Psyllid ID: psy17307

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDNKDLLKELLSPITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEILADPTVTSKMQDTKALDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNERKK
cEEEEEccccccccEEEEEEccccccHHHHHHccccccEEEEEEEEEEEEcccccccccEEEEEEEEEEEEEEcccccEEEEEccccccHHHHHHccccccEEEEEEEEEEEEccccccccccEEEEEEEEEEEEEEEEccccEEEEEEEEEEccccccccEEEEEEEccccEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEccEEEEEEEEcEEEEEEEEEEEcccccccccHHHHHHHHccHHHHHHHHcccHHHHHccccEEEEEccccccccHHHHHccHHHHHHHHHcccccccEEEEcHHHHHHHHHcccccEEEEEcccccccccccccc
ccEEEccccccccccEEEEEcccHHHHHHHHHHHccccEEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEcccccEEEEEEccHHHHHHHHHHcccccEEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEcccEEEEEEccccHHHHHHHHHHccHcccccEEEEEEEcccEEEEEEEcccEEEEEEEEcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccHHHHHHHHHccccccccEcccHHHHHHHHHcccHEEEEEEHHHHcHccHHHHcc
mklvhknindkdksgvvalvpeesedMWHAYNLIaegdsvraSTIRKvqsesntgsstssRVRTMLTISVESIDFDTQACVLRLKESEDMWHAYNLitegdsvraSTIRKVqsesntgsstssRVRTMLTISVESIDFDTQACVLRLkgrniqenqyVKMGAYHTLDLELnrkfelskpewdSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIetniprkrrdNKDLLKELLSPITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEIladptvtskmqdtkaldpsrafygyrhvsaanesqAIDTLLIADCLfrnsdlnerkk
mklvhknindkdksgvVALVPEESEDMWHAYNLIAEGDSVRASTIRKvqsesntgsstssrvRTMLTIsvesidfdtQACVLRLKESEDMWHAYNLitegdsvrasTIRKvqsesntgsstssrvRTMLTISvesidfdtQACVLRLkgrniqenqyVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIetniprkrrdnkdLLKELlspittveavkmDNKVLLENKSKFLLVHSSSAFKHSLKEILadptvtskmqdtkalDPSRAFYGYRHVSAANESQAIDTLLIADCLfrnsdlnerkk
MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQsesntgsstssRVRTMLTISVESIDFDTQACVLRLKESEDMWHAYNLITEGDSVRASTIRKVQsesntgsstssRVRTMLTISVESIDFDTQACVLRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDNKDLLKELLSPITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEILADPTVTSKMQDTKALDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNERKK
*****************ALV*****DMWHAYNLIAE****************************MLTISVESIDFDTQACVLRLKESEDMWHAYNLITEG***************************MLTISVESIDFDTQACVLRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIP*******DLLKELLSPITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEILA*****************RAFYGYRHVSAANESQAIDTLLIADCLFR*********
*K**H**I**KDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIR******************MLTISVESIDFDTQACVLRLKESEDMWHAYNLITEGDSVRASTI********************LTISVESIDFDTQACVLRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVR***************DLLKELLSPITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEILADPTVTSKMQDTKALDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNS*******
MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRAST*****************VRTMLTISVESIDFDTQACVLRLKESEDMWHAYNLITEGDSVRAST*****************VRTMLTISVESIDFDTQACVLRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDNKDLLKELLSPITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEILADPTVTSKMQDTKALDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNERKK
*KLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDNKDLLKELLSPITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEILADPTVTSKMQDTKALDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDL*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDNKDLLKELLSPITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEILADPTVTSKMQDTKALDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNERKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query342 2.2.26 [Sep-21-2011]
P48612395 Protein pelota OS=Drosoph yes N/A 0.754 0.653 0.613 1e-100
Q5XIP1385 Protein pelota homolog OS yes N/A 0.754 0.670 0.525 5e-86
Q5RCE3385 Protein pelota homolog OS yes N/A 0.754 0.670 0.532 5e-86
Q58DV0385 Protein pelota homolog OS yes N/A 0.754 0.670 0.529 6e-86
Q9BRX2385 Protein pelota homolog OS yes N/A 0.754 0.670 0.542 2e-85
Q7ZWC4385 Protein pelota homolog OS yes N/A 0.751 0.667 0.537 2e-85
Q5ZK01385 Protein pelota homolog OS yes N/A 0.754 0.670 0.522 2e-85
Q80X73385 Protein pelota homolog OS yes N/A 0.754 0.670 0.522 5e-85
Q5U567383 Protein pelota homolog OS N/A N/A 0.754 0.673 0.525 1e-84
P50444381 Uncharacterized protein R yes N/A 0.777 0.698 0.471 1e-64
>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2 Back     alignment and function desciption
 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/308 (61%), Positives = 228/308 (74%), Gaps = 50/308 (16%)

Query: 85  KESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACV 144
           +ESEDMWHAYNLI +GDSVR++TIRKVQ+E+ TGSSTSSRVRT LTI+VESIDFDTQACV
Sbjct: 21  EESEDMWHAYNLIAKGDSVRSTTIRKVQNETATGSSTSSRVRTTLTIAVESIDFDTQACV 80

Query: 145 LRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAV 204
           LRLKGRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV
Sbjct: 81  LRLKGRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAV 140

