
T ss_dssp             TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT
T ss_pred             CeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCC
Confidence            56666666555432 233457778899999966666666667788899999999887765432               22


Q ss_pred             cceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEeeccccce
Q psy17243        238 GCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEIS  317 (392)
Q Consensus       238 ~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~  317 (392)
                      ..+.....++++.+.+++.........                 .|..     .               ..+.+      
T Consensus       265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~-----------------~~~~-----~---------------~~l~g------  301 (426)
T d1hzua2         265 GPVWSTSHLGDGSISLIGTDPKNHPQY-----------------AWKK-----V---------------AELQG------  301 (426)
T ss_dssp             EEEEEEECTTTCEEEEEECCTTTCTTT-----------------BTSE-----E---------------EEEEC------
T ss_pred             CceEEeccCCCceEEEeeccccccccc-----------------cceE-----e---------------EEEec------
Confidence            334445555666666665432211000                 0000     0               00000      


Q ss_pred             ecceeccCCCCCCChhhhhhhc------ccChHHHHHHhhCCCCCCccccc------cccccccCccccccccCccCCC
Q psy17243        318 KIPIKDNVGSQGLGPEQAALAQ------SQHFDQLEALWNKKSPPRSRRFE------HSMSKQNSYSSRQHSVDTDELS  384 (392)
Q Consensus       318 ~~~~~~~~~~~~~s~dg~~la~------s~~~d~~i~~Wd~~~~~~~~~~~------~~~~~~~~~~~~~fspdg~~l~  384 (392)
                         +.......+|+|||++|++      +++.|++|+|||+.+++....+.      ....+..++..++|||||++|+
T Consensus       302 ---~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~  377 (426)
T d1hzua2         302 ---QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW  377 (426)
T ss_dssp             ---SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEE
T ss_pred             ---CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEE
Confidence               0111222379999999985      45678899999999887643321      1112344566789999999773

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=9.7e-23  Score=171.70  Aligned_cols=247  Identities=16%  Similarity=0.131  Sum_probs=190.6

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeE-EEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCC
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS   80 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~   80 (392)
                      ++.|++|.|||+++++.++++.. ...+..++|+|+|++| ++++.++.|++||+.+++.+..+..+. .+..+.|++++
T Consensus         8 ~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~   85 (301)
T d1l0qa2           8 NSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDG   85 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS
T ss_pred             ECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccc
Confidence            56789999999999999999874 4567899999999987 466788999999999999999988665 46889999999


Q ss_pred             CEEEE-EeCCCeEEEEEcCCceeeeecc--cceeEEEEeCCCCEEEE-ecCCCcEEEEeCCCCCCCCcceeeeccccceE
Q psy17243         81 RRVVT-SDKAGVIAVWVADNAQLLYSAL--GPSKCLTVTHNMKYIVS-GDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT  156 (392)
Q Consensus        81 ~~l~~-~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~  156 (392)
                      ..+++ +..++.+.+|+..+++......  ....++.++|++..++. +..++.+.+|+..+...   . ....+...+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~  161 (301)
T d1l0qa2          86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV---I-NTVSVGRSPK  161 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---E-EEEECCSSEE
T ss_pred             ccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccce---e-eecccCCCce
Confidence            86655 5567899999999998776544  45678999999988765 55578899999864322   2 2224456678


Q ss_pred             EEEEEcCCCEEEEeeCC-CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEe--cCCCeEEEEECCCCceeeee
Q psy17243        157 CFTVTWDSQYLITGSRD-MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSG--SKDSNLIVWDMETGGEEHFL  233 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~  233 (392)
                      .+.++|+++.++++..+ +.+.+|+....+....+.. ...+..+++++.+..+++++  ..++.|++||+.+++.+..+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             EEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEE
Confidence            89999999988877765 6677888777777666654 45667889995544444433  34578999999999988887


Q ss_pred             cccccceeEEEEcCCCeEE-EEcC
Q psy17243        234 AGHLGCVTCVKLAGDGTVA-MSDL  256 (392)
Q Consensus       234 ~~~~~~v~~~~~~~dg~~~-~~~~  256 (392)
                      ..+ ..+.+++|+|||+.+ +++.
T Consensus       241 ~~~-~~~~~va~spdg~~l~va~~  263 (301)
T d1l0qa2         241 PVG-PDPAGIAVTPDGKKVYVALS  263 (301)
T ss_dssp             ECC-SSEEEEEECTTSSEEEEEET
T ss_pred             cCC-CCEEEEEEeCCCCEEEEEEC
Confidence            643 467999999999976 4544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=5.6e-23  Score=175.96  Aligned_cols=230  Identities=12%  Similarity=0.040  Sum_probs=179.6

Q ss_pred             CCccCCeEEEEECCCccceeeecc--CCcCeeEEEecCCCCeE-EEEeCCCeEEEEeCCCCceeEEecccc-----cceE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEG--HLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLTLGSVVSTFKSHQ-----STIL   72 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~   72 (392)
                      |++.|++|+|||+++++.++.+..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+.     ..+.
T Consensus         6 t~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~   85 (337)
T d1pbyb_           6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF   85 (337)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred             EEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccccee
Confidence            478899999999999999998865  34567899999999987 466789999999999999998887553     3355


Q ss_pred             EEEEecCCCEEEEEe------------CCCeEEEEEcCCceeeeecc--cceeEEEEeCCCCEEEEecCCCcEEEEeCCC
Q psy17243         73 AVAVLSDSRRVVTSD------------KAGVIAVWVADNAQLLYSAL--GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSP  138 (392)
Q Consensus        73 ~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~  138 (392)
                      .++|+|++++++++.            .+..+.+||..+++.+....  ..+..++++|+++++++++.+  +.+||...
T Consensus        86 ~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~  163 (337)
T d1pbyb_          86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEA  163 (337)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTT
T ss_pred             eEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeec
Confidence            789999999998776            46788999999998876544  356789999999999998754  56677643


Q ss_pred             CCCCC---------------------------------------------------------------cceeeeccccce
Q psy17243        139 QTHKD---------------------------------------------------------------DERFTVSHSEEI  155 (392)
Q Consensus       139 ~~~~~---------------------------------------------------------------~~~~~~~~~~~v  155 (392)
                      .....                                                               .......+...+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (337)
T d1pbyb_         164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY  243 (337)
T ss_dssp             TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             CcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcce
Confidence            21000                                                               000011233445


Q ss_pred             EEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      ..+.+++++.+++.+  ++.|++||+.+++.+..+. +...+.+++|+ +++.+|++++.|+.|++||..+++.+.+++.
T Consensus       244 ~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s-~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         244 FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVS-TDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEEC-TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            566777788777765  5789999999999998876 56778999999 7788888999999999999999999988764


Q ss_pred             c
Q psy17243        236 H  236 (392)
Q Consensus       236 ~  236 (392)
                      .
T Consensus       320 ~  320 (337)
T d1pbyb_         320 P  320 (337)
T ss_dssp             G
T ss_pred             C
Confidence            3

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1.1e-22  Score=171.37  Aligned_cols=268  Identities=13%  Similarity=0.128  Sum_probs=189.9

Q ss_pred             EEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEE-EEeCCCeEEEEEcCCceeeeeccc--ceeEEEEeCC
Q psy17243         42 VSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVV-TSDKAGVIAVWVADNAQLLYSALG--PSKCLTVTHN  118 (392)
Q Consensus        42 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~  118 (392)
                      ++.+.|++|.+||+++++.++++.. ...+..++|+|+|++|+ +++.++.|++||+.+++.+..+..  ....+.++++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~   84 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPD   84 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccc
Confidence            4567899999999999999999884 45578999999999875 566789999999999988776543  4578899999


Q ss_pred             CCEEEE-ecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEE-eeCCCcEEEEEcCCCeEEEEEecCCCc
Q psy17243        119 MKYIVS-GDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLIT-GSRDMSLKVWQVVGGKLAQVLVGHTDH  196 (392)
Q Consensus       119 ~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~  196 (392)
                      +..+++ +..++.+.+|+.....    ......+.....++.++|+++.++. +..++.+.+|+..+.+....+.. ...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  159 (301)
T d1l0qa2          85 GKQVYVTNMASSTLSVIDTTSNT----VAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRS  159 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTE----EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSS
T ss_pred             cccccccccccceeeecccccce----eeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCC
Confidence            986655 5567889999986432    2222345567788999999987754 55678899999999998888774 456


Q ss_pred             eeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCcccccccccc
Q psy17243        197 VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEV  276 (392)
Q Consensus       197 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (392)
                      +..++++|....++++...++.+.+|+....+....+.. ......+++++++..++....+..                
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~----------------  222 (301)
T d1l0qa2         160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKY----------------  222 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSS----------------
T ss_pred             ceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccce----------------
Confidence            788999965555555555668888999887776666553 455778999999998765421100                


Q ss_pred             ccceeEEEeccCCcceeEEEeecccccceeEEEeeccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCC
Q psy17243        277 SLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPP  356 (392)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~  356 (392)
                      ....+.|....+...                 ..        +.........+|+|||++|.++++.|+.|++||+.+++
T Consensus       223 ~~~v~v~D~~t~~~~-----------------~~--------~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         223 FNTVSMIDTGTNKIT-----------------AR--------IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             CCEEEEEETTTTEEE-----------------EE--------EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             eeeeeeeecCCCeEE-----------------EE--------EcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            001112222111100                 00        00000011236999999887688899999999998886


Q ss_pred             C
Q psy17243        357 R  357 (392)
Q Consensus       357 ~  357 (392)
                      .
T Consensus       278 ~  278 (301)
T d1l0qa2         278 I  278 (301)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.2e-22  Score=179.71  Aligned_cols=218  Identities=8%  Similarity=-0.004  Sum_probs=155.0

Q ss_pred             cCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceee--eecc-----
Q psy17243         35 SPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL--YSAL-----  107 (392)
Q Consensus        35 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~-----  107 (392)
                      +++.-++++.+.+|+|.|||.++++.+..+..+ ..+..++|+|||+++++++.|+.+++||+.+++..  .++.     
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence            333335689999999999999999999999876 46899999999999999999999999999887532  2221     


Q ss_pred             -cceeEEEEeCCCCEE-EEecCCCcEEEEeCCCCCCCCccee--------eeccccceEEEEEEcCCCEEE-EeeCCCcE
Q psy17243        108 -GPSKCLTVTHNMKYI-VSGDGDNSLRIWPTSPQTHKDDERF--------TVSHSEEITCFTVTWDSQYLI-TGSRDMSL  176 (392)
Q Consensus       108 -~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i  176 (392)
                       +.+....|+|||++| +++..++.|++||..+.+.......        ...+......+.++|++..++ +...++.|
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence             122344567899986 6677899999999986543322111        123455677888999988764 55668999


Q ss_pred             EEEEcCCCeEEEEEe-cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc-----cccceeEEEEcCCCe
Q psy17243        177 KVWQVVGGKLAQVLV-GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG-----HLGCVTCVKLAGDGT  250 (392)
Q Consensus       177 ~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~dg~  250 (392)
                      .+||..+.+...... .+...+..++|+|.+..+++++..++.+.++|..+++.+..+..     |........+...+.
T Consensus       188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~  267 (432)
T d1qksa2         188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP  267 (432)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred             EEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCc
Confidence            999998876554332 34567889999955444555566677899999998887765532     233334444444444


Q ss_pred             EEE
Q psy17243        251 VAM  253 (392)
Q Consensus       251 ~~~  253 (392)
                      ...
T Consensus       268 ~~~  270 (432)
T d1qksa2         268 VWA  270 (432)
T ss_dssp             EEE
T ss_pred             eec
Confidence            433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=4.2e-22  Score=170.47  Aligned_cols=287  Identities=12%  Similarity=0.023  Sum_probs=192.4

Q ss_pred             CeEEEEeCCCeEEEEeCCCCceeEEeccc--ccceEEEEEecCCCEEE-EEeCCCeEEEEEcCCceeeeeccc-------
Q psy17243         39 IFAVSGSEDNTAKVWGLTLGSVVSTFKSH--QSTILAVAVLSDSRRVV-TSDKAGVIAVWVADNAQLLYSALG-------  108 (392)
Q Consensus        39 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~-------  108 (392)
                      .|+++++.|++|+|||+++++.+.++..+  ...+.+++|+|||++++ +++.++.|.+||+.+++.+.....       
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            48999999999999999999999988653  35578999999999875 567889999999999988765543       


Q ss_pred             -ceeEEEEeCCCCEEEEecC------------CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCc
Q psy17243        109 -PSKCLTVTHNMKYIVSGDG------------DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS  175 (392)
Q Consensus       109 -~~~~~~~~~~~~~l~~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (392)
                       ....++++|++++++++..            +..+.+||..+...    .........+..++|+|+++++++++.+  
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~~~~~~~~s~dg~~l~~~~~~--  155 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR----RKAFEAPRQITMLAWARDGSKLYGLGRD--  155 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE----EEEEECCSSCCCEEECTTSSCEEEESSS--
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE----EEeccccCCceEEEEcCCCCEEEEEcCC--
Confidence             2347899999999988763            56788888864322    2222345667889999999999998654  


Q ss_pred             EEEEEcCCCeEEEEEecCCCceeEEEEec-----------------------CCCcEEEEecCCCeEEEEECCCCceee-
Q psy17243        176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAV-----------------------TNKSLVVSGSKDSNLIVWDMETGGEEH-  231 (392)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-----------------------~~~~~l~~~~~dg~i~iwd~~~~~~~~-  231 (392)
                      +.+||..+++....+..+.... ...+.|                       ........+..++.+.+|+..+++... 
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             cceeeeecCcEEEEeecCCccc-cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence            7889999998887775432211 111111                       011111223345568999998887654 


Q ss_pred             eecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccccceeEEEee
Q psy17243        232 FLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSA  311 (392)
Q Consensus       232 ~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  311 (392)
                      .+..+...+..+.+++++.+++....                     ....|....+....                 . 
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~i~v~d~~~~~~~~-----------------~-  275 (337)
T d1pbyb_         235 EVRIMDVFYFSTAVNPAKTRAFGAYN---------------------VLESFDLEKNASIK-----------------R-  275 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEES---------------------EEEEEETTTTEEEE-----------------E-
T ss_pred             EecCCCcceEEEEecccceEEEEccc---------------------cEEEEECCCCcEEE-----------------E-
Confidence            34556677888899999888776420                     01122222111000                 0 


Q ss_pred             ccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccccccccccccCccc-cccccC
Q psy17243        312 SMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRRFEHSMSKQNSYSS-RQHSVD  379 (392)
Q Consensus       312 s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~-~~fspd  379 (392)
                             +.........+|+|||++|+ +++.|+.|++||+.+.+....+..+-.....+.+ .-|++|
T Consensus       276 -------~~~~~~~~~~~~s~dG~~l~-v~~~~~~i~v~D~~t~~~v~~i~~~g~~~~~~~~~~~~~~~  336 (337)
T d1pbyb_         276 -------VPLPHSYYSVNVSTDGSTVW-LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD  336 (337)
T ss_dssp             -------EECSSCCCEEEECTTSCEEE-EESBSSEEEEEETTTCCEEEEEECGGGCCCBTCCCEEEECC
T ss_pred             -------EcCCCCEEEEEECCCCCEEE-EEeCCCcEEEEECCCCcEEEEEECCCCCccceeeeeEEcCC
Confidence                   00111122237999999998 7789999999999988775443333333333443 567776

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=3.3e-22  Score=171.78  Aligned_cols=278  Identities=11%  Similarity=0.017  Sum_probs=185.2

Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc-cccceEEEEEecCCCEEEE-EeCCCeEEEEEcCCceeeeeccc-
Q psy17243         32 VAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS-HQSTILAVAVLSDSRRVVT-SDKAGVIAVWVADNAQLLYSALG-  108 (392)
Q Consensus        32 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~-  108 (392)
                      ++|++++++|++++.+++|.+||+++++.+.+++. +...+.+++|+|||+++++ +..++.|++||+.+++.+..... 
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            47899999999999999999999999999998873 5566889999999998754 55789999999999988765432 


Q ss_pred             --------ceeEEEEeCCCCEEEEec------------CCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEE
Q psy17243        109 --------PSKCLTVTHNMKYIVSGD------------GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI  168 (392)
Q Consensus       109 --------~~~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (392)
                              ....++++|++++++++.            .+..+.+|+..+.......... .....+..+.+++++.+++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSCEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee-eccCceEEEEecCCCEEEE
Confidence                    245789999999998775            4677888988755444333322 2334555666777776665


Q ss_pred             EeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEec-------------------------CCCcEEEEecCCCeEEEEE
Q psy17243        169 TGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAV-------------------------TNKSLVVSGSKDSNLIVWD  223 (392)
Q Consensus       169 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-------------------------~~~~~l~~~~~dg~i~iwd  223 (392)
                      ++   +.+.+|++.+++.+..+..+.. ...+.++|                         .....+.++..++.+.+||
T Consensus       161 ~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
T d1jmxb_         161 AG---PDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  236 (346)
T ss_dssp             ES---SSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             eC---CcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence            43   4689999999988887764322 22222332                         1222333444556788888


Q ss_pred             CCCCceee-eecccccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeecccc
Q psy17243        224 METGGEEH-FLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDER  302 (392)
Q Consensus       224 ~~~~~~~~-~~~~~~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (392)
                      +.++.... ....+...+..+.+++++..++.....                    ....|....+.             
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~v~v~d~~~~~-------------  283 (346)
T d1jmxb_         237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN--------------------RLAKYDLKQRK-------------  283 (346)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEES--------------------EEEEEETTTTE-------------
T ss_pred             CCCCceEEEEeecccceeEEEEEeCCCCEEEEecCC--------------------eEEEEECCCCc-------------
Confidence            88877554 344567778888888877766653210                    01112211110             


Q ss_pred             cceeEEEeeccccceecceeccCCCCCCChhhhhhhcccChHHHHHHhhCCCCCCccc
Q psy17243        303 LKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEALWNKKSPPRSRR  360 (392)
Q Consensus       303 ~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~la~s~~~d~~i~~Wd~~~~~~~~~  360 (392)
                          .+..        +.........+|||||++|+ +++.|+.|++||+.+.+....
T Consensus       284 ----~~~~--------~~~~~~~~~va~s~DG~~l~-v~~~d~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         284 ----LIKA--------ANLDHTYYCVAFDKKGDKLY-LGGTFNDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             ----EEEE--------EECSSCCCEEEECSSSSCEE-EESBSSEEEEEETTTTEEEEE
T ss_pred             ----EEEE--------EcCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECccCCEEEE
Confidence                0000        00001122337999999999 778899999999998876443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=3.7e-20  Score=158.78  Aligned_cols=232  Identities=12%  Similarity=0.039  Sum_probs=166.1

Q ss_pred             CCccCCeEEEEECCCccceeeec-cCCcCeeEEEecCCCCeE-EEEeCCCeEEEEeCCCCceeEEecccc------cceE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTME-GHLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLTLGSVVSTFKSHQ------STIL   72 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~v~   72 (392)
                      +++.++.|.|||+++++++++++ .|...+.+++|+|||+++ +++..++.|++||+.+++.+..+....      ..+.
T Consensus        13 ~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~   92 (346)
T d1jmxb_          13 VTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY   92 (346)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS
T ss_pred             EEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceE
Confidence            46789999999999999999887 466778999999999987 456678999999999999887775322      2356


Q ss_pred             EEEEecCCCEEEEEe------------CCCeEEEEEcCCceeeeecc-----cceeEEEEeCCCCEEEEecCCCcEEEEe
Q psy17243         73 AVAVLSDSRRVVTSD------------KAGVIAVWVADNAQLLYSAL-----GPSKCLTVTHNMKYIVSGDGDNSLRIWP  135 (392)
Q Consensus        73 ~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~~~d  135 (392)
                      .++|+|||+++++++            .++.+.+|+..+++......     .....+.+++++..++.+   +.+.+|+
T Consensus        93 ~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  169 (346)
T d1jmxb_          93 SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMD  169 (346)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEEC
T ss_pred             EEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEE
Confidence            789999999988765            46788999888765543221     122334444444443332   2244444


Q ss_pred             CCCCC-----------------------------------------------------------------CCCcceeeec
Q psy17243        136 TSPQT-----------------------------------------------------------------HKDDERFTVS  150 (392)
Q Consensus       136 ~~~~~-----------------------------------------------------------------~~~~~~~~~~  150 (392)
                      ..+..                                                                 ..........
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (346)
T d1jmxb_         170 VKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD  249 (346)
T ss_dssp             TTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeec
Confidence            32210                                                                 0000111223


Q ss_pred             cccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      +...+..+.+++++.+++... ++.|.+||..+++.+..+. +...+.+++|+ +++.+|++++.|+.|++||+++++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s-~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         250 LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFD-KKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEEC-SSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             ccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECccCCEE
Confidence            455666777777777776665 4579999999999888876 45679999999 67888888999999999999999999


Q ss_pred             eeeccccc
Q psy17243        231 HFLAGHLG  238 (392)
Q Consensus       231 ~~~~~~~~  238 (392)
                      ..+..+.+
T Consensus       327 ~~i~~p~g  334 (346)
T d1jmxb_         327 KNIKLPGG  334 (346)
T ss_dssp             EEEECSSS
T ss_pred             EEEECCCC
Confidence            88875443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=2.7e-19  Score=154.12  Aligned_cols=244  Identities=10%  Similarity=0.020  Sum_probs=173.9

Q ss_pred             ccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEe----------CCCeEEEEeCCCCceeEEeccccc---
Q psy17243          3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS----------EDNTAKVWGLTLGSVVSTFKSHQS---   69 (392)
Q Consensus         3 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~---   69 (392)
                      ..++.|.+||..+++++.++..+..+  .++|+|||++|++++          .|+.|.+||..+++.+..+..+..   
T Consensus        25 ~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~  102 (355)
T d2bbkh_          25 AAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF  102 (355)
T ss_dssp             CSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred             CCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee
Confidence            34668999999999999988765544  799999999887653          478999999999998887754332   


Q ss_pred             ----ceEEEEEecCCCEEEEEe--CCCeEEEEEcCCceeeeecccc----------------------------------
Q psy17243         70 ----TILAVAVLSDSRRVVTSD--KAGVIAVWVADNAQLLYSALGP----------------------------------  109 (392)
Q Consensus        70 ----~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~----------------------------------  109 (392)
                          ....++|+|+++.++++.  .+..+.+|+..+++.+.....+                                  
T Consensus       103 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~  182 (355)
T d2bbkh_         103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE  182 (355)
T ss_dssp             CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEE
Confidence                234678999999888775  4568999999888665432210                                  