Query: 205 MMQEGLANIMLITASMSLVRTKIETNIPRKRRD------------------------NKD 240
           +MQEGLA++ LITASM+LVR+KIE +IPRKR+                         N D
Sbjct: 141 VMQEGLAHVCLITASMTLVRSKIEVSIPRKRKGSVQQHEKGLAKFYEQVMQSILRHVNFD 200

Query: 241 LLKELL--SP---------ITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEILADP 289
           ++K +L  SP             +AVKMD K+LL+NKSKF+LVH+SS FKHSL+EIL DP
Sbjct: 201 VVKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKFMLVHASSGFKHSLREILQDP 260

Query: 290 TVTSKMQDTKA---------------LDPSRAFYGYRHVSAANESQAIDTLLIADCLFRN 334
            V +KM DTKA                +P++AFYG +HV  A ESQAI+TLLI+D LFR 
Sbjct: 261 AVLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVLQAAESQAIETLLISDNLFRC 320

Query: 335 SDLNERKK 342
            D++ RK+
Sbjct: 321 QDVSLRKE 328
Required prior to the first meiotic division for spindle formation and nuclear envelope breakdown during spermatogenesis. It is also required for normal eye patterning and for mitotic divisions in the ovary. Required for ovarian germ line stem cell self-renewal. May play a role in regulating translation. May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1 Back     alignment and function description
>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1 Back     alignment and function description
>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2 Back     alignment and function description
>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2 Back     alignment and function description
>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1 Back     alignment and function description
>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1 Back     alignment and function description
>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3 Back     alignment and function description
>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1 Back     alignment and function description
>sp|P50444|YNU6_CAEEL Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
194765587394 GF22793 [Drosophila ananassae] gi|190617 0.763 0.662 0.617 3e-99
195063312394 GH25139 [Drosophila grimshawi] gi|193895 0.763 0.662 0.610 7e-99
195438391396 GK24186 [Drosophila willistoni] gi|19416 0.789 0.681 0.595 2e-98
194859216392 GG10049 [Drosophila erecta] gi|190661199 0.754 0.658 0.613 2e-98
195577887394 GD23623 [Drosophila simulans] gi|1941908 0.754 0.654 0.613 3e-98
195147042394 GL18928 [Drosophila persimilis] gi|19410 0.754 0.654 0.610 3e-98
125985205394 GA17805 [Drosophila pseudoobscura pseudo 0.754 0.654 0.610 3e-98
17136914395 pelota [Drosophila melanogaster] gi|8570 0.754 0.653 0.613 3e-98
195339511394 GM17647 [Drosophila sechellia] gi|194130 0.754 0.654 0.613 3e-98
195473349394 GE18863 [Drosophila yakuba] gi|194175059 0.754 0.654 0.613 4e-98
>gi|194765587|ref|XP_001964908.1| GF22793 [Drosophila ananassae] gi|190617518|gb|EDV33042.1| GF22793 [Drosophila ananassae] Back     alignment and taxonomy information
 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 192/311 (61%), Positives = 230/311 (73%), Gaps = 50/311 (16%)

Query: 82  LRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQ 141
           L  +ESEDMWHAYNLI+EGDSVR++TIRKVQ+E+ TGSSTS+RVRT LTI+VESIDFDTQ
Sbjct: 18  LMPEESEDMWHAYNLISEGDSVRSTTIRKVQNETATGSSTSNRVRTTLTIAVESIDFDTQ 77

Query: 142 ACVLRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADV 201
           ACVLRLKGRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+   +ADV
Sbjct: 78  ACVLRLKGRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTHSADV 137

Query: 202 AAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRD------------------------ 237
           AAV+MQEGLA++ LITASM+LVR+KIE +IPRKR+                         
Sbjct: 138 AAVVMQEGLAHVCLITASMTLVRSKIEVSIPRKRKGSVQQHEKGLAKFYEQVMQSILRHV 197

Query: 238 NKDLLKELL--SP---------ITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEIL 286
           N D++K +L  SP             +AVKMD K+LL+NKSKF+LVH+SS FKHSLKE+L
Sbjct: 198 NFDVVKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKFMLVHASSGFKHSLKEVL 257

Query: 287 ADPTVTSKMQDTKA---------------LDPSRAFYGYRHVSAANESQAIDTLLIADCL 331
            DP V SKM DTKA                +P++AFYG +HV  A+ESQAI+TLLI+D L
Sbjct: 258 QDPAVVSKMSDTKAAGEVKALEVFYMMLQCEPAKAFYGKKHVLRASESQAIETLLISDNL 317