Q ss_pred             --------------eeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeee---------ccccceEEEEEEcCCCE
Q psy17243        110 --------------SKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV---------SHSEEITCFTVTWDSQY  166 (392)
Q Consensus       110 --------------~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~  166 (392)
                                    +....+.+++..++.++.++.+++|++.............         ........+++++++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~  262 (355)
T d2bbkh_         183 ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR  262 (355)
T ss_dssp             EEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred             EEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence                          0122344455667777888999999987543221111100         01122345789999988


Q ss_pred             EEEeeCC----------CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCc-EEEEecCCCeEEEEECCCCceeeeecc
Q psy17243        167 LITGSRD----------MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKS-LVVSGSKDSNLIVWDMETGGEEHFLAG  235 (392)
Q Consensus       167 l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~  235 (392)
                      ++....+          ..|.+||..+++.+..+. +...+.+++|+|++.. ++++++.|+.|++||+++++.+.++.+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence            8776543          369999999999888776 3456889999954443 567778899999999999999999987


Q ss_pred             cccceeEEEEcCCC
Q psy17243        236 HLGCVTCVKLAGDG  249 (392)
Q Consensus       236 ~~~~v~~~~~~~dg  249 (392)
                      +...-..+.+.++|
T Consensus       342 ~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         342 LGHGPQVITTADMG  355 (355)
T ss_dssp             CCSSCCEEECCCCC
T ss_pred             cCCCccEEEeCCCC
Confidence            76555555555443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=4.4e-19  Score=153.95  Aligned_cols=291  Identities=9%  Similarity=-0.004  Sum_probs=183.9

Q ss_pred             ccCCcCeeEEEecCCCCeEEEE-----eCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe----------
Q psy17243         23 EGHLNTVSCVAISPNSIFAVSG-----SEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD----------   87 (392)
Q Consensus        23 ~~h~~~v~~~~~~~~~~~l~~~-----~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------   87 (392)
                      ..+..++..++++|+++.++..     +..+.|.+||.++++.+.++..+..+  .++|+|||++|+++.          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            3578899999999999988764     23467999999999999998766543  799999999998875          


Q ss_pred             CCCeEEEEEcCCceeeeecccc----------eeEEEEeCCCCEEEEec--CCCcEEEEeCCCCCCCCcceeeeccccce
Q psy17243         88 KAGVIAVWVADNAQLLYSALGP----------SKCLTVTHNMKYIVSGD--GDNSLRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        88 ~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      .++.|.+||..+++.+.....+          ...+.++++++.+++..  .++.+.+|+......       ..+....
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~  167 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD-------DQLLSSP  167 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE-------EEEeccc
Confidence            4578999999999887655432          24577888888766554  456778887753211       1333456


Q ss_pred             EEEEEEcCCCEE-EEeeCCCcEEEEEcCCCeEEEEEecCCC------ceeEEEEecCCCcEEEEecCCCeEEEEECCCCc
Q psy17243        156 TCFTVTWDSQYL-ITGSRDMSLKVWQVVGGKLAQVLVGHTD------HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG  228 (392)
Q Consensus       156 ~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  228 (392)
                      .++.++|+++.+ ++.+.|+.+.+|+...++.......+..      ....+.+.  .+..++..+.++.+.+|+..++.
T Consensus       168 ~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         168 TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN--KSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC--CCceEEEecCCceEEEEEcCCCe
Confidence            788899998754 6778899999999998877665543221      12233343  34455566789999999998775


Q ss_pred             eee--eecccccc----------eeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEE
Q psy17243        229 EEH--FLAGHLGC----------VTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMM  296 (392)
Q Consensus       229 ~~~--~~~~~~~~----------v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (392)
                      ...  ....+...          ...+++++++..++........         +...........|....+..      
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------~~~~~~~~~v~~~d~~t~~~------  310 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA---------WKLHAAAKEVTSVTGLVGQT------  310 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCce---------EEeecCCCeEEEEECCCCcE------
Confidence            432  22222222          3345556666655543211110         00000000111111111100      


Q ss_pred             eecccccceeEEEeeccccceecceeccCCCCCCChhhhhh-hcccChHHHHHHhhCCCCCCc
Q psy17243        297 AAVDERLKRRFSVSASMEEISKIPIKDNVGSQGLGPEQAAL-AQSQHFDQLEALWNKKSPPRS  358 (392)
Q Consensus       297 ~~~~~~~~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~l-a~s~~~d~~i~~Wd~~~~~~~  358 (392)
                                         ...+.........+|||||+.+ .++++.|++|++||+.+++..
T Consensus       311 -------------------~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         311 -------------------SSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             -------------------EEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence                               0001111112223899999853 358899999999999998873

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.2e-18  Score=148.46  Aligned_cols=256  Identities=12%  Similarity=0.135  Sum_probs=176.5

Q ss_pred             CCccCCeEEEEECCCccceeee--ccCCcCeeEEEecCCCCeEEEE-eCCCeEEEEeCCCCceeEEec---ccccceEEE
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTM--EGHLNTVSCVAISPNSIFAVSG-SEDNTAKVWGLTLGSVVSTFK---SHQSTILAV   74 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~   74 (392)
                      +++.|++|++|++++...+..+  ..|.+.+..|+|+|||++|+++ ..|+.|++|++........+.   .+...+..+
T Consensus         9 ~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l   88 (333)
T d1ri6a_           9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHI   88 (333)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEE
T ss_pred             ECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEE
Confidence            3568999999999765433333  2588999999999999988655 458999999998765433322   234557789


Q ss_pred             EEecCCCEEEEEeC-CCeEEEEEcCCceeeee-----cccceeEEEEeCCCCEEEEecC-CCcEEEEeCCCCCCCCcce-
Q psy17243         75 AVLSDSRRVVTSDK-AGVIAVWVADNAQLLYS-----ALGPSKCLTVTHNMKYIVSGDG-DNSLRIWPTSPQTHKDDER-  146 (392)
Q Consensus        75 ~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~-  146 (392)
                      +|+|||++|++++. ++.+.+|+.........     ....+.++.++|+++++++++. +..|.+|+........... 
T Consensus        89 ~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  168 (333)
T d1ri6a_          89 STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP  168 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred             EEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeec
Confidence            99999999998875 67899998877654332     2235678899999998887765 5678999886443322111 


Q ss_pred             --eeeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCe----EEEEEe------cCCCceeEEEEecCCCcEEEEe
Q psy17243        147 --FTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGK----LAQVLV------GHTDHVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       147 --~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~------~~~~~v~~~~~~~~~~~~l~~~  213 (392)
                        ...........++|++++.+++... ..+...+++.....    ......      ........+++++++..+++++
T Consensus       169 ~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~  248 (333)
T d1ri6a_         169 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD  248 (333)
T ss_dssp             EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred             eeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeec
Confidence              1223445668899999988877655 45677888764432    222221      1223456778896656667777


Q ss_pred             cCCCeEEEEECCCCceeeeec---ccccceeEEEEcCCCeEEEEcC
Q psy17243        214 SKDSNLIVWDMETGGEEHFLA---GHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       214 ~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ..++.+.+|++........+.   .....+..++|+|||++++...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~  294 (333)
T d1ri6a_         249 RTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG  294 (333)
T ss_dssp             TTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred             ccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEE
Confidence            788999999987655443332   2335678899999999877653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.1e-19  Score=155.15  Aligned_cols=215  Identities=9%  Similarity=0.084  Sum_probs=146.8

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEe--cccccceEEEEEecCCCEEEEEe-CCCeEEEEEcCCceeee------ecccce
Q psy17243         40 FAVSGSEDNTAKVWGLTLGSVVSTF--KSHQSTILAVAVLSDSRRVVTSD-KAGVIAVWVADNAQLLY------SALGPS  110 (392)
Q Consensus        40 ~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~------~~~~~~  110 (392)
                      .+++++.|++|++|+++....+..+  ..|.+.+..++|+|||++|++++ .++.|++|++.......      ......
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4577789999999999765433322  24788999999999999996655 58999999997653221      122345


Q ss_pred             eEEEEeCCCCEEEEecC-CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcCCCeEEE
Q psy17243        111 KCLTVTHNMKYIVSGDG-DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVGGKLAQ  188 (392)
Q Consensus       111 ~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~  188 (392)
                      ..++++|++++|++++. ++.+.+|+......... .....+...+.++.++|+++++++++. +..|.+|+........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV-VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE-EEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceec-ccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            67999999999998875 67888988764322222 222345667888999999998887764 5679999987653222


Q ss_pred             E------EecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee----eeec------ccccceeEEEEcCCCeEE
Q psy17243        189 V------LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE----HFLA------GHLGCVTCVKLAGDGTVA  252 (392)
Q Consensus       189 ~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~------~~~~~v~~~~~~~dg~~~  252 (392)
                      .      ..........++|++.....+.+....+...+|+.......    ..+.      ........+++++|++++
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence            1      12234556789999655555566667788888887543211    1111      122356678899999877


Q ss_pred             EEc
Q psy17243        253 MSD  255 (392)
Q Consensus       253 ~~~  255 (392)
                      +..
T Consensus       245 ~~~  247 (333)
T d1ri6a_         245 YAC  247 (333)
T ss_dssp             EEE
T ss_pred             eee
Confidence            654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=2.4e-17  Score=142.84  Aligned_cols=241  Identities=7%  Similarity=-0.032  Sum_probs=167.5

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEe----------CCCeEEEEeCCCCceeEEecccccce--
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS----------EDNTAKVWGLTLGSVVSTFKSHQSTI--   71 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~v--   71 (392)
                      ..+.|.+||.++++.+.++..+..+  .++|+|||++|++++          .++.|.+||..+++.+..+..+....  
T Consensus        45 ~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~  122 (373)
T d2madh_          45 AIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD  122 (373)
T ss_pred             CCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeE
Confidence            4567999999999999998776544  799999999998875          45789999999999988876555433  


Q ss_pred             -----EEEEEecCCCEEEEEe--CCCeEEEEEcCCceeeeecccceeEEEEeCCCCEE-EEecCCCcEEEEeCCCCCCCC
Q psy17243         72 -----LAVAVLSDSRRVVTSD--KAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYI-VSGDGDNSLRIWPTSPQTHKD  143 (392)
Q Consensus        72 -----~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~  143 (392)
                           ..+.|+++++.++...  .++.+.+|+....+....... ..++.++++++.+ ++.+.|+.+.+|+........
T Consensus       123 ~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~  201 (373)
T d2madh_         123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGA  201 (373)
T ss_pred             eccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEecc-ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeE
Confidence                 4467888887665543  456778888777665544433 3466677776544 456677777777754321110


Q ss_pred             cce-----------------------eee---------------------------------ccccceEEEEEEcCCCEE
Q psy17243        144 DER-----------------------FTV---------------------------------SHSEEITCFTVTWDSQYL  167 (392)
Q Consensus       144 ~~~-----------------------~~~---------------------------------~~~~~v~~~~~~~~~~~l  167 (392)
                      ...                       ...                                 ........+++++++..+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  281 (373)
T d2madh_         202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI  281 (373)
T ss_pred             EEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeE
Confidence            000                       000                                 001112234555555444


Q ss_pred             ----------EEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCc-EEEEecCCCeEEEEECCCCceeeeeccc
Q psy17243        168 ----------ITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKS-LVVSGSKDSNLIVWDMETGGEEHFLAGH  236 (392)
Q Consensus       168 ----------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  236 (392)
                                +....++.+.+||..+++.+..+. +...+..++|+|++.. ++++++.|+.|++||+.+++.+..+..+
T Consensus       282 ~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             EEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence                      344556789999999999888775 6677899999954433 4578899999999999999999999988


Q ss_pred             ccceeEEEEcCC
Q psy17243        237 LGCVTCVKLAGD  248 (392)
Q Consensus       237 ~~~v~~~~~~~d  248 (392)
                      ......+++.++
T Consensus       361 g~~P~~l~~~~~  372 (373)
T d2madh_         361 GSGPQVLSVMNE  372 (373)
T ss_pred             CCCCcEEEEecC
Confidence            777777776654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=7e-17  Score=138.77  Aligned_cols=290  Identities=10%  Similarity=-0.028  Sum_probs=173.4

Q ss_pred             CeeEEEecCCCCeEEEEe-----CCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe----------CCCeE
Q psy17243         28 TVSCVAISPNSIFAVSGS-----EDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD----------KAGVI   92 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~-----~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i   92 (392)
                      ++.-.+.+||++.+++..     .++.|.+||..+++.+.++..+..+  .++|+||+++|++.+          .++.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            344456789999887653     4567999999999999988765444  799999999887653          47899


Q ss_pred             EEEEcCCceeeeeccc----------ceeEEEEeCCCCEEEEec--CCCcEEEEeCCCCCCCCcceeee----ccccceE
Q psy17243         93 AVWVADNAQLLYSALG----------PSKCLTVTHNMKYIVSGD--GDNSLRIWPTSPQTHKDDERFTV----SHSEEIT  156 (392)
Q Consensus        93 ~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~----~~~~~v~  156 (392)
                      ++||+.+++.+.....          ....+.|++++++++++.  .+..+.+|+..+...........    .......
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            9999999987765432          234688999999888764  45788999987543222111100    0011223


Q ss_pred             EEEEEcCCCEEEEee-CCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceee--ee
Q psy17243        157 CFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH--FL  233 (392)
Q Consensus       157 ~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~  233 (392)
                      .+.++++++.++... .++.+.+++.....     ..+...+....+. .++..++.++.++.+++|++..++...  ..
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  234 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYS-QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV  234 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEE-TTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeecccc-CCCCeEEEecCCCeEEEEecCCCcEEEEecc
Confidence            345555555444332 23344444433322     1233445566777 556667778899999999998876432  11


Q ss_pred             ccc----------ccceeEEEEcCCCeEEEEcCCCCCCCCCCCccccccccccccceeEEEeccCCcceeEEEeeccccc
Q psy17243        234 AGH----------LGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERL  303 (392)
Q Consensus       234 ~~~----------~~~v~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (392)
                      ..+          ......+++++++..+++............         .......|....+.....          
T Consensus       235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---------~~~~v~v~d~~t~~~~~~----------  295 (355)
T d2bbkh_         235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT---------ASRFVVVLDAKTGERLAK----------  295 (355)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS---------CEEEEEEEETTTCCEEEE----------
T ss_pred             CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecC---------CCCeEEEEeCCCCcEEEE----------
Confidence            111          123345788899888776542221111100         011112222222111100          


Q ss_pred             ceeEEEeeccccceecceeccCCCCCCChhhhh-hhcccChHHHHHHhhCCCCCCcc
Q psy17243        304 KRRFSVSASMEEISKIPIKDNVGSQGLGPEQAA-LAQSQHFDQLEALWNKKSPPRSR  359 (392)
Q Consensus       304 ~~~~~~s~s~d~~~~~~~~~~~~~~~~s~dg~~-la~s~~~d~~i~~Wd~~~~~~~~  359 (392)
                                     +.........+|+|||+. |+++++.|+.|++||+.+++..+
T Consensus       296 ---------------~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~  337 (355)
T d2bbkh_         296 ---------------FEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR  337 (355)
T ss_dssp             ---------------EEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             ---------------ecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEE
Confidence                           001111223379999984 44578889999999999987733

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=2.5e-16  Score=136.14  Aligned_cols=229  Identities=7%  Similarity=-0.073  Sum_probs=151.7

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEe----------CCCeEEEEeCCCCceeEEeccccc-----
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS----------EDNTAKVWGLTLGSVVSTFKSHQS-----   69 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~-----   69 (392)
                      +..|.+||..+++.+..+..+..+  .++|+|||++|++.+          .|+.|.+||..+++.+..+..+..     
T Consensus        45 ~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~  122 (368)
T d1mdah_          45 TTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             SEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             cceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc
Confidence            345778899999999988876654  689999999888754          467899999999999888764432     


Q ss_pred             --ceEEEEEecCCCEEEEEe-CCCeEEEEEcCCceeeeecccce----------eEEEEeCCCCEEEEecC---------
Q psy17243         70 --TILAVAVLSDSRRVVTSD-KAGVIAVWVADNAQLLYSALGPS----------KCLTVTHNMKYIVSGDG---------  127 (392)
Q Consensus        70 --~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~---------  127 (392)
                        ....++|+|||++|+++. .++.+.+||+.+++.+.....+-          ..+.+++++..++....         
T Consensus       123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~  202 (368)
T d1mdah_         123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             cCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeee
Confidence              234689999999998876 56999999999998776543321          12223333332222211         


Q ss_pred             ---------------------------CCcEEEEeCCCCCCCCcceeee---------ccccceEEEEEEcCCCEEEEee
Q psy17243        128 ---------------------------DNSLRIWPTSPQTHKDDERFTV---------SHSEEITCFTVTWDSQYLITGS  171 (392)
Q Consensus       128 ---------------------------d~~i~~~d~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~  171 (392)
                                                 .+.+.+++..............         ........+++++++..++...
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~  282 (368)
T d1mdah_         203 GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             ecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEe
Confidence                                       1222223322111000000000         0011223467888888776653


Q ss_pred             CC---------CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCc-EEEEecCCCeEEEEECCCCceeeeeccc
Q psy17243        172 RD---------MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKS-LVVSGSKDSNLIVWDMETGGEEHFLAGH  236 (392)
Q Consensus       172 ~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  236 (392)
                      .+         ..|.+||..+++.+..+. +...+..++|+|++.. +++++..++.|++||..+++.+..++..
T Consensus       283 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         283 VEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             cCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence            32         358999999999887776 3457889999955444 4567788999999999999999888743

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.70  E-value=8.5e-16  Score=137.31  Aligned_cols=123  Identities=11%  Similarity=0.050  Sum_probs=98.1

Q ss_pred             cCCeEEEEECCCccceeee-----ccCCcCeeEEEecCCCCeEEEEeC---------CCeEEEEeCCCCceeEEeccccc
Q psy17243          4 MDCLVNVWQMNSHELQSTM-----EGHLNTVSCVAISPNSIFAVSGSE---------DNTAKVWGLTLGSVVSTFKSHQS   69 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~   69 (392)
                      .|+.|.+||+.+++....+     ..|...|.++.||||+++|+.++.         ++.+.+||+++++. ..+..+..
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~  112 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPN  112 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCT
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCc
Confidence            4778999999999876544     445688999999999999998753         57789999998874 45777889


Q ss_pred             ceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc---------------------cceeEEEEeCCCCEEEEecCC
Q psy17243         70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL---------------------GPSKCLTVTHNMKYIVSGDGD  128 (392)
Q Consensus        70 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~d  128 (392)
                      .+..+.|+|||+.|+.. .++.+++|+..+++......                     +....+.|+|||++|+....|
T Consensus       113 ~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         113 NTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             TEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             cccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            99999999999999986 46789999998886654322                     123467899999999987654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.64  E-value=1.6e-14  Score=124.10  Aligned_cols=251  Identities=12%  Similarity=0.064  Sum_probs=169.4

Q ss_pred             CCccCCeEEEEECCCccceeeecc------------------------------CCcCeeEEEecCCCCeEEEE-eCCCe
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEG------------------------------HLNTVSCVAISPNSIFAVSG-SEDNT   49 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~------------------------------h~~~v~~~~~~~~~~~l~~~-~~dg~   49 (392)
                      ||+.+|.|+||++.+++.++.+.-                              |.-.......+|||++|++. ..++.
T Consensus        16 Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~r   95 (441)
T d1qnia2          16 SGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTR   95 (441)
T ss_dssp             ECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTE
T ss_pred             eCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCE
Confidence            578899999999999887776521                              22334455567899988665 56789


Q ss_pred             EEEEeCCCCceeEEecc-cccceEEEEEecCCC--EEEEEeCCC-----------------eEEEEEcCCceeeeecc--
Q psy17243         50 AKVWGLTLGSVVSTFKS-HQSTILAVAVLSDSR--RVVTSDKAG-----------------VIAVWVADNAQLLYSAL--  107 (392)
Q Consensus        50 v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~--~l~~~~~d~-----------------~i~iwd~~~~~~~~~~~--  107 (392)
                      |.++|+++++..+.+.. +...+..++|+|+++  +++..+.+.                 .+..+|..+.+......  
T Consensus        96 VavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~  175 (441)
T d1qnia2          96 VARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD  175 (441)
T ss_dssp             EEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES
T ss_pred             EEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC
Confidence            99999999998876652 567789999999998  444444432                 23557777776655433  


Q ss_pred             cceeEEEEeCCCCEEEEecCCC-----------------------------------------cEEEEeCCCCCCCCcce
Q psy17243        108 GPSKCLTVTHNMKYIVSGDGDN-----------------------------------------SLRIWPTSPQTHKDDER  146 (392)
Q Consensus       108 ~~~~~~~~~~~~~~l~~~~~d~-----------------------------------------~i~~~d~~~~~~~~~~~  146 (392)
                      +....+.++|+++++++.+.+.                                         .+.+++..   ......
T Consensus       176 ~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~---~~~v~~  252 (441)
T d1qnia2         176 GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG---ESEFTR  252 (441)
T ss_dssp             SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS---SCSSEE
T ss_pred             CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc---CCceEE
Confidence            3556889999999988876542                                         11222211   111111


Q ss_pred             eeeccccceEEEEEEcCCCEEEE-eeCCCcEEEEEcCCCeE--------EEEEecCC---CceeEEEEecCCCcEEEEec
Q psy17243        147 FTVSHSEEITCFTVTWDSQYLIT-GSRDMSLKVWQVVGGKL--------AQVLVGHT---DHVSCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~--------~~~~~~~~---~~v~~~~~~~~~~~~l~~~~  214 (392)
                      . ..-......+.++|||+++++ +..+++|.+||+.+.+.        ...+.++.   -.....+|. +++..+.+..
T Consensus       253 ~-IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd-~~g~~yts~~  330 (441)
T d1qnia2         253 Y-IPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFD-GRGNAYTTLF  330 (441)
T ss_dssp             E-ECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEEC-SSSEEEEEET
T ss_pred             E-EeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceec-CCceEEEccc
Confidence            2 222344577899999998765 56799999999865321        01111111   123445788 6778888889