Query: 332 FRNSDLNERKK 342
           FR  D+N RK+
Sbjct: 318 FRCQDVNLRKE 328

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195063312|ref|XP_001996357.1| GH25139 [Drosophila grimshawi] gi|193895222|gb|EDV94088.1| GH25139 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195438391|ref|XP_002067120.1| GK24186 [Drosophila willistoni] gi|194163205|gb|EDW78106.1| GK24186 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|194859216|ref|XP_001969332.1| GG10049 [Drosophila erecta] gi|190661199|gb|EDV58391.1| GG10049 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195577887|ref|XP_002078800.1| GD23623 [Drosophila simulans] gi|194190809|gb|EDX04385.1| GD23623 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195147042|ref|XP_002014489.1| GL18928 [Drosophila persimilis] gi|194106442|gb|EDW28485.1| GL18928 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|125985205|ref|XP_001356366.1| GA17805 [Drosophila pseudoobscura pseudoobscura] gi|54644689|gb|EAL33429.1| GA17805 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|17136914|ref|NP_476982.1| pelota [Drosophila melanogaster] gi|85701378|sp|P48612.2|PELO_DROME RecName: Full=Protein pelota gi|7297544|gb|AAF52799.1| pelota [Drosophila melanogaster] gi|16198139|gb|AAL13873.1| LD34262p [Drosophila melanogaster] gi|220946020|gb|ACL85553.1| CG3959-PA [synthetic construct] gi|220955770|gb|ACL90428.1| pelo-PA [synthetic construct] Back     alignment and taxonomy information
>gi|195339511|ref|XP_002036363.1| GM17647 [Drosophila sechellia] gi|194130243|gb|EDW52286.1| GM17647 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195473349|ref|XP_002088958.1| GE18863 [Drosophila yakuba] gi|194175059|gb|EDW88670.1| GE18863 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
FB|FBgn0011207 395 pelo "pelota" [Drosophila mela 0.444 0.384 0.763 3.5e-84
UNIPROTKB|F2Z5N9 385 PELO "Uncharacterized protein" 0.450 0.4 0.642 1.1e-74
UNIPROTKB|H9L2N7361 PELO "Protein pelota homolog" 0.450 0.426 0.629 1.1e-74
UNIPROTKB|H9L2N8 384 PELO "Protein pelota homolog" 0.450 0.401 0.629 1.1e-74
UNIPROTKB|Q5ZK01 385 PELO "Protein pelota homolog" 0.450 0.4 0.629 2.3e-74
MGI|MGI:2145154 385 Pelo "pelota homolog (Drosophi 0.450 0.4 0.629 5.9e-74
ZFIN|ZDB-GENE-040426-1074 385 pelo "pelota homolog (Drosophi 0.441 0.392 0.649 2.5e-73
DICTYBASE|DDB_G0280447 441 pelo "putative translation fac 0.491 0.380 0.455 8.8e-59
POMBASE|SPCC18B5.06 390 SPCC18B5.06 "peloto ortholog ( 0.444 0.389 0.5 3.3e-55
TAIR|locus:2085465395 AT3G58390 "AT3G58390" [Arabido 0.324 0.281 0.450 4.9e-55
FB|FBgn0011207 pelo "pelota" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 600 (216.3 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
 Identities = 116/152 (76%), Positives = 134/152 (88%)

Query:    85 KESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXXRVRTMLTISVESIDFDTQACV 144
             +ESEDMWHAYNLI +GDSVR++TIRKVQ           RVRT LTI+VESIDFDTQACV
Sbjct:    21 EESEDMWHAYNLIAKGDSVRSTTIRKVQNETATGSSTSSRVRTTLTIAVESIDFDTQACV 80

Query:   145 LRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAV 204
             LRLKGRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV
Sbjct:    81 LRLKGRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAV 140

Query:   205 MMQEGLANIMLITASMSLVRTKIETNIPRKRR 236
             +MQEGLA++ LITASM+LVR+KIE +IPRKR+
Sbjct:   141 VMQEGLAHVCLITASMTLVRSKIEVSIPRKRK 172
GO:0007283 "spermatogenesis" evidence=NAS;IMP
GO:0007140 "male meiosis" evidence=IMP
GO:0001745 "compound eye morphogenesis" evidence=IMP
GO:0051078 "meiotic nuclear envelope disassembly" evidence=IMP
GO:0048137 "spermatocyte division" evidence=IMP
GO:0000212 "meiotic spindle organization" evidence=IMP
GO:0007126 "meiosis" evidence=IMP
GO:0006412 "translation" evidence=ISS
GO:0008315 "meiotic G2/MI transition" evidence=TAS
GO:0007141 "male meiosis I" evidence=TAS
GO:0048749 "compound eye development" evidence=NAS
GO:0007054 "spindle assembly involved in male meiosis I" evidence=NAS
GO:0005634 "nucleus" evidence=NAS
GO:0007067 "mitosis" evidence=NAS
GO:0048132 "female germ-line stem cell division" evidence=IMP
GO:0030718 "germ-line stem cell maintenance" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
UNIPROTKB|F2Z5N9 PELO "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|H9L2N7 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H9L2N8 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZK01 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2145154 Pelo "pelota homolog (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1074 pelo "pelota homolog (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0280447 pelo "putative translation factor" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPCC18B5.06 SPCC18B5.06 "peloto ortholog (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2085465 AT3G58390 "AT3G58390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5XIP1PELO_RAT3, ., 1, ., -, ., -0.52590.75430.6701yesN/A
Q5RCE3PELO_PONAB3, ., 1, ., -, ., -0.53240.75430.6701yesN/A
Q80X73PELO_MOUSE3, ., 1, ., -, ., -0.52270.75430.6701yesN/A
Q9BRX2PELO_HUMAN3, ., 1, ., -, ., -0.54220.75430.6701yesN/A
Q5ZK01PELO_CHICK3, ., 1, ., -, ., -0.52270.75430.6701yesN/A
Q7ZWC4PELO_DANRE3, ., 1, ., -, ., -0.53740.75140.6675yesN/A
P48612PELO_DROME3, ., 1, ., -, ., -0.61360.75430.6531yesN/A
Q58DV0PELO_BOVIN3, ., 1, ., -, ., -0.52920.75430.6701yesN/A
P50444YNU6_CAEELNo assigned EC number0.47150.77770.6981yesN/A
Q9USL5DOM34_SCHPO3, ., 1, ., -, ., -0.42200.75430.6615yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
COG1537352 COG1537, PelA, Predicted RNA-binding proteins [Gen 1e-55
pfam03463133 pfam03463, eRF1_1, eRF1 domain 1 6e-37
TIGR00111351 TIGR00111, pelota, mRNA surveillance protein pelot 8e-34
pfam03463133 pfam03463, eRF1_1, eRF1 domain 1 4e-21
COG1537352 COG1537, PelA, Predicted RNA-binding proteins [Gen 3e-16
pfam03464129 pfam03464, eRF1_2, eRF1 domain 2 2e-10
TIGR00111351 TIGR00111, pelota, mRNA surveillance protein pelot 2e-09
pfam03465100 pfam03465, eRF1_3, eRF1 domain 3 2e-07
>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information 
 Score =  184 bits (470), Expect = 1e-55
 Identities = 83/306 (27%), Positives = 143/306 (46%), Gaps = 36/306 (11%)

Query: 73  IDFDTQACVLRLK-ES-EDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLT 130
           ++ D +  V++L  E+ +D+WH YN+I +GD V A T R+ +S     S    R+   L 
Sbjct: 4   LEEDKKRGVIKLVPETLDDLWHLYNIIEKGDKVFAKTTRRDESSDVIRSKKGERIPMTLG 63

Query: 131 ISVESIDFDTQACVLRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIE 190
           I VE I+FD  A  LR+KG  ++  + V  G+YHT+++ +  + E+ K EW+   LER++
Sbjct: 64  IKVEKIEFDKFANRLRIKGPIVEGPEEVVKGSYHTINVTIGTEIEIEKEEWNKDQLERLK 123

Query: 191 VACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDNKDLLKELLSPI- 249
            A    K  +VA V++ EG A I ++     ++  KI + IP KR  +    ++    I 
Sbjct: 124 EAVEASKRPEVAIVVVDEGEAAIAIVRDYGIIILGKIRSGIPGKREGDIRAERKFFDEIA 183

Query: 250 -TTVEAVKMDNKVL-----------------LENKSKFLLVHSSSAFKHSLKEILADPTV 291
               E   +D  ++                     +  ++  +S+  +  + E+L    V
Sbjct: 184 KALKEYANLDIIIVAGPGFAKEDFYDFLRERYPELANIVIEDTSTGGRAGINEVLKRGAV 243

Query: 292 TSKMQDTK---------------ALDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSD 336
              + +T+               A D  +  YG   V  A E  A++TLL+ D L R+ D
Sbjct: 244 DKILSETRIAEEIELVEEFLERLAKDDDKVAYGLEEVEKAAEYGAVETLLVTDELLRSDD 303

Query: 337 LNERKK 342
           + ER+ 
Sbjct: 304 VEERED 309

Length = 352
>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1 Back     alignment and domain information
>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota Back     alignment and domain information
>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1 Back     alignment and domain information
>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>gnl|CDD|217575 pfam03464, eRF1_2, eRF1 domain 2 Back     alignment and domain information
>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota Back     alignment and domain information
>gnl|CDD|146221 pfam03465, eRF1_3, eRF1 domain 3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 342
KOG2869|consensus379 100.0
TIGR00111351 pelota probable translation factor pelota. This mo 100.0
COG1537352 PelA Predicted RNA-binding proteins [General funct 100.0
PF03463132 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This do 100.0
TIGR00108409 eRF peptide chain release factor eRF/aRF, subunit 100.0
TIGR03676403 aRF1/eRF1 peptide chain release factor 1, archaeal 99.97
PRK04011411 peptide chain release factor 1; Provisional 99.97
COG1503411 eRF1 Peptide chain release factor 1 (eRF1) [Transl 99.85
KOG0688|consensus431 99.74
PF03464133 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This do 99.71
COG1537352 PelA Predicted RNA-binding proteins [General funct 99.06
PF03465113 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do 98.76
TIGR00111351 pelota probable translation factor pelota. This mo 98.4
PF03463132 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This do 97.97
KOG2869|consensus 379 97.97
>KOG2869|consensus Back     alignment and domain information 
Probab=100.00  E-value=2e-76  Score=555.41  Aligned_cols=278  Identities=63%  Similarity=0.926  Sum_probs=260.4