Q ss_pred             CCCeEEEEECCC---------C-ceeeee-----cccccceeEEEEcCCCeEEEEcC
Q psy17243        215 KDSNLIVWDMET---------G-GEEHFL-----AGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       215 ~dg~i~iwd~~~---------~-~~~~~~-----~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      .|..|..|++..         . ..+..+     .+|...+.+.+++|||+++++..
T Consensus       331 ~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         331 IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             ccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            999999999742         1 122233     57888888889999999999984

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.62  E-value=2.8e-15  Score=133.91  Aligned_cols=215  Identities=7%  Similarity=-0.032  Sum_probs=136.7

Q ss_pred             eEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec-----ccccceEEEEEecCCCEEEEEeC---------CCeEEEE
Q psy17243         30 SCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-----SHQSTILAVAVLSDSRRVVTSDK---------AGVIAVW   95 (392)
Q Consensus        30 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iw   95 (392)
                      ..+.|.++++++..  .++.+.+||+.+++....+.     .|...|.++.|+||+++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            45789999987764  57889999999998766554     34578999999999999998753         5678999


Q ss_pred             EcCCceeee--ecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceee------e---------ccccceEEE
Q psy17243         96 VADNAQLLY--SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT------V---------SHSEEITCF  158 (392)
Q Consensus        96 d~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------~---------~~~~~v~~~  158 (392)
                      |+.+++...  .....+....|+|+|+.++.. .++.+.+|+...+.........      .         ........+
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~  176 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence            999987643  344567889999999999986 5678999998755432211100      0         112334567


Q ss_pred             EEEcCCCEEEEeeCCCc-EEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec---
Q psy17243        159 TVTWDSQYLITGSRDMS-LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA---  234 (392)
Q Consensus       159 ~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---  234 (392)
                      .|+|||++|+....|.. +..|.+......   .........+.+. ..+    ....+..+.+|++..++......   
T Consensus       177 ~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~-~~g----~~~~~~~~~v~~~~~~~~~~~~~~~~  248 (470)
T d2bgra1         177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYP-KAG----AVNPTVKFFVVNTDSLSSVTNATSIQ  248 (470)
T ss_dssp             EECTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECC-BTT----SCCCEEEEEEEEGGGCCSSSCCCEEE
T ss_pred             EECCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeeccc-ccc----ccCCcceEEEEECCCcceeeeccccc
Confidence            89999999998875533 444433110000   0001111222221 111    11234568889887765433221   


Q ss_pred             --------ccccceeEEEEcCCCeEEEEc
Q psy17243        235 --------GHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       235 --------~~~~~v~~~~~~~dg~~~~~~  255 (392)
                              .....+..+.|.+++++++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  277 (470)
T d2bgra1         249 ITAPASMLIGDHYLCDVTWATQERISLQW  277 (470)
T ss_dssp             ECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             cCCccccCCCCceEEEEEEcCCCceeEEE
Confidence                    122356788899888876653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.57  E-value=9.2e-13  Score=113.14  Aligned_cols=181  Identities=10%  Similarity=0.045  Sum_probs=121.0

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEecc------------------------------cccceEEEEEecCCCEEEEEe-CC
Q psy17243         41 AVSGSEDNTAKVWGLTLGSVVSTFKS------------------------------HQSTILAVAVLSDSRRVVTSD-KA   89 (392)
Q Consensus        41 l~~~~~dg~v~iwd~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~~-~d   89 (392)
                      +++++.+|.|.+|++.+++.++++..                              |..........|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            66888999999999999988887632                              112234445578999987665 67


Q ss_pred             CeEEEEEcCCceeeeecc----cceeEEEEeCCCCE--EEEecCCC-----------------cEEEEeCCCCCCCCcce
Q psy17243         90 GVIAVWVADNAQLLYSAL----GPSKCLTVTHNMKY--IVSGDGDN-----------------SLRIWPTSPQTHKDDER  146 (392)
Q Consensus        90 ~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~--l~~~~~d~-----------------~i~~~d~~~~~~~~~~~  146 (392)
                      +.|.++|+.+++......    .....++++|+++.  ++..+.+.                 .+..+|..+....    
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~----  169 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA----  169 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE----
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee----
Confidence            899999999998766433    35678999999984  44433322                 1234555432211    


Q ss_pred             eeeccccceEEEEEEcCCCEEEEeeCC-----------------------------------------CcEEEEEcCCCe
Q psy17243        147 FTVSHSEEITCFTVTWDSQYLITGSRD-----------------------------------------MSLKVWQVVGGK  185 (392)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------------------------------g~i~i~d~~~~~  185 (392)
                      ....-......+.++|+|+++++.+.+                                         +.+.+++....+
T Consensus       170 ~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         170 WQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             EEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            111223456788999999998887644                                         233444444445


Q ss_pred             EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCC
Q psy17243        186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET  226 (392)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  226 (392)
                      .+..+..... ...+.++|++..+++++..+++|.|||+.+
T Consensus       250 v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         250 FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             eEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            5555655443 567899965555667788999999999875

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=5.4e-11  Score=96.63  Aligned_cols=226  Identities=12%  Similarity=0.035  Sum_probs=149.6

Q ss_pred             cCeeEEEecCCCCeEEEE-eCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee
Q psy17243         27 NTVSCVAISPNSIFAVSG-SEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS  105 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  105 (392)
                      ..-..+++.++|...++. +..+.+..++...................+++.++++.+++....+.+++++..+...+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            345799999999865554 4557777776554433222222223457889999998777766666777766665555443


Q ss_pred             cc--cceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCC
Q psy17243        106 AL--GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG  183 (392)
Q Consensus       106 ~~--~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  183 (392)
                      ..  .....+++.++++++++-..+..+..++......   .............+++.++++++++...++.|..+|...
T Consensus        94 ~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          94 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC---EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eeeeeecccccccccceeEeecccccccccccccccee---eeeeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence            33  3457899999999888777777788877653221   111112234457889999999888888888999999775


Q ss_pred             CeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ..........-.....+++. ++++++++....+.|..++.............-.....|+++++|.+.+++.
T Consensus       171 ~~~~~~~~~~~~~p~gi~~d-~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         171 NNQVVLPFTDITAPWGIAVD-EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             CCEEECCCSSCCSEEEEEEC-TTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEG
T ss_pred             ceeeeeeccccCCCccceee-eeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEEC
Confidence            54433333344567889998 6678888888888999888764432222222334567999999999888864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=7.2e-12  Score=107.64  Aligned_cols=188  Identities=11%  Similarity=-0.059  Sum_probs=121.1

Q ss_pred             CccCCeEEEEECCCccceeeeccCCc-------CeeEEEecCCCCeEEEEe-CCCeEEEEeCCCCceeEEeccccc----
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLN-------TVSCVAISPNSIFAVSGS-EDNTAKVWGLTLGSVVSTFKSHQS----   69 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~----   69 (392)
                      |..|+.|.+||..+++.+..+..+..       ....++|+|||++|+++. .++.+.+||+.+++....+..+..    
T Consensus        92 g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  171 (368)
T d1mdah_          92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH  171 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE
T ss_pred             cccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc
Confidence            56788999999999998888764432       234689999999998776 569999999999998887754332    


Q ss_pred             ---ceEEEEEecCCCEEEEEeCC------------------------------------CeEEEEEcCCceeeeec--c-
Q psy17243         70 ---TILAVAVLSDSRRVVTSDKA------------------------------------GVIAVWVADNAQLLYSA--L-  107 (392)
Q Consensus        70 ---~v~~~~~~~~~~~l~~~~~d------------------------------------~~i~iwd~~~~~~~~~~--~-  107 (392)
                         ....+.+++++..++....+                                    +.+.++++.........  . 
T Consensus       172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~  251 (368)
T d1mdah_         172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDG  251 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCS
T ss_pred             cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeeccc
Confidence               12233444444433332211                                    12222232222211100  0 


Q ss_pred             ------------cceeEEEEeCCCCEEEEecCC---------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCC-
Q psy17243        108 ------------GPSKCLTVTHNMKYIVSGDGD---------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQ-  165 (392)
Q Consensus       108 ------------~~~~~~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  165 (392)
                                  .....+++++++..+++...+         ..|.+||..+.+.....    .....+..++|+||++ 
T Consensus       252 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~----~~~~~~~~~a~spDG~~  327 (368)
T d1mdah_         252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI----SNGHDSDAIIAAQDGAS  327 (368)
T ss_dssp             SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC----EEEEEECEEEECCSSSC
T ss_pred             ccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe----cCCCceeEEEECCCCCE
Confidence                        012346778888877665332         35889998755432222    3345788899999986 


Q ss_pred             E-EEEeeCCCcEEEEEcCCCeEEEEEecC
Q psy17243        166 Y-LITGSRDMSLKVWQVVGGKLAQVLVGH  193 (392)
Q Consensus       166 ~-l~~~~~dg~i~i~d~~~~~~~~~~~~~  193 (392)
                      + ++++..++.|++||..+++.+..+...
T Consensus       328 ~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         328 DNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             EEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence            3 456667899999999999999888743

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.9e-08  Score=81.64  Aligned_cols=232  Identities=13%  Similarity=0.012  Sum_probs=142.5

Q ss_pred             eEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC---CeEEEEeCCCCceeEEecccccceEEEEEecCCCEE
Q psy17243          7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED---NTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV   83 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   83 (392)
                      .|.|-|.. |...+.+..+...+...+|||||+.||.....   ..+.+.+...+.... +..+........|+|+++.+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE-EeeeecccccceecCCCCee
Confidence            58888876 44555555577889999999999999876443   346677766665543 44467788899999999988


Q ss_pred             EEEeCC-Ce--EEEEEcCCceeeeecc--cceeEEEEeCCCCEEEE-ecCCCc--EEEEeCCCCCCCCcceeeeccccce
Q psy17243         84 VTSDKA-GV--IAVWVADNAQLLYSAL--GPSKCLTVTHNMKYIVS-GDGDNS--LRIWPTSPQTHKDDERFTVSHSEEI  155 (392)
Q Consensus        84 ~~~~~d-~~--i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~v  155 (392)
                      +..... +.  +..+............  .......+++++..++. ...++.  |.+.++....    ...........
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~----~~~~~~~~~~~  173 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----PQRITWEGSQN  173 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----CEECCCSSSEE
T ss_pred             eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccc----ceeeecccccc
Confidence            876543 22  3333333333322222  23334456666665444 344554  4455554221    12222345666


Q ss_pred             EEEEEEcCCCEEEEeeCC-C--cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecC--CCeEEEEECCCCcee
Q psy17243        156 TCFTVTWDSQYLITGSRD-M--SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK--DSNLIVWDMETGGEE  230 (392)
Q Consensus       156 ~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~  230 (392)
                      ....|+|+++.++..+.+ +  .+.+.+...+.  .....+........|+|++..++++...  ...|+++++..+.. 
T Consensus       174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-  250 (269)
T d2hqsa1         174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-  250 (269)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-
T ss_pred             cccccccccceeEEEeecCCceeeeEeeccccc--ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-
Confidence            778899999988876654 3  34444544443  2333455666778999544444444432  34688999986554 


Q ss_pred             eeecccccceeEEEEcC
Q psy17243        231 HFLAGHLGCVTCVKLAG  247 (392)
Q Consensus       231 ~~~~~~~~~v~~~~~~~  247 (392)
                      ..+....+.+...+|||
T Consensus       251 ~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         251 ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EECCCSSSEEEEEEECC
T ss_pred             EEEeCCCCcEEeEEeCC
Confidence            45655677888889998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.26  E-value=1.7e-08  Score=83.82  Aligned_cols=223  Identities=10%  Similarity=0.066  Sum_probs=146.6

Q ss_pred             CeeEEEecCCCCeEEEEeC-------CCeEEEEeCCCCceeEEeccc----ccceEEEEEecCCCEEEEEeCCCeEEEEE
Q psy17243         28 TVSCVAISPNSIFAVSGSE-------DNTAKVWGLTLGSVVSTFKSH----QSTILAVAVLSDSRRVVTSDKAGVIAVWV   96 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~-------dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd   96 (392)
                      ..-.++|.++|+++++...       +|.|..||.++++........    .+.-..++|.++++.++++.....+...+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            4567899999987665432       467899998887654433221    22357899999999998888888899999


Q ss_pred             cCCceeeeec---cc----ceeEEEEeCCCCEEEEecC---------------CCcEEEEeCCCCCCCCcceeeeccccc
Q psy17243         97 ADNAQLLYSA---LG----PSKCLTVTHNMKYIVSGDG---------------DNSLRIWPTSPQTHKDDERFTVSHSEE  154 (392)
Q Consensus        97 ~~~~~~~~~~---~~----~~~~~~~~~~~~~l~~~~~---------------d~~i~~~d~~~~~~~~~~~~~~~~~~~  154 (392)
                      .+........   .+    ..+.+.+.++|++.++-..               .|.|..++..   .  ........-..
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d---g--~~~~~~~~~~~  173 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD---G--QMIQVDTAFQF  173 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT---S--CEEEEEEEESS
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec---C--ceeEeeCCcce
Confidence            8766443211   11    2356889999987766322               2344444432   1  11111122334


Q ss_pred             eEEEEEEcCCC-----EEEEeeCCCcEEEEEcCCCeEEE------EEec-CCCceeEEEEecCCCcEEEEecCCCeEEEE
Q psy17243        155 ITCFTVTWDSQ-----YLITGSRDMSLKVWQVVGGKLAQ------VLVG-HTDHVSCVAVAVTNKSLVVSGSKDSNLIVW  222 (392)
Q Consensus       155 v~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~------~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  222 (392)
                      .+.++|+++++     ++++-+..+.|..||+.....+.      .+.. +......+++. .++++.++....+.|.+|
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD-~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEE
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEe-cCCcEEEEEcCCCEEEEE
Confidence            46789999864     44445667889999875432221      1111 12235678898 678888887788999999


Q ss_pred             ECCCCceeeeecccccceeEEEEcCCCe-EEEEcC
Q psy17243        223 DMETGGEEHFLAGHLGCVTCVKLAGDGT-VAMSDL  256 (392)
Q Consensus       223 d~~~~~~~~~~~~~~~~v~~~~~~~dg~-~~~~~~  256 (392)
                      |.+.++.+..+.......++++|.||++ +.++..
T Consensus       253 dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             eCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC
Confidence            9988887777776667889999999986 556654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.23  E-value=5.4e-09  Score=86.92  Aligned_cols=222  Identities=9%  Similarity=0.041  Sum_probs=141.8

Q ss_pred             CCeEEEEECCCccceeeeccC----CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccc----cceEEEEE
Q psy17243          5 DCLVNVWQMNSHELQSTMEGH----LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQ----STILAVAV   76 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~v~~~~~   76 (392)
                      +|.|..||..+++........    ...-..++|.+++..|+++...+.|...+.+............    ...+.+++
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~  124 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAF  124 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEE
T ss_pred             CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEE
Confidence            456777777766543332211    1234679999999888888777778888876553322111111    13578999


Q ss_pred             ecCCCEEEEEeC---------------CCeEEEEEcCCcee-eeecccceeEEEEeCCCC----EE-EEecCCCcEEEEe
Q psy17243         77 LSDSRRVVTSDK---------------AGVIAVWVADNAQL-LYSALGPSKCLTVTHNMK----YI-VSGDGDNSLRIWP  135 (392)
Q Consensus        77 ~~~~~~l~~~~~---------------d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~----~l-~~~~~d~~i~~~d  135 (392)
                      .++|+..++-..               .|.|..++.+.... +.......+.++++++++    .| ++-+..+.|..|+
T Consensus       125 d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d  204 (314)
T d1pjxa_         125 DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYD  204 (314)
T ss_dssp             CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEee
Confidence            999987776432               23454454432211 111122346788988764    44 4456788899998


Q ss_pred             CCCCCCCCcceeee----ccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEE
Q psy17243        136 TSPQTHKDDERFTV----SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       136 ~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  211 (392)
                      +.............    ........+++..+|++.++....+.|.+||...++.+..+.......++++|.|....+++
T Consensus       205 ~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyV  284 (314)
T d1pjxa_         205 IKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFV  284 (314)
T ss_dssp             EEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             ccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEE
Confidence            75332221111111    12234567899999998888778899999999888777777666677899999964445778


Q ss_pred             EecCCCeEEEEECCC
Q psy17243        212 SGSKDSNLIVWDMET  226 (392)
Q Consensus       212 ~~~~dg~i~iwd~~~  226 (392)
                      +.+.+|.|..+++..
T Consensus       285 t~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         285 TEHENNAVWKFEWQR  299 (314)
T ss_dssp             EETTTTEEEEEECSS
T ss_pred             EECCCCcEEEEECCC
Confidence            888889999888764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.22  E-value=1.2e-08  Score=84.41  Aligned_cols=234  Identities=11%  Similarity=0.021  Sum_probs=153.4

Q ss_pred             CccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEE
Q psy17243         15 SHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAV   94 (392)
Q Consensus        15 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i   94 (392)
                      ..+.+..+.. ...+..+++.|||+++++...+++|..|+.. ++ ...+......+.+++|.++|+.+++...++.+..
T Consensus        17 ~~~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~   93 (302)
T d2p4oa1          17 PAKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPV   93 (302)
T ss_dssp             CEEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             cccEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEE
Confidence            3444445542 2357899999999999999889999888855 33 3334446678999999999999998888888888


Q ss_pred             EEcCCcee----eeec--ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCc-------ceeeeccccceEEEEEE
Q psy17243         95 WVADNAQL----LYSA--LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD-------ERFTVSHSEEITCFTVT  161 (392)
Q Consensus        95 wd~~~~~~----~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-------~~~~~~~~~~v~~~~~~  161 (392)
                      ++......    +...  ......+.+.++++++++-+.++.+..++.........       .............+.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~  173 (302)
T d2p4oa1          94 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF  173 (302)
T ss_dssp             EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred             EEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc
Confidence            87654321    2111  23457888999999988888888888888764321100       00001122344566665


Q ss_pred             cCCCEEEEeeCCCcEEEEEcCCCeEEE--EEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee--eeecccc
Q psy17243        162 WDSQYLITGSRDMSLKVWQVVGGKLAQ--VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE--HFLAGHL  237 (392)
Q Consensus       162 ~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~  237 (392)
                      . +.++++.+..+.|..++........  ...........+++. .+++++++...++.|..++.. ++..  .......
T Consensus       174 ~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d-~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~  250 (302)
T d2p4oa1         174 G-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD-VEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV  250 (302)
T ss_dssp             T-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEB-TTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred             C-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEEC-CCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCC
Confidence            3 3355556678888888876543221  111223446679999 677888888889999999875 4332  2333334


Q ss_pred             cceeEEEE---cCCCeEEEE
Q psy17243        238 GCVTCVKL---AGDGTVAMS  254 (392)
Q Consensus       238 ~~v~~~~~---~~dg~~~~~  254 (392)
                      ...++++|   ++|++.|..
T Consensus       251 ~~pt~vafg~~~~D~~~Lyv  270 (302)
T d2p4oa1         251 IGSTAVAFGQTEGDCTAIYV  270 (302)
T ss_dssp             TTEEEEEECCSTTTTTEEEE
T ss_pred             CCceEEEEcCCCCCCCEEEE
Confidence            56789999   678776543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.20  E-value=1.1e-07  Score=79.12  Aligned_cols=224  Identities=9%  Similarity=-0.011  Sum_probs=147.1

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeC----CCeEEEEEcCCce
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK----AGVIAVWVADNAQ  101 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~  101 (392)
                      ...+..++|.++|++.++-...+.|..|+.+.++....+.........+++.++|+.+++...    .+.+...+.....
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            344578999999997777778899999998887766665555667889999999987776543    2345555555544


Q ss_pred             eeeecc-----cceeEEEEeCCCCEEEEecC------CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEe
Q psy17243        102 LLYSAL-----GPSKCLTVTHNMKYIVSGDG------DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITG  170 (392)
Q Consensus       102 ~~~~~~-----~~~~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  170 (392)
                      ......     .....+.+.++|++.++...      .+.+..++....    ........-...+.++|+|+++.|+.+
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~----~~~~~~~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR----TVTPIIQNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC----CEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc----eeEEEeeccceeeeeeeccccceEEEe
Confidence            332221     13467889999986665322      133555544311    111112223445789999999866555


Q ss_pred             -eCCCcEEEEEcCCC-eEEE----E---EecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc------
Q psy17243        171 -SRDMSLKVWQVVGG-KLAQ----V---LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG------  235 (392)
Q Consensus       171 -~~dg~i~i~d~~~~-~~~~----~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------  235 (392)
                       +..+.|..|++... ....    .   ..........+++. .++++.++...++.|.+||- +++.+..+..      
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD-~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~  272 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEG  272 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGT
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEc-CCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCC
Confidence             55789999998643 1111    1   11112335678998 67888888888999999995 6888876642      


Q ss_pred             cccceeEEEEcCCCeEEEEc
Q psy17243        236 HLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       236 ~~~~v~~~~~~~dg~~~~~~  255 (392)
                      +...+++++|.+++..++..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~t  292 (319)
T d2dg1a1         273 HMLRSTHPQFIPGTNQLIIC  292 (319)
T ss_dssp             CSCBCCEEEECTTSCEEEEE
T ss_pred             cCceeeeEEEeCCCCEEEEE
Confidence            33467899999987766554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=8.2e-09  Score=83.45  Aligned_cols=192  Identities=9%  Similarity=0.036  Sum_probs=130.0

Q ss_pred             CeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee--
Q psy17243         28 TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS--  105 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--  105 (392)
                      ....+++++++.++++....+.+++++-.+...+.... .......+++.++++.+++-.....+..++.........  
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~  136 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF  136 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeee
Confidence            45788999999887777766777776655555443333 234568999999998887776677788777765543221  


Q ss_pred             -cccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCC
Q psy17243        106 -ALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG  184 (392)
Q Consensus       106 -~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  184 (392)
                       -......+++.++++.+++...++.|..++.....   ..............+++.++++++++....+.|..++....
T Consensus       137 ~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         137 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             cccCCcceeeecCCCCEeeeccccccccccccccce---eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence             12345689999999988888888999999876332   12222234456688999999988888877888888886544