Q ss_pred             CeeeeecccCCCCceeEEEeeCCCcchhhhhhcccCCCEEEEEEEEEEeeccCCCCccceEEEEEEEEEEEEEeecccce
Q psy17307          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC   80 (342)
Q Consensus         1 Mk~~~~~~~~~~~~~~v~l~~e~~dDlw~lynli~~gD~v~~~t~Rkv~~~~~~g~~~~~~~~~~l~i~v~~~~f~~~~~   80 (342)
                      ||++++.+ .++++|.|+++||++|||||+||+|++||.|++.|.|||+.+.++|+++++|+.                 
T Consensus         1 MKli~K~~-~rng~G~vtmvpEe~eDmw~~ynli~~gD~v~a~T~rkvq~e~a~G~~~s~rv~-----------------   62 (379)
T KOG2869|consen    1 MKLIRKDI-ERNGSGSVTMVPEESEDLWHLYNLIQVGDSVIASTIRKVQKEEATGKTKSSRVL-----------------   62 (379)
T ss_pred             Cccchhhh-hcCCCceEEECcCchhHHHHHHhhccCCceeEEEEEEEeeeccccCcccceEEE-----------------
Confidence            99999998 999999999999999999999999999999999999999999888865544444                 


Q ss_pred             EEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeeccccccc
Q psy17307         81 VLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQENQYVKM  160 (342)
Q Consensus        81 ~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~~e~v~~  160 (342)
                                                                    ++|+|.||.++||..+..||++|+++++|++|++
T Consensus        63 ----------------------------------------------~~L~i~VesidfD~~~~~L~~KGrti~eNe~Vk~   96 (379)
T KOG2869|consen   63 ----------------------------------------------LKLKIKVESIDFDTKACVLRLKGRTIEENEYVKM   96 (379)
T ss_pred             ----------------------------------------------EEEEEEEEEeeccccccEEEEeeeeeeecccccc
Confidence                                                          7888888888888888999999999999999999


Q ss_pred             cceEEEEeecCceeEEEecCCChhhHHHHHHHhcccCCCcEEEEEEeCCeEEEEEEeCCeEEEEEEEEeecCCcccCcc-
Q psy17307        161 GAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDNK-  239 (342)
Q Consensus       161 G~~HTl~i~~~~~~~i~K~~W~~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ip~K~~~~~-  239 (342)
                      |+|||++|+++++|+|+|++||++.+++|++||++.+.+++|+|+|+||.|+||+++.+++..+++|+.++|+||+++. 
T Consensus        97 GaYHTidlel~r~FtL~K~ewds~al~~l~~A~dp~~~ad~aaVvlqEGla~IcLvt~s~tilr~kIe~siPrKr~~~~s  176 (379)
T KOG2869|consen   97 GAYHTIDLELNRPFTLRKEEWDSMALKLLKEACDPAPSADVAAVVLQEGLAHICLVTKSSTILRAKIEVSIPRKRKGDVS  176 (379)
T ss_pred             cceeEEEeccCCceEEEhhhchHHHHHHHHHhhCcccccceeeeehhcCceeEEEechhHHHHHHhhhcccccccCcchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987521 


Q ss_pred             -----------------------ccccee--eCCcc---------hHHHHhhccHHHHhcCCcEEEEecCCcchhHHHHH
Q psy17307        240 -----------------------DLLKEL--LSPIT---------TVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEI  285 (342)
Q Consensus       240 -----------------------~~~k~V--agPG~---------~k~~~~~~~~~~~~~k~k~v~~~~S~g~~~gL~Ev  285 (342)
                                             +++||+  |||||         ++++.+.+++.+++|++||+.+|+|+|+.++|+|+
T Consensus       177 ~~e~~l~kfye~V~qA~~k~v~fd~vk~~vvASpgF~~~~~~d~~~q~A~~~~~k~il~nk~kf~~~h~ssg~~hslnev  256 (379)
T KOG2869|consen  177 QHEEGLEKFYENVVQAILKHVNFDVVKCVVVASPGFVKDQFMDYLFQQAVKLDLKLILENKSKFPLVHASSGYKHSLNEV  256 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcceEEEEEEcCCchhHHHHHHHHHHHHHHhchhhhhhcccceeEEecCCchHHHHHHH
Confidence                                   568887  99995         45566778899999999999999999999999999


Q ss_pred             hcChhhhhhhhcccc---------------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCCCCCCchhhcC
Q psy17307        286 LADPTVTSKMQDTKA---------------LDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNERKK  342 (342)
Q Consensus       286 L~~~~v~~~l~d~k~---------------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~~~Rk~  342 (342)
                      |.+|.+.+.|+|+|+               ++|++||||++||.+|+|+|||++|||||++||+.|+++|++
T Consensus       257 L~dp~v~~~l~dtK~~~EvkalddF~~~l~~~~drA~yG~khV~~A~e~~AI~tLLitD~lfr~~DV~tRkk  328 (379)
T KOG2869|consen  257 LKDPAVASKLQDTKAAKEVKALDDFYVMLSKDPDRACYGPKHVEKANEYGAIETLLITDELFRSQDVATRKK  328 (379)
T ss_pred             hcChHHHHHhhchhhHHHHHHHHHHHHHhccCccccccCHHHHHHHHhhcchhheehhhhhcccccHHHHHH
Confidence            999999999999997               899999999999999999999999999999999999999985

>TIGR00111 pelota probable translation factor pelota Back     alignment and domain information
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1 Back     alignment and domain information
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>PRK04011 peptide chain release factor 1; Provisional Back     alignment and domain information
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0688|consensus Back     alignment and domain information
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>TIGR00111 pelota probable translation factor pelota Back     alignment and domain information
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>KOG2869|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
3mca_B390 Structure Of The Dom34-Hbs1 Complex And Implication 4e-58
2vgm_A386 Structure Of Yeast Dom34 : A Protein Related To Tra 5e-23
2vgn_A386 Structure Of Yeast Dom34 : A Protein Related To Tra 1e-22
3j15_A357 Model Of Ribosome-Bound Archaeal Pelota And Abce1 L 3e-11
1x52_A124 Solution Structures Of The C-Terminal Domain Of The 3e-08
2qi2_A347 Crystal Structure Of The Thermoplasma Acidophilum P 3e-06
3obw_A364 Crystal Structure Of Two Archaeal Pelotas Reveal In 6e-06
3oby_A352 Crystal Structure Of Archaeoglobus Fulgidus Pelota 1e-05
>pdb|3MCA|B Chain B, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 390 Back     alignment and structure 
Iteration: 1

 Score =  221 bits (563), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 126/308 (40%), Positives = 175/308 (56%), Gaps = 50/308 (16%)
Query: 85  KESEDMWHAYNLITEGDSVRASTIRKVQXXXXXXXXXXXRVRTMLTISVESIDFDTQACV 144
           +E EDMWH YN++  GD ++AST+R+V            RV   L I VE++DFDT+A  
Sbjct: 21  EEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTKAAQ 80
Query: 145 LRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAV 204
           L +KGR  + +  VKMG+YHTLDLEL+R F L K EWD+ AL+R++ ACN  + A++ AV
Sbjct: 81  LHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAV 140
Query: 205 MMQEGLANIMLITASMSLVRTKIETNIPRKRRDNKDLLKE-------------------- 244
           ++ EGLANI LIT  M+++R +I+  IPRKRR +    ++                    
Sbjct: 141 VLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFD 200
Query: 245 ------LLSPITTVE---------AVKMDNKVLLENKSKFLLVHSSSAFKHSLKEILADP 289
                 L SP              AVK+D K ++++K+KF+++HSS+   HSL EIL DP
Sbjct: 201 KLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEILKDP 260
Query: 290 TVTSKMQDTKAL---------------DPSRAFYGYRHVSAANESQAIDTLLIADCLFRN 334
            V SK+ DTK +               D  +A+YG  HV  A E  AI  LLI+D LFR+
Sbjct: 261 AVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRS 320
Query: 335 SDLNERKK 342
           SD+  RKK
Sbjct: 321 SDIATRKK 328
>pdb|2VGM|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-Go Decay. Length = 386 Back     alignment and structure
>pdb|2VGN|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-go Decay. Length = 386 Back     alignment and structure
>pdb|3J15|A Chain A, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 357 Back     alignment and structure
>pdb|1X52|A Chain A, Solution Structures Of The C-Terminal Domain Of The Human Pelota Homolog (Cgi-17) Length = 124 Back     alignment and structure
>pdb|2QI2|A Chain A, Crystal Structure Of The Thermoplasma Acidophilum Pelota Protein Length = 347 Back     alignment and structure
>pdb|3OBW|A Chain A, Crystal Structure Of Two Archaeal Pelotas Reveal Inter-Domain Structural Plasticity Length = 364 Back     alignment and structure
>pdb|3OBY|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Pelota Reveals Inter- Domain Structural Plasticity Length = 352 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 3e-66
2vgn_A386 DOM34; translation termination factor, protein bio 1e-63
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 2e-51
2qi2_A347 Pelota, cell division protein pelota related prote 1e-50
2qi2_A347 Pelota, cell division protein pelota related prote 1e-22
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 1e-50
3agj_B358 Protein pelota homolog; GTP binding, translation-h 2e-50
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 7e-50
3agk_A373 Peptide chain release factor subunit 1; translatio 2e-14
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 4e-10
3e20_C441 Eukaryotic peptide chain release factor subunit 1; 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390 Back     alignment and structure
 Score =  213 bits (542), Expect = 3e-66
 Identities = 128/311 (41%), Positives = 178/311 (57%), Gaps = 50/311 (16%)

Query: 82  LRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQ 141
           +  +E EDMWH YN++  GD ++AST+R+V     TGS++ SRV   L I VE++DFDT+
Sbjct: 18  MCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTK 77

Query: 142 ACVLRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADV 201
           A  L +KGR  + +  VKMG+YHTLDLEL+R F L K EWD+ AL+R++ ACN  + A++
Sbjct: 78  AAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEI 137

Query: 202 AAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDNKD--------------------- 240
            AV++ EGLANI LIT  M+++R +I+  IPRKRR +                       
Sbjct: 138 GAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEF 197

Query: 241 --------------LLKELLSPITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEIL 286
                          +   L       AVK+D K ++++K+KF+++HSS+   HSL EIL
Sbjct: 198 DFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEIL 257

Query: 287 ADPTVTSKMQDTK---------------ALDPSRAFYGYRHVSAANESQAIDTLLIADCL 331
            DP V SK+ DTK                 D  +A+YG  HV  A E  AI  LLI+D L
Sbjct: 258 KDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSL 317