Q ss_pred             eEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEEC
Q psy17243        185 KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM  224 (392)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  224 (392)
                      .........-.....|+++ +++.++++-..++.|+.++.
T Consensus       214 ~~~~~~~~~~~~P~~i~~d-~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         214 TSTVLPFTGLNTPLAVAVD-SDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CCEECCCCSCCCEEEEEEC-TTCCEEEEEGGGTEEEEECC
T ss_pred             eEEEEccCCCCCeEEEEEe-CCCCEEEEECCCCEEEEEeC
Confidence            3222112222456789998 56777777666777765553

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.16  E-value=1.2e-09  Score=93.19  Aligned_cols=214  Identities=9%  Similarity=0.059  Sum_probs=122.6

Q ss_pred             EEEEeC--CCeEEEEeC--CCCce--eEEec-ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCc-eeeee----ccc
Q psy17243         41 AVSGSE--DNTAKVWGL--TLGSV--VSTFK-SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA-QLLYS----ALG  108 (392)
Q Consensus        41 l~~~~~--dg~v~iwd~--~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~----~~~  108 (392)
                      |+.|+.  .+.|..+.+  ++++.  +.... .....+..|+|+|+++.|+++.. +.+..|.+... ..+..    ...
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            555543  456655544  44443  22211 23445677999999999988765 55777766532 22211    122


Q ss_pred             ceeEEEEeCCCCEEEE--ec-CCCcEEEEeCCCCCCC---------Cc-----ceeeeccccceEEEEEEcCCCEEEEee
Q psy17243        109 PSKCLTVTHNMKYIVS--GD-GDNSLRIWPTSPQTHK---------DD-----ERFTVSHSEEITCFTVTWDSQYLITGS  171 (392)
Q Consensus       109 ~~~~~~~~~~~~~l~~--~~-~d~~i~~~d~~~~~~~---------~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~  171 (392)
                      ....+.++++++.+++  +. ..+.+..+.+......         ..     ..........+.++.|+|+++++++++
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            3446777888875433  22 2455555443211100         00     000112233578999999999888876


Q ss_pred             C-CCcEEEEEcCCC-eEE--EEEe--cCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeec-----------
Q psy17243        172 R-DMSLKVWQVVGG-KLA--QVLV--GHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA-----------  234 (392)
Q Consensus       172 ~-dg~i~i~d~~~~-~~~--~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------  234 (392)
                      . ...|.+|+.... ...  ....  ........++|+|....+.++...++.|.+|++..++......           
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~  243 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence            4 457888876543 222  2222  2345678899995555455666678999999987654322111           


Q ss_pred             --------ccccceeEEEEcCCCeEEEEc
Q psy17243        235 --------GHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       235 --------~~~~~v~~~~~~~dg~~~~~~  255 (392)
                              .+......+.++|||++++..
T Consensus       244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         244 PDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             cccccccccccCCccceEECCCCCEEEEE
Confidence                    111235678999999998875

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.3e-08  Score=89.41  Aligned_cols=250  Identities=9%  Similarity=-0.004  Sum_probs=145.0

Q ss_pred             cCCeEEEEECCCccceeeecc---CCcCeeEEEecCCCCeEEEEe---------CCCeEEEEeCCCCceeEEec--cccc
Q psy17243          4 MDCLVNVWQMNSHELQSTMEG---HLNTVSCVAISPNSIFAVSGS---------EDNTAKVWGLTLGSVVSTFK--SHQS   69 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~--~~~~   69 (392)
                      .+|.|.+||+.+++....+..   ..-.+....||||+++++...         ..+.+.++|+.++.......  ....
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~  114 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA  114 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCcc
Confidence            578899999988776444433   234677889999999887753         35788999999887543322  2344


Q ss_pred             ceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeecc---------------------cceeEEEEeCCCCEEEEecCC
Q psy17243         70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSAL---------------------GPSKCLTVTHNMKYIVSGDGD  128 (392)
Q Consensus        70 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~d  128 (392)
                      .+....|+|+|+.|+-.. ++.|.+.+..++...+...                     .....+.|+|||++|+....|
T Consensus       115 ~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D  193 (465)
T d1xfda1         115 KLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (465)
T ss_dssp             CCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence            566789999999988765 5678888877665433211                     112467799999999986432


Q ss_pred             -Cc---------------------------------EEEEeCCCCCCCCccee---eeccccceEEEEEEcCCCEEEEee
Q psy17243        129 -NS---------------------------------LRIWPTSPQTHKDDERF---TVSHSEEITCFTVTWDSQYLITGS  171 (392)
Q Consensus       129 -~~---------------------------------i~~~d~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~  171 (392)
                       ..                                 +.++|+...........   .......+..+.|++++++++...
T Consensus       194 ~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~  273 (465)
T d1xfda1         194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL  273 (465)
T ss_dssp             CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred             ccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEE
Confidence             22                                 33444432211100000   011223467788999887666543


Q ss_pred             C----CCcEEEEEcCCCeEEEEEecCC-Cce----eEEEEecCCCcEEE--EecCCC--eEEEEECC------CCceeee
Q psy17243        172 R----DMSLKVWQVVGGKLAQVLVGHT-DHV----SCVAVAVTNKSLVV--SGSKDS--NLIVWDME------TGGEEHF  232 (392)
Q Consensus       172 ~----dg~i~i~d~~~~~~~~~~~~~~-~~v----~~~~~~~~~~~~l~--~~~~dg--~i~iwd~~------~~~~~~~  232 (392)
                      .    ...+.++|..+++....+.... ..|    ....|++.+..+++  ....+|  .+....+.      .++.+..
T Consensus       274 nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~  353 (465)
T d1xfda1         274 NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS  353 (465)
T ss_dssp             ETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB
T ss_pred             ccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEE
Confidence            2    2368889999987665544222 212    23467744444322  222333  33333321      2333334


Q ss_pred             ecccccceeEE-EEcCCCeEEEE
Q psy17243        233 LAGHLGCVTCV-KLAGDGTVAMS  254 (392)
Q Consensus       233 ~~~~~~~v~~~-~~~~dg~~~~~  254 (392)
                      +....-.|..+ .|+.++..+..
T Consensus       354 LT~G~w~V~~i~~~d~~~~~vyF  376 (465)
T d1xfda1         354 ITSGDWDVTKILAYDEKGNKIYF  376 (465)
T ss_dssp             SCCSSSCEEEEEEEETTTTEEEE
T ss_pred             eccCCceEEEEEEEcCCCCEEEE
Confidence            43333355554 57777665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.5e-09  Score=92.35  Aligned_cols=216  Identities=11%  Similarity=0.040  Sum_probs=130.6

Q ss_pred             EEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc---cccceEEEEEecCCCEEEEEe---------CCCeEEEEEcCC
Q psy17243         32 VAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS---HQSTILAVAVLSDSRRVVTSD---------KAGVIAVWVADN   99 (392)
Q Consensus        32 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~---------~d~~i~iwd~~~   99 (392)
                      ..|.+++.++.. ..+|.|.+||+.+++....+..   ....+....|+||+++++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            468888876654 4678999999988876444432   223567788999999988764         357789999998


Q ss_pred             ceeeeec-----ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccc-----------------cceEE
Q psy17243        100 AQLLYSA-----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS-----------------EEITC  157 (392)
Q Consensus       100 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-----------------~~v~~  157 (392)
                      +......     ...+....|+|+|+.+|... ++.|.+.+...+....  ....+..                 ..-..
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~--lt~~g~~~~i~nG~~d~vyeee~~~~~~a  177 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIR--VVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEE--EECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEE--EecccCcceeeccccchhhhhhhccccce
Confidence            8653321     12334578999999998875 5677777765332211  1111111                 11256


Q ss_pred             EEEEcCCCEEEEeeC-CCc---------------------------------EEEEEcCCCeEEEEEe------cCCCce
Q psy17243        158 FTVTWDSQYLITGSR-DMS---------------------------------LKVWQVVGGKLAQVLV------GHTDHV  197 (392)
Q Consensus       158 ~~~~~~~~~l~~~~~-dg~---------------------------------i~i~d~~~~~~~~~~~------~~~~~v  197 (392)
                      +.|||||++|+.... +..                                 +.++|+.++.......      ....-+
T Consensus       178 ~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~  257 (465)
T d1xfda1         178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI  257 (465)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred             EEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccccee
Confidence            779999999987642 222                                 3344443332211110      111235


Q ss_pred             eEEEEecCCCcEEEEec-CC---CeEEEEECCCCceeeeecccc-cce----eEEEEcCCCeEE
Q psy17243        198 SCVAVAVTNKSLVVSGS-KD---SNLIVWDMETGGEEHFLAGHL-GCV----TCVKLAGDGTVA  252 (392)
Q Consensus       198 ~~~~~~~~~~~~l~~~~-~d---g~i~iwd~~~~~~~~~~~~~~-~~v----~~~~~~~dg~~~  252 (392)
                      ..+.|+ +++.+++... .+   ..|.++|..+++....+.... ..|    ....|++||+.+
T Consensus       258 ~~~~W~-~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         258 TMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EEEEES-SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             eeeEEc-CCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence            678888 5556555432 22   358889999988665443222 222    346788998854

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=4.8e-07  Score=73.60  Aligned_cols=220  Identities=18%  Similarity=0.221  Sum_probs=149.7

Q ss_pred             CeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEeccc------ccceEEEEEecCCCEEEEE--eCCCeEEEEEcCC
Q psy17243         28 TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH------QSTILAVAVLSDSRRVVTS--DKAGVIAVWVADN   99 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~   99 (392)
                      .-..++++++++++++-..++.|++||.+ ++.+..+...      ...-..+++.++....+..  +.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            45789999999988877778899999954 7776666321      1124556666654433333  344567777654 


Q ss_pred             ceeeeec----ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCccee-eeccccceEEEEEEcCCCEEEEeeCCC
Q psy17243        100 AQLLYSA----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERF-TVSHSEEITCFTVTWDSQYLITGSRDM  174 (392)
Q Consensus       100 ~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg  174 (392)
                      ++.....    ......+++.+++..+++....+.+.+++....   ..... ...+......+++.++++.+++....+
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~---~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN---VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC---EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc---eeecccccccccccceeeeccceeEEeeecccc
Confidence            4433332    234568889999998888888888888876421   11111 123456678889999998888888889


Q ss_pred             cEEEEEcCCCeEEEEEe--cCCCceeEEEEecCCCcEEEEec-CCCeEEEEECCCCceeeeeccc--ccceeEEEEcCCC
Q psy17243        175 SLKVWQVVGGKLAQVLV--GHTDHVSCVAVAVTNKSLVVSGS-KDSNLIVWDMETGGEEHFLAGH--LGCVTCVKLAGDG  249 (392)
Q Consensus       175 ~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~dg  249 (392)
                      .|++||. +++.+..+.  +.......|++. ++++++++-. .++.|.+|+. +++.+..+...  ......+++.+||
T Consensus       179 ~V~~~d~-~G~~~~~~g~~g~~~~P~giavD-~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG  255 (279)
T d1q7fa_         179 CVKVFNY-EGQYLRQIGGEGITNYPIGVGIN-SNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG  255 (279)
T ss_dssp             EEEEEET-TCCEEEEESCTTTSCSEEEEEEC-TTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred             ceeeeec-CCceeeeecccccccCCcccccc-cCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCC
Confidence            9999996 466666663  234457889999 5667777654 3557999984 58877666432  2357889999999


Q ss_pred             eEEEEc
Q psy17243        250 TVAMSD  255 (392)
Q Consensus       250 ~~~~~~  255 (392)
                      .+++.+
T Consensus       256 ~l~V~~  261 (279)
T d1q7fa_         256 SVVLAS  261 (279)
T ss_dssp             EEEEEE
T ss_pred             cEEEEe
Confidence            988775

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.07  E-value=4e-08  Score=83.49  Aligned_cols=250  Identities=7%  Similarity=-0.036  Sum_probs=143.1

Q ss_pred             CCeEEEEEC--CCccce--eee-ccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEec--ccccceEEEEEe
Q psy17243          5 DCLVNVWQM--NSHELQ--STM-EGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK--SHQSTILAVAVL   77 (392)
Q Consensus         5 dg~i~vwd~--~~~~~~--~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~   77 (392)
                      .+.|.++.+  +++++.  ... ......+..|+|+|++++|+++.. +.+..|.+.....+....  ........+.++
T Consensus        13 ~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~   91 (365)
T d1jofa_          13 PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDAD   91 (365)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTT
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEEC
Confidence            456766554  444432  221 224556778999999999888764 568888765432222221  112234456677


Q ss_pred             cCCCEEEEEe---CCCeEEEEEcCC------------ceee--------eecccceeEEEEeCCCCEEEEecC-CCcEEE
Q psy17243         78 SDSRRVVTSD---KAGVIAVWVADN------------AQLL--------YSALGPSKCLTVTHNMKYIVSGDG-DNSLRI  133 (392)
Q Consensus        78 ~~~~~l~~~~---~d~~i~iwd~~~------------~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~  133 (392)
                      ++++.++...   ..+.+..+.+..            ...+        +....++.++.++|+++++++++. ...|.+
T Consensus        92 ~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~  171 (365)
T d1jofa_          92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT  171 (365)
T ss_dssp             SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEE
Confidence            7777543322   234555443321            1000        011224578999999998888765 457888


Q ss_pred             EeCCCCCCCCccee--eeccccceEEEEEEcCCCEEEEee-CCCcEEEEEcCCCeEE--EE---Ee--------------
Q psy17243        134 WPTSPQTHKDDERF--TVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLA--QV---LV--------------  191 (392)
Q Consensus       134 ~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--~~---~~--------------  191 (392)
                      |+............  ..........++|+|+++++++.. .+++|.+|++...+..  ..   ..              
T Consensus       172 ~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (365)
T d1jofa_         172 HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG  251 (365)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred             EEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccc
Confidence            87653322211111  112346788999999999887666 4789999998765422  11   11              


Q ss_pred             cCCCceeEEEEecCCCcEEEEecC------CCeEEEEECCCCceeeee------cccccceeEEEEcC-CCeEEEEcC
Q psy17243        192 GHTDHVSCVAVAVTNKSLVVSGSK------DSNLIVWDMETGGEEHFL------AGHLGCVTCVKLAG-DGTVAMSDL  256 (392)
Q Consensus       192 ~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~-dg~~~~~~~  256 (392)
                      .+......+.++ +++++|+++..      .+.|..|++.....+...      .........++++| +|++++.+-
T Consensus       252 ~~~~~~~~i~~s-pdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~  328 (365)
T d1jofa_         252 KGLYRADVCALT-FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD  328 (365)
T ss_dssp             SBSEEEEEEEEC-TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred             cccCCccceEEC-CCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEe
Confidence            011234568889 56666665532      234777877654322211      12233567799998 899777653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.07  E-value=7.3e-08  Score=79.61  Aligned_cols=196  Identities=15%  Similarity=0.106  Sum_probs=138.2

Q ss_pred             ceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCcee-eeecccceeEEEEeCCCCEEEEecCCCcEEEEeCC
Q psy17243         59 SVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL-LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTS  137 (392)
Q Consensus        59 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~  137 (392)
                      +.+..+.. ...+..+++.|||+++++...++.|..++...... +........++++.++++++++...++.+..++..
T Consensus        19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            34444542 23578899999999999999999999998765533 34556678899999999999998888888888775


Q ss_pred             CCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec----------CCCceeEEEEecCCC
Q psy17243        138 PQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG----------HTDHVSCVAVAVTNK  207 (392)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~v~~~~~~~~~~  207 (392)
                      ....................+++.++++++++.+.++.+..+|...+........          .......+.+.  ++
T Consensus        98 ~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~  175 (302)
T d2p4oa1          98 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GN  175 (302)
T ss_dssp             CTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TT
T ss_pred             ccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CC
Confidence            4333322222234456678999999999888888899999999887754433221          11234556665  46


Q ss_pred             cEEEEecCCCeEEEEECCCCceeee--ecccccceeEEEEcCCCeEEEEcCC
Q psy17243        208 SLVVSGSKDSNLIVWDMETGGEEHF--LAGHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       208 ~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                      .++++.+..+.|..++.........  ..........+++.+||.+.+....
T Consensus       176 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~  227 (302)
T d2p4oa1         176 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI  227 (302)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT
T ss_pred             ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC
Confidence            6777888899999999876543321  1123345678999999998887643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=1.8e-07  Score=75.64  Aligned_cols=203  Identities=13%  Similarity=0.033  Sum_probs=120.9

Q ss_pred             eEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCC---eEEEEEcCCcee--eeecccceeEEEEeCCCCEEE
Q psy17243         49 TAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG---VIAVWVADNAQL--LYSALGPSKCLTVTHNMKYIV  123 (392)
Q Consensus        49 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~l~  123 (392)
                      .|.|.|.+ |.....+..+...+.+.+|+|||+.|+......   .+.+.+...+..  +...........++|++..++
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            57777865 444444444677889999999999998765443   466677776654  334455677889999999888


Q ss_pred             EecC-CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEe-eCCC--cEEEEEcCCCeEEEEEecCCCceeE
Q psy17243        124 SGDG-DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITG-SRDM--SLKVWQVVGGKLAQVLVGHTDHVSC  199 (392)
Q Consensus       124 ~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~  199 (392)
                      .... ++...++....  ...................+++++..++.. ..++  .|.+.++..+.. ..+.........
T Consensus        99 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~  175 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDL--ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQD  175 (269)
T ss_dssp             EEECTTSSCEEEEEET--TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEE
T ss_pred             EeeecCCccceeeccc--ccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccc
Confidence            7554 33333332221  111122222333444455677776655444 3444  455666655533 333445566777


Q ss_pred             EEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        200 VAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       200 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      ..|+|.+..++......+...+|..........+..+........|+|||+.++..
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~  231 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS  231 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEE
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEE
Confidence            88995555555555555555555443332223343455667788999999998874

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.91  E-value=3.2e-06  Score=69.95  Aligned_cols=208  Identities=9%  Similarity=0.035  Sum_probs=128.0

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeC----CCeEEEEeCCCCceeEEecc--cccceEEEEEec
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSE----DNTAKVWGLTLGSVVSTFKS--HQSTILAVAVLS   78 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~   78 (392)
                      ++.|..|+.++.+....+.........+++.++|+++++...    .+.+...+............  .......+++.+
T Consensus        60 ~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~  139 (319)
T d2dg1a1          60 EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS  139 (319)
T ss_dssp             TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT
T ss_pred             CCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe
Confidence            344555555444444444445566789999999987776533    23455555555544433321  123478899999


Q ss_pred             CCCEEEEEeC------CCeEEEEEcCCcee--eeecccceeEEEEeCCCCEEEEe-cCCCcEEEEeCCCCCCCCcce---
Q psy17243         79 DSRRVVTSDK------AGVIAVWVADNAQL--LYSALGPSKCLTVTHNMKYIVSG-DGDNSLRIWPTSPQTHKDDER---  146 (392)
Q Consensus        79 ~~~~l~~~~~------d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~---  146 (392)
                      +|++.++...      .+.+..++.+....  +..-....+.++|+++++.|+++ +..+.|..|++..........   
T Consensus       140 ~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~  219 (319)
T d2dg1a1         140 KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT  219 (319)
T ss_dssp             TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE
T ss_pred             ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccce
Confidence            9986665432      23355555544332  22222345679999999876555 567899999986432221111   


Q ss_pred             --eeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe------cCCCceeEEEEecCCCcEEEEe
Q psy17243        147 --FTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV------GHTDHVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       147 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~  213 (392)
                        ...........+++.++|++.++....+.|.+||. +++.+..+.      ++...+++++|.+....++++.
T Consensus       220 ~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         220 IPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             eeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence              11112233567999999998888888999999995 688877764      2344678999985444455543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.91  E-value=4e-06  Score=67.96  Aligned_cols=192  Identities=17%  Similarity=0.218  Sum_probs=129.4

Q ss_pred             eEEEecCC-CCeEEE-EeCCCeEEEEeCCCCceeEEec-ccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeec
Q psy17243         30 SCVAISPN-SIFAVS-GSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA  106 (392)
Q Consensus        30 ~~~~~~~~-~~~l~~-~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  106 (392)
                      ..+++.++ +.++++ .+.++.|..++. .++....+. ........+++.+++..+++....+.+.+++... +.+...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~  150 (279)
T d1q7fa_          73 NRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKF  150 (279)
T ss_dssp             EEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEE
T ss_pred             ccccccccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecc
Confidence            44555554 334443 345567777774 566665553 2345578899999999888888888888888654 333332


Q ss_pred             -----ccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCccee-eeccccceEEEEEEcCCCEEEEeeC-CCcEEEE
Q psy17243        107 -----LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERF-TVSHSEEITCFTVTWDSQYLITGSR-DMSLKVW  179 (392)
Q Consensus       107 -----~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~  179 (392)
                           ......+++.++++.+++....+.|++||....   ....+ ..+.......+++.++++++++-.. ++.|.+|
T Consensus       151 g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~---~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f  227 (279)
T d1q7fa_         151 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF  227 (279)
T ss_dssp             ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             cccccccccceeeeccceeEEeeeccccceeeeecCCc---eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEE
Confidence                 234567889999998888888999999997532   11111 1123445788999999997776543 4579999


Q ss_pred             EcCCCeEEEEEecC--CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCce
Q psy17243        180 QVVGGKLAQVLVGH--TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGE  229 (392)
Q Consensus       180 d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  229 (392)
                      + .+++.+..+...  ......+++. +++.++++ +.++.|++|...+..+
T Consensus       228 ~-~~G~~~~~~~~~~~~~~p~~vav~-~dG~l~V~-~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         228 T-QDGQLISALESKVKHAQCFDVALM-DDGSVVLA-SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             C-TTSCEEEEEEESSCCSCEEEEEEE-TTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             C-CCCCEEEEEeCCCCCCCEeEEEEe-CCCcEEEE-eCCCeEEEEEeeeecC
Confidence            8 567777666432  2357889998 56766554 5789999999876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.89  E-value=5.7e-06  Score=67.51  Aligned_cols=205  Identities=8%  Similarity=-0.006  Sum_probs=134.9

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecc----cccceEEEEEecCC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS----HQSTILAVAVLSDS   80 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~   80 (392)
                      .+.|..||.++++.. .+. ....+.++++.+++.++++ +.+ .+.++|.++++.......    ....++.+.+.|+|
T Consensus        39 ~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G  114 (295)
T d2ghsa1          39 ERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG  114 (295)
T ss_dssp             GTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred             CCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCC
Confidence            456777777766532 332 3567889999999876665 444 588999998876443321    12358899999999