Query: 332 FRNSDLNERKK 342
           FR+SD+  RKK
Sbjct: 318 FRSSDIATRKK 328
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386 Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358 Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357 Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373 Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Length = 124 Back     alignment and structure
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Length = 441 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 100.0
2vgn_A386 DOM34; translation termination factor, protein bio 100.0
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 100.0
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 100.0
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 100.0
3agj_B358 Protein pelota homolog; GTP binding, translation-h 100.0
2qi2_A347 Pelota, cell division protein pelota related prote 100.0
3e20_C441 Eukaryotic peptide chain release factor subunit 1; 99.98
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 99.97
3agk_A373 Peptide chain release factor subunit 1; translatio 99.94
3ir9_A166 Peptide chain release factor subunit 1; structural 99.37
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 99.28
2qi2_A347 Pelota, cell division protein pelota related prote 98.6
3agj_B358 Protein pelota homolog; GTP binding, translation-h 98.54
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 98.45
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 98.43
2vgn_A 386 DOM34; translation termination factor, protein bio 98.36
3mca_B 390 Protein DOM34, elongation factor 1 alpha-like prot 98.35
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 98.06
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 82.98
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=1.8e-72  Score=556.02  Aligned_cols=277  Identities=50%  Similarity=0.777  Sum_probs=220.1

Q ss_pred             CeeeeecccCCCCceeEEEeeCCCcchhhhhhcccCCCEEEEEEEEEEeeccCCCCccceEEEEEEEEEEEEEeecccce
Q psy17307          1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC   80 (342)
Q Consensus         1 Mk~~~~~~~~~~~~~~v~l~~e~~dDlw~lynli~~gD~v~~~t~Rkv~~~~~~g~~~~~~~~~~l~i~v~~~~f~~~~~   80 (342)
                      |||+++.+ .++++|+|+|+||++||||||||||++||.|+|+|+|||++++++|+.++                     
T Consensus         1 Mkl~~~~~-~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~---------------------   58 (390)
T 3mca_B            1 MKLIQKNI-EKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSG---------------------   58 (390)
T ss_dssp             -------C-BCC-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC---------------------------------
T ss_pred             Cccccccc-cCCCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCce---------------------
Confidence            99999999 89999999999999999999999999999999999999998776665444                     


Q ss_pred             EEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeeccccccc
Q psy17307         81 VLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQENQYVKM  160 (342)
Q Consensus        81 ~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~~e~v~~  160 (342)
                                                                +|++++|+|+||+++|||+++.||++|+++.+|+++++
T Consensus        59 ------------------------------------------~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~vk~   96 (390)
T 3mca_B           59 ------------------------------------------SRVVMKLRILVENMDFDTKAAQLHIKGRTTEYHPEVKM   96 (390)
T ss_dssp             --------------------------------------------------EECCCEEECTTSSCEEEC-CBCSCCC---C
T ss_pred             ------------------------------------------EEEEEEEEEEEEEEEecCCCCEEEEEEEEecCCccccc
Confidence                                                      44557888888888889999999999999999999999


Q ss_pred             cceEEEEeecCceeEEEecCCChhhHHHHHHHhcccCCCcEEEEEEeCCeEEEEEEeCCeEEEEEEEEeecCCcccC-cc
Q psy17307        161 GAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRD-NK  239 (342)
Q Consensus       161 G~~HTl~i~~~~~~~i~K~~W~~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ip~K~~~-~~  239 (342)
                      |+|||++|+||+||+|+|+||++|++++|++|++++.++++++|+||+|+|+||+|+++++++++++++++|+|+++ ++
T Consensus        97 G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~iPkK~~~gg~  176 (390)
T 3mca_B           97 GSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSS  176 (390)
T ss_dssp             CSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCEEEEEEEECCCCCCBTTBCH
T ss_pred             cceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEEEEEEEEEEeCCCcCCCCch
Confidence            99999999999999999999999999999999999988999999999999999999999999999999999999863 22


Q ss_pred             -----------------------ccccee--eCCcchHHHHhhcc---------HHHHhcCCcEEEEecCCcchhHHHHH
Q psy17307        240 -----------------------DLLKEL--LSPITTVEAVKMDN---------KVLLENKSKFLLVHSSSAFKHSLKEI  285 (342)
Q Consensus       240 -----------------------~~~k~V--agPG~~k~~~~~~~---------~~~~~~k~k~v~~~~S~g~~~gL~Ev  285 (342)
                                             ..+++|  |||||+++.|.+.+         +.+++++++|+++|+|+||++||+|+
T Consensus       177 ~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~~~~~k~~vv~~s~gg~~gl~Ev  256 (390)
T 3mca_B          177 AYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEI  256 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHHHHGGGEEEEECSCSSGGGGGTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhhhhcCeEEEEEcCCCcchhHHHH
Confidence                                   124565  99999988776432         33445678999999999999999999