Q ss_pred             CEEEEEeC----CCeEEEEEcCCceeeeec--ccceeEEEEeCCCCEEEEe-cCCCcEEEEeCCCCCCC--Ccceee---
Q psy17243         81 RRVVTSDK----AGVIAVWVADNAQLLYSA--LGPSKCLTVTHNMKYIVSG-DGDNSLRIWPTSPQTHK--DDERFT---  148 (392)
Q Consensus        81 ~~l~~~~~----d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~--~~~~~~---  148 (392)
                      +..++...    .+.-.+|.+..++.....  ....+.++++++++.++.+ +..+.|..|++......  ......   
T Consensus       115 ~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~  194 (295)
T d2ghsa1         115 ALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS  194 (295)
T ss_dssp             CEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred             CEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEecc
Confidence            87766532    234566666666543322  2345789999999866555 55788998987533221  111111   


Q ss_pred             eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCC-CcEEEEec
Q psy17243        149 VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTN-KSLVVSGS  214 (392)
Q Consensus       149 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~  214 (392)
                      .........+++..+|++.++.-..+.|..||. +++.+..+.--...+++++|--++ ..+++|..
T Consensus       195 ~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         195 TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            123455778899999987777767889999995 688888887555678999997444 44555544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.72  E-value=3.5e-05  Score=62.65  Aligned_cols=213  Identities=10%  Similarity=-0.030  Sum_probs=138.6

Q ss_pred             EEEecC-CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeee--cc
Q psy17243         31 CVAISP-NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYS--AL  107 (392)
Q Consensus        31 ~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~  107 (392)
                      +..|.+ ++.+..+--..+.|.-||.++++.. .+. ....+.++++.+++.++++ +.+ .+..+|..+++....  ..
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            566887 4555555456789999999887653 333 3567889999998866654 454 588999998865332  11


Q ss_pred             -----cceeEEEEeCCCCEEEEecC----CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEe-eCCCcEE
Q psy17243        108 -----GPSKCLTVTHNMKYIVSGDG----DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITG-SRDMSLK  177 (392)
Q Consensus       108 -----~~~~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~  177 (392)
                           ...+.+.+.++|++.++...    .+.-.+|.+..+.    .......-...+.++|+++++.++.. +..+.|.
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~----~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK----VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE----EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc----EEEEeeccCCcceeeecCCCceEEEeecccceee
Confidence                 13567888999986665432    2234455543221    11111223445788999999866554 4578898


Q ss_pred             EEEcCCC------eE--EEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEc-CC
Q psy17243        178 VWQVVGG------KL--AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLA-GD  248 (392)
Q Consensus       178 i~d~~~~------~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~d  248 (392)
                      .|++...      +.  ...+.+.......+++. .++++.++.-..+.|..||. +++.+..+......+++++|- +|
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d  251 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD  251 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEc-CCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCC
Confidence            8887421      11  11222334557788888 67777777767889999995 688888887666679999996 56


Q ss_pred             CeEEE
Q psy17243        249 GTVAM  253 (392)
Q Consensus       249 g~~~~  253 (392)
                      .+.|.
T Consensus       252 ~~~Ly  256 (295)
T d2ghsa1         252 ASRLL  256 (295)
T ss_dssp             SCEEE
T ss_pred             CCEEE
Confidence            55443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.64  E-value=1.1e-05  Score=65.03  Aligned_cols=218  Identities=9%  Similarity=0.023  Sum_probs=120.7

Q ss_pred             cCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeC-C-----CeEEEEeCCCCceeEEecc------cccce
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSE-D-----NTAKVWGLTLGSVVSTFKS------HQSTI   71 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d-----g~v~iwd~~~~~~~~~~~~------~~~~v   71 (392)
                      .+|.|.+.|+.+++. +.|..+...+...+|||||++||.... +     ..|.+++..+++.......      .....
T Consensus        19 ~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~   97 (281)
T d1k32a2          19 CCDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFT   97 (281)
T ss_dssp             ETTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECS
T ss_pred             eCCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccc
Confidence            356788889987775 466667788999999999999886532 2     2477788777765543221      12345


Q ss_pred             EEEEEecCCCEEEEEeCC------CeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEecCCCc-----------EEEE
Q psy17243         72 LAVAVLSDSRRVVTSDKA------GVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNS-----------LRIW  134 (392)
Q Consensus        72 ~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-----------i~~~  134 (392)
                      ....|+|+++.|+.....      ..+...+...+................+.+..++.......           ....
T Consensus        98 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (281)
T d1k32a2          98 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWI  177 (281)
T ss_dssp             EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred             cccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeee
Confidence            678899999998876432      23556666666555444444444444444444443332211           0111


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC--CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEE
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR--DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  212 (392)
                      ...    ..................+.++. .+.....  ...|.++|+.+++.. .+..+. ......|+|++..++++
T Consensus       178 ~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~-~~~~~~~SpDG~~I~f~  250 (281)
T d1k32a2         178 EVN----SGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR-KHTSFT-DYYPRHLNTDGRRILFS  250 (281)
T ss_dssp             EEE----TTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE-ECCCCC-SSCEEEEEESSSCEEEE
T ss_pred             ecc----ccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceE-EeecCC-CcccccCcCCCCEEEEE
Confidence            100    00111111223333444455442 2333322  346788888766543 333222 22234578655555543


Q ss_pred             ecCCCeEEEEECCCCceee
Q psy17243        213 GSKDSNLIVWDMETGGEEH  231 (392)
Q Consensus       213 ~~~dg~i~iwd~~~~~~~~  231 (392)
                        .++.|+++|+.+++...
T Consensus       251 --~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         251 --KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             --ETTEEEEECTTTCCEEE
T ss_pred             --eCCEEEEEECCCCCEEE
Confidence              36789999998887543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.42  E-value=4.6e-05  Score=61.26  Aligned_cols=210  Identities=12%  Similarity=0.067  Sum_probs=113.8

Q ss_pred             EecCC--CCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeC-C-----CeEEEEEcCCceeee
Q psy17243         33 AISPN--SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK-A-----GVIAVWVADNAQLLY  104 (392)
Q Consensus        33 ~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~  104 (392)
                      ..+|+  |+.++-.+ +|.|.+.|+..++.. .+..+.+.+...+|+|||+.|+.... +     ..|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  88887664 567888899988764 45557778899999999999886532 2     247777888876644


Q ss_pred             eccc---------ceeEEEEeCCCCEEEEecCC------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEE
Q psy17243        105 SALG---------PSKCLTVTHNMKYIVSGDGD------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLIT  169 (392)
Q Consensus       105 ~~~~---------~~~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  169 (392)
                      ....         ......|+|+++.++.....      ..+...+....   .   .............+.+.+..++.
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~  156 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI---N---FVPLNLGPATHILFADGRRVIGR  156 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT---E---EEECCSCSCSEEEEETTEEEEEE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc---e---eEEecCCccceeeecCCCeEEEe
Confidence            2211         23567899999988875432      12333333211   1   11112222223333333333333


Q ss_pred             eeCCC-----------cEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecC--CCeEEEEECCCCceeeeeccc
Q psy17243        170 GSRDM-----------SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK--DSNLIVWDMETGGEEHFLAGH  236 (392)
Q Consensus       170 ~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~  236 (392)
                      .....           ............... ...........++ . ..++.....  ...|.++|+.+++... +..+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~  232 (281)
T d1k32a2         157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIV-G-HRIYFITDIDGFGQIYSTDLDGKDLRK-HTSF  232 (281)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEE-T-TEEEEEECTTSSCEEEEEETTSCSCEE-CCCC
T ss_pred             eccccceeeeeccCCcceeeeeccccceeec-cCCccccceeeee-c-cccceecccccccceEEEeCCCCceEE-eecC
Confidence            32211           122222222222222 2233344445555 2 334444433  3457788887665443 3222


Q ss_pred             ccceeEEEEcCCCeEEEEc
Q psy17243        237 LGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       237 ~~~v~~~~~~~dg~~~~~~  255 (392)
                      . ......|+|||+.+++.
T Consensus       233 ~-~~~~~~~SpDG~~I~f~  250 (281)
T d1k32a2         233 T-DYYPRHLNTDGRRILFS  250 (281)
T ss_dssp             C-SSCEEEEEESSSCEEEE
T ss_pred             C-CcccccCcCCCCEEEEE
Confidence            2 22234689999988874

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.39  E-value=0.00019  Score=59.69  Aligned_cols=254  Identities=11%  Similarity=0.034  Sum_probs=155.7

Q ss_pred             CCccCCeEEEEECCCccceeeeccC---------------------------------------CcCe--eEEEecC---
Q psy17243          1 MGGMDCLVNVWQMNSHELQSTMEGH---------------------------------------LNTV--SCVAISP---   36 (392)
Q Consensus         1 tg~~dg~i~vwd~~~~~~~~~~~~h---------------------------------------~~~v--~~~~~~~---   36 (392)
                      +|+..|.|+|+-+.+++.++.+.-.                                       .+..  ..+.+..   
T Consensus        18 SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdGty   97 (459)
T d1fwxa2          18 SSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEGKY   97 (459)
T ss_dssp             CCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETTEE
T ss_pred             eCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCCcc
Confidence            6899999999999888776654100                                       0011  1344433   


Q ss_pred             CCCeEEEEe-CCCeEEEEeCCCCceeEEecc-cccceEEEEEe--cCCCEEEEEeCCC------------------eEEE
Q psy17243         37 NSIFAVSGS-EDNTAKVWGLTLGSVVSTFKS-HQSTILAVAVL--SDSRRVVTSDKAG------------------VIAV   94 (392)
Q Consensus        37 ~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~d~------------------~i~i   94 (392)
                      ||++|+... .++.|.+-|+++.+..+.+.. ....+..+...  |+..+++..+...                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            678877665 678999999999988664432 33456666664  4556777776633                  3667


Q ss_pred             EEcCCceeeeecc--cceeEEEEeCCCCEEEEecCC--------------------------------------CcEEEE
Q psy17243         95 WVADNAQLLYSAL--GPSKCLTVTHNMKYIVSGDGD--------------------------------------NSLRIW  134 (392)
Q Consensus        95 wd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d--------------------------------------~~i~~~  134 (392)
                      +|.++.+......  +....+.++++|+++++.+.+                                      +.+.+.
T Consensus       178 ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV  257 (459)
T d1fwxa2         178 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  257 (459)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             EecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence            8888887765543  345578999999999887643                                      123344


Q ss_pred             eCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeC-CCcEEEEEcCCCe-----------EEEEEecCCCceeEEEE
Q psy17243        135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVGGK-----------LAQVLVGHTDHVSCVAV  202 (392)
Q Consensus       135 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~-----------~~~~~~~~~~~v~~~~~  202 (392)
                      |.+...... ......-......+.++|||+++++++. +.++.++|++.-.           .+..-....-.....+|
T Consensus       258 D~~~~~~~~-v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f  336 (459)
T d1fwxa2         258 DGRKEASSL-FTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF  336 (459)
T ss_dssp             ECSGG--CS-SEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE
T ss_pred             cccccCCcc-eeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc
Confidence            433211111 1111223344567889999999887764 8899999996421           11111111223345578


Q ss_pred             ecCCCcEEEEecCCCeEEEEECCCC----------ceeeeeccccc-----ceeEEEEcCCCeEEEEcC
Q psy17243        203 AVTNKSLVVSGSKDSNLIVWDMETG----------GEEHFLAGHLG-----CVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       203 ~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~-----~v~~~~~~~dg~~~~~~~  256 (392)
                      . ..++...+---|..|.-|++...          ..+..+..|-+     ....-...|||+++++.-
T Consensus       337 d-~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         337 D-GRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             C-TTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             C-CCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            7 56666666678999999998532          33344433322     111223468999999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=0.0015  Score=51.66  Aligned_cols=237  Identities=11%  Similarity=0.022  Sum_probs=147.7

Q ss_pred             CCeEEEEECCCccce-----eeeccCCcCeeEEEecCCCCeEEEE-eCCCeEEEEeCCCCceeEEecccccceEEEEEec
Q psy17243          5 DCLVNVWQMNSHELQ-----STMEGHLNTVSCVAISPNSIFAVSG-SEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS   78 (392)
Q Consensus         5 dg~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~   78 (392)
                      .+.|+-.+++.....     ..+..+...+.+++|.+..+.|+-+ ..++.|+..+++.+.....+......+..+++..
T Consensus         9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~   88 (263)
T d1npea_           9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH   88 (263)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET
T ss_pred             CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEec
Confidence            345666665433211     2233455568889999876666554 5568898888876655544544445688999987


Q ss_pred             CCCEEEEE-eCCCeEEEEEcCCcee--eee-cccceeEEEEeCCCCEEEEecCC---CcEEEEeCCCCCCCCcceeeecc
Q psy17243         79 DSRRVVTS-DKAGVIAVWVADNAQL--LYS-ALGPSKCLTVTHNMKYIVSGDGD---NSLRIWPTSPQTHKDDERFTVSH  151 (392)
Q Consensus        79 ~~~~l~~~-~~d~~i~iwd~~~~~~--~~~-~~~~~~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~  151 (392)
                      -+..|..+ ...+.|.+.++.....  +.. .......++++|...+++.....   ..|...++...   .........
T Consensus        89 ~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~---~~~~i~~~~  165 (263)
T d1npea_          89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---NRRILAQDN  165 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---CCEEEECTT
T ss_pred             cCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC---Cceeeeeec
Confidence            66666655 4567999999876643  222 22456789999977777655432   23544555422   222222233


Q ss_pred             ccceEEEEEEcCCCEEEEe-eCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        152 SEEITCFTVTWDSQYLITG-SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       152 ~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      -.....+++.+.++.|+.. ...+.|...|+........+.+.. ....+++.  ++.+.++-...+.|...|..+++.+
T Consensus       166 ~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccc
Confidence            3566889999887777665 456789999987555444444433 34577776  5666677667889999999988877


Q ss_pred             eeeccc-ccceeEEEEcC
Q psy17243        231 HFLAGH-LGCVTCVKLAG  247 (392)
Q Consensus       231 ~~~~~~-~~~v~~~~~~~  247 (392)
                      ..+..+ ......+...+
T Consensus       243 ~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         243 DTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEECCSSCCCCCCEEEEC
T ss_pred             eEECCCCCCCcceEEEeC
Confidence            655422 23344444433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.05  E-value=0.0012  Score=58.59  Aligned_cols=247  Identities=12%  Similarity=-0.019  Sum_probs=139.7

Q ss_pred             CccCCeEEEEECCCccceeeeccCC----cCeeEEEecCCCCeEEEEe------CCCeEEEEeCCCCceeEEecccc---
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHL----NTVSCVAISPNSIFAVSGS------EDNTAKVWGLTLGSVVSTFKSHQ---   68 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~---   68 (392)
                      ++.||.+.-.|.+++++.....-..    ..++.--.-.++. ++.+.      ..|.|.-+|..+|+.+-++....   
T Consensus       121 ~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~  199 (571)
T d2ad6a1         121 KQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDD  199 (571)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHH
T ss_pred             EeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCe-EEEeeccccccccCcEEEEECCCCcEEEEEeccCCcc
Confidence            4567888889999998876653211    1111111111333 44443      36889999999999887654211   


Q ss_pred             ----------------------------------cce-EEEEEecCCCEEEEEeC----------------CCeEEEEEc
Q psy17243         69 ----------------------------------STI-LAVAVLSDSRRVVTSDK----------------AGVIAVWVA   97 (392)
Q Consensus        69 ----------------------------------~~v-~~~~~~~~~~~l~~~~~----------------d~~i~iwd~   97 (392)
                                                        ..+ ....+.++...++.+..                ...+...|.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~  279 (571)
T d2ad6a1         200 SVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDL  279 (571)
T ss_dssp             HHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEET
T ss_pred             cccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeec
Confidence                                              111 23456666666665544                345778899


Q ss_pred             CCceeeeeccc------------ceeEEEEeCCCC---EEEEecCCCcEEEEeCCCCCCCCcceee--------------
Q psy17243         98 DNAQLLYSALG------------PSKCLTVTHNMK---YIVSGDGDNSLRIWPTSPQTHKDDERFT--------------  148 (392)
Q Consensus        98 ~~~~~~~~~~~------------~~~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------------  148 (392)
                      ++++.+..++.            +.....+..+++   .++..+.+|.+.++|..+++........              
T Consensus       280 ~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~  359 (571)
T d2ad6a1         280 DTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTG  359 (571)
T ss_dssp             TTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTC
T ss_pred             cchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccccccccc
Confidence            99987754432            111122223443   4667788899988887765421100000              


Q ss_pred             --------------------ecc--ccceEEEEEEcCCCEEEEeeCC---------------------------------
Q psy17243        149 --------------------VSH--SEEITCFTVTWDSQYLITGSRD---------------------------------  173 (392)
Q Consensus       149 --------------------~~~--~~~v~~~~~~~~~~~l~~~~~d---------------------------------  173 (392)
                                          ...  ...-...+++|+..++++...+                                 
T Consensus       360 ~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (571)
T d2ad6a1         360 TPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPT  439 (571)
T ss_dssp             SEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTT
T ss_pred             ccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcc
Confidence                                000  0000124667766666553322                                 


Q ss_pred             ----CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccc-ceeEEEEcCC
Q psy17243        174 ----MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG-CVTCVKLAGD  248 (392)
Q Consensus       174 ----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~d  248 (392)
                          |.|.-+|+.+++.+-+...- .+..+-... ..+.+++.|+.||.++-+|.++|+.+-++..... .-.-+.+..|
T Consensus       440 ~~~~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~-TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~d  517 (571)
T d2ad6a1         440 KKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLY-TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFK  517 (571)
T ss_dssp             SCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             cCCcccEEEeccCCCceeeEcCCC-CCCCcceeE-ecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEEC
Confidence                45777888888877665422 111111122 2355777899999999999999999987753222 1122555567


Q ss_pred             CeE
Q psy17243        249 GTV  251 (392)
Q Consensus       249 g~~  251 (392)
                      |+.
T Consensus       518 Gkq  520 (571)
T d2ad6a1         518 GKQ  520 (571)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            774

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.0032  Score=49.77  Aligned_cols=226  Identities=13%  Similarity=0.033  Sum_probs=139.5

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEE-eCCCeEEEEeCCCCc----eeEEecccccceEEEEEecC
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSG-SEDNTAKVWGLTLGS----VVSTFKSHQSTILAVAVLSD   79 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~   79 (392)
                      ...|+..++.+.+....+. ....+.+++|.+..+.|+-. ...+.|.--+++...    ....+......+..+++.+.
T Consensus         9 ~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~   87 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (266)
T ss_dssp             BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeec
Confidence            3458888887655444443 55667899999877766654 355667766664321    11222223345678888876


Q ss_pred             CCEEEEE-eCCCeEEEEEcCCceeee---ecccceeEEEEeCCCCEEEEec--CCCcEEEEeCCCCCCCCcceeeecccc
Q psy17243         80 SRRVVTS-DKAGVIAVWVADNAQLLY---SALGPSKCLTVTHNMKYIVSGD--GDNSLRIWPTSPQTHKDDERFTVSHSE  153 (392)
Q Consensus        80 ~~~l~~~-~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~  153 (392)
                      +..|..+ ...+.|.+.++.......   ........++++|...+++...  ..+.|...++...   .........-.
T Consensus        88 ~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~~l~~~~~~  164 (266)
T d1ijqa1          88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTENIQ  164 (266)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECSSCS
T ss_pred             cceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---ceecccccccc
Confidence            6666655 455789999988765432   2234567889998766666544  3446766666522   22222223335


Q ss_pred             ceEEEEEEcCCCEEEEe-eCCCcEEEEEcCCCeEEEEEecC--CCceeEEEEecCCCcEEEEecCCCeEEEEECCCCcee
Q psy17243        154 EITCFTVTWDSQYLITG-SRDMSLKVWQVVGGKLAQVLVGH--TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE  230 (392)
Q Consensus       154 ~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  230 (392)
                      ....+++.+.++.|+.+ ...+.|...++............  ......+++.  ++.++++-..++.|...+..+++..
T Consensus       165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  242 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             eeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcce
Confidence            67889999887766665 45678998898654433333222  2345567776  5667777667888988888888766


Q ss_pred             eeeccc
Q psy17243        231 HFLAGH  236 (392)
Q Consensus       231 ~~~~~~  236 (392)
                      ..+...
T Consensus       243 ~~~~~~  248 (266)
T d1ijqa1         243 NLLAEN  248 (266)
T ss_dssp             EEEECS
T ss_pred             EEEEcC
Confidence            655543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.81  E-value=0.0089  Score=53.15  Aligned_cols=247  Identities=14%  Similarity=0.037  Sum_probs=139.3

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCe-eEEEecC--CCCeEEEEeC------CCeEEEEeCCCCceeEEecccc----
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTV-SCVAISP--NSIFAVSGSE------DNTAKVWGLTLGSVVSTFKSHQ----   68 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~----   68 (392)
                      ++.|+.|.-.|.++++++..+....... ..+.-.|  -+..++.+..      .|.|+-+|.++|+++-++....    
T Consensus       127 ~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~  206 (596)
T d1w6sa_         127 TQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKD  206 (596)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHH
T ss_pred             EeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccc
Confidence            4568888889999999888774321111 1111122  1234555532      4899999999999987653210    


Q ss_pred             ---------------------------------c-ceEEEEEecCCCEEEEEeCC----------------CeEEEEEcC
Q psy17243         69 ---------------------------------S-TILAVAVLSDSRRVVTSDKA----------------GVIAVWVAD   98 (392)
Q Consensus        69 ---------------------------------~-~v~~~~~~~~~~~l~~~~~d----------------~~i~iwd~~   98 (392)
                                                       . .-..+.+.+....++.+..+                ..+...|++
T Consensus       207 ~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~  286 (596)
T d1w6sa_         207 LLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD  286 (596)
T ss_dssp             HTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccc
Confidence                                             0 11234566666666665432                347788999


Q ss_pred             Cceeeeeccc------------ceeEEE-EeCCC---CEEEEecCCCcEEEEeCCCCCCCCcceee--------------
Q psy17243         99 NAQLLYSALG------------PSKCLT-VTHNM---KYIVSGDGDNSLRIWPTSPQTHKDDERFT--------------  148 (392)
Q Consensus        99 ~~~~~~~~~~------------~~~~~~-~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------------  148 (392)
                      +++.+..++.            ....+. ...++   +.++....+|.+.++|..+++........              
T Consensus       287 TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~  366 (596)
T d1w6sa_         287 TGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTG  366 (596)
T ss_dssp             TCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTC
T ss_pred             cccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccccccccccc
Confidence            9988764432            111111 12233   35777888899999888765422110000              


Q ss_pred             ----e-----ccc-------------cceEEEEEEcCCCEEEEeeC----------------------------------
Q psy17243        149 ----V-----SHS-------------EEITCFTVTWDSQYLITGSR----------------------------------  172 (392)
Q Consensus       149 ----~-----~~~-------------~~v~~~~~~~~~~~l~~~~~----------------------------------  172 (392)
                          .     ...             ..-...+++|+..+++....                                  
T Consensus       367 ~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~  446 (596)
T d1w6sa_         367 QPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDR  446 (596)
T ss_dssp             CEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBT
T ss_pred             ccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCc
Confidence                0     000             00012355665555544321                                  


Q ss_pred             -----CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeeccccc-ceeEEEEc
Q psy17243        173 -----DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG-CVTCVKLA  246 (392)
Q Consensus       173 -----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~  246 (392)
                           -|.|.-||+.+++.+-+.. +..+...-.++ ..+.+++.|+.||.++.+|.++|+.+.++..... .-.=+.+.
T Consensus       447 ~~~~~~G~l~A~D~~TG~~~W~~~-~~~~~~gg~ls-TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~  524 (596)
T d1w6sa_         447 QNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMA-TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYT  524 (596)
T ss_dssp             TTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             ccCCCcceEEEEeCCCCceecccC-CCCCCccceeE-ecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEE
Confidence                 1467788888888765543 22222222223 2456777899999999999999999987753322 11123344


Q ss_pred             CCCe
Q psy17243        247 GDGT  250 (392)
Q Consensus       247 ~dg~  250 (392)
                      .||+
T Consensus       525 ~dGk  528 (596)
T d1w6sa_         525 HKGT  528 (596)
T ss_dssp             ETTE
T ss_pred             ECCE
Confidence            5776

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.80  E-value=0.0051  Score=54.35  Aligned_cols=249  Identities=11%  Similarity=0.105  Sum_probs=141.9

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcC-eeEEEecC---CCCeEEEEeC------CCeEEEEeCCCCceeEEeccc----
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNT-VSCVAISP---NSIFAVSGSE------DNTAKVWGLTLGSVVSTFKSH----   67 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~---~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~----   67 (392)
                      ++.|+.|.-.|..+++++.....+... -..+.-.|   ++ .++.+..      .|.|.-+|.++|+.+-++..-    
T Consensus       123 ~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~  201 (560)
T d1kv9a2         123 GTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDP  201 (560)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred             EeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeeeccccc
Confidence            356788888899999988776532211 11111112   23 3444322      367999999999988766421    


Q ss_pred             --------------------------ccce-EEEEEecCCCEEEEEeC-------------------CCeEEEEEcCCce
Q psy17243         68 --------------------------QSTI-LAVAVLSDSRRVVTSDK-------------------AGVIAVWVADNAQ  101 (392)
Q Consensus        68 --------------------------~~~v-~~~~~~~~~~~l~~~~~-------------------d~~i~iwd~~~~~  101 (392)
                                                ...+ ..+.+.+....++.+..                   ...|.-.|+++++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~  281 (560)
T d1kv9a2         202 ALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK  281 (560)
T ss_dssp             TSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred             cCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccc
Confidence                                      0111 22456666666654421                   2357777888888


Q ss_pred             eeeeccc------------ceeEEEEeCCC---CEEEEecCCCcEEEEeCCCCCCCCcceeee-----------------
Q psy17243        102 LLYSALG------------PSKCLTVTHNM---KYIVSGDGDNSLRIWPTSPQTHKDDERFTV-----------------  149 (392)
Q Consensus       102 ~~~~~~~------------~~~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----------------  149 (392)
                      ....++.            ...-..+..++   ..++.+..+|.+.++|..+++.........                 
T Consensus       282 ~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~  361 (560)
T d1kv9a2         282 LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEA  361 (560)
T ss_dssp             EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEEC
T ss_pred             eeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhcccccc
Confidence            7654321            11112222233   356778889999999987654321110000                 


Q ss_pred             --------------c--cccceEEEEEEcCCCEEEEeeC------------------------------------CCcEE
Q psy17243        150 --------------S--HSEEITCFTVTWDSQYLITGSR------------------------------------DMSLK  177 (392)
Q Consensus       150 --------------~--~~~~v~~~~~~~~~~~l~~~~~------------------------------------dg~i~  177 (392)
                                    .  ....-...+++|+..+++....                                    .|.|.
T Consensus       362 ~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~  441 (560)
T d1kv9a2         362 PGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALL  441 (560)
T ss_dssp             TTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEE
T ss_pred             ccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceE
Confidence                          0  0000113456677666655332                                    25688


Q ss_pred             EEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccc-eeEEEEcCCCe-EEE
Q psy17243        178 VWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGC-VTCVKLAGDGT-VAM  253 (392)
Q Consensus       178 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~dg~-~~~  253 (392)
                      -||+.+++.+-++.. ..+...-.+. ..+.+++.|+.||.++.+|.++|+.+.++...... -.-+.+..||+ +++
T Consensus       442 A~D~~tGk~~W~~~~-~~~~~gg~l~-TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~  517 (560)
T d1kv9a2         442 AWDPVKQKAAWKVPY-PTHWNGGTLS-TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA  517 (560)
T ss_dssp             EEETTTTEEEEEEEE-SSSCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEeCCCCeEeeeccC-CCCCCCceeE-ECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            899999988877652 2222222223 34667788999999999999999999877643221 11245556776 444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.61  E-value=0.011  Score=52.31  Aligned_cols=247  Identities=12%  Similarity=0.083  Sum_probs=136.3

Q ss_pred             CccCCeEEEEECCCccceeeecc--CCcCeeEEEecC--CCCeEEEEeC------CCeEEEEeCCCCceeEEecccc---
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEG--HLNTVSCVAISP--NSIFAVSGSE------DNTAKVWGLTLGSVVSTFKSHQ---   68 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~---   68 (392)
                      ++.|+.+.-.|.++++++.....  +...-..+.-.|  -...++.++.      .|.|.-+|.++|+.+-++....   
T Consensus       134 ~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~  213 (573)
T d1kb0a2         134 GAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP  213 (573)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred             EecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccC
Confidence            35678888889999988765542  221111111111  1223444432      4789999999999887653210   


Q ss_pred             ----------------------------cce-EEEEEecCCCEEEEEeC-------------------CCeEEEEEcCCc
Q psy17243         69 ----------------------------STI-LAVAVLSDSRRVVTSDK-------------------AGVIAVWVADNA  100 (392)
Q Consensus        69 ----------------------------~~v-~~~~~~~~~~~l~~~~~-------------------d~~i~iwd~~~~  100 (392)
                                                  ..+ ....+.++...++....                   ...|...|++++
T Consensus       214 ~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG  293 (573)
T d1kb0a2         214 SKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG  293 (573)
T ss_dssp             TSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred             CCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccch
Confidence                                        111 12455566555554321                   124666777777


Q ss_pred             eeeeeccc------------ceeEEEEeCCC---CEEEEecCCCcEEEEeCCCCCCCCcceeee--------c-------
Q psy17243        101 QLLYSALG------------PSKCLTVTHNM---KYIVSGDGDNSLRIWPTSPQTHKDDERFTV--------S-------  150 (392)
Q Consensus       101 ~~~~~~~~------------~~~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--------~-------  150 (392)
                      +.....+.            +........++   ..++.++.+|.+.++|..+++.........        .       
T Consensus       294 ~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~  373 (573)
T d1kb0a2         294 KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGI  373 (573)
T ss_dssp             CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEEC
T ss_pred             heeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeee
Confidence            76543321            11122222333   357778889999999987654321111000        0       


Q ss_pred             -----------------cccceEEEEEEcCCCEEEEeeCC----------------------------------------
Q psy17243        151 -----------------HSEEITCFTVTWDSQYLITGSRD----------------------------------------  173 (392)
Q Consensus       151 -----------------~~~~v~~~~~~~~~~~l~~~~~d----------------------------------------  173 (392)
                                       ....-..++++|+..+++....+                                        
T Consensus       374 ~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~  453 (573)
T d1kb0a2         374 AAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKS  453 (573)
T ss_dssp             GGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCS
T ss_pred             eeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCC
Confidence                             00001124567766655543221                                        


Q ss_pred             ---CcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccce-eEEEEcCCC
Q psy17243        174 ---MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCV-TCVKLAGDG  249 (392)
Q Consensus       174 ---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~dg  249 (392)
                         |.|.-||+.+++.+-..+... +...-..+ ..+.++++|+.||.++.+|.++|+.+.++....... .=+.+..||
T Consensus       454 ~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~ls-tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G  531 (573)
T d1kb0a2         454 KPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLT-TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDG  531 (573)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEESS-SCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             CCcccEEEeCCCCCceEeeecCCC-CCCCceEE-EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence               357778888888877665322 22111122 246678889999999999999999998776432211 114455677


Q ss_pred             e
Q psy17243        250 T  250 (392)
Q Consensus       250 ~  250 (392)
                      +
T Consensus       532 k  532 (573)
T d1kb0a2         532 R  532 (573)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=0.015  Score=45.60  Aligned_cols=211  Identities=9%  Similarity=-0.013  Sum_probs=126.9

Q ss_pred             CeEEEEeCCCeEEEEeCCCCce-----eEEecccccceEEEEEecCCCEEEEEe-CCCeEEEEEcCCceeeeec---ccc
Q psy17243         39 IFAVSGSEDNTAKVWGLTLGSV-----VSTFKSHQSTILAVAVLSDSRRVVTSD-KAGVIAVWVADNAQLLYSA---LGP  109 (392)
Q Consensus        39 ~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~---~~~  109 (392)
                      .+|+.+. .+.|+-.+++....     ...+..+...+..++|.+..+.|+... ..+.|+..++.........   ...
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~   80 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence            3444443 34666666654321     122333455678899998888777764 4577888888765443222   245


Q ss_pred             eeEEEEeCCCCEEEEe-cCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC---CcEEEEEcCCCe
Q psy17243        110 SKCLTVTHNMKYIVSG-DGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD---MSLKVWQVVGGK  185 (392)
Q Consensus       110 ~~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~  185 (392)
                      ...+++..-+..|+.+ ...+.|.+.++.....   ..........+..+++.|...+|+.....   ..|..-++....
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~---~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~  157 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN  157 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             ccEEEEeccCCeEEEeccCCCEEEEEecCCceE---EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC
Confidence            6789998766666544 5577999999863322   12222333567899999987777655432   235444554333


Q ss_pred             EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccceeEEEEcCCCeEEEEc
Q psy17243        186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~  255 (392)
                      ........-.....+++.+.++.+.++-...+.|...+++.......+.+... ..+|++. ++.+..++
T Consensus       158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~-~~~lYwtd  225 (263)
T d1npea_         158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTD  225 (263)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEE
T ss_pred             ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE-CCEEEEEE
Confidence            33333323345678999976676767767788999999975554434443333 3467775 44555554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.016  Score=45.40  Aligned_cols=225  Identities=10%  Similarity=0.083  Sum_probs=131.6

Q ss_pred             CCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEE
Q psy17243          5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVV   84 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   84 (392)
                      ...|.|.|+.+......-   .-.--+.-.+|..+.||.=+ ..++.++|+++.+.++.+. ...+|.--.|..+. .|+
T Consensus        44 ~~~VvIidl~n~~~~~Rr---pi~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~~-~L~  117 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVA  117 (327)
T ss_dssp             EEEEEEEETTSTTSCEEE---ECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSSS-EEE
T ss_pred             CceEEEEECCCCCcceec---ccchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecCCC-EEE
Confidence            346777777654422111   11122445678888877665 5689999999999998887 45577777787544 454


Q ss_pred             EEeCCCeEEEEEcCCce-eeeecc-------cceeEEEEeCCCCEEEEecC-------CCcEEEEeCCCCCCCCcceeee
Q psy17243         85 TSDKAGVIAVWVADNAQ-LLYSAL-------GPSKCLTVTHNMKYIVSGDG-------DNSLRIWPTSPQTHKDDERFTV  149 (392)
Q Consensus        85 ~~~~d~~i~iwd~~~~~-~~~~~~-------~~~~~~~~~~~~~~l~~~~~-------d~~i~~~d~~~~~~~~~~~~~~  149 (392)
                      ..+ +..|+-|+++... +.+.+.       ..+-....+++.++++..+-       .|.+.+|..+.    .......
T Consensus       118 lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er----~~sQ~ie  192 (327)
T d1utca2         118 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----KVSQPIE  192 (327)
T ss_dssp             EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT----TEEEEEC
T ss_pred             EEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc----CcCcccc
Confidence            443 4569999996432 222111       13445566788888765431       36788998852    2222333


Q ss_pred             ccccceEEEEEEcC--C-CEEEEe---eCCCcEEEEEcCCCe--------EEEEE-e---cCCCceeEEEEecCCCcEEE
Q psy17243        150 SHSEEITCFTVTWD--S-QYLITG---SRDMSLKVWQVVGGK--------LAQVL-V---GHTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       150 ~~~~~v~~~~~~~~--~-~~l~~~---~~dg~i~i~d~~~~~--------~~~~~-~---~~~~~v~~~~~~~~~~~~l~  211 (392)
                      +|...-..+.+..+  . +.++.+   ...+.++|.++....        ....+ .   .-.+-..++..+ +.-.++.
T Consensus       193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs-~kygiiy  271 (327)
T d1utca2         193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-EKHDVVF  271 (327)
T ss_dssp             CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE-TTTTEEE
T ss_pred             ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee-ccCCEEE
Confidence            44333222222111  1 122221   234688898885421        11111 1   113345577888 5566777


Q ss_pred             EecCCCeEEEEECCCCceeeeeccccccee
Q psy17243        212 SGSKDSNLIVWDMETGGEEHFLAGHLGCVT  241 (392)
Q Consensus       212 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  241 (392)
                      .-+.-|.|++||++++.++..-+-....|.
T Consensus       272 viTK~G~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         272 LITKYGYIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEecCcEEEEEEcccccEEEEeecCCCceE
Confidence            778999999999999999876655555554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.35  E-value=0.043  Score=48.36  Aligned_cols=206  Identities=14%  Similarity=0.062  Sum_probs=117.1

Q ss_pred             cCCeEEEEECCCccceeeeccCC-------------------------------------cCe-eEEEecCCCCeEEEEe
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHL-------------------------------------NTV-SCVAISPNSIFAVSGS   45 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~-------------------------------------~~v-~~~~~~~~~~~l~~~~   45 (392)
                      .+|.|+-+|+.+|+++..+....                                     ..+ ....+.+...+++.+.
T Consensus       174 ~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~t  253 (571)
T d2ad6a1         174 VRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGS  253 (571)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             ccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeec
Confidence            36789999999999887654211                                     112 2345566555555443


Q ss_pred             C----------------CCeEEEEeCCCCceeEEeccccc---------ceEEEEEecCCC---EEEEEeCCCeEEEEEc
Q psy17243         46 E----------------DNTAKVWGLTLGSVVSTFKSHQS---------TILAVAVLSDSR---RVVTSDKAGVIAVWVA   97 (392)
Q Consensus        46 ~----------------dg~v~iwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~---~l~~~~~d~~i~iwd~   97 (392)
                      .                ...+.-.|.++|+.+-.++....         .........+++   .++..+.+|.++++|.
T Consensus       254 g~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr  333 (571)
T d2ad6a1         254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNR  333 (571)
T ss_dssp             CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred             ccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEec
Confidence            3                34677889999998877764221         112222333443   4677889999999999


Q ss_pred             CCceeeeeccc----------------ce--------------------------eEEEEeCCCCEEEEecCC-------
Q psy17243         98 DNAQLLYSALG----------------PS--------------------------KCLTVTHNMKYIVSGDGD-------  128 (392)
Q Consensus        98 ~~~~~~~~~~~----------------~~--------------------------~~~~~~~~~~~l~~~~~d-------  128 (392)
                      ++++.+.....                ++                          ...+++|+...+++...+       
T Consensus       334 ~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~  413 (571)
T d2ad6a1         334 ENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEP  413 (571)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEecccccccccc
Confidence            99987632110                00                          124566766666654433       


Q ss_pred             ------------------------------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEE
Q psy17243        129 ------------------------------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV  178 (392)
Q Consensus       129 ------------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  178 (392)
                                                    |.|.-+|+.+++..-...    ...+..+-.+.-.+.++++++.||.++.
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~----~~~~~~~g~l~TagglVf~G~~dg~l~A  489 (571)
T d2ad6a1         414 FMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW----EKFAAWGGTLYTKGGLVWYATLDGYLKA  489 (571)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE----ESSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             ccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcC----CCCCCCcceeEecCCEEEEECCCCeEEE
Confidence                                          234444444332211111    1111111112224668889999999999


Q ss_pred             EEcCCCeEEEEEecCCC-ceeEEEEecCCCcEEEEe
Q psy17243        179 WQVVGGKLAQVLVGHTD-HVSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       179 ~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~  213 (392)
                      +|.++++.+-++.-... .-.-+.|...+.++++..
T Consensus       490 ~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         490 LDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EECCCCcEEEEEECCCCceecceEEEECCEEEEEEE
Confidence            99999999988753211 112244443455566443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.27  E-value=0.052  Score=47.69  Aligned_cols=206  Identities=11%  Similarity=0.100  Sum_probs=115.8

Q ss_pred             cCCeEEEEECCCccceeeeccC------------------------------CcCe-eEEEecCCCCeEEEEeC------
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGH------------------------------LNTV-SCVAISPNSIFAVSGSE------   46 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h------------------------------~~~v-~~~~~~~~~~~l~~~~~------   46 (392)
                      ..|.|.-+|.++++++..+..-                              ...+ ..+.+.+...+++.+..      
T Consensus       176 ~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~  255 (560)
T d1kv9a2         176 VRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWN  255 (560)
T ss_dssp             CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             ccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccc
Confidence            3478999999999988876420                              1112 22455665555443221      


Q ss_pred             -------------CCeEEEEeCCCCceeEEecccccc---------eEEEEEecCCC---EEEEEeCCCeEEEEEcCCce
Q psy17243         47 -------------DNTAKVWGLTLGSVVSTFKSHQST---------ILAVAVLSDSR---RVVTSDKAGVIAVWVADNAQ  101 (392)
Q Consensus        47 -------------dg~v~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~  101 (392)
                                   ...|.-.|+++++..-.++.....         ..-+....+++   .++.+..+|.+.++|..+++
T Consensus       256 ~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~  335 (560)
T d1kv9a2         256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (560)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCc
Confidence                         245777799999887665532211         11222223443   56778899999999999998


Q ss_pred             eeeeccc-c--------------------------------------eeEEEEeCCCCEEEEecCC--------------
Q psy17243        102 LLYSALG-P--------------------------------------SKCLTVTHNMKYIVSGDGD--------------  128 (392)
Q Consensus       102 ~~~~~~~-~--------------------------------------~~~~~~~~~~~~l~~~~~d--------------  128 (392)
                      ++..... +                                      -...+++|+...+++...+              
T Consensus       336 ~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~  415 (560)
T d1kv9a2         336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT  415 (560)
T ss_dssp             EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred             ccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccccc
Confidence            7643211 0                                      0134566666666654332              


Q ss_pred             ----------------------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeE
Q psy17243        129 ----------------------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL  186 (392)
Q Consensus       129 ----------------------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  186 (392)
                                            |.|.-+|+.+++..-...    ...+...-.+.-.+.++++|+.||.++.||.++++.
T Consensus       416 ~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~----~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP----YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE----ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccCcccccCCCCcccccceEEEeCCCCeEeeecc----CCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcE
Confidence                                  334455554332221111    111111112233567888999999999999999999


Q ss_pred             EEEEecCCCc-eeEEEEecCCCcEEEEe
Q psy17243        187 AQVLVGHTDH-VSCVAVAVTNKSLVVSG  213 (392)
Q Consensus       187 ~~~~~~~~~~-v~~~~~~~~~~~~l~~~  213 (392)
                      +-++.-.... -.-+.+...+.++|+..
T Consensus       492 LW~~~l~~~~~~~P~ty~~dGkqyv~v~  519 (560)
T d1kv9a2         492 LWQFEAQSGIVAAPMTFELAGRQYVAIM  519 (560)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             eEEEECCCCccccCEEEEECCEEEEEEE
Confidence            9887642211 11234442444555543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=0.026  Score=44.21  Aligned_cols=210  Identities=7%  Similarity=0.107  Sum_probs=129.9

Q ss_pred             CeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCC-ceeEEecccc----cceEEEEEecCC
Q psy17243          6 CLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-SVVSTFKSHQ----STILAVAVLSDS   80 (392)
Q Consensus         6 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~   80 (392)
                      .++.++|+++.++++.+. ...+|.--.|-.+.. |+..+ +..|+-|+++.. .+.+.+..|.    ..|..-..+++.
T Consensus        83 ~~LQiFnletK~klks~~-~~e~VvfWkWis~~~-L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~  159 (327)
T d1utca2          83 KTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ  159 (327)
T ss_dssp             TEEEEEETTTTEEEEEEE-CSSCCCEEEESSSSE-EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTS
T ss_pred             CeEEEEehhHhhhhceEE-cCCCcEEEEecCCCE-EEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCC
Confidence            478999999999888887 455777788876654 44443 467999999543 4556665543    467777888888


Q ss_pred             CEEEEEe---C----CCeEEEEEcCCceeeeecccceeEEEE---e--CCC-CEEEEe---cCCCcEEEEeCCCCCCC-C
Q psy17243         81 RRVVTSD---K----AGVIAVWVADNAQLLYSALGPSKCLTV---T--HNM-KYIVSG---DGDNSLRIWPTSPQTHK-D  143 (392)
Q Consensus        81 ~~l~~~~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~---~--~~~-~~l~~~---~~d~~i~~~d~~~~~~~-~  143 (392)
                      +.++..+   .    .|.+.+|..+.+.. +.++++..+..-   .  +.. ..++.+   ...+++++.++...... .
T Consensus       160 kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~  238 (327)
T d1utca2         160 KWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ  238 (327)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCC
T ss_pred             CEEEEEeEecCCCceeEEEEEEEeccCcC-ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCC
Confidence            8766443   2    36788888776532 222232222211   1  111 122222   23478899988753321 1


Q ss_pred             cc--e---ee---eccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecC
Q psy17243        144 DE--R---FT---VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK  215 (392)
Q Consensus       144 ~~--~---~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  215 (392)
                      ..  +   ..   ....+-..++..++.-..++.-+.-|.|++||+.++.++..-+-..+.|...+-....+. +++...
T Consensus       239 ~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~G-i~~VNr  317 (327)
T d1utca2         239 PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG-IIGVNR  317 (327)
T ss_dssp             CCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTE-EEEEET
T ss_pred             CCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCce-EEEECC
Confidence            11  1   11   112344567888888889999999999999999999998877655666665554423333 333445


Q ss_pred             CCeEE
Q psy17243        216 DSNLI  220 (392)
Q Consensus       216 dg~i~  220 (392)
                      +|.|.
T Consensus       318 ~GqVl  322 (327)
T d1utca2         318 KGQVL  322 (327)
T ss_dssp             TSEEE
T ss_pred             CCeEE
Confidence            66654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.029  Score=44.03  Aligned_cols=210  Identities=12%  Similarity=0.095  Sum_probs=127.6

Q ss_pred             eEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEe-CCCeEEEEEcCCce------e-eeeccccee
Q psy17243         40 FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD-KAGVIAVWVADNAQ------L-LYSALGPSK  111 (392)
Q Consensus        40 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~------~-~~~~~~~~~  111 (392)
                      +|+.+.. ..|+-.++++.+....+. ....+.+++|.+..+.|+... ..+.|...++....      . +........
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~   80 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence            3444433 358888988765544444 455678999999888877765 45667766664321      1 112223456


Q ss_pred             EEEEeCCCCEEEEe-cCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee--CCCcEEEEEcCCCeEEE
Q psy17243        112 CLTVTHNMKYIVSG-DGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS--RDMSLKVWQVVGGKLAQ  188 (392)
Q Consensus       112 ~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~  188 (392)
                      .+++.+.+..|+.. ...+.|.+.++...   ...............+++.|...+|+...  ..+.|...++.......
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~---~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~  157 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  157 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCc---eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec
Confidence            78998766666655 45678999998732   22223334456678999999766666554  34567777765443333


Q ss_pred             EEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecc--cccceeEEEEcCCCeEEEEc
Q psy17243        189 VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG--HLGCVTCVKLAGDGTVAMSD  255 (392)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~dg~~~~~~  255 (392)
                      .....-...+.+++.+.++.+.++-...+.|...++...........  ......++++. ++.+..++
T Consensus       158 l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td  225 (266)
T d1ijqa1         158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTD  225 (266)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEE
T ss_pred             ccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEE
Confidence            33333356788999976777777777788999999975443333322  22345567766 34444444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.18  E-value=0.04  Score=48.72  Aligned_cols=80  Identities=23%  Similarity=0.209  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeeecccccc-eeEEEEcCCCe-
Q psy17243        173 DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGC-VTCVKLAGDGT-  250 (392)
Q Consensus       173 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~dg~-  250 (392)
                      .|.|.-+|+.+++.+-+...+. ++..-..+ ..+.++++|+.||.++.+|.++|+.+.+++..... -.-+.+..||+ 
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~ls-tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLA-TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeE-EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            3678889999999887766432 22221223 34567778999999999999999999877643221 11255667885 


Q ss_pred             EEEE
Q psy17243        251 VAMS  254 (392)
Q Consensus       251 ~~~~  254 (392)
                      +++.
T Consensus       543 Yv~i  546 (582)
T d1flga_         543 YLGV  546 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.96  E-value=0.085  Score=44.56  Aligned_cols=226  Identities=10%  Similarity=0.041  Sum_probs=121.6

Q ss_pred             CccCCeEEEEECCCccceeeeccCCcCeeEEEecCCCCeEEEEeCC----------------CeEEEEeCCCCce--eEE
Q psy17243          2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSED----------------NTAKVWGLTLGSV--VST   63 (392)
Q Consensus         2 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----------------g~v~iwd~~~~~~--~~~   63 (392)
                      |+....|++.|+.+++.+..-- .......++|.++++.|+....+                ..|..+.+.+...  ...
T Consensus       147 G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v  225 (430)
T d1qfma1         147 GSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC  225 (430)
T ss_dssp             TCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE
T ss_pred             cCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccc
Confidence            5566789999999998764321 12223578999999877654332                3577887766532  223


Q ss_pred             eccc--ccceEEEEEecCCCEEEEEeC---CCe--EEEEEcCCcee----------ee-ecccceeEEEEeCCCCEEEEe
Q psy17243         64 FKSH--QSTILAVAVLSDSRRVVTSDK---AGV--IAVWVADNAQL----------LY-SALGPSKCLTVTHNMKYIVSG  125 (392)
Q Consensus        64 ~~~~--~~~v~~~~~~~~~~~l~~~~~---d~~--i~iwd~~~~~~----------~~-~~~~~~~~~~~~~~~~~l~~~  125 (392)
                      +...  ...+..+..++++++++....   +..  +.+.|+.....          +. ...... ....+.++.+++..
T Consensus       226 ~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~T  304 (430)
T d1qfma1         226 AEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKT  304 (430)
T ss_dssp             ECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEE
T ss_pred             cccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccce-EEEecCCceeeccc
Confidence            3322  234667778899998765432   233  34445443211          10 011111 12222233333333


Q ss_pred             c---CCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEee-CC--CcEEEEEcCCCeEEEEEecCCCceeE
Q psy17243        126 D---GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS-RD--MSLKVWQVVGGKLAQVLVGHTDHVSC  199 (392)
Q Consensus       126 ~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~~~v~~  199 (392)
                      .   .++.|...++.......-..+...+...+..-.+...+.+|+... .+  ..|.++++.+++.........+.+..
T Consensus       305 n~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~  384 (430)
T d1qfma1         305 NRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVG  384 (430)
T ss_dssp             CTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEE
T ss_pred             CcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEee
Confidence            2   246777777764322211222223444454444555566666554 44  35888999888766555444455555


Q ss_pred             EEEecCCCcEEEEec---CCCeEEEEECCCCce
Q psy17243        200 VAVAVTNKSLVVSGS---KDSNLIVWDMETGGE  229 (392)
Q Consensus       200 ~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~  229 (392)
                      +...+....+.++-+   .=.++.-+|+.+++.
T Consensus       385 ~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         385 YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             ccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            544433444444332   236788899988754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.93  E-value=0.079  Score=43.78  Aligned_cols=230  Identities=9%  Similarity=0.043  Sum_probs=127.1

Q ss_pred             CeeEEEecCCCCeEEEEeCC-----C------eEEEEeCCCCceeE--Ee-cccccceEEEEEecCCCEEEEEeCC-CeE
Q psy17243         28 TVSCVAISPNSIFAVSGSED-----N------TAKVWGLTLGSVVS--TF-KSHQSTILAVAVLSDSRRVVTSDKA-GVI   92 (392)
Q Consensus        28 ~v~~~~~~~~~~~l~~~~~d-----g------~v~iwd~~~~~~~~--~~-~~~~~~v~~~~~~~~~~~l~~~~~d-~~i   92 (392)
                      ++.......+++.++.|+.+     +      .+.+||..+++-..  .. ..+.......++.++++.++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            34444455688888887743     1      37799998875432  12 1233334566788999998888765 589


Q ss_pred             EEEEcCCceeeeeccc----ceeEEEEeCCCCEEEEecCC------CcEEEEeCCCCCCCCcce------eeeccc----
Q psy17243         93 AVWVADNAQLLYSALG----PSKCLTVTHNMKYIVSGDGD------NSLRIWPTSPQTHKDDER------FTVSHS----  152 (392)
Q Consensus        93 ~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~------~~~~~~----  152 (392)
                      .+||..+..-......    .....+..++++.++.++.+      ..+.+||..+........      ....+.    
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence            9999988765432221    12356777899999988753      468899987543211000      000000    


Q ss_pred             -cceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEe--c----CC--CceeEEEEecCCCcEEEEecCCC------
Q psy17243        153 -EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV--G----HT--DHVSCVAVAVTNKSLVVSGSKDS------  217 (392)
Q Consensus       153 -~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~----~~--~~v~~~~~~~~~~~~l~~~~~dg------  217 (392)
                       ..-..+...++++.+..+...+.+.+++..+........  .    +.  ..-.++.+...++++++.|+...      
T Consensus       181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~  260 (387)
T d1k3ia3         181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  260 (387)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             ccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcc
Confidence             011112334577888888878888888887765432211  0    11  11123334435667777776321      


Q ss_pred             --eEEEEECCCCc---eee-eec--ccccceeEEEEcCCCeEEEEcCC
Q psy17243        218 --NLIVWDMETGG---EEH-FLA--GHLGCVTCVKLAGDGTVAMSDLP  257 (392)
Q Consensus       218 --~i~iwd~~~~~---~~~-~~~--~~~~~v~~~~~~~dg~~~~~~~~  257 (392)
                        ...+.++....   ... ...  .+...-.+....+||++++.+..
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~  308 (387)
T d1k3ia3         261 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQ  308 (387)
T ss_dssp             CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCB
T ss_pred             cceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCc
Confidence              23444433221   111 111  01112335666789999888764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.88  E-value=0.089  Score=43.54  Aligned_cols=209  Identities=8%  Similarity=-0.003  Sum_probs=126.1

Q ss_pred             cCCeEEEEECCCccceeeecc-CCcCeeEEEecC--CCCeEEEEeCC------------------CeEEEEeCCCCceeE
Q psy17243          4 MDCLVNVWQMNSHELQSTMEG-HLNTVSCVAISP--NSIFAVSGSED------------------NTAKVWGLTLGSVVS   62 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~--~~~~l~~~~~d------------------g~v~iwd~~~~~~~~   62 (392)
                      .++.|-+.|+.+.+..+.+.. ....+..++..+  +..|++..+.+                  +.+.+.|.++.+...
T Consensus       108 an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~  187 (459)
T d1fwxa2         108 ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW  187 (459)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEE
T ss_pred             CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEE
Confidence            467888999998887665443 345566666654  55677776653                  236778999888877


Q ss_pred             EecccccceEEEEEecCCCEEEEEeCCC---------------eEEEEEc-----------------------CCc---e
Q psy17243         63 TFKSHQSTILAVAVLSDSRRVVTSDKAG---------------VIAVWVA-----------------------DNA---Q  101 (392)
Q Consensus        63 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i~iwd~-----------------------~~~---~  101 (392)
                      ++.. ......+.++++|+++++.+.+.               .+.+++.                       ...   .
T Consensus       188 QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~  266 (459)
T d1fwxa2         188 QVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSL  266 (459)
T ss_dssp             EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CS
T ss_pred             Eeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcc
Confidence            7763 44567889999999998876432               2333333                       211   0


Q ss_pred             eeeec--ccceeEEEEeCCCCEEEEecC-CCcEEEEeCCCCC--------CCCcceeeeccccceEEEEEEcCCCEEEEe
Q psy17243        102 LLYSA--LGPSKCLTVTHNMKYIVSGDG-DNSLRIWPTSPQT--------HKDDERFTVSHSEEITCFTVTWDSQYLITG  170 (392)
Q Consensus       102 ~~~~~--~~~~~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  170 (392)
                      .+...  ......+.++|||+++++++. +.++.++|++.-.        ............-....-+|...|+-..+.
T Consensus       267 v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytsl  346 (459)
T d1fwxa2         267 FTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSL  346 (459)
T ss_dssp             SEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEE
T ss_pred             eeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEe
Confidence            11111  112346889999999887765 8999999986211        111111111223344556788777555555


Q ss_pred             eCCCcEEEEEcCCC----------eEEEEEecCCCceeEEE-----EecCCCcEEEEec
Q psy17243        171 SRDMSLKVWQVVGG----------KLAQVLVGHTDHVSCVA-----VAVTNKSLVVSGS  214 (392)
Q Consensus       171 ~~dg~i~i~d~~~~----------~~~~~~~~~~~~v~~~~-----~~~~~~~~l~~~~  214 (392)
                      --|..|.-|++...          ..+.++.-|-.+-...+     .. +++++|++..
T Consensus       347 fids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~-~dgk~l~~~n  404 (459)
T d1fwxa2         347 FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLD-ATNDWLVCLS  404 (459)
T ss_dssp             TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTT-CCSSEEEEEE
T ss_pred             eccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCC-CCCCEEEEec
Confidence            67999999998432          44555554433322211     12 4677777664

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.85  E-value=0.084  Score=42.87  Aligned_cols=195  Identities=9%  Similarity=0.154  Sum_probs=115.0

Q ss_pred             CCCeEEEEeCCCeEEEEeCCCCceeEEecccccceEEEEEec----CC--CEEEEEeC-C---CeEEEEEcCCc-eeeee
Q psy17243         37 NSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS----DS--RRVVTSDK-A---GVIAVWVADNA-QLLYS  105 (392)
Q Consensus        37 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~--~~l~~~~~-d---~~i~iwd~~~~-~~~~~  105 (392)
                      +..+++....++-|.+||++ |+.++.+.  .+.++.+..-.    ++  .-+++++. +   ..|.+|.+... ..+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            44567776777779999985 88887775  34555555432    22  23445542 2   36777876522 22221


Q ss_pred             cc----------cceeEEEE--eCC-CC-EEEEecCCCcEEEEeCCCCCCC---CcceeeeccccceEEEEEEcCCCEEE
Q psy17243        106 AL----------GPSKCLTV--THN-MK-YIVSGDGDNSLRIWPTSPQTHK---DDERFTVSHSEEITCFTVTWDSQYLI  168 (392)
Q Consensus       106 ~~----------~~~~~~~~--~~~-~~-~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~  168 (392)
                      ..          ..+..+|+  ++. +. ++++...+|.+..|.+......   ............+..|.+.+....|+
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY  195 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence            11          12445555  554 43 5667777899988876432221   11222234567889999999989999


Q ss_pred             EeeCCCcEEEEEcCC-----CeEEEEEec--CCCceeEEEEec--C-CCcEEEEecCCCeEEEEECCCC-ceeeeec
Q psy17243        169 TGSRDMSLKVWQVVG-----GKLAQVLVG--HTDHVSCVAVAV--T-NKSLVVSGSKDSNLIVWDMETG-GEEHFLA  234 (392)
Q Consensus       169 ~~~~dg~i~i~d~~~-----~~~~~~~~~--~~~~v~~~~~~~--~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~  234 (392)
                      .+-++..|+.++...     +..+....+  ....+..+++-.  . .+.+|+|.-.+++..|||.... +.+..+.
T Consensus       196 isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            999888777776642     222222222  345666776542  2 2345555556889999998764 5554443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.67  E-value=0.19  Score=44.35  Aligned_cols=205  Identities=11%  Similarity=0.051  Sum_probs=115.6

Q ss_pred             cCCeEEEEECCCccceeeeccCC-------------------------------------c-CeeEEEecCCCCeEEEEe
Q psy17243          4 MDCLVNVWQMNSHELQSTMEGHL-------------------------------------N-TVSCVAISPNSIFAVSGS   45 (392)
Q Consensus         4 ~dg~i~vwd~~~~~~~~~~~~h~-------------------------------------~-~v~~~~~~~~~~~l~~~~   45 (392)
                      ..|.|+-+|..+|+++.++....                                     . .-..+.+.+...+++.+.
T Consensus       180 ~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~t  259 (596)
T d1w6sa_         180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (596)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             ccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccc
Confidence            35889999999999987754210                                     1 112345556555555442


Q ss_pred             C----------------CCeEEEEeCCCCceeEEecc--cc-------cceEEEEE-ecCCC---EEEEEeCCCeEEEEE
Q psy17243         46 E----------------DNTAKVWGLTLGSVVSTFKS--HQ-------STILAVAV-LSDSR---RVVTSDKAGVIAVWV   96 (392)
Q Consensus        46 ~----------------dg~v~iwd~~~~~~~~~~~~--~~-------~~v~~~~~-~~~~~---~l~~~~~d~~i~iwd   96 (392)
                      .                ...|.-.|.++|+.+-.++.  |.       ....-+.. ..+++   .++....+|.+.++|
T Consensus       260 g~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlD  339 (596)
T d1w6sa_         260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD  339 (596)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeec
Confidence            2                24577889999998776653  21       11222221 23443   577788999999999


Q ss_pred             cCCceeeeeccc----------------ce--------------------------eEEEEeCCCCEEEEecCC------
Q psy17243         97 ADNAQLLYSALG----------------PS--------------------------KCLTVTHNMKYIVSGDGD------  128 (392)
Q Consensus        97 ~~~~~~~~~~~~----------------~~--------------------------~~~~~~~~~~~l~~~~~d------  128 (392)
                      ..+++.+.....                ++                          ...+++|+..+++....+      
T Consensus       340 r~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~  419 (596)
T d1w6sa_         340 RTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWE  419 (596)
T ss_dssp             TTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred             CCCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccc
Confidence            999987643210                00                          123556665555544322      


Q ss_pred             ---------------------------------CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCc
Q psy17243        129 ---------------------------------NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS  175 (392)
Q Consensus       129 ---------------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  175 (392)
                                                       |.|.-||+.+++..-.    ..+..+...-.++-.+.+++.|+.||.
T Consensus       420 ~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~----~~~~~~~~gg~lsTagglVF~G~~Dg~  495 (596)
T d1w6sa_         420 PFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWE----KMERFAVWGGTMATAGDLVFYGTLDGY  495 (596)
T ss_dssp             ECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEE----EEESSCCCSBCEEETTTEEEEECTTSE
T ss_pred             cccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecc----cCCCCCCccceeEecCCEEEEECCCCe
Confidence                                             2344455543322111    111111111122335778889999999


Q ss_pred             EEEEEcCCCeEEEEEecCCC-ceeEEEEecCCCcEEEE
Q psy17243        176 LKVWQVVGGKLAQVLVGHTD-HVSCVAVAVTNKSLVVS  212 (392)
Q Consensus       176 i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~  212 (392)
                      ++.+|.++++.+-++.-... .-.-+.+...+.++++.
T Consensus       496 l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav  533 (596)
T d1w6sa_         496 LKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI  533 (596)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEE
Confidence            99999999999988763221 11123344245555554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.49  E-value=0.088  Score=46.34  Aligned_cols=180  Identities=10%  Similarity=0.008  Sum_probs=90.7

Q ss_pred             eEEEEECCCccceeeeccCC---------cCeeEEEecCCC---CeEEEEeCCCeEEEEeCCCCceeEEecccccc----
Q psy17243          7 LVNVWQMNSHELQSTMEGHL---------NTVSCVAISPNS---IFAVSGSEDNTAKVWGLTLGSVVSTFKSHQST----   70 (392)
Q Consensus         7 ~i~vwd~~~~~~~~~~~~h~---------~~v~~~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----   70 (392)
                      .|...|.++++....++...         .+........++   ..++.++.+|.+.++|..+|+.+.........    
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            56667778888776654321         122222222233   36778889999999999999987654321110    


Q ss_pred             -------------------------------eEEEEEecCCCEEEEEeCCCeEEEEEcCCceeeeeccc------ceeEE
Q psy17243         71 -------------------------------ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG------PSKCL  113 (392)
Q Consensus        71 -------------------------------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~  113 (392)
                                                     -..++++|+...+++...+....++.....+.......      .....
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  443 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence                                           11234566655565555554444443332221110000      00000


Q ss_pred             EEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec
Q psy17243        114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG  192 (392)
Q Consensus       114 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  192 (392)
                      .+. .+. -.....-|.+.-||+.+++..-..    ....+...=.++-.+.++++|+.||.++.||.++++.+-++.-
T Consensus       444 ~~~-~~~-p~~~~~~G~l~AiD~~tGk~~W~~----~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         444 KFF-NAE-PPKSKPFGRLLAWDPVAQKAAWSV----EHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEE-CSS-CCCSCCEEEEEEEETTTTEEEEEE----EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccc-ccC-CCCCCCcccEEEeCCCCCceEeee----cCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            000 000 000000134555555433222111    1111111112333678999999999999999999999988764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.35  E-value=0.23  Score=41.73  Aligned_cols=223  Identities=13%  Similarity=0.058  Sum_probs=116.3

Q ss_pred             CCcCeeEEEecCCCCeEEEE-eC----CCeEEEEeCCCCceeEEecccccceEEEEEecCCCEEEEEeCC----------
Q psy17243         25 HLNTVSCVAISPNSIFAVSG-SE----DNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKA----------   89 (392)
Q Consensus        25 h~~~v~~~~~~~~~~~l~~~-~~----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------   89 (392)
                      +.-.+...+++|++++++.+ +.    ...|+++|+++++.+...- .......++|.++++.|+....+          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            33345567889999988743 22    3469999999998765322 12223568899999988765432          


Q ss_pred             ------CeEEEEEcCCce----eeeeccc---ceeEEEEeCCCCEEEEecC---CCc--EEEEeCCCCCCCC-----cce
Q psy17243         90 ------GVIAVWVADNAQ----LLYSALG---PSKCLTVTHNMKYIVSGDG---DNS--LRIWPTSPQTHKD-----DER  146 (392)
Q Consensus        90 ------~~i~iwd~~~~~----~~~~~~~---~~~~~~~~~~~~~l~~~~~---d~~--i~~~d~~~~~~~~-----~~~  146 (392)
                            ..+..+.+.+..    .+.....   ....+..+.++++++....   +..  +.+.|+.......     ...
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                  257777777653    2333222   2345667889888765332   233  4444543221110     111


Q ss_pred             eeeccccceEEEEEEcCCCEEEEee---CCCcEEEEEcCCCeE--EEE-EecCCCceeEEEEecCCCcEEEEecCCC--e
Q psy17243        147 FTVSHSEEITCFTVTWDSQYLITGS---RDMSLKVWQVVGGKL--AQV-LVGHTDHVSCVAVAVTNKSLVVSGSKDS--N  218 (392)
Q Consensus       147 ~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~  218 (392)
                      .......... ...+.++.+++...   .++.|...++.....  ... +..+...+..-.+...++.+++.-..++  .
T Consensus       282 ~~~~~~~~~~-~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~  360 (430)
T d1qfma1         282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (430)
T ss_dssp             EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             eecccccceE-EEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeE
Confidence            1111122222 22222333333332   246677777765432  123 3334444443333323444555544554  4


Q ss_pred             EEEEECCCCceeeeecccccceeEEEEcCCC
Q psy17243        219 LIVWDMETGGEEHFLAGHLGCVTCVKLAGDG  249 (392)
Q Consensus       219 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~dg  249 (392)
                      |+++++.+++.........+.|..+...++.
T Consensus       361 l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~  391 (430)
T d1qfma1         361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKD  391 (430)
T ss_dssp             EEEEETTTCCEEEEECCCSSEEEEEECCTTC
T ss_pred             EEEEECCCCcEEEecCCCCceEeeccCCCCC
Confidence            8889998877655444344445444444433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.08  E-value=0.066  Score=44.30  Aligned_cols=97  Identities=12%  Similarity=0.091  Sum_probs=62.3

Q ss_pred             EEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC-CcEEEEEcCCCeEEEEEecCC-CceeEEEEecCCCc
Q psy17243        131 LRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-MSLKVWQVVGGKLAQVLVGHT-DHVSCVAVAVTNKS  208 (392)
Q Consensus       131 i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~  208 (392)
                      +.+||..++...........+.......++.+++++++.|+.+ ..+.+||..+.+-...-.... ..-...+.. .++.
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~-~dG~  132 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM-SDGR  132 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC-TTSC
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeee-cCCc
Confidence            6789998776654444433444444566788999999988755 689999998876543211111 112234444 5777


Q ss_pred             EEEEecCC------CeEEEEECCCCc
Q psy17243        209 LVVSGSKD------SNLIVWDMETGG  228 (392)
Q Consensus       209 ~l~~~~~d------g~i~iwd~~~~~  228 (392)
                      +++.|+.+      ..+.+||..+.+
T Consensus       133 v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         133 VFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eeeeccccccccccceeeeecCCCCc
Confidence            88877643      358999988764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.81  E-value=0.31  Score=42.76  Aligned_cols=80  Identities=11%  Similarity=0.043  Sum_probs=46.8

Q ss_pred             CcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEecCCCc-eeEEEEecCCC
Q psy17243        129 NSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDH-VSCVAVAVTNK  207 (392)
Q Consensus       129 ~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~  207 (392)
                      |.|.-+|+.+++..-...    ...++..-.++..+.++++|+.||.++.||.++|+.+-++.-.... -.-+.+...+.
T Consensus       466 G~l~AiD~~TG~i~W~~~----~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHK----EHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEE----ESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecC----CCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            566667776543322211    1122222123446778899999999999999999999887632211 11245553444


Q ss_pred             cEEEE
Q psy17243        208 SLVVS  212 (392)
Q Consensus       208 ~~l~~  212 (392)
                      ++++.
T Consensus       542 qYv~i  546 (582)
T d1flga_         542 QYLGV  546 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.39  Score=37.41  Aligned_cols=215  Identities=10%  Similarity=0.059  Sum_probs=96.3

Q ss_pred             CeEEEEECCCcc--ceeeeccCCcCeeEEEecCCCCeEEEEeC---------CCeEEEEeCCCCceeEEecccccceEEE
Q psy17243          6 CLVNVWQMNSHE--LQSTMEGHLNTVSCVAISPNSIFAVSGSE---------DNTAKVWGLTLGSVVSTFKSHQSTILAV   74 (392)
Q Consensus         6 g~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~~   74 (392)
                      ..+.+||+++.+  .+..+......-..+..  +++.++.|+.         -..+.+||..+.+....-......-...
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            357899988754  33233222222222222  4556666553         1356788877654432111111111111


Q ss_pred             EEecCCCEEEEEeCCC-----eEEEEEcCCceeeeecccce----eEEEEeCCCCEEEEecCC-----CcEEEEeCCCCC
Q psy17243         75 AVLSDSRRVVTSDKAG-----VIAVWVADNAQLLYSALGPS----KCLTVTHNMKYIVSGDGD-----NSLRIWPTSPQT  140 (392)
Q Consensus        75 ~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~  140 (392)
                      +...+++.++.++.++     ....+|..+.........+.    .+... .+...++.|+.+     ..+..||.....
T Consensus        97 ~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~~~GG~~~~~~~~~~~~~d~~~~~  175 (288)
T d1zgka1          97 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLYAVGGFDGTNRLNSAECYYPERNE  175 (288)
T ss_dssp             EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             ccccceeeEEecceecccccceeeeeccccCccccccccccccccceeee-eeecceEecCcccccccceEEEeeccccc
Confidence            1122555555554333     24456666654432221111    12222 244455555443     456777775432


Q ss_pred             CCCcceeeeccccceEEEEEEcCCCEEEEeeCC-----CcEEEEEcCCCeEEEEEecCCCce-eEEEEecCCCcEEEEec
Q psy17243        141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-----MSLKVWQVVGGKLAQVLVGHTDHV-SCVAVAVTNKSLVVSGS  214 (392)
Q Consensus       141 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~  214 (392)
                      .......  .......+.... ++..++.|+.+     .....+|..+.+....-....... .+++..  ++++++.|+
T Consensus       176 ~~~~~~~--~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG  250 (288)
T d1zgka1         176 WRMITAM--NTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGG  250 (288)
T ss_dssp             EEECCCC--SSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             ccccccc--ccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEE--CCEEEEEec
Confidence            2111111  011111222222 45566665543     356788887765443221111111 233333  567777776


Q ss_pred             CCC-----eEEEEECCCCc
Q psy17243        215 KDS-----NLIVWDMETGG  228 (392)
Q Consensus       215 ~dg-----~i~iwd~~~~~  228 (392)
                      .++     .|.+||+.+.+
T Consensus       251 ~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         251 YDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             BCSSCBCCEEEEEETTTTE
T ss_pred             CCCCeecceEEEEECCCCE
Confidence            544     37788887654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.4  Score=39.17  Aligned_cols=136  Identities=14%  Similarity=0.034  Sum_probs=78.1

Q ss_pred             cCeeEEEecCCCCeEEEEeCCCeEEEEeCC-----------CCceeEEecccccceEEEEEecCCCEEEEEeCCCeEEEE
Q psy17243         27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLT-----------LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW   95 (392)
Q Consensus        27 ~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw   95 (392)
                      ....-++.++...+++.|+.++ ++|-.++           ........  .-..|..++|+.+  .+++. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence            4567788888777888888775 6676532           11111111  1236889999754  45554 45567777


Q ss_pred             EcCCce---eeeecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcce--eeeccccceEEEEEEcCCCEEEEe
Q psy17243         96 VADNAQ---LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER--FTVSHSEEITCFTVTWDSQYLITG  170 (392)
Q Consensus        96 d~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~  170 (392)
                      +...-.   .......+...+.++|  ..++....++.+.++++..........  ....-...+.+++|++.+..++++
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             EeeccccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence            765533   2333445666666666  457777788999999987543221110  000122445566666666556555

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=94.68  E-value=0.68  Score=35.84  Aligned_cols=10  Identities=20%  Similarity=0.514  Sum_probs=5.3

Q ss_pred             CCeEEEEeCC
Q psy17243         47 DNTAKVWGLT   56 (392)
Q Consensus        47 dg~v~iwd~~   56 (392)
                      ||.|..|-..
T Consensus        43 dG~v~~wG~N   52 (273)
T d1jtdb_          43 GGKVLGWGAN   52 (273)
T ss_dssp             TTEEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            5556555443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.44  E-value=0.95  Score=36.39  Aligned_cols=165  Identities=8%  Similarity=0.104  Sum_probs=91.6

Q ss_pred             CCeEEEEECCCcccee-eeccCC-------cCeeEEEe--cCCCC-eEEEEe---CCCeEEEEeCCCCce-e---EEecc
Q psy17243          5 DCLVNVWQMNSHELQS-TMEGHL-------NTVSCVAI--SPNSI-FAVSGS---EDNTAKVWGLTLGSV-V---STFKS   66 (392)
Q Consensus         5 dg~i~vwd~~~~~~~~-~~~~h~-------~~v~~~~~--~~~~~-~l~~~~---~dg~v~iwd~~~~~~-~---~~~~~   66 (392)
                      .|.|.++|+++.+... .+....       -.-..+..  .++++ +|++..   ...+|.+|++..... +   .++..
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4889999987643222 221111       11233333  34554 344442   346788888754321 1   22221


Q ss_pred             -cccceEEEEEecCCCEEEEEe-----------------CCCeEEEEEcCCceeeeecccceeEEEEeCCCCEEEEe-cC
Q psy17243         67 -HQSTILAVAVLSDSRRVVTSD-----------------KAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSG-DG  127 (392)
Q Consensus        67 -~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~  127 (392)
                       .....+++.+..++..+++-.                 ..+.+.-||....+.+..-....+.++++|++++|+++ +.
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~  226 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELL  226 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCC
Confidence             123478899988888777732                 12345555555555444444567899999999877666 45


Q ss_pred             CCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEe
Q psy17243        128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITG  170 (392)
Q Consensus       128 d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  170 (392)
                      .+.|+.|++......... ....-....-.+.+.+.+..++++
T Consensus       227 ~~~i~~y~~~~~~~l~~~-~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         227 AHKIHVYEKHANWTLTPL-RVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             GTEEEEEEECTTSCEEEE-EEEECSSEEEEEEECTTTCCEEEE
T ss_pred             CCeEEEEEeCCCcccceE-EEecCCCCCCccEEecCCCEEEEE
Confidence            788999998744322222 222234555667776543334444

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.39  E-value=1.6  Score=35.46  Aligned_cols=177  Identities=8%  Similarity=-0.045  Sum_probs=98.3

Q ss_pred             cceEEEEEecCCCEEEEEeCCCeEEEEEcCCc-----------eee-eecccceeEEEEeCCCCEEEEecCCCcEEEEeC
Q psy17243         69 STILAVAVLSDSRRVVTSDKAGVIAVWVADNA-----------QLL-YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPT  136 (392)
Q Consensus        69 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----------~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~  136 (392)
                      ....-++.++...+++.|+.++ +.+..+..-           ... ......+..++++.+  .+++. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            3456778888777888887775 556653211           111 111124566777644  45554 4456778877


Q ss_pred             CCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEEEec-----CCCceeEEEEecCCCcEEE
Q psy17243        137 SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG-----HTDHVSCVAVAVTNKSLVV  211 (392)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~  211 (392)
                      ...   ...........++..+.++|  ..++....++.+.++++.+++......+     -.+.+.+++|+ +++..++
T Consensus       113 ~~l---~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws-~kgkq~v  186 (381)
T d1xipa_         113 EEL---SEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLK-DRSFQSF  186 (381)
T ss_dssp             SST---TCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEET-TSCEEEE
T ss_pred             ecc---ccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEe-CCcEEEE
Confidence            632   22222223445677777665  4566777789999999988864332211     13456677777 5566666


Q ss_pred             EecCCCeEEEE-ECCCCceeeeecccccceeEEEEcCCCeEEEEcC
Q psy17243        212 SGSKDSNLIVW-DMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL  256 (392)
Q Consensus       212 ~~~~dg~i~iw-d~~~~~~~~~~~~~~~~v~~~~~~~dg~~~~~~~  256 (392)
                      ++..+ ...+- ++.....+.........|.++.|-.+..+++.-.
T Consensus       187 ~~~g~-~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         187 AWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             EEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EeCCC-ceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence            55322 12111 2221111111112345688999998888887654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.27  E-value=1.6  Score=35.00  Aligned_cols=184  Identities=9%  Similarity=0.068  Sum_probs=101.6

Q ss_pred             EEEEEecCCCEEEEEe------------CCCeEEEEEcCCceeee---ecc-c-------ceeEEE--EeCCCC-EEEEe
Q psy17243         72 LAVAVLSDSRRVVTSD------------KAGVIAVWVADNAQLLY---SAL-G-------PSKCLT--VTHNMK-YIVSG  125 (392)
Q Consensus        72 ~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~---~~~-~-------~~~~~~--~~~~~~-~l~~~  125 (392)
                      ..|...|++..+++++            ..|.|.++|+.+.+...   ... .       ....+.  -.+++. +|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            3456666665555543            24889999987653211   111 1       112333  344554 34443


Q ss_pred             ---cCCCcEEEEeCCCCCCCCcceeee--ccccceEEEEEEcCCCEEEEeeC---------------CCcEEEEEcCCCe
Q psy17243        126 ---DGDNSLRIWPTSPQTHKDDERFTV--SHSEEITCFTVTWDSQYLITGSR---------------DMSLKVWQVVGGK  185 (392)
Q Consensus       126 ---~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~  185 (392)
                         ....+|.+|++.............  ......+.+.+..++.+++|-..               -+...+|....++
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence               245678888876433221111111  22345788999888888887321               1223444443333


Q ss_pred             EEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECCCCceeeee--cccccceeEEEEcC-CCeEEEEcC
Q psy17243        186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL--AGHLGCVTCVKLAG-DGTVAMSDL  256 (392)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~-dg~~~~~~~  256 (392)
                      ...... .-...+.|+++|.+..++++-+..+.|++|++...+.+...  ..-......+.+.+ +|.+.+...
T Consensus       198 ~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         198 VRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             EEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             eEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            322222 33567899999666667777788899999998755433221  12334567788875 666666543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.03  E-value=1.8  Score=34.83  Aligned_cols=145  Identities=14%  Similarity=0.256  Sum_probs=82.5

Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCceeeeecc-cceeEEEEe------CCCCEEEEecC--C--CcEEEEeCCCCCCCCc-c
Q psy17243         78 SDSRRVVTSDKAGVIAVWVADNAQLLYSAL-GPSKCLTVT------HNMKYIVSGDG--D--NSLRIWPTSPQTHKDD-E  145 (392)
Q Consensus        78 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~------~~~~~l~~~~~--d--~~i~~~d~~~~~~~~~-~  145 (392)
                      |+...++.....+-|++||+. |+.+.... +.++.+..-      .....+++++.  +  ..|.+|.+........ .
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            445677777888789999996 55555443 455544432      22223445442  2  3577777642211000 0


Q ss_pred             ----eeeeccccceEEEEE--EcC-CC-EEEEeeCCCcEEEEEcC---CC----eEEEEEecCCCceeEEEEecCCCcEE
Q psy17243        146 ----RFTVSHSEEITCFTV--TWD-SQ-YLITGSRDMSLKVWQVV---GG----KLAQVLVGHTDHVSCVAVAVTNKSLV  210 (392)
Q Consensus       146 ----~~~~~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~~l  210 (392)
                          .........+..+|+  ++. +. ++++...+|.+..|.+.   .+    +.++.+. ....+..+.+. +....|
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvD-de~~~L  194 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAAD-DEYGSL  194 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEE-TTTTEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEe-CCCCcE
Confidence                000111234566666  554 43 56777788999888773   22    3444554 35678888898 555566


Q ss_pred             EEecCCCeEEEEECC
Q psy17243        211 VSGSKDSNLIVWDME  225 (392)
Q Consensus       211 ~~~~~dg~i~iwd~~  225 (392)
                      +.+-++.-|..+++.
T Consensus       195 yisEE~~Giw~~~a~  209 (353)
T d1h6la_         195 YIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEEETTTEEEEEESS
T ss_pred             EEecCccceEEEEec
Confidence            667777767666654

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=89.12  E-value=3.7  Score=31.38  Aligned_cols=125  Identities=13%  Similarity=0.120  Sum_probs=58.3

Q ss_pred             CCCeEEEEEcCCc-eee--eecccceeEEEEeCCCCEEEEecCCCcEEEEeCCCCCCCCcceeeeccccceEEEEEEcCC
Q psy17243         88 KAGVIAVWVADNA-QLL--YSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS  164 (392)
Q Consensus        88 ~d~~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  164 (392)
                      .|+.+..|..... +..  ......+..+......  .+ ...|+.+..|.........   ........|..++-  ..
T Consensus        81 ~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~~--~~-~~~dg~v~~~g~~~~~~~~---~~~~~~~~v~~~~~--~~  152 (273)
T d1jtdb_          81 KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA--SY-ALKDGKVIAWGDDSDGQTT---VPAEAQSGVTALDG--GV  152 (273)
T ss_dssp             ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETTE--EE-EEETTEEEEEECCTTSTTS---CCGGGGSSEEEEEE--CS
T ss_pred             eeeeeeccCCCcceeeccccccccceeEEeeeccc--cc-ccccccceecccCCCCcee---eeccCCceEEEEec--cc
Confidence            4788999975432 211  1112233333333222  22 2247888888654322211   11122334444332  22


Q ss_pred             CEEEEeeCCCcEEEEEcCCCeEEEEEecCCCceeEEEEecCCCcEEEEecCCCeEEEEECC
Q psy17243        165 QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME  225 (392)
Q Consensus       165 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  225 (392)
                      ..++ ...++.++.|-................|..|+..  ....++ -. ||.|+-|=..
T Consensus       153 ~~~~-~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G--~~h~~~-l~-dG~v~~WG~n  208 (273)
T d1jtdb_         153 YTAL-AVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGG--IFHSLA-LK-DGKVIAWGDN  208 (273)
T ss_dssp             SEEE-EEETTEEEEEECCTTSTTSCCGGGSSSEEEEEEC--SSEEEE-EE-TTEEEEEECC
T ss_pred             eeee-eecccceeEeecccCCcccccccccCCccceecc--ceeeEE-Ee-cCcEEEcCCC
Confidence            2233 3347788888654332222222234567777654  233333 23 7999999543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.50  E-value=8.8  Score=31.83  Aligned_cols=54  Identities=19%  Similarity=0.182  Sum_probs=39.3

Q ss_pred             CcCeeEEEecCCCCeEEEEeCCCeEEEEeCCCCceeE--Eec------ccccceEEEEEecC
Q psy17243         26 LNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS--TFK------SHQSTILAVAVLSD   79 (392)
Q Consensus        26 ~~~v~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~------~~~~~v~~~~~~~~   79 (392)
                      -..-++|+|.|++++|++--..|.|++++..+++...  .+.      ..+.....|+++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4567799999999988776557999999987775432  221      12356789999985

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=82.72  E-value=7  Score=28.52  Aligned_cols=146  Identities=15%  Similarity=0.215  Sum_probs=80.5

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeeecccceeEEEEeC-CCCEEEEe------cCCCcEEEEeCCCCCCCCcceeeecc
Q psy17243         79 DSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH-NMKYIVSG------DGDNSLRIWPTSPQTHKDDERFTVSH  151 (392)
Q Consensus        79 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~d~~i~~~d~~~~~~~~~~~~~~~~  151 (392)
                      +.+.++.+...|.+.++-+..++.+.-...|+.....-. .-.++...      -+-..|..-++..  ...+.  ..+.
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~--~GEE~--~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR--PGEEQ--RLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTS--TTCEE--ECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCC--CCeee--EecC
Confidence            445778888899999999998888776666665433222 11222221      1122344444431  11111  2223


Q ss_pred             cc--ceEEEEEEcCCCEEEEeeCCCcEEEEEcCCCeEEEE--Eec-------CCCceeEEEEecCCCcEEEEecC-CCeE
Q psy17243        152 SE--EITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV--LVG-------HTDHVSCVAVAVTNKSLVVSGSK-DSNL  219 (392)
Q Consensus       152 ~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~-------~~~~v~~~~~~~~~~~~l~~~~~-dg~i  219 (392)
                      ..  .|.+++.. +.+..++|+......+|-++.++..+.  +.+       ...-|..+.+...+..-++++.. .|.+
T Consensus       101 pk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         101 VKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             SCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             CceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            33  44555443 466888898888899999988865432  222       12334445444333333444444 6777


Q ss_pred             EEEECCCCce
Q psy17243        220 IVWDMETGGE  229 (392)
Q Consensus       220 ~iwd~~~~~~  229 (392)
                      +|++...|..
T Consensus       180 ri~tpkeGS~  189 (313)
T d2hu7a1         180 RVFDSGEGSF  189 (313)
T ss_dssp             EEECCSSEEE
T ss_pred             EEecCCCCcc
Confidence            7777665543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.52  E-value=9  Score=28.95  Aligned_cols=201  Identities=10%  Similarity=0.052  Sum_probs=88.4

Q ss_pred             CeEEEEeCCCCceeE--EecccccceEEEEEecCCCEEEEEeC---------CCeEEEEEcCCceeeeecccce---eEE
Q psy17243         48 NTAKVWGLTLGSVVS--TFKSHQSTILAVAVLSDSRRVVTSDK---------AGVIAVWVADNAQLLYSALGPS---KCL  113 (392)
Q Consensus        48 g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~---~~~  113 (392)
                      ..+.+||+++++-..  .+...... .+++.. +++.++.|+.         -..+.+||..+.+.......+.   ...
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSG-LAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEECCCCeEEECCCCCCccce-eEEEEE-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            357899998875433  22221111 122222 4555555542         2356778887665433221111   112


Q ss_pred             EEeCCCCEEEEecCCCc-----EEEEeCCCCCCCCcceeeeccccceEEEEEEcCCCEEEEeeCC-----CcEEEEEcCC
Q psy17243        114 TVTHNMKYIVSGDGDNS-----LRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD-----MSLKVWQVVG  183 (392)
Q Consensus       114 ~~~~~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  183 (392)
                      +...+++.++.++.++.     ...++..+.......... ..... .++... ++..++.|+.+     ..+..||..+
T Consensus        97 ~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~-~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~  173 (288)
T d1zgka1          97 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML-TRRIG-VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER  173 (288)
T ss_dssp             EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS-SCCBS-CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             ccccceeeEEecceecccccceeeeeccccCccccccccc-ccccc-ceeeee-eecceEecCcccccccceEEEeeccc
Confidence            22235556665554433     334555432211111000 00111 122222 34455555543     4578888877


Q ss_pred             CeEEEEEec-CCCceeEEEEecCCCcEEEEecCC-----CeEEEEECCCCceeeeeccccccee-EEEEcCCCeEEEEcC
Q psy17243        184 GKLAQVLVG-HTDHVSCVAVAVTNKSLVVSGSKD-----SNLIVWDMETGGEEHFLAGHLGCVT-CVKLAGDGTVAMSDL  256 (392)
Q Consensus       184 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~dg~~~~~~~  256 (392)
                      .+....-.. ......+....  ++.+++.|+.+     .....+|..+.+....-........ +++. .++++++.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG  250 (288)
T d1zgka1         174 NEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGG  250 (288)
T ss_dssp             TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred             cccccccccccccccccccce--eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEec
Confidence            654322111 11111233333  45666666544     3467788776554332111111121 2232 3678777765