Q ss_pred             hcChhhhhhhhcccc---------------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCCCCCCchhhc
Q psy17307        286 LADPTVTSKMQDTKA---------------LDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNERK  341 (342)
Q Consensus       286 L~~~~v~~~l~d~k~---------------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~~~Rk  341 (342)
                      |++|+++++|+++++               +|+++||||+++|.+|+++|||++|||+|++||++|+++|+
T Consensus       257 l~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~r~  327 (390)
T 3mca_B          257 LKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRSSDIATRK  327 (390)
T ss_dssp             SSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCCSCHHHHH
T ss_pred             HhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEecccccCCChhHHH
Confidence            999999999999986               78999999999999999999999999999999999988775
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Back     alignment and structure
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Back     alignment and structure
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 342
d2vgna1135 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae 3e-40
d2vgna1135 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae 3e-25
d2qi2a1126 b.38.4.1 (A:1-126) Cell division protein pelota {T 3e-40
d2qi2a1126 b.38.4.1 (A:1-126) Cell division protein pelota {T 2e-25
d2vgna2142 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisi 3e-30
d1x52a1111 d.79.3.2 (A:8-118) Cell division protein pelota {H 1e-08
d2vgna3104 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisi 9e-08
d2qi2a2117 c.55.4.2 (A:127-243) Cell division protein pelota 1e-06
d2qi2a395 d.79.3.2 (A:244-338) Cell division protein pelota 8e-06
d1dt9a2146 d.79.3.2 (A:277-422) C-terminal domain of eukaryot 9e-04
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 135 Back     information, alignment and structure

class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  136 bits (343), Expect = 3e-40
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 7/118 (5%)

Query: 82  LRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQ 141
           L  ++ ED++  Y ++ + D +        + +        S     L I V S DFD +
Sbjct: 20  LLPEDKEDLFTVYQIVDKDDELIFKKKFTSKLDE--AGKKKSTDLVKLKIKVISEDFDMK 77

Query: 142 ACVLRLKGRNIQE-----NQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACN 194
              L+ KG  + +     N  + +G Y +  L+    F + K  ++    + +  ACN
Sbjct: 78  DEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACN 135
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 135 Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 126 Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 126 Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 142 Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 104 Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 117 Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 95 Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
d2vgna1135 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 100.0
d2qi2a1126 Cell division protein pelota {Thermoplasma acidoph 100.0
d2vgna2142 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.9
d2qi2a2117 Cell division protein pelota {Thermoplasma acidoph 99.67
d1dt9a1134 Middle domain of eukaryotic peptide chain release 99.31
d1x52a1111 Cell division protein pelota {Human (Homo sapiens) 99.22
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.12
d2qi2a1126 Cell division protein pelota {Thermoplasma acidoph 98.77
d2qi2a395 Cell division protein pelota {Thermoplasma acidoph 98.69
d1dt9a2146 C-terminal domain of eukaryotic peptide chain rele 98.56
d2vgna1135 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 98.39
d1dt9a3138 N-terminal domain of eukaryotic peptide chain rele 94.12
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=9.5e-40  Score=275.68  Aligned_cols=128  Identities=24%  Similarity=0.415  Sum_probs=108.7

Q ss_pred             Ceeee--ecccCCCCceeEEEeeCCCcchhhhhhcccCCCEEEEEEEEEEeeccCCCCccceEEEEEEEEEEEEEeeccc
Q psy17307          1 MKLVH--KNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQ   78 (342)
Q Consensus         1 Mk~~~--~~~~~~~~~~~v~l~~e~~dDlw~lynli~~gD~v~~~t~Rkv~~~~~~g~~~~~~~~~~l~i~v~~~~f~~~   78 (342)
                      |||++  +.. ..+++|+|+|+||++||||||||||++||.|++.|.|+++.++..+                       
T Consensus         1 Mkli~~~k~~-~~~~~g~v~l~pE~~dDLW~LynlI~~GD~V~~~t~R~~~~~~~~~-----------------------   56 (135)
T d2vgna1           1 MKVISLKKDS-FNKGGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKLDEAGK-----------------------   56 (135)
T ss_dssp             CEEEEEEECS-SCTTCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC--------------------------------
T ss_pred             CeeEEeeccc-ccCCceEEEEEeCCHHHHHHHHHhccCCCEEEEEEEEEEecCCCCc-----------------------
Confidence            99998  444 6889999999999999999999999999999999999997643211                       


Q ss_pred             ceEEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeec----
Q psy17307         79 ACVLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQE----  154 (342)
Q Consensus        79 ~~~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~----  154 (342)
                                                                .++|++++|+|+|+++|||++++.||++|+++.+    
T Consensus        57 ------------------------------------------~~er~~~~L~I~Ve~~ef~~~~~~LRi~G~iv~e~~~~   94 (135)
T d2vgna1          57 ------------------------------------------KKSTDLVKLKIKVISEDFDMKDEYLKYKGVTVTDESGA   94 (135)
T ss_dssp             ----------------------------------------------CCEEEEEEEEEEEEETTTTEEEEEEEECCCTTSS
T ss_pred             ------------------------------------------cEEEEEEEEEEEEEEEEeecCCCEEEEeeeEEeccccc
Confidence                                                      2356678999999999999999999999999975    


Q ss_pred             -cccccccceEEEEeecCceeEEEecCCChhhHHHHHHHhc
Q psy17307        155 -NQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACN  194 (342)
Q Consensus       155 -~e~v~~G~~HTl~i~~~~~~~i~K~~W~~~~le~L~ea~~  194 (342)
                       |++|++|+|||++|++|++|+|+|++|+++++++|++||+
T Consensus        95 ~n~~v~~Gs~HTl~v~~~~~itI~K~~Wd~~~~~~L~eA~d  135 (135)
T d2vgna1          95 SNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACN  135 (135)
T ss_dssp             SSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTC
T ss_pred             ccccccccCcEEEEEcCCCeEEEEECCCCHHHHHHHHHhhC
Confidence             7899999999999999999999999999999999999985
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure