Psyllid ID: psy17330

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MFLAAGPDSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Secondary Structure (PSIPRED)
ccccccccccEEEcccccccccEEEEccccccccccEEEEEccccccccccccccccccccccccccccccEEEEEEccccccccccccccEEEEEEEEcHHHHHHHHccccccccccEEEEccccccccccccccccEEEEEEccEEEEEEEEEcccccccccccEEEEEccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEccccccccEEEEEEccccccccEEEEEEcccccccccEccEEcccccccccccccccEEEEEEccccccccccccHHEEEEEEEccHHHHHHHHHHcHHHccccEEEEEccccccEccccccccEEEEEEccEEEEEEEEEEcccccEccEcEEEEEHHHcHHHHHHHHH
Coil and Loop (DISEMBL)
mflaagpdsslhvipsisddshYQILHLEQrkkskackpsqlggvarlpgpagpgcslpwgefrldlssgglrgpgclgsvpgggplspklrhvqisvvdnpkcrqiFSNYGATINENILCAGvlsggkdscggdsggplmypldtkyYIIGVVSYGkkcaevgfpgvytRVTNYIQWIADNIS
Flexible Loop (DISEMBL)
MFLAAGPDSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Low Complexity Region (SEG)
MFLAAGPDSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRgpgclgsvpgggplspKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLsggkdscggdsggPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Disordered region (IsUnstruct)
************************I****************************PGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD***
Disordered Region (DISOPRED)
********SSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI*
Disordered Region (DISEMBL)
*********SLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Disordered Region (DISPRO)
******PDSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFLAAGPDSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
P21902	375	Proclotting enzyme OS=Tac	N/A	N/A	0.668	0.328	0.441	5e-24
Q27081	400	Clotting factor B OS=Tach	N/A	N/A	0.554	0.255	0.495	5e-22
P35047	256	Trypsin, alkaline C OS=Ma	N/A	N/A	0.543	0.390	0.457	5e-21
Q7M4I3	243	Venom protease OS=Megabom	N/A	N/A	0.510	0.386	0.510	2e-20
P35045	256	Trypsin, alkaline A OS=Ma	N/A	N/A	0.543	0.390	0.428	2e-19
P35046	256	Trypsin, alkaline B OS=Ma	N/A	N/A	0.543	0.390	0.428	4e-19
P39675	261	Mite allergen Der p 3 OS=	N/A	N/A	0.521	0.367	0.454	2e-18
Q8BZ10	417	Transmembrane protease se	yes	N/A	0.570	0.251	0.411	3e-18
P49275	259	Mite allergen Der f 3 OS=	N/A	N/A	0.516	0.366	0.489	3e-18
Q5QSK2	417	Transmembrane protease se	yes	N/A	0.543	0.239	0.421	4e-18

>sp|P21902|PCE_TACTR Proclotting enzyme OS=Tachypleus tridentatus PE=1 SV=1

 Score =  110 bits (275), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 6/129 (4%)

Query: 58  LPWGEFRLDLSSGGLRGPGCLG--SVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 115
           LP+ + R D     +R P   G  +    GP S  LR VQ+ + ++  CRQ +      I
Sbjct: 249 LPYRKLRYD--DLAMRKPFITGWGTTAFNGPSSAVLREVQLPIWEHEACRQAYEK-DLNI 305

Query: 116 NENILCAGVLSGGKDSCGGDSGGPLMYPLDT-KYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
               +CAG   GGKD+C GDSGGP+M P+ T ++Y+IG+VS+GKKCA  GFPGVYT+VT 
Sbjct: 306 TNVYMCAGFADGGKDACQGDSGGPMMLPVKTGEFYLIGIVSFGKKCALPGFPGVYTKVTE 365

Query: 175 YIQWIADNI 183
           ++ WIA+++
Sbjct: 366 FLDWIAEHM 374

This enzyme is closely associated with an endotoxin-sensitive hemolymph coagulation system in limulus. Its active form catalyzes the conversion of coagulogen to insoluble coagulin gel.
Tachypleus tridentatus (taxid: 6853)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 6

>sp|Q27081|CFB_TACTR Clotting factor B OS=Tachypleus tridentatus PE=1 SV=1

 Score =  103 bits (258), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 67/107 (62%), Gaps = 5/107 (4%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGAT-----INENILCAGVLSGGKDSCG 133
           G +   GP S  LR V I VV   KC Q +           I  N LCAG+  GGKD+C 
Sbjct: 282 GDLDFSGPRSQVLREVSIPVVPVDKCDQAYEKLNTPSLKNGITNNFLCAGLEEGGKDACQ 341

Query: 134 GDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIA 180
           GDSGGPLM   +T++ ++GVVS+G KCAE G+PGVY+RV +Y+ WIA
Sbjct: 342 GDSGGPLMLVNNTRWIVVGVVSFGHKCAEEGYPGVYSRVASYLDWIA 388

This enzyme is closely associated with an endotoxin-sensitive hemolymph coagulation system which may play important roles in both hemostasis and host defense mechanisms. Its active form catalyzes the activation of proclotting enzyme. Does not activate the mammalian coagulation factors factor IX, factor X, prothrombin, plasminogen, protein C or prekallikrein. Does not hydrolyze fibrinogen. Does not catalyze the activation of factor C or coagulogen.

Tachypleus tridentatus (taxid: 6853)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 5

>sp|P35047|TRYC_MANSE Trypsin, alkaline C OS=Manduca sexta PE=2 SV=1

 Score =  100 bits (250), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS-GGKDSCGGDSG 137
           G++  GGP S +LRHVQ+  V+   CR  +++ G T+ +N+LC+G L  GG+D C GDSG
Sbjct: 155 GAIRSGGPSSEQLRHVQVWTVNQATCRSRYASIGRTVTDNMLCSGWLDVGGRDQCQGDSG 214

Query: 138 GPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           GPL +       ++GV S+G++CA   FPGV  RVT Y  WI++N
Sbjct: 215 GPLYH----NGVVVGVCSWGEECALARFPGVNARVTRYTSWISNN 255

Manduca sexta (taxid: 7130)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 4

>sp|Q7M4I3|SP4_MEGPE Venom protease OS=Megabombus pennsylvanicus PE=1 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 67/98 (68%), Gaps = 4/98 (4%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G +   GPLS  L  VQ+ VV N  C++ +S+    +++ ++CAG   G KDSC GDSGG
Sbjct: 140 GRLRYKGPLSDALMEVQVPVVRNKVCKRAYSD----VSDTVICAGYPKGRKDSCQGDSGG 195

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 176
           PLM P ++ YY IGVVSYG +CA   +PGVYTRVT+Y+
Sbjct: 196 PLMIPQESTYYEIGVVSYGHECALPKYPGVYTRVTSYL 233

Megabombus pennsylvanicus (taxid: 28643)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P35045|TRYA_MANSE Trypsin, alkaline A OS=Manduca sexta PE=2 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 5/105 (4%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS-GGKDSCGGDSG 137
           G++  GGP S +LRHVQ+  V+   CR  +++ G ++ +N+LC+G L  GG+D C GDSG
Sbjct: 155 GAIRSGGPSSEQLRHVQVWTVNQATCRSRYASIGRSVTDNMLCSGWLDVGGRDQCQGDSG 214

Query: 138 GPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           GPL +       ++GV S+G++CA   FPGV  RV+ +  WI +N
Sbjct: 215 GPLYH----NGVVVGVCSWGEECALARFPGVNARVSRFANWIRNN 255

Manduca sexta (taxid: 7130)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 4

>sp|P35046|TRYB_MANSE Trypsin, alkaline B OS=Manduca sexta PE=2 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 5/105 (4%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS-GGKDSCGGDSG 137
           G +  GGP S +LRHVQ+  V+   CR  +++ G ++ +N+LC+G L  GG+D C GDSG
Sbjct: 155 GDIRSGGPPSEQLRHVQVWTVNQATCRSRYASIGRSVTDNMLCSGWLDVGGRDQCQGDSG 214

Query: 138 GPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           GPL +       ++GV S+G++CA   FPGV  RV+ +  WI +N
Sbjct: 215 GPLYH----NGVVVGVSSWGEECALARFPGVNARVSRFANWIRNN 255

Manduca sexta (taxid: 7130)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 4

>sp|P39675|DERP3_DERPT Mite allergen Der p 3 OS=Dermatophagoides pteronyssinus GN=DERP3 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 3/99 (3%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAG-VLSGGKDSCGGDSGGPL 140
            G   L  +LR V I+VV   +C +++S   A + +N++C G V +GGKDSC GDSGGP+
Sbjct: 159 EGSYSLPSELRRVDIAVVSRKECNELYSKANAEVTDNMICGGDVANGGKDSCQGDSGGPV 218

Query: 141 MYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           +   + +  ++G+VS+G  CA  G+PGVYTRV N+I WI
Sbjct: 219 VDVKNNQ--VVGIVSWGYGCARKGYPGVYTRVGNFIDWI 255

Dermatophagoides pteronyssinus (taxid: 6956)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8BZ10|TM11G_MOUSE Transmembrane protease serine 11G OS=Mus musculus GN=Tmprss11g PE=2 SV=2

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 2/107 (1%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G++   GP    L+ V+I ++ N  C Q+ + YG  I+  ++CAG L+G  D+C GDSGG
Sbjct: 311 GALKANGPFPNSLQEVEIEIISNDVCNQV-NVYGGAISSGMICAGFLTGKLDACEGDSGG 369

Query: 139 PLMYPLD-TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           PL+   +  K+Y++G+VS+G  C +   PG+YTRVT+Y  WI    S
Sbjct: 370 PLVISDNRNKWYLLGIVSWGIDCGKENKPGIYTRVTHYRDWIKSKTS 416

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P49275|DERF3_DERFA Mite allergen Der f 3 OS=Dermatophagoides farinae GN=DERF3 PE=1 SV=2

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 67/98 (68%), Gaps = 3/98 (3%)

Query: 83  GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAG-VLSGGKDSCGGDSGGPLM 141
           G   L  +L+ V I VV   +C Q++S  GA ++EN++C G V +GG DSC GDSGGP++
Sbjct: 158 GSYSLPSELQRVDIDVVSREQCDQLYSKAGADVSENMICGGDVANGGVDSCQGDSGGPVV 217

Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
             + TK  I+G+VS+G  CA  G+PGVYTRV N++ WI
Sbjct: 218 -DVATKQ-IVGIVSWGYGCARKGYPGVYTRVGNFVDWI 253

Dermatophagoides farinae (taxid: 6954)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q5QSK2|TM11G_RAT Transmembrane protease serine 11G OS=Rattus norvegicus GN=Tmprss11g PE=2 SV=1

 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G++   GP    L+ V+I ++ N  C Q+ + YG  I+  ++CAG L+G  D+C GDSGG
Sbjct: 311 GALKANGPFPNSLQEVEIEIISNDVCNQV-NVYGGAISSGMICAGFLTGKLDACEGDSGG 369

Query: 139 PLMYPLD-TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           PL+   +  K+Y++G+VS+G  C +   PG+YTRVT+Y  WI
Sbjct: 370 PLVISDNRNKWYLLGIVSWGIDCGKENKPGIYTRVTHYRNWI 411

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
193575579	393	PREDICTED: proclotting enzyme-like isofo	0.576	0.269	0.556	6e-30
56418413	605	hemolymph proteinase 17 [Manduca sexta]	0.570	0.173	0.5	2e-23
56418415	394	hemolymph proteinase 17 short form [Mand	0.570	0.266	0.5	4e-23
389612194	155	serine protease, partial [Papilio xuthus	0.570	0.677	0.526	7e-23
66507455	353	PREDICTED: venom protease [Apis mellifer	0.548	0.286	0.539	2e-22
129688	375	RecName: Full=Proclotting enzyme; Contai	0.668	0.328	0.441	2e-22
345480475	369	PREDICTED: proclotting enzyme [Nasonia v	0.570	0.284	0.5	3e-22
350417089	359	PREDICTED: venom protease-like [Bombus i	0.548	0.281	0.539	4e-22
156551354	351	PREDICTED: venom protease [Nasonia vitri	0.570	0.299	0.485	4e-22
112982842	390	clip domain serine protease 4 precursor	0.570	0.269	0.5	6e-22

>gi|193575579|ref|XP_001951870.1| PREDICTED: proclotting enzyme-like isoform 1 [Acyrthosiphon pisum] gi|328709820|ref|XP_003244077.1| PREDICTED: proclotting enzyme-like isoform 2 [Acyrthosiphon pisum] gi|328709822|ref|XP_003244078.1| PREDICTED: proclotting enzyme-like isoform 3 [Acyrthosiphon pisum]

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 84/106 (79%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           GS    GP S  L  VQ+ V+DN +C++ F+N  + I++ +LCAG+L+GGKD+C GDSGG
Sbjct: 286 GSTSFRGPSSTHLMEVQVPVMDNSECKRAFANKKSVIDDRVLCAGILTGGKDACQGDSGG 345

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           PLM+P  ++YY++GVVSYG KCAE G+PGVYTRV ++++WIADN++
Sbjct: 346 PLMWPSGSQYYLVGVVSYGFKCAEPGYPGVYTRVASFVEWIADNMN 391

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56418413|gb|AAV91014.1| hemolymph proteinase 17 [Manduca sexta]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 76/112 (67%), Gaps = 7/112 (6%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGAT-INENILCAGVLSGGKDSCGGDSG 137
           G++   GP +  L+ VQ+ VV N  C+Q + NY    I+E +LCAG  +GGKDSC GDSG
Sbjct: 490 GNLEARGPAATHLQVVQLPVVSNDYCKQAYRNYTQQKIDERVLCAGYKNGGKDSCRGDSG 549

Query: 138 GPLMYPL------DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           GPLM P+       T ++ IGVVS+GK CAE GFPGVY+RVTN++ W+ + +
Sbjct: 550 GPLMQPIWNSQSYKTYFFQIGVVSFGKGCAEAGFPGVYSRVTNFMPWLQEKV 601

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56418415|gb|AAV91015.1| hemolymph proteinase 17 short form [Manduca sexta]

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 76/112 (67%), Gaps = 7/112 (6%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGAT-INENILCAGVLSGGKDSCGGDSG 137
           G++   GP +  L+ VQ+ VV N  C+Q + NY    I+E +LCAG  +GGKDSC GDSG
Sbjct: 279 GNLEARGPAATHLQVVQLPVVSNDYCKQAYRNYTQQKIDERVLCAGYKNGGKDSCRGDSG 338

Query: 138 GPLMYPL------DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           GPLM P+       T ++ IGVVS+GK CAE GFPGVY+RVTN++ W+ + +
Sbjct: 339 GPLMQPIWNSQSYKTYFFQIGVVSFGKGCAEAGFPGVYSRVTNFMPWLQEKV 390

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389612194|dbj|BAM19612.1| serine protease, partial [Papilio xuthus]

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 73/112 (65%), Gaps = 7/112 (6%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGA-TINENILCAGVLSGGKDSCGGDSG 137
           GSV   GP +  L+ +Q+ VV N  C + +S Y   TI+E +LCAG   GG+DSC GDSG
Sbjct: 39  GSVSYRGPSASHLQALQLPVVSNEYCARAYSAYKEQTIDERVLCAGYELGGRDSCQGDSG 98

Query: 138 GPLMYP------LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           GPLM P        T  Y IGVVSYGK+CA+ GFPGVYTRVT +I WI + +
Sbjct: 99  GPLMQPVWNSKNFTTSMYQIGVVSYGKQCAQAGFPGVYTRVTQFIPWIQEKV 150

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66507455|ref|XP_623069.1| PREDICTED: venom protease [Apis mellifera]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNY-GATINENILCAGVLSGGKDSCGGDSG 137
           GS    GP S  L  +Q+ V++N +C+Q +S +  A I+  +LCA    GGKD+C GDSG
Sbjct: 247 GSTETRGPASDILLEIQLPVINNEQCKQAYSKFKAAEIDNRVLCAAYRQGGKDACQGDSG 306

Query: 138 GPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           GPLM P    YY IGVVSYG KCAE GFPGVYTRVT ++ +I
Sbjct: 307 GPLMLPQHWYYYQIGVVSYGYKCAEPGFPGVYTRVTAFLDFI 348

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|129688|sp|P21902.1|PCE_TACTR RecName: Full=Proclotting enzyme; Contains: RecName: Full=Proclotting enzyme light chain; Contains: RecName: Full=Proclotting enzyme heavy chain; Flags: Precursor gi|161658|gb|AAA30094.1| proclotting enzyme [Tachypleus tridentatus]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 6/129 (4%)

Query: 58  LPWGEFRLDLSSGGLRGPGCLG--SVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 115
           LP+ + R D     +R P   G  +    GP S  LR VQ+ + ++  CRQ +      I
Sbjct: 249 LPYRKLRYD--DLAMRKPFITGWGTTAFNGPSSAVLREVQLPIWEHEACRQAYEK-DLNI 305

Query: 116 NENILCAGVLSGGKDSCGGDSGGPLMYPLDT-KYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
               +CAG   GGKD+C GDSGGP+M P+ T ++Y+IG+VS+GKKCA  GFPGVYT+VT 
Sbjct: 306 TNVYMCAGFADGGKDACQGDSGGPMMLPVKTGEFYLIGIVSFGKKCALPGFPGVYTKVTE 365

Query: 175 YIQWIADNI 183
           ++ WIA+++
Sbjct: 366 FLDWIAEHM 374

Source: Tachypleus tridentatus

Species: Tachypleus tridentatus

Genus: Tachypleus

Family: Limulidae

Order: Xiphosura

Class: Merostomata

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480475|ref|XP_001602546.2| PREDICTED: proclotting enzyme [Nasonia vitripennis]

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGA-TINENILCAGVLSGGKDSCGGDSG 137
           GS+   GP S  L+ VQ+ VV N  C + F+ +    I+E ++CAG  +GGKD+C GDSG
Sbjct: 263 GSLYFHGPASAVLQEVQLPVVTNEACHKAFAPFKKQVIDERVMCAGYTTGGKDACQGDSG 322

Query: 138 GPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           G LM+P    YY IG+VS+G +CAE GFPGVYTRVT+++ +I  N+
Sbjct: 323 GALMFPKGPNYYAIGIVSFGFRCAEAGFPGVYTRVTHFLDFIQANL 368

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417089|ref|XP_003491251.1| PREDICTED: venom protease-like [Bombus impatiens]

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 70/102 (68%), Gaps = 1/102 (0%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYG-ATINENILCAGVLSGGKDSCGGDSG 137
           GSV   GP S  L  VQ+ VV N +C+  ++ +  A + +N+LCAG   GGKD+C GDSG
Sbjct: 253 GSVGHHGPGSDDLMEVQVPVVSNTECKNSYARFATAHVTDNVLCAGYTQGGKDACQGDSG 312

Query: 138 GPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           GPLM P    +Y IGVVSYG KCA  G+PGVYTRVT+Y+ +I
Sbjct: 313 GPLMLPKKFTFYQIGVVSYGFKCAAAGYPGVYTRVTSYLDFI 354

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551354|ref|XP_001602600.1| PREDICTED: venom protease [Nasonia vitripennis]

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 72/105 (68%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G+    G  S  L+ VQ+ VV N +C++ ++     I+E +LCAG  +GGKD+C GDSGG
Sbjct: 246 GATSYEGEESDVLQEVQVPVVSNEQCKKDYAAKRVVIDERVLCAGWPNGGKDACQGDSGG 305

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PLM+P  T YY+IGVVS G KCA   FPG+Y+RVT+++ +I  N+
Sbjct: 306 PLMWPKQTTYYLIGVVSTGSKCATAQFPGIYSRVTHFLNFIISNM 350

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112982842|ref|NP_001036891.1| clip domain serine protease 4 precursor [Bombyx mori] gi|20372973|dbj|BAB91156.1| serine protease [Bombyx mori]

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 73/112 (65%), Gaps = 7/112 (6%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNY-GATINENILCAGVLSGGKDSCGGDSG 137
           G     GP +  L+ +Q+ VV N  C Q +S Y    I+E +LCAG   GGKD+C GDSG
Sbjct: 275 GDTEFRGPSATHLQVLQLPVVSNDFCAQAYSPYKNQKIDERVLCAGYKKGGKDACQGDSG 334

Query: 138 GPLMYPL------DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           GPLM P+       T +Y IGVVS+GKKCAE GFPGVY+RVT+++ WI + +
Sbjct: 335 GPLMQPIWNSQTYKTYFYQIGVVSFGKKCAEAGFPGVYSRVTHFVPWIQEKV 386

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
UNIPROTKB|E1BZN8	569	HGFAC "Uncharacterized protein	0.505	0.163	0.372	1.3e-13
UNIPROTKB|E1BJM8	417	LOC518437 "Uncharacterized pro	0.478	0.211	0.377	1.1e-12
FB|FBgn0038727	721	CG7432 [Drosophila melanogaste	0.478	0.122	0.395	1.1e-12
UNIPROTKB|J9P5A1	107	J9P5A1 "Uncharacterized protei	0.478	0.822	0.355	1.9e-12
RGD|70909	653	Hgfac "HGF activator" [Rattus	0.472	0.133	0.363	4.8e-12
UNIPROTKB|Q28661	458	PROC "Vitamin K-dependent prot	0.489	0.196	0.311	6.6e-12
MGI|MGI:2444058	417	Tmprss11g "transmembrane prote	0.505	0.223	0.347	6.6e-12
UNIPROTKB|F1RUS4	417	LOC100738056 "Uncharacterized	0.478	0.211	0.355	8.5e-12
UNIPROTKB|E1BCW0	297	HGFAC "Uncharacterized protein	0.847	0.525	0.289	9e-12
MGI|MGI:1918253	322	Prss41 "protease, serine, 41"	0.483	0.276	0.329	9.2e-12

UNIPROTKB|E1BZN8 HGFAC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 35/94 (37%), Positives = 47/94 (50%)

Query:    91 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
             L+   I ++   KCR     YG  I+EN+ CAG               PL    +   Y+
Sbjct:   472 LQETLIPLIPEEKCRSP-EIYGTEISENMFCAGYFDSKSDACQGDSGGPLACEKNEISYL 530

Query:   151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
              GV+S+G  C  V  PGVYTRVTNY+ WI + I+
Sbjct:   531 YGVISWGDGCGRVNKPGVYTRVTNYVNWINERIA 564

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

UNIPROTKB|E1BJM8 LOC518437 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 34/90 (37%), Positives = 49/90 (54%)

Query:    91 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK-YY 149
             LR V++ ++ N  C QI   YG  ++  ++CAG L             PL+ P D   +Y
Sbjct:   323 LREVEVEIISNDICNQIHV-YGGAVSSGMICAGFLKGKLDACEGDSGGPLVIPRDGNIWY 381

Query:   150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
             +IG+VS+G  C +   PGVYT+VT Y  WI
Sbjct:   382 LIGIVSWGMDCGKENKPGVYTKVTRYRDWI 411

GO:0006508 "proteolysis" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

FB|FBgn0038727 CG7432 [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 36/91 (39%), Positives = 49/91 (53%)

Query:    92 RHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYII 151
             R  ++ +  N  C +   +Y   INEN +CAG               PLM   D+ +  +
Sbjct:   631 RQAELPIWRNEDCDR---SYFQPINENFICAGYSDGGVDACQGDSGGPLMMRYDSHWVQL 687

Query:   152 GVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
             GVVS+G KC E G+PGVYTRVT Y+ WI D+
Sbjct:   688 GVVSFGNKCGEPGYPGVYTRVTEYLDWIRDH 718

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

UNIPROTKB|J9P5A1 J9P5A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 32/90 (35%), Positives = 48/90 (53%)

Query:    91 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK-YY 149
             LR V++ ++ N  C Q+   YG  ++  ++CAG L             PL+   D   +Y
Sbjct:    13 LRQVEVEIISNDICNQVHV-YGGAVSSGMICAGFLTGKRDACEGDSGGPLVIARDRSIWY 71

Query:   150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
             +IG+VS+G  C +   PG+YTRVT Y  WI
Sbjct:    72 LIGIVSWGIDCGKKNKPGLYTRVTRYRDWI 101

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

RGD|70909 Hgfac "HGF activator" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
 Identities = 32/88 (36%), Positives = 46/88 (52%)

Query:    96 ISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVS 155
             + +V + KC      YGA I+ N+LCAG               PL+   +   Y+ G++S
Sbjct:   557 VPLVADHKCSSP-EVYGADISPNMLCAGYFDCKSDACQGDSGGPLVCEKNGVAYLYGIIS 615

Query:   156 YGKKCAEVGFPGVYTRVTNYIQWIADNI 183
             +G  C  +  PGVYTRV+NY+ WI D I
Sbjct:   616 WGDGCGRLNKPGVYTRVSNYVDWINDRI 643

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005791 "rough endoplasmic reticulum" evidence=IEA;ISO

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q28661 PROC "Vitamin K-dependent protein C" [Oryctolagus cuniculus (taxid:9986)]

 Score = 153 (58.9 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
 Identities = 29/93 (31%), Positives = 51/93 (54%)

Query:    91 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
             L  + + V    +C Q+ SN    I+EN+LCAG+L             P++      +++
Sbjct:   357 LNFITVPVAPQNECEQVMSNI---ISENMLCAGILGDRRDACDGDSGGPMVASFRGTWFL 413

Query:   151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
             +G+VS+G+ C ++   GVYT+V+ Y+ WI  +I
Sbjct:   414 VGLVSWGEGCGDLNNYGVYTKVSRYLDWIHSHI 446

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

MGI|MGI:2444058 Tmprss11g "transmembrane protease, serine 11g" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 6.6e-12, P = 6.6e-12
 Identities = 33/95 (34%), Positives = 52/95 (54%)

Query:    91 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLD-TKYY 149
             L+ V+I ++ N  C Q+ + YG  I+  ++CAG L             PL+   +  K+Y
Sbjct:   323 LQEVEIEIISNDVCNQV-NVYGGAISSGMICAGFLTGKLDACEGDSGGPLVISDNRNKWY 381

Query:   150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
             ++G+VS+G  C +   PG+YTRVT+Y  WI    S
Sbjct:   382 LLGIVSWGIDCGKENKPGIYTRVTHYRDWIKSKTS 416

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1RUS4 LOC100738056 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 8.5e-12, P = 8.5e-12
 Identities = 32/90 (35%), Positives = 49/90 (54%)

Query:    91 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK-YY 149
             LR V++ ++ N  C ++ S YG  ++  ++CAG L             PL+   D   +Y
Sbjct:   323 LREVEVEIISNDICNRV-SVYGGAVSSRMICAGFLRGKLDACEGDSGGPLVIARDRNIWY 381

Query:   150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
             +IG+VS+G  C +   PGVYT+VT Y  WI
Sbjct:   382 LIGIVSWGMDCGKENKPGVYTKVTGYRDWI 411

GO:0006508 "proteolysis" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|E1BCW0 HGFAC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 49/169 (28%), Positives = 72/169 (42%)

Query:    16 SISDDSHYQILHLEQRKKSKACKP-SQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRX 74
             S+ + S + ++ +   KK + C   SQ      LP P   G S P G  +  ++  G + 
Sbjct:   131 SVFNPSDHDLVLIRLEKKGERCAVRSQFVQPICLPEP---GSSFPPGH-KCQIAGWGHQD 186

Query:    75 XXXXXXXXXXXXXXXKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXX 134
                             LR   + +V + KC      YGA I+ N+LCAG           
Sbjct:   187 ENVSGYSPS-------LREALVPLVADHKCSSP-EVYGADISPNMLCAGYFDCRSDACQG 238

Query:   135 XXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
                 PL    +   Y+ G++S+G  C  +  PGVYTRV NY+ WI D I
Sbjct:   239 DSGGPLACEKNGVAYLYGIISWGDGCGRLNKPGVYTRVANYVDWINDRI 287

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

MGI|MGI:1918253 Prss41 "protease, serine, 41" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 9.2e-12, P = 9.2e-12
 Identities = 30/91 (32%), Positives = 50/91 (54%)

Query:    91 LRHVQISVVDNPKCRQIFSNYGA--TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKY 148
             LR VQ+S+++N +C+++F  +     I +++ CAG               PL+  +D  +
Sbjct:   199 LREVQVSILNNSRCQELFEIFSLHHLITKDVFCAGAEDGSADTCSGDSGGPLVCNMDGLW 258

Query:   149 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
             Y IG+VS+G  C     PG+YT V++Y  WI
Sbjct:   259 YQIGIVSWGIGCGRPNLPGIYTNVSHYYNWI 289

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0043229 "intracellular organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	184
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	1e-36
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	2e-35
pfam00089	218	pfam00089, Trypsin, Trypsin	2e-23
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	9e-13

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score =  126 bits (319), Expect = 1e-36
 Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G    GGPL   L+ V + +V N +C++ +S YG TI +N+LCAG L GGKD+C GDSGG
Sbjct: 130 GRTSEGGPLPDVLQEVNVPIVSNAECKRAYS-YGGTITDNMLCAGGLEGGKDACQGDSGG 188

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           PL+   + +  ++G+VS+G  CA   +PGVYTRV++Y+ WI   
Sbjct: 189 PLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT 232

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score =  123 bits (310), Expect = 2e-35
 Identities = 48/98 (48%), Positives = 66/98 (67%), Gaps = 2/98 (2%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
            G G L   L+ V + +V N  CR+ +S  G  I +N+LCAG L GGKD+C GDSGGPL+
Sbjct: 134 EGAGSLPDTLQEVNVPIVSNATCRRAYSGGG-AITDNMLCAGGLEGGKDACQGDSGGPLV 192

Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
              D ++ ++G+VS+G  CA  G PGVYTRV++Y+ WI
Sbjct: 193 C-NDGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score = 92.1 bits (229), Expect = 2e-23
 Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 8/93 (8%)

Query: 87  LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDT 146
           L   L+ V + VV    CR   S YG T+ +N++CAG  +GGKD+C GDSGGPL+     
Sbjct: 134 LPDTLQEVTVPVVSRETCR---SAYGGTVTDNMICAG--AGGKDACQGDSGGPLVCSDG- 187

Query: 147 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
              +IG+VS+G  CA   +PGVYT V++Y+ WI
Sbjct: 188 --ELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 218

Length = 218

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 65.3 bits (159), Expect = 9e-13
 Identities = 39/107 (36%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENIL---CAGVLSGGKDSCGGD 135
             VP   P    L  V +  V    C Q      A+     L   CAG     KD+C GD
Sbjct: 172 SDVPRSSPKGTILHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAG--RPPKDACQGD 229

Query: 136 SGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIAD 181
           SGGP+ +  +      GVVS+G   C     PGVYT V+NY  WIA 
Sbjct: 230 SGGPIFHKGEEGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAA 276

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
KOG3627|consensus	256		100.0
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	99.97
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	99.95
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	99.93
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.75
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	98.72
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	97.61
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	94.48
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	94.35
PRK10139	455	serine endoprotease; Provisional	94.07
PRK10898	353	serine endoprotease; Provisional	94.05
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	92.9
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	92.34
PRK10942	473	serine endoprotease; Provisional	91.53

>KOG3627|consensus

Probab=100.00  E-value=1.5e-31  Score=206.46  Aligned_cols=162  Identities=33%  Similarity=0.697  Sum_probs=136.0

Q ss_pred             CCceEEEcCCCCC---C-CCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD---D-SHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~-~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      .+.++++||+|+.   . +|||||+|.+++.              |+++|+||| ||..........+..|+++|||.+.
T Consensus        88 ~v~~~i~H~~y~~~~~~~nDiall~l~~~v~--------------~~~~i~pic-lp~~~~~~~~~~~~~~~v~GWG~~~  152 (256)
T KOG3627|consen   88 DVEKIIVHPNYNPRTLENNDIALLRLSEPVT--------------FSSHIQPIC-LPSSADPYFPPGGTTCLVSGWGRTE  152 (256)
T ss_pred             eeeEEEECCCCCCCCCCCCCEEEEEECCCcc--------------cCCcccccC-CCCCcccCCCCCCCEEEEEeCCCcC
Confidence            4568889999966   3 8999999999988              999999999 7754433234555899999999987


Q ss_pred             CC-CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC-C
Q psy17330         83 GG-GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-C  160 (184)
Q Consensus        83 ~~-~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~-c  160 (184)
                      .. ...+..|++.++++++.++|...+... ..+++.++|++......+.|+||+||||++..+++|+|+||+|||.. |
T Consensus       153 ~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~-~~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~~~~~~~GivS~G~~~C  231 (256)
T KOG3627|consen  153 SGGGPLPDTLQEVDVPIISNSECRRAYGGL-GTITDTMLCAGGPEGGKDACQGDSGGPLVCEDNGRWVLVGIVSWGSGGC  231 (256)
T ss_pred             CCCCCCCceeEEEEEeEcChhHhcccccCc-cccCCCEEeeCccCCCCccccCCCCCeEEEeeCCcEEEEEEEEecCCCC
Confidence            65 245778999999999999999988621 14667789998556677789999999999998889999999999988 9


Q ss_pred             CCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        161 AEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       161 ~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .....|++||||+.|.+||++.+.
T Consensus       232 ~~~~~P~vyt~V~~y~~WI~~~~~  255 (256)
T KOG3627|consen  232 GQPNYPGVYTRVSSYLDWIKENIG  255 (256)
T ss_pred             CCCCCCeEEeEhHHhHHHHHHHhc
Confidence            987799999999999999998763

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=99.97  E-value=3.8e-31  Score=200.13  Aligned_cols=158  Identities=38%  Similarity=0.758  Sum_probs=136.3

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||.|+.   .+|||||||++++.              ++.++.||| ||...  .....+..+.++|||....
T Consensus        72 ~v~~~~~hp~y~~~~~~~DiAll~L~~~~~--------------~~~~v~pic-l~~~~--~~~~~~~~~~~~G~g~~~~  134 (232)
T cd00190          72 KVKKVIVHPNYNPSTYDNDIALLKLKRPVT--------------LSDNVRPIC-LPSSG--YNLPAGTTCTVSGWGRTSE  134 (232)
T ss_pred             EEEEEEECCCCCCCCCcCCEEEEEECCccc--------------CCCcccceE-CCCcc--ccCCCCCEEEEEeCCcCCC
Confidence            5789999999976   57999999999998              889999999 77553  3456789999999998766


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .......++...+.+++.++|.+.+.. ...+.++++|+.........|.||+||||++..+++|+|+||.|++..|...
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~lvGI~s~g~~c~~~  213 (232)
T cd00190         135 GGPLPDVLQEVNVPIVSNAECKRAYSY-GGTITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARP  213 (232)
T ss_pred             CCCCCceeeEEEeeeECHHHhhhhccC-cccCCCceEeeCCCCCCCccccCCCCCcEEEEeCCEEEEEEEEehhhccCCC
Confidence            545677899999999999999988763 3467899999985444778999999999999999999999999999888866


Q ss_pred             CCCeEEEeCcchHHHHHhh
Q psy17330        164 GFPGVYTRVTNYIQWIADN  182 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~  182 (184)
                      +.|.+||+|+.|.+||+++
T Consensus       214 ~~~~~~t~v~~~~~WI~~~  232 (232)
T cd00190         214 NYPGVYTRVSSYLDWIQKT  232 (232)
T ss_pred             CCCCEEEEcHHhhHHhhcC
Confidence            7799999999999999874

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=99.95  E-value=4.8e-27  Score=177.84  Aligned_cols=155  Identities=37%  Similarity=0.749  Sum_probs=130.5

Q ss_pred             CCCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          6 GPDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         6 ~~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      -.+.++++||.|+.   .+|||||+|++++.              +++.++|+| ||..+  .....+..+.++|||...
T Consensus        71 ~~v~~~~~~p~~~~~~~~~DiAll~L~~~i~--------------~~~~~~pi~-l~~~~--~~~~~~~~~~~~g~g~~~  133 (229)
T smart00020       71 IKVSKVIIHPNYNPSTYDNDIALLKLKSPVT--------------LSDNVRPIC-LPSSN--YNVPAGTTCTVSGWGRTS  133 (229)
T ss_pred             EeeEEEEECCCCCCCCCcCCEEEEEECcccC--------------CCCceeecc-CCCcc--cccCCCCEEEEEeCCCCC
Confidence            35788999999974   66999999999998              888999999 77542  234568899999999876


Q ss_pred             C-CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC
Q psy17330         83 G-GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA  161 (184)
Q Consensus        83 ~-~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~  161 (184)
                      . .+.....++...+++++.++|...+.. ...+.+.++|+++.......|.+|+|+||++..+ +|+|+||.|++..|.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~-~~~l~Gi~s~g~~C~  211 (229)
T smart00020      134 EGAGSLPDTLQEVNVPIVSNATCRRAYSG-GGAITDNMLCAGGLEGGKDACQGDSGGPLVCNDG-RWVLVGIVSWGSGCA  211 (229)
T ss_pred             CCCCcCCCEeeEEEEEEeCHHHhhhhhcc-ccccCCCcEeecCCCCCCcccCCCCCCeeEEECC-CEEEEEEEEECCCCC
Confidence            4 234466888999999999999987762 2367899999985444678999999999999988 999999999999898


Q ss_pred             CCCCCeEEEeCcchHHHH
Q psy17330        162 EVGFPGVYTRVTNYIQWI  179 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI  179 (184)
                      ..+.|.+|+||+.|.+||
T Consensus       212 ~~~~~~~~~~i~~~~~WI  229 (229)
T smart00020      212 RPGKPGVYTRVSSYLDWI  229 (229)
T ss_pred             CCCCCCEEEEeccccccC
Confidence            667899999999999998

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.93  E-value=2.9e-25  Score=166.69  Aligned_cols=148  Identities=34%  Similarity=0.695  Sum_probs=125.9

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+++++.||+|+.   .+|||||||++++.              +.+.+.|+| ++...  .....+..+.+.||+....
T Consensus        70 ~v~~~~~h~~~~~~~~~~DiAll~L~~~~~--------------~~~~~~~~~-l~~~~--~~~~~~~~~~~~G~~~~~~  132 (220)
T PF00089_consen   70 KVSKIIIHPKYDPSTYDNDIALLKLDRPIT--------------FGDNIQPIC-LPSAG--SDPNVGTSCIVVGWGRTSD  132 (220)
T ss_dssp             EEEEEEEETTSBTTTTTTSEEEEEESSSSE--------------HBSSBEESB-BTSTT--HTTTTTSEEEEEESSBSST
T ss_pred             cccccccccccccccccccccccccccccc--------------ccccccccc-ccccc--ccccccccccccccccccc
Confidence            5678899999976   45999999999987              888999999 66422  2346789999999998765


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+ ....++...+.+++.+.|...+.   ..+.+.++|+... .....|.||+||||++..+   +|+||.+++..|...
T Consensus       133 ~~-~~~~~~~~~~~~~~~~~c~~~~~---~~~~~~~~c~~~~-~~~~~~~g~sG~pl~~~~~---~lvGI~s~~~~c~~~  204 (220)
T PF00089_consen  133 NG-YSSNLQSVTVPVVSRKTCRSSYN---DNLTPNMICAGSS-GSGDACQGDSGGPLICNNN---YLVGIVSFGENCGSP  204 (220)
T ss_dssp             TS-BTSBEEEEEEEEEEHHHHHHHTT---TTSTTTEEEEETT-SSSBGGTTTTTSEEEETTE---EEEEEEEEESSSSBT
T ss_pred             cc-ccccccccccccccccccccccc---ccccccccccccc-cccccccccccccccccee---eecceeeecCCCCCC
Confidence            55 55688899999999999998754   4588999999844 5678999999999999975   799999999889887


Q ss_pred             CCCeEEEeCcchHHHH
Q psy17330        164 GFPGVYTRVTNYIQWI  179 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI  179 (184)
                      +.|.+|+||+.|.+||
T Consensus       205 ~~~~v~~~v~~~~~WI  220 (220)
T PF00089_consen  205 NYPGVYTRVSSYLDWI  220 (220)
T ss_dssp             TSEEEEEEGGGGHHHH
T ss_pred             CcCEEEEEHHHhhccC
Confidence            7799999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2.6e-17  Score=128.34  Aligned_cols=163  Identities=26%  Similarity=0.383  Sum_probs=113.7

Q ss_pred             cCCCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeeccc
Q psy17330          5 AGPDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         5 ~~~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~   81 (184)
                      .+.+-+|+.|..|..   .||+|+++|+++...+....-..++...+               ..++.........+|+.+
T Consensus       105 rg~vr~i~~~efY~~~n~~ND~Av~~l~~~a~~pr~ki~~~~~sdt~---------------l~sv~~~s~~~n~t~~~~  169 (413)
T COG5640         105 RGHVRTIYVHEFYSPGNLGNDIAVLELARAASLPRVKITSFDASDTF---------------LNSVTTVSPMTNGTFGVT  169 (413)
T ss_pred             CcceEEEeeecccccccccCcceeeccccccccchhheeeccCcccc---------------eecccccccccceeeeee
Confidence            456778999999965   55999999999776332221111111100               111222223344566544


Q ss_pred             CCC---CCCC--cCceEEEEEeeCcccccccccc---cCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEE
Q psy17330         82 PGG---GPLS--PKLRHVQISVVDNPKCRQIFSN---YGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGV  153 (184)
Q Consensus        82 ~~~---~~~~--~~l~~~~~~~~~~~~C~~~~~~---~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi  153 (184)
                      ...   +..+  ..++...+..++...|..++..   -+....-.-+|++  ....+.|+||+|||++.+.+....++||
T Consensus       170 ~~~~v~~~~p~gt~l~e~~v~fv~~stc~~~~g~an~~dg~~~lT~~cag--~~~~daCqGDSGGPi~~~g~~G~vQ~GV  247 (413)
T COG5640         170 TPSDVPRSSPKGTILHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAG--RPPKDACQGDSGGPIFHKGEEGRVQRGV  247 (413)
T ss_pred             eecCCCCCCCccceeeeeeeeeechHHhhhhccccccCCCCCCccceecC--CCCcccccCCCCCceEEeCCCccEEEeE
Confidence            322   1112  4788999999999999988742   1112222239998  5558999999999999998888899999


Q ss_pred             EEecCC-CCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        154 VSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       154 ~s~~~~-c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +|||.+ |+.+..|+|||+|+.|.+||..+++
T Consensus       248 vSwG~~~Cg~t~~~gVyT~vsny~~WI~a~~~  279 (413)
T COG5640         248 VSWGDGGCGGTLIPGVYTNVSNYQDWIAAMTN  279 (413)
T ss_pred             EEecCCCCCCCCcceeEEehhHHHHHHHHHhc
Confidence            999998 9999999999999999999998763

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=98.72  E-value=2.7e-07  Score=72.40  Aligned_cols=118  Identities=25%  Similarity=0.387  Sum_probs=78.5

Q ss_pred             CCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEE
Q psy17330         18 SDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQIS   97 (184)
Q Consensus        18 ~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~   97 (184)
                      ....+++||+|+++                +.....|+| ||...  .....+....+.|+       .....+....+.
T Consensus       158 ~~~~~~mIlEl~~~----------------~~~~~~~~C-l~~~~--~~~~~~~~~~~yg~-------~~~~~~~~~~~~  211 (282)
T PF03761_consen  158 NRPYSPMILELEED----------------FSKNVSPPC-LADSS--TNWEKGDEVDVYGF-------NSTGKLKHRKLK  211 (282)
T ss_pred             ccccceEEEEEccc----------------ccccCCCEE-eCCCc--cccccCceEEEeec-------CCCCeEEEEEEE
Confidence            34559999999988                235689999 77544  33455666666676       122334455555


Q ss_pred             eeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHH
Q psy17330         98 VVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ  177 (184)
Q Consensus        98 ~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~  177 (184)
                      +.....                 |..........|.+|.||||+...+|+|+|+||.+.+...+..+ ...|.+|+.|.+
T Consensus       212 i~~~~~-----------------~~~~~~~~~~~~~~d~Gg~lv~~~~gr~tlIGv~~~~~~~~~~~-~~~f~~v~~~~~  273 (282)
T PF03761_consen  212 ITNCTK-----------------CAYSICTKQYSCKGDRGGPLVKNINGRWTLIGVGASGNYECNKN-NSYFFNVSWYQD  273 (282)
T ss_pred             EEEeec-----------------cceeEecccccCCCCccCeEEEEECCCEEEEEEEccCCCccccc-ccEEEEHHHhhh
Confidence            554333                 22222334577899999999999999999999998775422212 578889988876


Q ss_pred             HH
Q psy17330        178 WI  179 (184)
Q Consensus       178 WI  179 (184)
                      =|
T Consensus       274 ~I  275 (282)
T PF03761_consen  274 EI  275 (282)
T ss_pred             hh
Confidence            44

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.61  E-value=0.00038  Score=52.75  Aligned_cols=158  Identities=18%  Similarity=0.222  Sum_probs=89.1

Q ss_pred             ccccCCCceEEEcCCC--CCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeec
Q psy17330          2 FLAAGPDSSLHVIPSI--SDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLG   79 (184)
Q Consensus         2 ~~~~~~~~~i~~Hp~y--~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg   79 (184)
                      +.++||=.+|.+=-.|  -.+++++||+|++|+.              |+.+|.|.+ +|...  ........|..+|-.
T Consensus        68 ~~v~Gp~EQI~rVD~~~~V~~S~v~LLHL~~~~~--------------fTr~VlP~f-lp~~~--~~~~~~~~CVAVg~d  130 (267)
T PF09342_consen   68 LSVDGPHEQISRVDCFKDVPESNVLLLHLEQPAN--------------FTRYVLPTF-LPETS--NENESDDECVAVGHD  130 (267)
T ss_pred             cccCCChheEEEeeeeeeccccceeeeeecCccc--------------ceeeecccc-ccccc--CCCCCCCceEEEEcc
Confidence            3467888888776666  3477999999999999              999999999 78533  233344599999975


Q ss_pred             ccCCCCCCCcCceEEEEEeeCc-ccccc------cccccC------------CCCCCCeEEeeecC--------------
Q psy17330         80 SVPGGGPLSPKLRHVQISVVDN-PKCRQ------IFSNYG------------ATINENILCAGVLS--------------  126 (184)
Q Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~-~~C~~------~~~~~~------------~~~~~~~~C~~~~~--------------  126 (184)
                      .+  +.     .+...+.++.+ +.|..      .....+            ..-.+...|.....              
T Consensus       131 ~~--g~-----~kt~si~l~~n~~nC~s~~~Cy~~~~~~p~~~~n~e~~~s~s~w~g~i~c~~~~~~~~~a~F~~c~~~~  203 (267)
T PF09342_consen  131 DT--GR-----IKTVSIFLIPNLENCDSCNRCYKLQSKQPYALLNAEDMASISEWVGLISCVSEKGWYPAAKFTSCDQFG  203 (267)
T ss_pred             cC--Cc-----eeeeEEEeeccccCCCchhhhhhhcccCCcccccccccccccccceeEEeecCCCCcceEEEEeccccc
Confidence            41  11     12222222211 22332      211100            12234456654100              


Q ss_pred             --CCC-CCCCCCCCCeeEEEe-CCeEEEEEEEEecCC-CCCCCCCeEEEeCcchHHHHHhhh
Q psy17330        127 --GGK-DSCGGDSGGPLMYPL-DTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       127 --~~~-~~c~~d~G~pl~~~~-~~~~~L~Gi~s~~~~-c~~~~~p~vft~v~~~~~WI~~~i  183 (184)
                        +.. ..-...-+|-++|+. ...|+-+|+.++..+ |..-..|.--+.+-...+=|++++
T Consensus       204 ~kn~~~~~~~~s~~gv~vC~~~~~gw~p~~~~~~~~~~C~~f~~~~~i~~le~~y~~~q~~~  265 (267)
T PF09342_consen  204 LKNFSDKQHSPSDQGVLVCRDSHSGWYPTAFFNYNNGDCQGFNDPFGIRTLEEAYKSLQDSI  265 (267)
T ss_pred             ccccccCCCCcccCceEEEcCCCCCccchhhhccCCCccccccCeeeEeEHHHhHHHHHHHh
Confidence              000 011223466778884 447999999998765 644444443344444555555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=94.48  E-value=0.21  Score=41.61  Aligned_cols=48  Identities=19%  Similarity=0.109  Sum_probs=26.9

Q ss_pred             CCCCCCCCeeEEEeCCeEEEEEEEEecCC-CCCCCCCeEEEeCcchHHHHHh
Q psy17330        131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIAD  181 (184)
Q Consensus       131 ~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~-c~~~~~p~vft~v~~~~~WI~~  181 (184)
                      .-.|.+||||+...+   .++||.+.... .+.......+..+......+++
T Consensus       176 i~~GnSGGpl~n~~G---~viGI~~~~~~~~g~~~g~~faiP~~~~~~~~~~  224 (428)
T TIGR02037       176 INPGNSGGPLVNLRG---EVIGINTAIYSPSGGNVGIGFAIPSNMAKNVVDQ  224 (428)
T ss_pred             CCCCCCCCceECCCC---eEEEEEeEEEcCCCCccceEEEEEhHHHHHHHHH
Confidence            345789999987643   89999876422 1111112344555444444443

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=94.35  E-value=0.27  Score=40.01  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=19.1

Q ss_pred             CCCCCCCCCeeEEEeCCeEEEEEEEEec
Q psy17330        130 DSCGGDSGGPLMYPLDTKYYIIGVVSYG  157 (184)
Q Consensus       130 ~~c~~d~G~pl~~~~~~~~~L~Gi~s~~  157 (184)
                      ..-.|.+||||+...+   .++||.+..
T Consensus       194 ~i~~GnSGGpl~n~~G---~vIGI~~~~  218 (351)
T TIGR02038       194 AINAGNSGGALINTNG---ELVGINTAS  218 (351)
T ss_pred             ccCCCCCcceEECCCC---eEEEEEeee
Confidence            3456789999997744   899998754

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10139 serine endoprotease; Provisional

Probab=94.07  E-value=0.37  Score=40.64  Aligned_cols=49  Identities=16%  Similarity=0.029  Sum_probs=28.3

Q ss_pred             CCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC-CCCCCeEEEeCcchHHHHHh
Q psy17330        130 DSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTRVTNYIQWIAD  181 (184)
Q Consensus       130 ~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~-~~~~p~vft~v~~~~~WI~~  181 (184)
                      ..-.|.+||||+...+   .++||.+....-. .....++...+......+++
T Consensus       208 ~in~GnSGGpl~n~~G---~vIGi~~~~~~~~~~~~gigfaIP~~~~~~v~~~  257 (455)
T PRK10139        208 SINRGNSGGALLNLNG---ELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQ  257 (455)
T ss_pred             ccCCCCCcceEECCCC---eEEEEEEEEEcCCCCccceEEEEEhHHHHHHHHH
Confidence            3456789999998744   8999998643211 11112445555444444444

>PRK10898 serine endoprotease; Provisional

Probab=94.05  E-value=0.54  Score=38.29  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=19.4

Q ss_pred             CCCCCCCCCeeEEEeCCeEEEEEEEEecC
Q psy17330        130 DSCGGDSGGPLMYPLDTKYYIIGVVSYGK  158 (184)
Q Consensus       130 ~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~  158 (184)
                      ..-.|++||||+...+   .++||.+...
T Consensus       194 ~i~~GnSGGPl~n~~G---~vvGI~~~~~  219 (353)
T PRK10898        194 SINHGNSGGALVNSLG---ELMGINTLSF  219 (353)
T ss_pred             ccCCCCCcceEECCCC---eEEEEEEEEe
Confidence            3455789999987633   8999988643

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=92.90  E-value=0.24  Score=38.19  Aligned_cols=53  Identities=26%  Similarity=0.434  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeC-cchHHHHHhhhC
Q psy17330        129 KDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV-TNYIQWIADNIS  184 (184)
Q Consensus       129 ~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v-~~~~~WI~~~i~  184 (184)
                      .+.+.|++|+|++...+   +++|+..-+..-.........+|+ ..+.+||++.++
T Consensus       198 ~dT~pG~SGSpv~~~~~---~vigv~~~g~~~~~~~~~n~~vr~t~~~~~~I~~~~~  251 (251)
T COG3591         198 ADTLPGSSGSPVLISKD---EVIGVHYNGPGANGGSLANNAVRLTPEILNFIQQNIK  251 (251)
T ss_pred             ecccCCCCCCceEecCc---eEEEEEecCCCcccccccCcceEecHHHHHHHHHhhC
Confidence            46788999999999865   899999887763322333455666 446799998875

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.34  E-value=0.16  Score=45.39  Aligned_cols=52  Identities=25%  Similarity=0.191  Sum_probs=29.9

Q ss_pred             CCCCCCCCCeeEEE--eCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHHHHHh
Q psy17330        130 DSCGGDSGGPLMYP--LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD  181 (184)
Q Consensus       130 ~~c~~d~G~pl~~~--~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~WI~~  181 (184)
                      ..-.||||+||+.-  .+..|.|+|+.+.+.+.......-..++...+.+|+++
T Consensus       212 ~~~~GDSGSPlF~YD~~~kKWvl~Gv~~~~~~~~g~~~~~~~~~~~f~~~~~~~  265 (769)
T PF02395_consen  212 YGSPGDSGSPLFAYDKEKKKWVLVGVLSGGNGYNGKGNWWNVIPPDFINQIKQN  265 (769)
T ss_dssp             B--TT-TT-EEEEEETTTTEEEEEEEEEEECCCCHSEEEEEEECHHHHHHHHHH
T ss_pred             ccccCcCCCceEEEEccCCeEEEEEEEccccccCCccceeEEecHHHHHHHHhh
Confidence            34679999999865  66799999999987654332211222333334455543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>PRK10942 serine endoprotease; Provisional

Probab=91.53  E-value=1  Score=38.17  Aligned_cols=48  Identities=17%  Similarity=0.026  Sum_probs=27.1

Q ss_pred             CCCCCCCCeeEEEeCCeEEEEEEEEecCCC-CCCCCCeEEEeCcchHHHHHh
Q psy17330        131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKKC-AEVGFPGVYTRVTNYIQWIAD  181 (184)
Q Consensus       131 ~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c-~~~~~p~vft~v~~~~~WI~~  181 (184)
                      .-.|.+||||+...+   .++||.+....- +.....+++.-+.....++++
T Consensus       230 i~~GnSGGpL~n~~G---eviGI~t~~~~~~g~~~g~gfaIP~~~~~~v~~~  278 (473)
T PRK10942        230 INRGNSGGALVNLNG---ELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQ  278 (473)
T ss_pred             cCCCCCcCccCCCCC---eEEEEEEEEEcCCCCcccEEEEEEHHHHHHHHHH
Confidence            345789999997743   899998763221 111112344454444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		7e-11
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		7e-11
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		7e-11
1aut_C	250	Human Activated Protein C Length = 250		3e-10
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		4e-10
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		2e-09
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		6e-09
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		1e-08
2any_A	241	Expression, Crystallization And The Three-Dimension		2e-08
2anw_A	241	Expression, Crystallization And Three-Dimensional S		2e-08
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		2e-08
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		2e-08
1kig_H	241	Bovine Factor Xa Length = 241		3e-08
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		8e-08
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		8e-08
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		9e-08
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		9e-08
2bok_A	241	Factor Xa- Cation Length = 241		9e-08
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		9e-08
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		1e-07
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		1e-07
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		1e-07
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		1e-07
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		1e-07
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		1e-07
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		1e-07
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		1e-07
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		1e-07
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		1e-07
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		1e-07
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		1e-07
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		1e-07
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		1e-07
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		1e-07
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		1e-07
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		1e-07
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		1e-07
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		2e-07
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		2e-07
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		2e-07
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		2e-07
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		2e-07
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		2e-07
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		2e-07
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		2e-07
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		2e-07
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		4e-07
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		4e-07
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		4e-07
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		4e-07
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		4e-07
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		4e-07
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		4e-07
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		4e-07
2nwn_A	253	New Pharmacophore For Serine Protease Inhibition Re		5e-07
1o5a_B	253	Dissecting And Designing Inhibitor Selectivity Dete		5e-07
4fu7_A	246	Crystal Structure Of The Urokinase Length = 246		5e-07
1gj7_B	253	Engineering Inhibitors Highly Selective For The S1		5e-07
1owe_A	245	Substituted 2-Naphthamidine Inhibitors Of Urokinase		5e-07
1ejn_A	253	Urokinase Plasminogen Activator B-Chain Inhibitor C		5e-07
1w0z_U	247	Urokinase Type Plasminogen Activator Length = 247		6e-07
1owd_A	245	Substituted 2-naphthamidine Inhibitors Of Urokinase		6e-07
3ig6_B	253	Low Molecular Weigth Human Urokinase Type Plasminog		6e-07
3mwi_U	246	The Complex Crystal Structure Of Urokianse And 5-Ni		6e-07
1lmw_B	253	Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-A		6e-07
1gi8_B	245	A Novel Serine Protease Inhibition Motif Involving		6e-07
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		6e-07
2o8u_A	253	Crystal Structure And Binding Epitopes Of Urokinase		6e-07
1fv9_A	245	Crystal Structure Of Human Microurokinase In Comple		6e-07
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		6e-07
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		6e-07
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		6e-07
1ept_C	98	Refined 1.8 Angstroms Resolution Crystal Structure		8e-07
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		1e-06
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		1e-06
1pfx_C	235	Porcine Factor Ixa Length = 235		1e-06
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		1e-06
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		1e-06
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		1e-06
1ntp_A	223	Use Of The Neutron Diffraction HD EXCHANGE TECHNIQU		2e-06
1trn_A	224	Crystal Structure Of Human Trypsin 1: Unexpected Ph		2e-06
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		2e-06
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		2e-06
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		2e-06
2ra3_A	224	Human Cationic Trypsin Complexed With Bovine Pancre		2e-06
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		2e-06
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		2e-06
3qk1_A	229	Crystal Structure Of Enterokinase-Like Trypsin Vari		2e-06
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		2e-06
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		2e-06
2ftm_A	224	Crystal Structure Of A Bpti Variant (Cys38->ser) In		2e-06
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		2e-06
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		2e-06
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		2e-06
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		2e-06
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		2e-06
1g3b_A	228	Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Ba		2e-06
1tgs_Z	229	Three-Dimensional Structure Of The Complex Between		2e-06
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		2e-06
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		3e-06
1uhb_B	98	Crystal Structure Of Porcine Alpha Trypsin Bound Wi		3e-06
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		3e-06
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		3e-06
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		4e-06
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		4e-06
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		4e-06
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		4e-06
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		4e-06
2a31_A	223	Trypsin In Complex With Borate Length = 223		5e-06
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		5e-06
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		5e-06
1mtn_C	97	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		7e-06
1afq_C	96	Crystal Structure Of Bovine Gamma-Chymotrypsin Comp		7e-06
1v2u_T	223	Benzamidine In Complex With Bovine Trypsin Varinat		9e-06
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		9e-06
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		9e-06
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		9e-06
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		1e-05
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		1e-05
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		1e-05
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		1e-05
2xrc_A	565	Human Complement Factor I Length = 565		1e-05
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		1e-05
4dg4_A	224	Human Mesotrypsin-S39y Complexed With Bovine Pancre		1e-05
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		1e-05
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		1e-05
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		1e-05
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		1e-05
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		1e-05
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		1e-05
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		1e-05
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		1e-05
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		1e-05
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		1e-05
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		1e-05
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		1e-05
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		1e-05
1v2k_T	223	Factor Xa Specific Inhibitor In Complex With Bovine		1e-05
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		1e-05
1v2s_T	223	Benzamidine In Complex With Bovine Trypsin Variant		1e-05
4b2a_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-05
1dpo_A	223	Structure Of Rat Trypsin Length = 223		2e-05
1lto_A	245	Human Alpha1-Tryptase Length = 245		2e-05
1v2j_T	223	Benzamidine In Complex With Bovine Trypsin Variant		2e-05
4b1t_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		2e-05
1v2n_T	223	Potent Factor Xa Inhibitor In Complex With Bovine T		2e-05
1v2q_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		2e-05
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		2e-05
1v2o_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		2e-05
3pwb_A	223	Bovine Trypsin Variant X(Tripleglu217ile227) In Com		2e-05
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		2e-05
3plk_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		3e-05
3pmj_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		3e-05
2jet_C	99	Crystal Structure Of A Trypsin-Like Mutant (S189d,		3e-05
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		3e-05
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		3e-05
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		4e-05
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		4e-05
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		4e-05
4b2b_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		5e-05
4b2c_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		7e-05
3uns_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		7e-05
3uqv_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		7e-05
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		8e-05
1si5_H	240	Protease-Like Domain From 2-Chain Hepatocyte Growth		9e-05
1shy_A	234	The Crystal Structure Of Hgf Beta-Chain In Complex		9e-05
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		1e-04
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		1e-04
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		1e-04
1kdq_B	99	Crystal Structure Analysis Of The Mutant S189d Rat		1e-04
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		1e-04
3unq_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		2e-04
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		2e-04
3v0x_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		2e-04
3uwi_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		2e-04
1bqy_A	234	Plasminogen Activator (tsv-pa) From Snake Venom Len		2e-04
2bdg_A	223	Human Kallikrein 4 Complex With Nickel And P-aminob		2e-04
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		2e-04
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		2e-04
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		2e-04
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		3e-04
1pyt_C	253	Ternary Complex Of Procarboxypeptidase A, Proprotei		3e-04
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		3e-04
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		3e-04
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		3e-04
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		3e-04
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		4e-04
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		5e-04
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		5e-04
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		6e-04
1os8_A	223	Recombinant Streptomyces Griseus Trypsin Length = 2		7e-04
1sgt_A	223	Refined Crystal Structure Of Streptomyces Griseus T		7e-04
1fon_A	240	Crystal Structure Of Bovine Procarboxypeptidase A-S		7e-04
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		8e-04
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		8e-04
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		9e-04

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           LR   + +V + KC      YGA I+ N+LCAG               PL    +   Y+
Sbjct: 182 LREALVPLVADHKCSSP-EVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYL 240
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
            G++S+G  C  +  PGVYTRV NY+ WI D I
Sbjct: 241 YGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 273

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 72/175 (41%), Gaps = 25/175 (14%)
Query: 16  SISDDSHYQILHLEQRKKSKACKP-SQLGGVARLPGP-----AGPGCSLP-WGEFRLDLS 68
           S+ + S + ++ +  +KK   C   SQ      LP P     AG  C +  WG    ++S
Sbjct: 82  SVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVS 141
Query: 69  SGGLRXXXXXXXXXXXXXXXXKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXX 128
                                 LR   + +V + KC      YGA I+ N+LCAG     
Sbjct: 142 G-----------------YSSSLREALVPLVADHKCSSP-EVYGADISPNMLCAGYFDCK 183
Query: 129 XXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
                     PL    +   Y+ G++S+G  C  +  PGVYTRV NY+ WI D I
Sbjct: 184 SDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 238

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 72/175 (41%), Gaps = 25/175 (14%)
Query: 16  SISDDSHYQILHLEQRKKSKACKP-SQLGGVARLPGP-----AGPGCSLP-WGEFRLDLS 68
           S+ + S + ++ +  +KK   C   SQ      LP P     AG  C +  WG    ++S
Sbjct: 82  SVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVS 141
Query: 69  SGGLRXXXXXXXXXXXXXXXXKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXX 128
                                 LR   + +V + KC      YGA I+ N+LCAG     
Sbjct: 142 G-----------------YSSSLREALVPLVADHKCSSP-EVYGADISPNMLCAGYFDCK 183
Query: 129 XXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
                     PL    +   Y+ G++S+G  C  +  PGVYTRV NY+ WI D I
Sbjct: 184 SDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 238

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L  ++I VV + +C ++ SN    ++EN+LCAG+L             P++      +++
Sbjct: 149 LNFIKIPVVPHNECSEVMSN---MVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFL 205
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           +G+VS+G+ C  +   GVYT+V+ Y+ WI  +I
Sbjct: 206 VGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L  ++I VV + +C ++ SN    ++EN+LCAG+L             P++      +++
Sbjct: 149 LNFIKIPVVPHNECSEVMSN---MVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFL 205
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           +G+VS+G+ C  +   GVYT+V+ Y+ WI  +I
Sbjct: 206 VGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+   + ++ N +C+Q    Y   I EN++CAG               PLM   + ++++
Sbjct: 144 LQEADVPLLSNERCQQQMPEY--NITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFL 201
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
            GV S+G +CA    PGVY RV+ + +WI
Sbjct: 202 AGVTSFGYECALPNRPGVYARVSRFTEWI 230

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+   + ++ N KC+Q    Y   I EN++CAG               PLM   + ++ +
Sbjct: 144 LQEADVPLLSNEKCQQQMPEY--NITENMVCAGYEAGGVDSCQGDSGGPLMCQENNRWLL 201
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
            GV S+G +CA    PGVY RV  + +WI
Sbjct: 202 AGVTSFGYQCALPNRPGVYARVPRFTEWI 230

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGA-TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           L+ V + +V +  CR   ++YGA  I ++++CAGV              PL        Y
Sbjct: 146 LQKVTVPLVSDEDCR---ADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTY 202
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           + G+VS+G  CA  G+PGVYT V+ ++ WI  N
Sbjct: 203 LAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ V I +V N +C++ + +Y   I + ++CAG               PL+   +  + +
Sbjct: 145 LQKVNIPLVTNEECQKRYQDY--KITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRL 202
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           +G+ S+G+ CA    PGVYT+V  Y+ WI + 
Sbjct: 203 VGITSWGEGCARREQPGVYTKVAEYMDWILEK 234

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ V I +V N +C++ + +Y   I + ++CAG               PL+   +  + +
Sbjct: 145 LQKVNIPLVTNEECQKRYQDY--KITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRL 202
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD 181
           +G+ S+G+ CA    PGVYT+V  Y+ WI +
Sbjct: 203 VGITSWGEGCARREQPGVYTKVAEYMDWILE 233

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAG------VLXXXXXXXXXXXXXPLMYP 143
           +L+   + +  + +C   F  +  T+  N+LCAG      +              PL+  
Sbjct: 165 QLKEGHVRLYPSSRCAPKFL-FNKTVTNNMLCAGDTRSGEIYPNVHDACQGDSGGPLVCM 223
Query: 144 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
            D    ++G++S+G  C E   PGVYT+VTNY+ WI DN+
Sbjct: 224 NDNHMTLLGIISWGVGCGEKDVPGVYTKVTNYLGWIRDNM 263

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK--Y 148
           LR  Q++++D   C +  + Y   I   +LCAG L             PL+   D +  +
Sbjct: 138 LRQAQVTLIDATTCNEPQA-YNDAITPRMLCAGSLEGKTDACQGDSGGPLVSS-DARDIW 195
Query: 149 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           Y+ G+VS+G +CA+   PGVYTRVT    WI
Sbjct: 196 YLAGIVSWGDECAKPNKPGVYTRVTALRDWI 226

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ +++  VD   C+ + S++  TI  N+ CAG               P +      Y++
Sbjct: 143 LKMLEVPYVDRSTCK-LSSSF--TITPNMFCAGYDTQPEDACQGDSGGPHVTRFKDTYFV 199
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
            G+VS+G+ CA  G  GVYT+V+N+++WI
Sbjct: 200 TGIVSWGEGCARKGKFGVYTKVSNFLKWI 228

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 114 TINENILCAGVL------XXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 167
           T+ +N+LCAG                     PL+   D +  ++G++S+G  C +   PG
Sbjct: 175 TVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPG 234
Query: 168 VYTRVTNYIQWIADNI 183
           VYT+VTNY+ WI DN+
Sbjct: 235 VYTKVTNYLDWIRDNM 250

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 114 TINENILCAGVL------XXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 167
           T+ +N+LCAG                     PL+   D +  ++G++S+G  C +   PG
Sbjct: 188 TVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPG 247
Query: 168 VYTRVTNYIQWIADNI 183
           VYT+VTNY+ WI DN+
Sbjct: 248 VYTKVTNYLDWIRDNM 263

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +++  VD   C+ + S++   I +N+ CAG               P +      Y+
Sbjct: 142 RLKMLEVPYVDRNSCK-LSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYF 198
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA  G  G+YT+VT +++WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +++  VD   C+ + S++   I +N+ CAG               P +      Y+
Sbjct: 142 RLKMLEVPYVDRNSCK-LSSSF--IITQNMFCAGYDTKQEDACQGDAGGPHVTRFKDTYF 198
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA  G  G+YT+VT +++WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +++  VD   C+ + S++   I +N+ CAG               P +      Y+
Sbjct: 142 RLKMLEVPYVDRNSCK-LSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYF 198
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA  G  G+YT+VT +++WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +++  VD   C+ + S++   I +N+ CAG               P +      Y+
Sbjct: 142 RLKMLEVPYVDRNSCK-LSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYF 198
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA  G  G+YT+VT +++WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +++  VD   C+ + S++   I +N+ CAG               P +      Y+
Sbjct: 142 RLKMLEVPYVDRNSCK-LSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYF 198
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA  G  G+YT+VT +++WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +++  VD   C+ + S++   I +N+ CAG               P +      Y+
Sbjct: 142 RLKMLEVPYVDRNSCK-LSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYF 198
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA  G  G+YT+VT +++WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +++  VD   C+ + S++   I +N+ CAG               P +      Y+
Sbjct: 142 RLKMLEVPYVDRNSCK-LSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYF 198
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA  G  G+YT+VT +++WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +++  VD   C+ + S++   I +N+ CAG               P +      Y+
Sbjct: 157 RLKMLEVPYVDRNSCK-LSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYF 213
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA  G  G+YT+VT +++WI
Sbjct: 214 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 243

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +++  VD   C+ + S++   I +N+ CAG               P +      Y+
Sbjct: 142 RLKMLEVPYVDRNSCK-LSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYF 198
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA  G  G+YT+VT +++WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +++  VD   C+ + S++   I +N+ CAG               P +      Y+
Sbjct: 142 RLKMLEVPYVDRNSCK-LSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYF 198
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA  G  G+YT+VT +++WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +++  VD   C+ + S++   I +N+ CAG               P +      Y+
Sbjct: 142 RLKMLEVPYVDRNSCK-LSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYF 198
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA  G  G+YT+VT +++WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +++  VD   C+ + S++   I +N+ CAG               P +      Y+
Sbjct: 142 RLKMLEVPYVDRNSCK-LSSSF--IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYF 198
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA  G  G+YT+VT +++WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  +I +V N +C++ +   G  I   ++CAG               PL    +  +++
Sbjct: 145 LQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHL 202
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           +G+ S+G+ CA+   PGVYT V  Y+ WI + 
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  +I +V N +C++ +   G  I   ++CAG               PL    +  +++
Sbjct: 145 LQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHL 202
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           +G+ S+G+ CA+   PGVYT V  Y+ WI + 
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  +I +V N +C++ +   G  I   ++CAG               PL    +  +++
Sbjct: 145 LQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHL 202
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           +G+ S+G+ CA+   PGVYT V  Y+ WI + 
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  +I +V N +C++ +   G  I   ++CAG               PL    +  +++
Sbjct: 145 LQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHL 202
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           +G+ S+G+ CA+   PGVYT V  Y+ WI + 
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  +I +V N +C++ +   G  I   ++CAG               PL    +  +++
Sbjct: 145 LQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHL 202
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           +G+ S+G+ CA+   PGVYT V  Y+ WI + 
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  +I +V N +C++ +   G  I   ++CAG               PL    +  +++
Sbjct: 145 LQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHL 202
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           +G+ S+G+ CA+   PGVYT V  Y+ WI + 
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  +I +V N +C++ +   G  I   ++CAG               PL    +  +++
Sbjct: 145 LQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHL 202
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           +G+ S+G+ CA+   PGVYT V  Y+ WI + 
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  +I +V N +C++ +   G  I   ++CAG               PL    +  +++
Sbjct: 145 LQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHL 202
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           +G+ S+G+ CA+   PGVYT V  Y+ WI + 
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  +I +V N +C++ +   G  I   ++CAG               PL    +  +++
Sbjct: 145 LQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHL 202
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           +G+ S+G+ CA+   PGVYT V  Y+ WI + 
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  +I +V N +C++ +   G  I   ++CAG               PL    +  +++
Sbjct: 145 LQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHL 202
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           +G+ S+G+ CA+   PGVYT V  Y+ WI + 
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 90  KLRHVQISVVDNPKCRQIFSNY---GATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 146
            L +V I +VD+ KC   +        ++  N+LCAG+               L++ LD+
Sbjct: 301 NLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVF-LDS 359
Query: 147 ---KYYIIGVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS 184
              ++++ G+VS+G   C E G  GVYT+V NYI WI + IS
Sbjct: 360 ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 401

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 92  RHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYII 151
           + + + VV   +C + F   G  +  + LCAG                L    + ++++ 
Sbjct: 185 QKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQQFFLE 244
Query: 152 GVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           G+VS+G  C   G+PG+YT+V  Y  WI  NI
Sbjct: 245 GLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 90  KLRHVQISVVDNPKCRQIFSNY---GATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 146
            L +V I +VD+ KC   +        ++  N+LCAG+               L++ LD+
Sbjct: 226 NLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVF-LDS 284
Query: 147 ---KYYIIGVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS 184
              ++++ G+VS+G   C E G  GVYT+V NYI WI + IS
Sbjct: 285 ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 326

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 90  KLRHVQISVVDNPKCRQIFSNY---GATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 146
            L +V I +VD+ KC   +        ++  N+LCAG+               L++ LD+
Sbjct: 140 NLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGALVF-LDS 198
Query: 147 ---KYYIIGVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS 184
              ++++ G+VS+G   C E G  GVYT+V NYI WI + IS
Sbjct: 199 ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  +I +V N +C++ +   G  I   ++CAG               PL    +  +++
Sbjct: 532 LQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHL 589
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD 181
           +G+ S+G+ CA+   PGVYT V  Y+ WI +
Sbjct: 590 VGITSWGEGCAQRERPGVYTNVVEYVDWILE 620

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 90  KLRHVQISVVDNPKCRQIFSNY---GATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 146
            L +V I +VD+ KC   +        ++  N+LCAG+               L++ LD+
Sbjct: 140 NLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVF-LDS 198
Query: 147 ---KYYIIGVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS 184
              ++++ G+VS+G   C E G  GVYT+V NYI WI + IS
Sbjct: 199 ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGAT------INENILCAGVLXXXXXXXXXXXXXPLMYPL 144
           L+ +++ ++    C  ++ N  A       + E+++CAG +             PL  P+
Sbjct: 144 LQQLEVPLISRETCNALY-NIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV 202
Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           +  +Y+ G+VS+G  C     PGVYT  ++Y  WI   ++
Sbjct: 203 EGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVT 242

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGAT------INENILCAGVLXXXXXXXXXXXXXPLMYPL 144
           L+ +++ ++    C  ++ N  A       + E+++CAG +             PL  P+
Sbjct: 144 LQQLEVPLISRETCNSLY-NIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV 202
Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           +  +Y+ G+VS+G  C     PGVYT  ++Y  WI   ++
Sbjct: 203 EGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVT 242

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGAT------INENILCAGVLXXXXXXXXXXXXXPLMYPL 144
           L+ +++ ++    C  ++ N  A       + E+++CAG +             PL  P+
Sbjct: 144 LQQLEVPLISRETCNSLY-NIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV 202
Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           +  +Y+ G+VS+G  C     PGVYT  ++Y  WI   ++
Sbjct: 203 EGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVT 242

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  Q+ V++N  C + +      +    LCAG L             PL+     KY +
Sbjct: 156 LKEAQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYIL 214
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
            GV S+G  CA    PGVY RV+ ++ WI
Sbjct: 215 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 243

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  Q+ V++N  C + +      +    LCAG L             PL+     KY +
Sbjct: 155 LKEAQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYIL 213
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
            GV S+G  CA    PGVY RV+ ++ WI
Sbjct: 214 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 242

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  Q+ V++N  C + +      +    LCAG L             PL+     KY +
Sbjct: 153 LKEAQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYIL 211
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
            GV S+G  CA    PGVY RV+ ++ WI
Sbjct: 212 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  Q+ V++N  C + +      +    LCAG L             PL+     KY +
Sbjct: 154 LKEAQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYIL 212
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
            GV S+G  CA    PGVY RV+ ++ WI
Sbjct: 213 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 241

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  Q+ V++N  C + +      +    LCAG L             PL+     KY +
Sbjct: 152 LKEAQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYIL 210
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
            GV S+G  CA    PGVY RV+ ++ WI
Sbjct: 211 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 239

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  Q+ V++N  C + +      +    LCAG L             PL+     KY +
Sbjct: 156 LKEAQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYIL 214
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
            GV S+G  CA    PGVY RV+ ++ WI
Sbjct: 215 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 243

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  Q+ V++N  C + +      +    LCAG L             PL+     KY +
Sbjct: 153 LKEAQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYIL 211
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
            GV S+G  CA    PGVY RV+ ++ WI
Sbjct: 212 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 176 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 234
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 235 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 264

>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed By Crystal Structure Of Human Urokinase-Type Plasminogen Activator Complexed With A Cyclic Peptidyl Inhibitor, Upain-1 Length = 253

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 253

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDACQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase Length = 246

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPH-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites Of Ser190 Trypsin-Like Serine Protease Drug Targets Length = 253

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPH-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex Length = 253

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator Length = 247

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen Activator 2-[6- (3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino- Pyrrolidin-1- Yl)-3, 5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid Complex Length = 253

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And 5-Nitro-1h-Indole-2- Amidine Length = 246

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 253

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A Multi- Centered Short Hydrogen Bonding Network At The Active Site Length = 245

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPH-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 168 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 226
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 227 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 256

>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH Inhibitors Length = 253

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDAGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With 2- Amino-5-Hydroxy-Benzimidazole Length = 245

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 153 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 211
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 212 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+++++ +VD   C     +   TI  N+ CAG               P +  ++   ++
Sbjct: 143 LQYLRVPLVDRATC---LRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFL 199
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD 181
            G++S+G++CA  G  G+YT+V+ Y+ WI +
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+++++ +VD   C     +   TI  N+ CAG               P +  ++   ++
Sbjct: 143 LQYLRVPLVDRATC---LRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFL 199
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD 181
            G++S+G++CA  G  G+YT+V+ Y+ WI +
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+++++ +VD   C     +   TI  N+ CAG               P +  ++   ++
Sbjct: 143 LQYLRVPLVDRATC---LRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFL 199
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD 181
            G++S+G++CA  G  G+YT+V+ Y+ WI +
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230

>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of Porcine Epsilon-Trypsin Length = 98

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  V+ N  C+   S+Y   I  N++C G L             P++        +
Sbjct: 10  LQCLKAPVLSNSSCK---SSYPGQITGNMICVGFLQGGKDSCQGDSGGPVV----CNGQL 62
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 63  QGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 96

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L   Q+ V++N  C + +      +    LCAG L             PL+     KY +
Sbjct: 153 LMEAQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYIL 211
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
            GV S+G  CA    PGVY RV+ ++ WI
Sbjct: 212 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +   V+   KC    ++Y   I  N+ C G L             P++        
Sbjct: 138 ELQCLDAPVLSQAKCE---ASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVV----CNGQ 190
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           + GVVS+G  CA+   PGVYT+V NY++WI + I+
Sbjct: 191 LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+++++ +VD   C     +   TI  N+ CAG               P +  ++   ++
Sbjct: 143 LQYLKVPLVDRATC---LRSTKFTIYSNMFCAGFHEGGKDSCQGDSGGPHVTEVEGTSFL 199
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD 181
            G++S+G++CA  G  G+YT+V+ Y+ WI +
Sbjct: 200 TGIISWGEECAVKGKYGIYTKVSRYVNWIKE 230

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+++++ +VD   C     +   TI  N+ CAG               P +  ++   ++
Sbjct: 143 LQYLRVPLVDRATC---LRSTKFTIYNNMFCAGFHEGGRDSCQGDAGGPHVTEVEGTSFL 199
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD 181
            G++S+G++CA  G  G+YT+V+ Y+ WI +
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+++++ +VD   C     +   TI  N+ CAG               P +  ++   ++
Sbjct: 143 LQYLRVPLVDRATC---LRSTKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFL 199
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD 181
            G++S+G++CA  G  G+YT+V+ Y+ WI +
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 135 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGXLEGGKDSCQGDSGGPVVCSGKLQ--- 188
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO Determine The Conformational Dynamics Of Trypsin Length = 223

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 135 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ--- 188
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected Phosphorylation Of Tyrosine 151 Length = 224

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +   V+   KC    ++Y   I  N+ C G L             P++        
Sbjct: 134 ELQCLDAPVLSQAKCE---ASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVV----CNGQ 186
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           + GVVS+G  CA+   PGVYT+V NY++WI + I+
Sbjct: 187 LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 221

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  V+ N  C+   S+Y   I  N++C G L             P++        +
Sbjct: 135 LQCLKAPVLSNSSCK---SSYPGQITGNMICVGFLQGGKDSCQGDSGGPVV----CNGQL 187
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 QGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  Q+ V++N  C + +      +    LCAG L             PL+     KY +
Sbjct: 697 LKEAQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYIL 755
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
            GV S+G  CA    PGVY RV+ ++ WI
Sbjct: 756 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 784

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I E + CAG               P        +Y+ G+VS+G+ CA VG  GVYTRV+ 
Sbjct: 171 ITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQ 230
Query: 175 YIQWI 179
           YI+W+
Sbjct: 231 YIEWL 235

>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (bpti) Length = 224

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +   V+   KC    ++Y   I  N+ C G L             P++        
Sbjct: 134 ELQCLDAPVLSQAKCE---ASYPGKITSNMFCVGFLEGGKDSCQGDAGGPVV----CNGQ 186
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           + GVVS+G  CA+   PGVYT+V NY++WI + I+
Sbjct: 187 LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 221

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 135 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ--- 188
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I E + CAG               P        +Y+ G+VS+G+ CA VG  GVYTRV+ 
Sbjct: 171 ITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQ 230
Query: 175 YIQWI 179
           YI+W+
Sbjct: 231 YIEWL 235

>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant Length = 229

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 135 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ--- 188
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++        +
Sbjct: 149 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVV----CSGKL 201
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 202 QGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 235

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 155 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDAGGPVVCSGKLQ--- 208
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 209 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 241

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 135 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCAGKLQ--- 188
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 155 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ--- 208
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 209 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 241

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 135 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ--- 188
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 135 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ--- 188
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 135 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ--- 188
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base Magnesium(Ii) Chelate Length = 228

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 140 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ--- 193
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 194 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 226

>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between Pancreatic Secretory Inhibitor (Kazal Type) And Trypsinogen At 1.8 Angstroms Resolution. Structure Solution, Crystallographic Refinement And Preliminary Structural Interpretation Length = 229

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 141 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ--- 194
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 195 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 227

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 135 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDXGGPVVCSGKLQ--- 188
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++    C+   S Y   I  N+ CAG L             P++     +   
Sbjct: 135 LKCLKAPILSTSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ--- 188
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 -GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto Catalyticaly Produced Native Peptide At 2.15 A Resolution Length = 98

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  V+ +  C+   S+Y   I  N++C G L             P++        +
Sbjct: 10  LQCLKAPVLSDSSCK---SSYPGQITGNMICVGFLEGGKDSCQGDSGGPVV----CNGQL 62
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 63  QGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 96

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGAT------INENILCAGVLXXXXXXXXXXXXXPLMYPL 144
           L+ V++ +++N  C   +     T      I +++LCAG               PL+  +
Sbjct: 145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCKV 202
Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           +  +   GVVS+G+ CA+   PG+YTRVT Y+ WI
Sbjct: 203 NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGAT------INENILCAGVLXXXXXXXXXXXXXPLMYPL 144
           L+ V++ +++N  C   +     T      I +++LCAG               PL+  +
Sbjct: 145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCKGDSGGPLVCKV 202
Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           +  +   GVVS+G+ CA+   PG+YTRVT Y+ WI
Sbjct: 203 NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           LR + + ++ +  C    S Y   I  N+ CAG +             P++        +
Sbjct: 135 LRCLDLPILSSSSCN---SAYPGQITSNMFCAGFMEGGKDSCQGDSGGPVV----CNGQL 187
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            GVVS+G  CA+   PGVYT+V NY  WI+  +S
Sbjct: 188 QGVVSWGYGCAQRNKPGVYTKVCNYRSWISSTMS 221

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGAT------INENILCAGVLXXXXXXXXXXXXXPLMYPL 144
           L+ V++ +++N  C   +     T      + +++LCAG               PL+  +
Sbjct: 145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKV 202
Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           +  +   GVVS+G+ CA+   PG+YTRVT Y+ WI
Sbjct: 203 NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGAT------INENILCAGVLXXXXXXXXXXXXXPLMYPL 144
           L+ V++ +++N  C   +     T      + +++LCAG               PL+  +
Sbjct: 145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKV 202
Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           +  +   GVVS+G+ CA+   PG+YTRVT Y+ WI
Sbjct: 203 NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  V+ +  C+   S+Y   I  N++C G L             P++        +
Sbjct: 143 LQCLKAPVLSDSSCK---SSYPGQITGNMICVGFLEGGKDSCQGDSGGPVV----CNGQL 195
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 196 QGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 229

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGAT------INENILCAGVLXXXXXXXXXXXXXPLMYPL 144
           L+ V++ +++N  C   +     T      + +++LCAG               PL+  +
Sbjct: 145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKV 202
Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           +  +   GVVS+G+ CA+   PG+YTRVT Y+ WI
Sbjct: 203 NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  V+ +  C+   S+Y   I  N++C G L             P++        +
Sbjct: 135 LQCLKAPVLSDSSCK---SSYPGQITGNMICVGFLEGGKDSCQGDSGGPVV----CNGQL 187
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 QGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  V+ +  C+   S+Y   I  N++C G L             P++        +
Sbjct: 135 LQCLKAPVLSDSSCK---SSYPGQITGNMICVGFLEGGKDSCQGDSGGPVV----CNGQL 187
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 QGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  V+ +  C+   S+Y   I  N++C G L             P++        +
Sbjct: 135 LQCLKAPVLSDSSCK---SSYPGQITGNMICVGFLEGGKDSCQGDSGGPVV----CNGQL 187
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 QGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 97

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ N  C++    +G  I + ++CAG               PL+   +  + 
Sbjct: 6   RLQQASLPLLSNTNCKKY---WGTKIKDAMICAGA--SGVSSCMGDSGGPLVCKKNGAWT 60
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           ++G+VS+G        PGVY RVT  + W+   ++
Sbjct: 61  LVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95

>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed With A Synthetic Inhibitor Length = 96

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ N  C++    +G  I + ++CAG               PL+   +  + 
Sbjct: 5   RLQQASLPLLSNTNCKKY---WGTKIKDAMICAGA--SGVSSCMGDSGGPLVCKKNGAWT 59
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           ++G+VS+G        PGVY RVT  + W+   ++
Sbjct: 60  LVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 94

>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai) Bt.D1 Length = 223

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 113 ATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV 172
           A I  N+ CAG L             P++     +    G+VS+G  CA+   PGVYT+V
Sbjct: 154 AIITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ----GIVSWGSGCAQKNKPGVYTKV 209
Query: 173 TNYIQWIADNIS 184
            NY+ WI   I+
Sbjct: 210 CNYVSWIKQTIA 221

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ N  C++    +G  I + ++CAG               PL+   +  + 
Sbjct: 154 RLQQASLPLLSNTNCKKY---WGTKIKDAMICAGA--SGVSSCMGDSGGPLVCKKNGAWT 208
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           ++G+VS+G        PGVY RVT  + W+   ++
Sbjct: 209 LVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 243

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  V+ +  C+   S Y   I  N++C G L             P++        +
Sbjct: 135 LQCLKAPVLSDSSCK---SAYPGQITGNMICVGFLEGGKDSCQGDSGGPVV----CNGQL 187
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 QGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +   V+   +C+   ++Y   I  ++ C G L             P++        
Sbjct: 134 ELKCLDAPVLTQAECK---ASYPGKITNSMFCVGFLEGGKDSCQRDAGGPVV----CNGQ 186
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           + GVVS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 187 LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIA 221

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++        + G+VS+G  CA    PGV
Sbjct: 158 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVV----CNGELQGIVSWGYGCALPDNPGV 213
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 214 YTKVCNYVDWIQDTIA 229

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++        + G+VS+G  CA    PGV
Sbjct: 158 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVV----CNGELQGIVSWGYGCALPDNPGV 213
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 214 YTKVCNYVDWIQDTIA 229

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +   V+   +C+   ++Y   I  ++ C G L             P++        
Sbjct: 134 ELKCLDAPVLTQAECK---ASYPGKITNSMFCVGFLEGGKDSCQRDSGGPVV----CNGQ 186
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           + GVVS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 187 LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIA 221

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++        + G+VS+G  CA    PGV
Sbjct: 158 ASYPGKITDNMVCVGFLEGGKDSCQGNSGGPVV----CNGELQGIVSWGYGCALPDNPGV 213
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 214 YTKVCNYVDWIQDTIA 229

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 149 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIA 180
           Y+ GVVS+G+ C +  FPGVYT+V NY  WI+
Sbjct: 521 YVWGVVSWGENCGKPEFPGVYTKVANYFDWIS 552

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+   + ++ N  C++    +G  I + ++CAG               PL+   +  + 
Sbjct: 139 RLQQASLPLLSNTNCKKY---WGTKIKDAMICAGA--SGVSSCMGDSGGPLVCKKNGAWT 193
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           ++G+VS+G        PGVY RVT  + W+   ++
Sbjct: 194 LVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 228

>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 224

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           +L+ +   V+   +C+   ++Y   I  ++ C G L             P++        
Sbjct: 134 ELKCLDAPVLTQAECK---ASYPGKITNSMFCVGFLEGGKDSCQRDAGGPVV----CNGQ 186
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           + GVVS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 187 LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIA 221

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++        + G+VS+G  CA    PGV
Sbjct: 160 ASYPGKITDNMVCVGFLEGGKDSCQGDAGGPVV----CNGELQGIVSWGYGCALPDNPGV 215
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 216 YTKVCNYVDWIQDTIA 231

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++        + G+VS+G  CA    PGV
Sbjct: 160 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVV----CNGELQGIVSWGYGCALPDNPGV 215
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 216 YTKVCNYVDWIQDTIA 231

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+VS+G  CA    PGV
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ----GIVSWGYGCALPDNPGV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+VS+G  CA    PGV
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKSSCQGDSGGPVVCNGELQ----GIVSWGYGCALPDNPGV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+VS+G  CA    PGV
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ----GIVSWGYGCALPDNPGV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+VS+G  CA    PGV
Sbjct: 172 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ----GIVSWGYGCALPDNPGV 227
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 228 YTKVCNYVDWIQDTIA 243

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+VS+G  CA    PGV
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ----GIVSWGYGCALPDNPGV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+VS+G  CA    PGV
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKDSCQGDAGGPVVCNGELQ----GIVSWGYGCALPDNPGV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+VS+G  CA    PGV
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ----GIVSWGYGCALPDNPGV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+VS+G  CA    PGV
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ----GIVSWGYGCALPDNPGV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+VS+G  CA    PGV
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ----GIVSWGYGCALPDNPGV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLM-YPLDTKYY 149
           L+  +I V++   C  +       I   ++C G L             PL     D + +
Sbjct: 149 LQKGEIRVINQTTCENLLPQ---QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIF 205
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
             GVVS+G  CA+   PGVYTR+  +  WI +N
Sbjct: 206 QAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLM-YPLDTKYY 149
           L+  +I V++   C  +       I   ++C G L             PL     D + +
Sbjct: 149 LQKGEIRVINQTTCENLLPQ---QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIF 205
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
             GVVS+G  CA+   PGVYTR+  +  WI +N
Sbjct: 206 QAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238

>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Variant X(Triple.Glu)bt.D2 Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G+ CA+   PGVYT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ----GIVSWGEGCAQKNKPGVYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+VS+G  CA    PGV
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ----GIVSWGYGCALPDNPGV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssfi.Glu)bt.D1 Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G+ CA+   PGVYT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ----GIVSWGEGCAQKNKPGVYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tga) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G+ CA+   PGVYT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDAGGPVVCSGKLQ----GIVSWGEGCAQKNKPGVYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+VS+G  CA    PGV
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKDSCQGDCGGPVVCNGELQ----GIVSWGYGCALPDNPGV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGAT------INENILCAGVLXXXXXXXXXXXXXPLMYPL 144
           L+ V++ +++N  C   +     T      I +++LCAG               PL+  +
Sbjct: 145 LKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCKGDSGGPLVCKV 202
Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           +  +   GVVS+ + CA+   PG+YTRVT Y+ WI
Sbjct: 203 NGTWLQAGVVSWDEGCAQPNRPGIYTRVTYYLDWI 237

>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri) Bt.C1 Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G  CA+   PGVYT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ----GIVSWGSGCAQKNKPGVYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala ( Ta) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G  CA+   PGVYT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDAGGPVVCSGKLQ----GIVSWGSGCAQKNKPGVYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin Variant X(99175190)BT Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G  CA+   PGVYT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ----GIVSWGSGCAQKNKPGVYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Sswi)bt.B4 Length = 223

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G  CA+   PGVYT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ----GIVSWGSGCAQKNKPGVYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLM-YPLDTKYY 149
           L+  +I V+    C  +       I   ++C G L             PL     D + +
Sbjct: 149 LQKGEIRVIQQTTCENLLPQ---QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIF 205
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
             GVVS+G  CA+   PGVYTR+  +  WI +N
Sbjct: 206 QAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238

>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Ssyi)bt.B4 Length = 223

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G  CA+   PGVYT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ----GIVSWGSGCAQKNKPGVYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G+ CA+   PG+YT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ----GIVSWGEGCAQKNKPGIYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMY--PLDTKY 148
           L+  ++ ++D   C      Y   I    +CAG               PLM     +  Y
Sbjct: 155 LQEARVDLIDLGLCNST-RWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSY 213
Query: 149 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
            ++G+ S+G  CA    PGVYT   +Y+ WIA  I
Sbjct: 214 VVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKI 248

>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G  CA+   PG+YT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ----GIVSWGSGCAQKNKPGIYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G  CA+   PG+YT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ----GIVSWGSGCAQKNKPGIYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 99

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           KL+   + +V    C++   ++G+ I + + CAG               PL+   D  + 
Sbjct: 8   KLQQAALPIVSEADCKK---SWGSKITDVMTCAGA--SGVDSCMGDSGGPLVCQKDGVWT 62
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G        PGVY+RVT  + W+
Sbjct: 63  LAGIVSWGSGVCSTSTPGVYSRVTALMPWV 92

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 58  LPWGEFRLDLSSGGLRXXXXXXXXXXXXXXXXKLRHVQISVVDNPKCRQIFSNYGATINE 117
           LPW     D++ G L                  L+HV + V+D   C +   + GA I E
Sbjct: 108 LPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA-ITE 166
Query: 118 NILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYI 176
            ++CA                    PL     + GVVS+G + C     PG+YTRV +Y 
Sbjct: 167 RLMCA------ESNRRDSCKGDSGGPLVCGGVLEGVVSWGSRVCGNRKKPGIYTRVASYA 220
Query: 177 QWI 179
            WI
Sbjct: 221 AWI 223

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+V +G  CA    PGV
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ----GIVEWGYGCALPDNPGV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I +N++C G L             P++   + +    G+VS+G  CA    PGVYT+V N
Sbjct: 156 ITDNMVCVGFLEGGKDACQGDSGGPVVCNGELQ----GIVSWGYGCALPDNPGVYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI D I+
Sbjct: 212 YVDWIQDTIA 221

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+V +G  CA    PGV
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ----GIVKWGYGCALPDNPGV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK--- 147
           LR+V +++  N  C  ++++   TI ++++CA                    PL  K   
Sbjct: 143 LRYVTLNITTNAFCDAVYTS--DTIYDDMICA--TDNTGMTDRDSCQGDSGGPLSVKDGS 198
Query: 148 --YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
             + ++G+VS+G  CA  G+PGVY+RV  +  WI D I+
Sbjct: 199 GIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWITDTIT 236

>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tgpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G+ CA+   PG YT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDAGGPVVCSGKLQ----GIVSWGEGCAQKNKPGFYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G  CA+   PG YT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDAGGPVVCSGKLQ----GIVSWGSGCAQKNKPGFYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G  CA+   PG YT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ----GIVSWGSGCAQKNKPGFYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G  CA+   PG YT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ----GIVSWGSGCAQKNKPGFYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 109 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 168
           ++Y   I +N++C G L             P++   + +    G+VS+G  CA    P V
Sbjct: 150 ASYPGKITDNMVCVGFLEGGKGSCQGDSGGPVVCNGELQ----GIVSWGYGCALPDNPDV 205
Query: 169 YTRVTNYIQWIADNIS 184
           YT+V NY+ WI D I+
Sbjct: 206 YTKVCNYVDWIQDTIA 221

>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor Length = 240

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           LR   + ++ N KC Q       T+NE+ +CAG               PL+        +
Sbjct: 135 LRVAHLYIMGNEKCSQHHRG-KVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMV 193
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           +GV+  G+ CA    PG++ RV  Y +WI
Sbjct: 194 LGVIVPGRGCAIPNRPGIFVRVAYYAKWI 222

>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With The Sema Domain Of The Met Receptor Length = 234

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           LR   + ++ N KC Q       T+NE+ +CAG               PL+        +
Sbjct: 135 LRVAHLYIMGNEKCSQHHRG-KVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMV 193
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           +GV+  G+ CA    PG++ RV  Y +WI
Sbjct: 194 LGVIVPGRGCAIPNRPGIFVRVAYYAKWI 222

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYP--LDTKY 148
           L+  +++++D   C      Y   I    +CAG               PLM     +  +
Sbjct: 155 LQEARVALIDLELCNST-RWYNGRIRSTNVCAGYPRGKIDTCQGDSGGPLMCRDRAENTF 213
Query: 149 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
            ++G+ S+G  CA    PGVYT    Y+ WIA  I
Sbjct: 214 VVVGITSWGVGCARAKRPGVYTSTWPYLNWIASKI 248

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 58  LPWGEFRLDLSSGGLRXXXXXXXXXXXXXXXXKLRHVQISVVDNPKCRQIFSNYGATINE 117
           LPW     D++ G L                  L+HV + V+D   C +   + GA I E
Sbjct: 108 LPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA-ITE 166
Query: 118 NILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYI 176
            ++CA                    PL     + GVV+ G + C     PG+YTRV +Y 
Sbjct: 167 RLMCA------ESNRRDSCKGDAGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYA 220
Query: 177 QWI 179
            WI
Sbjct: 221 AWI 223

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLD 145
           L+ V + +V+ P C+    +    I +N+ CAG                     +  P +
Sbjct: 160 LQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 146 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            ++Y +G+VS+G+ C   G PG YT V    +WI   I 
Sbjct: 217 NRWYQMGIVSWGEGCDRDGKPGFYTHVFRLKKWIQKVID 255

>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 99

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 149
           KL+   + +V    C++   ++G+ I + + CAG               PL+   D  + 
Sbjct: 8   KLQQAALPIVSEADCKK---SWGSKITDVMTCAGA--SGVDSCMGDSGGPLVCQKDGVWT 62
Query: 150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           + G+VS+G        P VY+RVT  + W+
Sbjct: 63  LAGIVSWGSGVCSTSTPAVYSRVTALMPWV 92

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 58  LPWGEFRLDLSSGGLRXXXXXXXXXXXXXXXXKLRHVQISVVDNPKCRQIFSNYGATINE 117
           LPW     D++ G L                  L+HV + V+D   C +   + GA I E
Sbjct: 115 LPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA-ITE 173
Query: 118 NILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYI 176
            ++CA                    PL     + GVV+ G + C     PG+YTRV +Y 
Sbjct: 174 RLMCA------ESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYA 227
Query: 177 QWI 179
            WI
Sbjct: 228 AWI 230

>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ CAG L             P++     +    G+VS+G  CA+   PG YT++ N
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ----GIVSWGSGCAQKNKPGFYTKLCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 58  LPWGEFRLDLSSGGLRXXXXXXXXXXXXXXXXKLRHVQISVVDNPKCRQIFSNYGATINE 117
           LPW     D++ G L                  L+HV + V+D   C +   + GA I E
Sbjct: 108 LPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA-ITE 166
Query: 118 NILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYI 176
            ++CA                    PL     + GVV+ G + C     PG+YTRV +Y 
Sbjct: 167 RLMCA------ESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYA 220
Query: 177 QWI 179
            WI
Sbjct: 221 AWI 223

>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ C G L             P++     +    G+VS+G+ CA+   PG YT+V N
Sbjct: 156 ITSNMFCVGYLEGGKDACQGDSGGPVVCSGKLQ----GIVSWGEGCAQKNKPGFYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 115 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 174
           I  N+ C G L             P++     +    G+VS+G+ CA+   PG YT+V N
Sbjct: 156 ITSNMFCVGYLEGGKDACQGDSGGPVVCSGKLQ----GIVSWGEGCAQKNKPGFYTKVCN 211
Query: 175 YIQWIADNIS 184
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom Length = 234

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 95  QISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVV 154
            I+++D+  CR  +S     +    LCAG+L             PL+          G+V
Sbjct: 141 NINILDHAVCRTAYS--WRQVANTTLCAGILQGGRDTCHFDSGGPLI----CNGIFQGIV 194
Query: 155 SYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
           S+G   C + G PGVYT+V +Y+ WI   I+
Sbjct: 195 SWGGHPCGQPGEPGVYTKVFDYLDWIKSIIA 225

>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And P-aminobenzamidine Length = 223

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 143 PLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNI 183
           PL    Y+ G+VS+GK  C +VG PGVYT +  + +WI   +
Sbjct: 180 PLICNGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTV 221

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLM----YPLDT 146
           L+  ++ ++ N  C      YG  I   + CAG               P +         
Sbjct: 264 LQEARVPIISNDVCNGA-DFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTP 322
Query: 147 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           ++ + G+VS+G  CA    PGVYT+V+++ +WI   I
Sbjct: 323 RWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 359

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLM----YPLDT 146
           L+  ++ ++ N  C      YG  I   + CAG               P +         
Sbjct: 264 LQEARVPIISNDVCNGA-DFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTP 322
Query: 147 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           ++ + G+VS+G  CA    PGVYT+V+++ +WI   I
Sbjct: 323 RWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 359

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 58  LPWGEFRLDLSSGGLRXXXXXXXXXXXXXXXXKLRHVQISVVDNPKCRQIFSNYGATINE 117
           LPW     D+  G L                 +L+HV + V+D   C +   + GA I +
Sbjct: 108 LPWQRVDRDVEPGTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGA-ITQ 166
Query: 118 NILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYI 176
            ++CA                    PL     + GVV+ G + C     PG+YTRV +Y 
Sbjct: 167 RMMCA------ESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYA 220
Query: 177 QWI 179
            WI
Sbjct: 221 AWI 223

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLM----YPLDT 146
           L+  ++ ++ N  C      YG  I   + CAG               P +         
Sbjct: 147 LQEARVPIISNDVCNGA-DFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTP 205
Query: 147 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           ++ + G+VS+G  CA    PGVYT+V+++ +WI   I
Sbjct: 206 RWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 242

>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 253

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPL-DTKY 148
           KL+   + VVD   C Q +  +G T+ + ++CAG               PL  P  D  +
Sbjct: 157 KLQEALLPVVDYEHCSQ-YDWWGITVKKTMVCAG--GDTRSGCDGDSGGPLNCPAADGSW 213
Query: 149 YIIGVVSYGKK--CAEVGFPGVYTRVTNYIQWIADNIS 184
            + GV S+     C  +  P V+TRV+ +I WI + I+
Sbjct: 214 QVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWINETIA 251

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPL--MYPLDTKY 148
           L  ++I +VD+  C++ ++     +  +++CAG               P+  +     ++
Sbjct: 153 LMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQW 212
Query: 149 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           Y++G VS+G  C +    GVY+ + +   WI
Sbjct: 213 YLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 243

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 98  VVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYG 157
           VVD   C Q    +G T+ E ++CAG               PL    D ++ + G+VS+G
Sbjct: 164 VVDYATCSQ-RDWWGTTVKETMVCAGG-DGVISACNGDSGGPLNCQADGQWDVRGIVSFG 221
Query: 158 K--KCAEVGFPGVYTRVTNYIQWI 179
               C     P V+TRV+ YI WI
Sbjct: 222 SGLSCNTFKKPTVFTRVSAYIDWI 245

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CA  L             P++     +   
Sbjct: 135 LKCLKAPILSDSSCK---SAYPGQITSNMFCAYGLEGKGDSCQGDSGGPVVCSGKLQ--- 188
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  C     PGVYT+V NY+ WI   I+
Sbjct: 189 -GIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 58  LPWGEFRLDLSSGGLRXXXXXXXXXXXXXXXXKLRHVQISVVDNPKCRQIFSNYGATINE 117
           LPW     D++ G L                  L+HV + V+D   C +   + GA I E
Sbjct: 108 LPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA-ITE 166
Query: 118 NILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYI 176
            ++CA                    PL     + GVV+ G   C     PG+YTRV +Y 
Sbjct: 167 RLMCA------ESNRRDSCKGDSGGPLVCGGVLEGVVTSGSAVCGNRKKPGIYTRVASYA 220
Query: 177 QWI 179
            WI
Sbjct: 221 AWI 223

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+ ++  ++ +  C+   S Y   I  N+ CAG+                  P+     +
Sbjct: 135 LKCLKAPILSDSSCK---SAYPGQITSNMFCAGLEGGDSCQGDSGG------PVVCSGKL 185
Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 186 QGIVSWGSGCAK-NKPGVYTKVCNYVSWIKQTIA 218

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLD 145
           L+ V + +V+ P C+    +    I +N+ CAG                     +  P +
Sbjct: 160 LQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 146 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            ++Y +G+VS+G+ CA  G  G YT V    +WI   I 
Sbjct: 217 NRWYQMGIVSWGEGCARKGKYGFYTHVFRLKKWIQKVID 255

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT---K 147
           L  ++I +VD+  C++ ++     +  +++CAG               P M  L+    +
Sbjct: 308 LMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGP-MVTLNRERGQ 366
Query: 148 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
           +Y++G VS+G  C +    GVY+ + +   WI
Sbjct: 367 WYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 398

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 150
           L+  Q+ VVD   C +    +G+T+  N++CAG                     + ++ +
Sbjct: 145 LQQGQLLVVDYATCSKP-GWWGSTVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQWQV 203
Query: 151 IGVVSYGKK--CAEVGFPGVYTRVTNYIQWI 179
            G+VS+G    C     P V+TRV+NYI WI
Sbjct: 204 HGIVSFGSSLGCNYYHKPSVFTRVSNYIDWI 234

>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin Length = 223

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT--KY 148
           L    +  V +  CR  + N     NE I CAG                 M+  D   ++
Sbjct: 128 LLKANVPFVSDAACRSAYGNE-LVANEEI-CAGYPDTGGVDTCQGDSGGPMFRKDNADEW 185
Query: 149 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIA 180
             +G+VS+G  CA  G+PGVYT V+ +   IA
Sbjct: 186 IQVGIVSWGYGCARPGYPGVYTEVSTFASAIA 217

>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin At 1.7 Angstroms Resolution Length = 223

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT--KY 148
           L    +  V +  CR  + N     NE I CAG                 M+  D   ++
Sbjct: 128 LLKANVPFVSDAACRSAYGNE-LVANEEI-CAGYPDTGGVDTCQGDSGGPMFRKDNADEW 185
Query: 149 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIA 180
             +G+VS+G  CA  G+PGVYT V+ +   IA
Sbjct: 186 IQVGIVSWGYGCARPGYPGVYTEVSTFASAIA 217

>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6 Subunit Iii, A Highly Structured Truncated Zymogen E Length = 240

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPL-DTKY 148
           KL+   +  VD   C Q +  +G T+ + ++CAG               PL  P  D  +
Sbjct: 144 KLQQALLPTVDYEHCSQ-WDWWGITVKKTMVCAG--GDTRSGCNGDSGGPLNCPAADGSW 200
Query: 149 YIIGVVSYGKK--CAEVGFPGVYTRVTNYIQWIADNIS 184
            + GV S+     C  +  P V+TRV+ +I WI + I+
Sbjct: 201 QVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIA 238

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 146 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           TK+Y  G+VS+G +C   G  G+YTRV NY+ WI   +
Sbjct: 290 TKFYAAGLVSWGPQC---GTYGLYTRVKNYVDWIMKTM 324

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 143 PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PL      IG+VS+G  CA +G P VYTRV++++ WI  N+
Sbjct: 181 PLVANGAQIGIVSFGSPCA-LGEPDVYTRVSSFVSWINANL 220

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLD 145
           L+ V + +V+ P C+    +    I +N+ CAG                     +  P +
Sbjct: 160 LQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 216
Query: 146 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            ++Y +G+VS+GK C   G  G YT V    +WI   I 
Sbjct: 217 NRWYQMGIVSWGKGCDRDGKYGFYTHVFRLKKWIQKVID 255

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	2e-44
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	7e-42
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	3e-41
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	3e-41
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	2e-40
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	3e-40
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	5e-40
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	3e-39
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	8e-39
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	1e-38
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	1e-38
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	2e-38
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	4e-38
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	5e-38
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	8e-38
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	9e-38
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	9e-38
1aut_C	250	Activated protein C; serine proteinase, plasma cal	1e-37
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	2e-37
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	2e-37
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	3e-37
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	4e-37
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	6e-37
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	9e-37
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	1e-36
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	2e-36
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	2e-36
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	2e-36
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	3e-36
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	4e-36
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	6e-36
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	6e-36
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	9e-36
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	9e-36
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	1e-35
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	2e-35
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	2e-35
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	2e-35
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	3e-35
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	3e-35
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	4e-35
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	5e-35
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	8e-35
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	1e-34
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	2e-34
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	2e-34
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	2e-34
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	2e-34
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	2e-34
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	3e-34
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	3e-34
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	4e-34
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	4e-34
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	6e-34
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	8e-34
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	8e-34
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	2e-33
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	2e-33
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	2e-33
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	2e-33
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	2e-33
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	2e-33
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	3e-33
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	3e-33
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	3e-33
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	6e-33
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	1e-32
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	2e-32
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	2e-32
2aiq_A	231	Protein C activator; snake venom serine proteinase	2e-32
1md8_A	329	C1R complement serine protease; innate immunity, a	2e-32
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	4e-32
1gpz_A	399	Complement C1R component; hydrolase, activation, i	4e-32
2xrc_A	565	Human complement factor I; immune system, hydrolas	5e-32
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	7e-32
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	7e-32
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	8e-32
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	8e-32
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	9e-32
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	1e-31
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	1e-31
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	2e-31
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	2e-31
1elv_A	333	Complement C1S component; trypsin-like serin prote	1e-30
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	3e-30
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	3e-30
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	4e-30
1a7s_A	225	Heparin binding protein; serine protease homolog,	6e-30
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	5e-26
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	3e-24
3hrz_D	741	Complement factor B; serine protease, glycosilated	6e-23
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	2e-06
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	6e-04

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score =  147 bits (373), Expect = 2e-44
 Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 2/101 (1%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
            G  S   + + + VV   +C + F   G  +  + LCAG     KDSCGGDSGGPL+  
Sbjct: 177 TGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGG-EKAKDSCGGDSGGPLLAE 235

Query: 144 -LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
             + ++++ G+VS+G  C   G+PG+YT+V  Y  WI  NI
Sbjct: 236 RANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score =  139 bits (353), Expect = 7e-42
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 2/105 (1%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G+V   G  +  L+   + ++ N +C+Q        I EN++CAG   GG DSC GDSGG
Sbjct: 132 GTVVYQGTTADILQEADVPLLSNERCQQQM--PEYNITENMICAGYEEGGIDSCQGDSGG 189

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PLM   + ++++ GV S+G +CA    PGVY RV+ + +WI   +
Sbjct: 190 PLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFL 234

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score =  138 bits (349), Expect = 3e-41
 Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G V   G  +  L+++++ +VD   C +   +   TI  N+ CAG   GG+DSC GDSGG
Sbjct: 131 GRVFHKGRSALVLQYLRVPLVDRATCLR---STKFTITNNMFCAGFHEGGRDSCQGDSGG 187

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           P +  ++   ++ G++S+G++CA  G  G+YT+V+ Y+ WI +  
Sbjct: 188 PHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKT 232

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score =  138 bits (349), Expect = 3e-41
 Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 3/106 (2%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G     G  S +L+ +++  VD   C+    +    I +N+ CAG  +  +D+C GDSGG
Sbjct: 131 GRTHEKGEQSTRLKMLEVPYVDRNSCKL---SSSFIITQNMFCAGYDTKQEDACQGDSGG 187

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           P +      Y++ G+VS+G+ CA  G  G+YT+VT +++WI  ++ 
Sbjct: 188 PHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score =  136 bits (344), Expect = 2e-40
 Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G     G +   L+ V I +V N +C++ +      I + ++CAG   GGKD+C GDSGG
Sbjct: 133 GFSKEKGEIQNILQKVNIPLVTNEECQKRY--QDYKITQRMVCAGYKEGGKDACKGDSGG 190

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           PL+   +  + ++G+ S+G+ CA    PGVYT+V  Y+ WI +   
Sbjct: 191 PLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQ 236

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score =  135 bits (342), Expect = 3e-40
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 2/106 (1%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G       +   L+  +I +V N +C++ +   G  I   ++CAG   GGKD+C GDSGG
Sbjct: 133 GYRKLRDKIQNTLQKAKIPLVTNEECQKRY--RGHKITHKMICAGYREGGKDACKGDSGG 190

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           PL    +  ++++G+ S+G+ CA+   PGVYT V  Y+ WI +   
Sbjct: 191 PLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score =  135 bits (342), Expect = 5e-40
 Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGA--TINENILCAGVLSGGKDSCGGDS 136
           G +   G  + +L  + +  +    C Q     G    I E + CAG   G KDSC GDS
Sbjct: 133 GQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDS 192

Query: 137 GGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           GGP        +Y+ G+VS+G+ CA VG  GVYTRV+ YI+W+   + 
Sbjct: 193 GGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR 240

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score =  132 bits (335), Expect = 3e-39
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 6/113 (5%)

Query: 74  GPGCL----GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGK 129
               +    G+   GG     L+ V + +V +  CR  +      I ++++CAGV  GGK
Sbjct: 125 TGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADY--GADEILDSMICAGVPEGGK 182

Query: 130 DSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
           DSC GDSGGPL        Y+ G+VS+G  CA  G+PGVYT V+ ++ WI  N
Sbjct: 183 DSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score =  132 bits (333), Expect = 8e-39
 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 2/102 (1%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM-- 141
                  L  ++I +VD+  C++ ++     +  +++CAG   GGKD+C GDSGGP++  
Sbjct: 146 LQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTL 205

Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
                ++Y++G VS+G  C +    GVY+ + +   WI    
Sbjct: 206 NRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVT 247

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score =  131 bits (332), Expect = 1e-38
 Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G    GG  +  L+  +I V++   C  +       I   ++C G LSGG DSC GDSGG
Sbjct: 137 GHTQYGGTGALILQKGEIRVINQTTCENL---LPQQITPRMMCVGFLSGGVDSCQGDSGG 193

Query: 139 PLMYP-LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PL     D + +  GVVS+G  CA+   PGVYTR+  +  WI +N 
Sbjct: 194 PLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENT 239

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score =  130 bits (330), Expect = 1e-38
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 3/107 (2%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G+   GG     L    +  V +  CR   S+    +   ++CAG  +  +D+C GDSGG
Sbjct: 118 GANREGGSQQRYLLKANVPFVSDAACRS--SSSFILVANEMICAGYDTKQEDTCQGDSGG 175

Query: 139 PLMYPL-DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           P+       ++  +G+VS+G+ CA  G  GVYT V+ +   IA    
Sbjct: 176 PMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAAR 222

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score =  130 bits (330), Expect = 2e-38
 Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 2/106 (1%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G++   G     LR  Q++++D   C +  + Y   I   +LCAG L G  D+C GDSGG
Sbjct: 126 GALKNDGYSQNHLRQAQVTLIDATTCNEPQA-YNDAITPRMLCAGSLEGKTDACQGDSGG 184

Query: 139 PLMYP-LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PL+       +Y+ G+VS+G +CA+   PGVYTRVT    WI    
Sbjct: 185 PLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKT 230

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score =  134 bits (338), Expect = 4e-38
 Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
            G  S  L    + +     C Q    Y   +  + LC G     +DSC GDSGGPL  P
Sbjct: 270 NGSSSDVLLQANVPLQPRSACSQ---AYRRAVPLSQLCVG-GGDLQDSCKGDSGGPLQAP 325

Query: 144 L------DTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
                    K    G+VS G   C ++  PG+YT V  Y+QWI D ++
Sbjct: 326 AQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMA 373

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score =  136 bits (344), Expect = 5e-38
 Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G       +   L+  +I +V N +C++ +   G  I   ++CAG   GGKD+C GDSGG
Sbjct: 520 GYRKLRDKIQNTLQKAKIPLVTNEECQKRY--RGHKITHKMICAGYREGGKDACKGDSGG 577

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PL    +  ++++G+ S+G+ CA+   PGVYT V  Y+ WI +  
Sbjct: 578 PLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 622

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score =  129 bits (327), Expect = 8e-38
 Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 1/103 (0%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
                 S  LR   + +V + KC      YGA I+ N+LCAG      D+C GDSGGPL 
Sbjct: 138 ENVSGYSSSLREALVPLVADHKCSSPEV-YGADISPNMLCAGYFDCKSDACQGDSGGPLA 196

Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
              +   Y+ G++S+G  C  +  PGVYTRV NY+ WI D I 
Sbjct: 197 CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 239

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score =  129 bits (326), Expect = 9e-38
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 83  GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMY 142
           G       LR   + ++ N KC Q       T+NE+ +CAG    G   C GD GGPL+ 
Sbjct: 127 GLINYDGLLRVAHLYIMGNEKCSQHHR-GKVTLNESEICAGAEKIGSGPCEGDYGGPLVC 185

Query: 143 PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
                  ++GV+  G+ CA    PG++ RV  Y +WI   I 
Sbjct: 186 EQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIIL 227

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score =  129 bits (326), Expect = 9e-38
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 1/101 (0%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
           G   +  L+  Q+ V++N  C +        +    LCAG L+GG DSC GD+GGPL+  
Sbjct: 146 GTFGAGLLKEAQLPVIENKVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCF 204

Query: 144 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
              KY + GV S+G  CA    PGVY RV+ ++ WI   + 
Sbjct: 205 EKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 245

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score =  128 bits (325), Expect = 1e-37
 Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 8/111 (7%)

Query: 79  GSVPGGGPLSPK-----LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCG 133
           G        + +     L  ++I VV + +C ++       ++EN+LCAG+L   +D+C 
Sbjct: 132 GYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV---MSNMVSENMLCAGILGDRQDACE 188

Query: 134 GDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           GDSGGP++      ++++G+VS+G+ C  +   GVYT+V+ Y+ WI  +I 
Sbjct: 189 GDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR 239

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score =  129 bits (326), Expect = 2e-37
 Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 1/102 (0%)

Query: 83  GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMY 142
                S  LR   + +V + KC      YGA I+ N+LCAG      D+C GDSGGPL  
Sbjct: 174 NVSGYSSSLREALVPLVADHKCSSPEV-YGADISPNMLCAGYFDCKSDACQGDSGGPLAC 232

Query: 143 PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
             +   Y+ G++S+G  C  +  PGVYTRV NY+ WI D I 
Sbjct: 233 EKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 274

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score =  128 bits (324), Expect = 2e-37
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 2/106 (1%)

Query: 79  GSVPGGGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSG 137
           G       L P+ L+   + ++ + +C+Q    YG+ +   +LCA       DSC GDSG
Sbjct: 141 GKENSTDYLYPEQLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSG 199

Query: 138 GPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           GPL+  L  +  + G+VS+G+ CA    PGVYTRV++++ WI  + 
Sbjct: 200 GPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score =  128 bits (323), Expect = 3e-37
 Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 6/107 (5%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSN---YGATINENILCAGVLSGGKDSCGGDSGGPL 140
            G L+  L +V I +VD+ KC   +        ++  N+LCAG+ SGGKDSC GDSGG L
Sbjct: 134 RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGAL 193

Query: 141 M--YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
           +       ++++ G+VS+G   C E G  GVYT+V NYI WI + IS
Sbjct: 194 VFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score =  127 bits (322), Expect = 4e-37
 Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGA-TINENILCAGVLSGGKDSCGGDSG 137
           G   G   L   L+   I V+   +C       G   I +N +C    +G   +C GDSG
Sbjct: 133 GRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSG 192

Query: 138 GPLMYPLDTKYYIIGVVS----YGKKCAEVGFPGVYTRVTNYIQWIADN 182
           GPL  P D    ++GV S     G       +P VYTRV+ Y+ WI DN
Sbjct: 193 GPLNCP-DGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDN 240

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score =  128 bits (323), Expect = 6e-37
 Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
                 SP L+  ++ ++D   C      Y   I    +CAG   G  D+C GDSGGPLM
Sbjct: 146 ENARRTSPMLQEARVDLIDLGLCNSTRW-YNGRIRSTNVCAGYPEGKIDTCQGDSGGPLM 204

Query: 142 Y--PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
                +  Y ++G+ S+G  CA    PGVYT   +Y+ WIA  I 
Sbjct: 205 CKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKIG 249

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score =  129 bits (326), Expect = 1e-36
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G+    G  +  L+  ++ ++ N  C      YG  I   + CAG   GG D+C GDSGG
Sbjct: 252 GNTQYYGQQAGVLQEARVPIISNDVCNGADF-YGNQIKPKMFCAGYPEGGIDACQGDSGG 310

Query: 139 PLMYP----LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           P +         ++ + G+VS+G  CA    PGVYT+V+++ +WI   I 
Sbjct: 311 PFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIK 360

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score =  125 bits (316), Expect = 2e-36
 Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 7/106 (6%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G+       S KL+ + I ++    C    ++Y   I   + CAG L GGKDSC GDSGG
Sbjct: 122 GNTMSSTADSNKLQCLNIPILSYSDCN---NSYPGMITNAMFCAGYLEGGKDSCQGDSGG 178

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           P++        + GVVS+G  CAE G PGVY +V  +  W+   ++
Sbjct: 179 PVV----CNGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score =  125 bits (317), Expect = 2e-36
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G   G G     L    ++V+ N +C      +   + E+ +C   L     +C GD GG
Sbjct: 125 GETKGTGN-DTVLNVALLNVISNQECNIK---HRGRVRESEMCTEGLLAPVGACEGDYGG 180

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           PL       + + G++   + CA   +P V+TRV+ ++ WI   + 
Sbjct: 181 PLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMR 226

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score =  125 bits (316), Expect = 2e-36
 Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
             G     +L+ +   V+   KC     +Y   I  N+ C G L GGKDSC GDSGGP++
Sbjct: 130 SSGADYPDELQCLDAPVLSQAKCEA---SYPGKITSNMFCVGFLEGGKDSCQGDSGGPVV 186

Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
                   + GVVS+G  CA+   PGVYT+V NY++WI + I+
Sbjct: 187 ----CNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score =  125 bits (317), Expect = 3e-36
 Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 7/113 (6%)

Query: 79  GSVPGGGPLSP--KLRHVQISVVDNPKCRQIFSNYGA-----TINENILCAGVLSGGKDS 131
           G V     L     L+ +++ ++    C  +++          + E+++CAG + GGKD+
Sbjct: 130 GHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDA 189

Query: 132 CGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           C GDSGGPL  P++  +Y+ G+VS+G  C     PGVYT  ++Y  WI   ++
Sbjct: 190 CQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVT 242

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score =  124 bits (314), Expect = 4e-36
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
           P  G        V I++++   CR  +  +        LCAG+L GGKD+C GDSGGPL+
Sbjct: 130 PTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLI 189

Query: 142 YPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
                     G+ S+G   CA+   P  YT+V +++ WI + I+
Sbjct: 190 C----NGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIA 229

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score =  124 bits (314), Expect = 6e-36
 Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 4/107 (3%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G +   GP++ +L+     VVD   C Q    +G T+ E ++CAG   G   +C GDSGG
Sbjct: 145 GRLYTNGPIAAELQQGLQPVVDYATCSQRDW-WGTTVKETMVCAG-GDGVISACNGDSGG 202

Query: 139 PLMYPLDTKYYIIGVVS--YGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PL    D ++ + G+VS   G  C     P V+TRV+ YI WI   +
Sbjct: 203 PLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score =  119 bits (302), Expect = 6e-36
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 5/100 (5%)

Query: 85  GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL 144
                +L+   + ++ N  C++    +G  I + ++CAG  + G  SC GDSGGPL+   
Sbjct: 1   ANTPDRLQQASLPLLSNTNCKKY---WGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKK 55

Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           +  + ++G+VS+G        PGVY RVT  + W+   ++
Sbjct: 56  NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score =  124 bits (313), Expect = 9e-36
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 5/102 (4%)

Query: 83  GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMY 142
                  +L+   + ++ N  C++    +G  I + ++CAG  + G  SC GDSGGPL+ 
Sbjct: 147 TNANTPDRLQQASLPLLSNTNCKKY---WGTKIKDAMICAG--ASGVSSCMGDSGGPLVC 201

Query: 143 PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
             +  + ++G+VS+G        PGVY RVT  + W+   ++
Sbjct: 202 KKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 243

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score =  124 bits (313), Expect = 9e-36
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVL---SGGKDSCGGD 135
            +   G      L+ V + +V+ P C+    +    I +N+ CAG         D+C GD
Sbjct: 148 WTANVGKGQPSVLQVVNLPIVERPVCKD---STRIRITDNMFCAGYKPDEGKRGDACEGD 204

Query: 136 SGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           SGGP +   P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 205 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score =  123 bits (311), Expect = 1e-35
 Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 4/108 (3%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G     G L+  L+   +  VD   C      +G+T+  +++CAG   G +  C GDSGG
Sbjct: 133 GLTRTNGQLAQTLQQAYLPTVDYAICSSSSY-WGSTVKNSMVCAG-GDGVRSGCQGDSGG 190

Query: 139 PLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYTRVTNYIQWIADNIS 184
           PL   ++ +Y + GV S+  +  C     P V+TRV+ YI WI + I+
Sbjct: 191 PLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIA 238

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score =  123 bits (311), Expect = 2e-35
 Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 7/107 (6%)

Query: 83  GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGG------KDSCGGDS 136
                S +L+   + +  + +C         T+ +N+LCAG    G       D+C GDS
Sbjct: 145 LSPFYSERLKEAHVRLYPSSRCTSQHL-LNRTVTDNMLCAGDTRSGGPQANLHDACQGDS 203

Query: 137 GGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           GGPL+   D +  ++G++S+G  C +   PGVYT+VTNY+ WI DN+
Sbjct: 204 GGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 250

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score =  122 bits (309), Expect = 2e-35
 Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
             G      L+ ++  ++ +  C+   S Y   I  N+ CAG L GGKDSC GDSGGP++
Sbjct: 126 SSGTSYPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVV 182

Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
                   + G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 183 ----CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score =  126 bits (319), Expect = 2e-35
 Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 6/107 (5%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSN---YGATINENILCAGVLSGGKDSCGGDSGGPL 140
            G L+  L +V I +VD+ KC   +        ++  N+LCAG+ SGGKDSC GDSGG L
Sbjct: 295 RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGAL 354

Query: 141 M--YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
           +       ++++ G+VS+G   C E G  GVYT+V NYI WI + IS
Sbjct: 355 VFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 401

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score =  122 bits (308), Expect = 3e-35
 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G    GGPLS  L+   +  VD+  C      +G+T+   ++CAG   G    C GDSGG
Sbjct: 133 GKTSTGGPLSDSLKQAWLPSVDHATCSSSGW-WGSTVKTTMVCAG--GGANSGCNGDSGG 189

Query: 139 PLMYPLDTKYYIIGVVS--YGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PL   ++  YY+ GV S      C     P V+TRV+ YI W+   +
Sbjct: 190 PLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score =  121 bits (307), Expect = 3e-35
 Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 5/101 (4%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
            GG      L  V + +V    CR  +      I   + CAGV SGGKDSC GDSGGP++
Sbjct: 128 EGGSSTPVNLLKVTVPIVSRATCRAQYGTSA--ITNQMFCAGVSSGGKDSCQGDSGGPIV 185

Query: 142 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 182
              D+   +IG VS+G  CA   + GVY  V     +I   
Sbjct: 186 ---DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY 223

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score =  123 bits (311), Expect = 4e-35
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS---GGKDSCGGD 135
            +   G      L+ V + +V+ P C+    +    I +N+ CAG         D+C GD
Sbjct: 178 WTANVGKGQPSVLQVVNLPIVERPVCKD---STRIRITDNMFCAGYKPDEGKRGDACEGD 234

Query: 136 SGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           SGGP +   P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 235 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score =  121 bits (307), Expect = 5e-35
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G    GG LS  LR + + V+D   C      +  +++ +++C    S  +  C GDSGG
Sbjct: 126 GLTHQGGRLSRVLRELDLQVLDTRMCNNS-RFWNGSLSPSMVCLAADSKDQAPCKGDSGG 184

Query: 139 PLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNI 183
           PL+        + GV+S+  + C ++  P V T V  Y+ WI    
Sbjct: 185 PLVC--GKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVT 228

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score =  124 bits (314), Expect = 8e-35
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 83  GGGPLSPKLRHVQISVVDNPKCRQIFSN----YGATINENILCAGVLSGGKDSCGGDSGG 138
                S  L+ +Q+  VD  KC+    N        +++  +CAG    GKD+C GD G 
Sbjct: 276 SRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGE-QGKDTCTGDGGS 334

Query: 139 PLMYPL---DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           PL  P     ++Y  +G+V++G  C +   PGVY  V ++  WI   + 
Sbjct: 335 PLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQ 383

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score =  121 bits (305), Expect = 1e-34
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 83  GGGPLSPKLRHVQISVVDNPKCRQIFSN--YGATINENILCAGVLSGGKDSCGGDSGGPL 140
                S  L     +VVD   C + +        I + + CAG          GD+G P 
Sbjct: 131 KSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPA 190

Query: 141 MYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           +        ++GV SY        FP V+ RV  Y+  I D IS
Sbjct: 191 VQ----NGTLVGVASYISSMPS-EFPSVFLRVGYYVLDIKDIIS 229

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score =  120 bits (304), Expect = 2e-34
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
           P        L+ V + ++ N  C      +   + + +LCAG + GG  +C  DSGGPL+
Sbjct: 141 PIKFKYPDDLQCVNLKLLPNEDCD---KAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLI 197

Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
                   + G+ S+G + C E   P VYT++  +  WI + ++
Sbjct: 198 ----CDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 237

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score =  120 bits (304), Expect = 2e-34
 Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 6/105 (5%)

Query: 83  GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSG--GKDSCGGDSGGPL 140
           GG      LR+V +++  N  C  ++     TI ++++CA   +G   +DSC GDSGGPL
Sbjct: 135 GGVCCPAVLRYVTLNITTNAFCDAVY--TSDTIYDDMICATDNTGMTDRDSCQGDSGGPL 192

Query: 141 MYP-LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
                   + ++G+VS+G  CA  G+PGVY+RV  +  WI D I+
Sbjct: 193 SVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWITDTIT 236

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score =  120 bits (303), Expect = 2e-34
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
           P        L+ V I+++ N  C      Y   + + +LCAG + GGKD+C  DSGGPL+
Sbjct: 138 PTRWQKPDDLQCVFITLLPNENCA---KVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLI 194

Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
                   + G  SYG   C + G P +YT +  +  WI D + 
Sbjct: 195 C----DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score =  120 bits (302), Expect = 2e-34
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G      P    L+  Q++VVD  +CR  +      ++  + CA     G     GD+G 
Sbjct: 130 GDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPI--FLSLQVFCAQ--KVGVSLESGDAGD 185

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           P +     +  ++GV +Y  K  E G P V+T+V +Y+ WI D I
Sbjct: 186 PTVQ----QDTLVGVAAYFPKRPE-GAPEVFTKVGSYVSWIQDII 225

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score =  120 bits (303), Expect = 2e-34
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
           P        L+ V + ++ N +C+     +   + + +LC G L GGKD+C GDSGGPLM
Sbjct: 139 PENFSFPDDLQCVDLKILPNDECK---KAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPLM 195

Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
                   + GV S+G   C     P V  RV +Y++WI D I+
Sbjct: 196 ----CDGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIA 235

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score =  119 bits (302), Expect = 3e-34
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
                    L  V + ++    C ++   Y   +  ++LCAG+    K++C GDSGGPL+
Sbjct: 125 SPDVTFPSDLMCVDVKLISPQDCTKV---YKDLLENSMLCAGIPDSKKNACNGDSGGPLV 181

Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
                +  + G+VS+G   C +   PGVYT+V  + +WI D + 
Sbjct: 182 C----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMK 221

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score =  120 bits (302), Expect = 3e-34
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G +  GGPL  KL+   +  VD   C Q    +G T+ + ++CAG     +  C GDSGG
Sbjct: 133 GRLYTGGPLPDKLQQALLPTVDYEHCSQWDW-WGITVKKTMVCAG--GDTRSGCNGDSGG 189

Query: 139 PLMYPL-DTKYYIIGVVS--YGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           PL  P  D  + + GV S      C  +  P V+TRV+ +I WI + I+
Sbjct: 190 PLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIA 238

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score =  119 bits (300), Expect = 4e-34
 Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
            G     ++   I +V   +C      Y   I +N+LCAG    GKDSC GDSGGPL+  
Sbjct: 127 DGDFPDTIQCAYIHLVSREECE---HAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLV-- 181

Query: 144 LDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
                ++ G+VS+G   C     PGVYT V  Y  WI   I 
Sbjct: 182 --CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score =  119 bits (301), Expect = 4e-34
 Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFS-NYGATINENILCAGVLSGGKDSCGGDSGGPL 140
           P     S  LR V ++V+    C      N    I ++++CAG   G KDSC GD+GGPL
Sbjct: 135 PDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPL 194

Query: 141 MYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT-NYIQWIADNI 183
           +     K     +VS G +C     PG+YT +T  Y  WI  N+
Sbjct: 195 IC----KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score =  118 bits (299), Expect = 6e-34
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
            G +   L+ V +SVV    C      Y    + ++ CAG     KDSC GDSGGPL+  
Sbjct: 128 NGRMPTVLQCVNVSVVSEEVCS---KLYDPLYHPSMFCAGGGQDQKDSCNGDSGGPLIC- 183

Query: 144 LDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
                Y+ G+VS+G   C +VG PGVYT +  + +WI   + 
Sbjct: 184 ---NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ 222

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score =  118 bits (299), Expect = 8e-34
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G +   G     L+  Q+ VVD   C +    +G+T+  N++CAG   G   SC GDSGG
Sbjct: 133 GRLQTNGASPDILQQGQLLVVDYATCSKPGW-WGSTVKTNMICAG-GDGIISSCNGDSGG 190

Query: 139 PLMYPL-DTKYYIIGVVSYGKK--CAEVGFPGVYTRVTNYIQWIADNIS 184
           PL     + ++ + G+VS+G    C     P V+TRV+NYI WI   I+
Sbjct: 191 PLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIA 239

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score =  118 bits (299), Expect = 8e-34
 Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 8/104 (7%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
           P       KL+ V + V+ N  C Q+   +   + + +LCAG  +GGK +C GDSGGPL+
Sbjct: 138 PEEFLTPKKLQCVDLHVISNDVCAQV---HPQKVTKFMLCAGRWTGGKSTCSGDSGGPLV 194

Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
                   + G+ S+G + CA    P +YT+V +Y +WI D I 
Sbjct: 195 ----CNGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIV 234

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score =  118 bits (298), Expect = 2e-33
 Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 10/114 (8%)

Query: 79  GSVPGGGPLSP--KLRHVQISVVDNPKCRQIFSNYG------ATINENILCAGVLSGGKD 130
           G V    PL P   L+ V++ +++N  C   +            I +++LCAG  +  +D
Sbjct: 131 GDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRD 188

Query: 131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           SC GDSGGPL+  ++  +   GVVS+G+ CA+   PG+YTRVT Y+ WI   + 
Sbjct: 189 SCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVP 242

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score =  121 bits (306), Expect = 2e-33
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS---GGKDSCGGD 135
            +   G      L+ V + +V+ P C+    +    I +N+ CAG         D+C GD
Sbjct: 313 WTANVGKGQPSVLQVVNLPIVERPVCKD---STRIRITDNMFCAGYKPDEGKRGDACEGD 369

Query: 136 SGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           SGGP +   P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 370 SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 420

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score =  118 bits (297), Expect = 2e-33
 Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
           P             I+++D+  C+  +           LCAG+L GGKD+CGGDSGGPL+
Sbjct: 128 PIKVTYPDVPYCAYINLLDDAVCQAGYPEL--LTEYRTLCAGILEGGKDTCGGDSGGPLI 185

Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
                     G+VS+G   C +   PGVYT+V +Y  WI   I+
Sbjct: 186 C----NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIA 225

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score =  118 bits (297), Expect = 2e-33
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 85  GPLSPKLRHVQISVVDNPKCRQIF--SNYGATINENILCAGVLSGGKDSCGGDSGGPLM- 141
             ++  LR V++ V +   C       N     ++N+ CAG  S  +D+C GDSGG    
Sbjct: 138 EKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAV 197

Query: 142 -YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
             P   ++   G+VS+G  C+     G YT+V NY+ WI   +
Sbjct: 198 RDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 238

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score =  117 bits (296), Expect = 2e-33
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
                 S  L+ V++ +  N KC      Y   + E +LCA         C GDSGG L+
Sbjct: 138 TFTNRGSGTLQCVELRLQSNEKCA---RAYPEKMTEFVLCATHRDDSGSICLGDSGGALI 194

Query: 142 YPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS 184
                     G+ S+G  +CA+     V+T+V  + +WI + I 
Sbjct: 195 ----CDGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score =  117 bits (295), Expect = 2e-33
 Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 8/107 (7%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G V   G     L+HV + V+D   C +    +   I E ++CA   S  +DSC GD+GG
Sbjct: 129 GIVNHAGRRPDSLQHVLLPVLDRATCNRRTH-HDGAITERLMCAE--SNRRDSCKGDAGG 185

Query: 139 PLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
           PL+        + GVV+ G + C     PG+YTRV +Y  WI   ++
Sbjct: 186 PLV----CGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA 228

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score =  117 bits (295), Expect = 3e-33
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
           P    +S  L+ V I ++ N KC      Y   + + +LCAG + GGKD+C GDSGGPL+
Sbjct: 136 PSEMVVSHDLQCVNIHLLSNEKCI---ETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLI 192

Query: 142 YPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
                   + G+ S G   CA+   P +Y ++  +  WI   + 
Sbjct: 193 ----CDGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK 232

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score =  117 bits (295), Expect = 3e-33
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
                       I +V +  C  ++       +   LCAG+L GG+D+C GDSGGPL+  
Sbjct: 130 TTTYPDVPHCTNIFIVKHKWCEPLY--PWVPADSRTLCAGILKGGRDTCHGDSGGPLIC- 186

Query: 144 LDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
                 + G+V+ G + C +   P VYT+V +Y  WI   I+
Sbjct: 187 ---NGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIA 225

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score =  116 bits (294), Expect = 3e-33
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 9/105 (8%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G +    P + KL+ V + V    KC   F NY   I    +CAG  S  K+S  GDSGG
Sbjct: 128 GRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNY---IPFTQICAGDPSKRKNSFSGDSGG 184

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PL+          G+VSYG+       P VYTR+++++ WI   +
Sbjct: 185 PLVC----NGVAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTM 223

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score =  116 bits (292), Expect = 6e-33
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G     G  S  L+ V+++V ++ KC           +   LC G     K S  GDSGG
Sbjct: 128 GQTAPLGKHSHTLQEVKMTVQEDRKCESDL--RHYYDSTIELCVGDPEIKKTSFKGDSGG 185

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PL+          G+VSYG+       P   T+V++++ WI   +
Sbjct: 186 PLVC----NKVAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKTM 224

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score =  117 bits (294), Expect = 1e-32
 Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
           G  L   L    +++V+  +C Q+      T+     C         +     G  +   
Sbjct: 183 GTDLGNSLTTRPVTLVEGEECGQV---LNVTVTTRTYCER---SSVAAMHWMDGSVVTRE 236

Query: 144 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
               +++ GV+             + T+V+ Y  W    ++
Sbjct: 237 HRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIMN 276

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score =  115 bits (290), Expect = 2e-32
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 8/109 (7%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIF-SNYGATINENILCAGVLSGGKDSCGGDSG 137
           G        S  LR V+I+++D   C      N+   I  N++CAG L GG+DSC GDSG
Sbjct: 126 GRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSG 185

Query: 138 GPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYTRVT-NYIQWIADNI 183
            PL+     +    GV S+G +  C +   PGVY  ++  ++ WI   I
Sbjct: 186 SPLLC----EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score =  114 bits (289), Expect = 2e-32
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G V   G     L  V+++V  +  C   F    +    N +C G       S   DSGG
Sbjct: 129 GKVTPDGEFPKTLHEVKLTVQKDQVCESQF--QSSYNRANEICVGDSKIKGASFEEDSGG 186

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PL+     K    G+VSYG+       P V+TRV +++ WI   +
Sbjct: 187 PLVC----KRAAAGIVSYGQTDG--SAPQVFTRVLSFVSWIKKTM 225

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score =  115 bits (290), Expect = 2e-32
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
                L        I+++D   C+  +      +    LCAG+L GGKD+C GDSGGPL+
Sbjct: 127 SPNATLPDVPHCANINILDYAVCQAAYKG----LAATTLCAGILEGGKDTCKGDSGGPLI 182

Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
                     G++S G   CA+   PG+YT+V +Y  WI   IS
Sbjct: 183 C----NGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIIS 222

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score =  117 bits (295), Expect = 2e-32
 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 10/117 (8%)

Query: 75  PGCLGSVPG----GGPLSPKLRHVQISVVDNPKCRQIF--SNYGATINENILCAGVLSGG 128
            G +G V G       ++  LR V++ V +   C       N     ++N+ CAG  S  
Sbjct: 213 LGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLK 272

Query: 129 KDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           +D+C GDSGG      P   ++   G+VS+G  C+     G YT+V NY+ WI   +
Sbjct: 273 QDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 327

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score =  114 bits (287), Expect = 4e-32
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 10/103 (9%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
                +S  LR V + ++ N  C  +   YG  + +  +C    +GGK +C GDSGGPL 
Sbjct: 129 DSALGISDVLRQVDVPIMSNADCDAV---YG-IVTDGNICIDS-TGGKGTCNGDSGGPLN 183

Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNI 183
           Y         G+ S+G     E G+P  +TRVT ++ WI    
Sbjct: 184 Y----NGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQT 222

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score =  117 bits (296), Expect = 4e-32
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 85  GPLSPKLRHVQISVVDNPKCRQIF--SNYGATINENILCAGVLSGGKDSCGGDSGGPLM- 141
             ++  LR V++ V +   C       N     ++N+ CAG  S  +D+C GDSGG    
Sbjct: 295 EKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAV 354

Query: 142 -YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
             P   ++   G+VS+G  C+     G YT+V NY+ WI   +
Sbjct: 355 RDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 395

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  119 bits (300), Expect = 5e-32
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G           L+  ++ ++ N  C + +        + + CAG   G  D+C GDSGG
Sbjct: 455 GREKDNER-VFSLQWGEVKLISN--CSKFY--GNRFYEKEMECAGTYDGSIDACKGDSGG 509

Query: 139 PLMYP-LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           PL+    +   Y+ GVVS+G+ C +  FPGVYT+V NY  WI+ ++ 
Sbjct: 510 PLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYHVG 556

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score =  113 bits (285), Expect = 7e-32
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
                    L   ++ +    KC      Y   I E ++CAG  S G D+C GDSGGPL+
Sbjct: 130 SPQENFPNTLNCAEVKIYSQNKCE---RAYPGKITEGMVCAGS-SNGADTCQGDSGGPLV 185

Query: 142 YPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNI 183
                   + G+ S+G   C +   PGVYT++  Y  WI   +
Sbjct: 186 ----CDGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score =  111 bits (280), Expect = 7e-32
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 8/110 (7%)

Query: 76  GCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGD 135
           G +   P       +++ VQ++++ N  C      +   + E++LCAG L GGKD+C GD
Sbjct: 47  GSIEPGPDDFEFPDEIQCVQLTLLQNTFCA---DAHPDKVTESMLCAGYLPGGKDTCMGD 103

Query: 136 SGGPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS 184
           SGGPL+          G+ S+G   C     P +YT++  Y+ WI D I+
Sbjct: 104 SGGPLIC----NGMWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score =  113 bits (285), Expect = 8e-32
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 10/106 (9%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           GS   GG     L+ +++ V    +C +        + ++ +C      G+ +C GDSGG
Sbjct: 126 GSTRLGGNTPNALQEIELIVHPQKQCERDQWR----VIDSHICTL-TKRGEGACHGDSGG 180

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           PL+         IG+VS+G  CA +G P VYTRV++++ WI  N+ 
Sbjct: 181 PLVA----NGAQIGIVSFGSPCA-LGEPDVYTRVSSFVSWINANLK 221

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score =  113 bits (285), Expect = 8e-32
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 9/101 (8%)

Query: 83  GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMY 142
                +  LR VQ+ V  + +C +IF +Y        +C G     K +  GDSGGPL+ 
Sbjct: 131 SMRRGTDTLREVQLRVQRDRQCLRIFGSY---DPRRQICVGDRRERKAAFKGDSGGPLLC 187

Query: 143 PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
                    G+VSYGK       P V+TRV++++ WI   +
Sbjct: 188 ----NNVAHGIVSYGKSSGV--PPEVFTRVSSFLPWIRTTM 222

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score =  112 bits (284), Expect = 9e-32
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G      P S  LR V++ ++D   C      Y     +  +C G  +  + +  GDSGG
Sbjct: 129 GKTGVRDPTSYTLREVELRIMDEKACVD----YRYYEYKFQVCVGSPTTLRAAFMGDSGG 184

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           PL+          G+VSYG   A+   P ++TRV+ Y+ WI   I+
Sbjct: 185 PLLC----AGVAHGIVSYGHPDAK--PPAIFTRVSTYVPWINAVIN 224

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score =  112 bits (284), Expect = 1e-31
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 10/105 (9%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G      P S  L+ V++ ++D   C    S++    +   LC G     K +  GDSGG
Sbjct: 129 GRTGVLKPGSDTLQEVKLRLMDPQAC----SHFRDFDHNLQLCVGNPRKTKSAFKGDSGG 184

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PL+          G+VSYG+  A+   P V+TR+++Y  WI   +
Sbjct: 185 PLLC----AGVAQGIVSYGRSDAK--PPAVFTRISHYRPWINQIL 223

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score =  115 bits (289), Expect = 1e-31
 Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
           G  L   L    +++V+  +C Q+      T+     C         +     G  +   
Sbjct: 224 GTDLGNSLTTRPVTLVEGEECGQV---LNVTVTTRTYCER---SSVAAMHWMDGSVVTRE 277

Query: 144 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
               +++ GV+             + T+V+ Y  W    ++
Sbjct: 278 HRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIMN 317

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score =  112 bits (283), Expect = 2e-31
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 82  PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 141
                    L+ + ISV+   +C      Y   I++ + CAG    G+DSC GDSGGP++
Sbjct: 129 SPQVHFPKVLQCLNISVLSQKRCE---DAYPRQIDDTMFCAGD-KAGRDSCQGDSGGPVV 184

Query: 142 YPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
                   + G+VS+G   CA    PGVYT +  + +WI + I 
Sbjct: 185 C----NGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score =  118 bits (296), Expect = 2e-31
 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 1/101 (0%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
           G   +  L+  Q+ V++N  C +        +    LCAG L+GG DSC GDSGGPL+  
Sbjct: 690 GTFGAGLLKEAQLPVIENKVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCF 748

Query: 144 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
              KY + GV S+G  CA    PGVY RV+ ++ WI   + 
Sbjct: 749 EKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 789

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score =  112 bits (283), Expect = 1e-30
 Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSN------YGATINENILCAGVLSGGKDSCGGDSG 137
               + +L+  ++ V    KC+++                N++CAG    G DSC GDSG
Sbjct: 220 KRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAG-GEKGMDSCKGDSG 278

Query: 138 GPLMYPL---DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           G          TK+Y  G+VS+G +C      G+YTRV NY+ WI   + 
Sbjct: 279 GAFAVQDPNDKTKFYAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQ 325

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score =  109 bits (274), Expect = 3e-30
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 17/106 (16%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G +     ++  L+ + ++VV +                + +C  V       C GDSG 
Sbjct: 128 GLLGRNRGIASVLQELNVTVVTS------------LCRRSNVCTLVRGRQAGVCFGDSGS 175

Query: 139 PLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNI 183
           PL+        I G+ S+ +  CA   +P  +  V  ++ WI   I
Sbjct: 176 PLVC----NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score =  109 bits (274), Expect = 3e-30
 Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 88  SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTK 147
           +  L++    V+DN +C Q +      I E+ +C    S GK  C GDSGGP +     K
Sbjct: 135 TVILQYTYNLVIDNDRCAQEY--PPGIIVESTICGD-TSDGKSPCFGDSGGPFVL--SDK 189

Query: 148 YYIIGVVSYGKKCA-EVGFPGVYTRVTNYIQWIADN 182
             +IGVVS+      E G P  ++RVT+Y+ WI  N
Sbjct: 190 NLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQN 225

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score =  108 bits (273), Expect = 4e-30
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 17/106 (16%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G V    P +  L+ + ++VV                  + +C  V       C GDSGG
Sbjct: 131 GRVGAHDPPAQVLQELNVTVVTF------------FCRPHNICTFVPRRKAGICFGDSGG 178

Query: 139 PLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNI 183
           PL+        I G+ S+    CA   FP  +TRV  Y+ WI   +
Sbjct: 179 PLIC----DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score =  108 bits (272), Expect = 6e-30
 Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           GS   GG LS   R V ++V    +C             N +C GVL+     C GD G 
Sbjct: 129 GSQRSGGRLSRFPRFVNVTVTPEDQC-----------RPNNVCTGVLTRRGGICNGDGGT 177

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           PL+     +    GV S+       G P  +TRV  +  WI   ++
Sbjct: 178 PLVC----EGLAHGVASFSLGPCGRG-PDFFTRVALFRDWIDGVLN 218

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score =  102 bits (255), Expect = 5e-26
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 24/129 (18%)

Query: 80  SVPGGGPLSPKLRHVQISVVDNPKCRQ------------IFSNYGATINENILCAGVLSG 127
                     KL   ++ + +  K                  +    +    LC G +S 
Sbjct: 362 KALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSP 421

Query: 128 --GKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CAEVG--------FPGVYTRVTNY 175
               ++C GDSGGPL+    +++  +GV+S+G    C                +  +   
Sbjct: 422 YADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV 481

Query: 176 IQWIADNIS 184
           + W+ + + 
Sbjct: 482 LPWLKEKLQ 490

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score = 97.3 bits (242), Expect = 3e-24
 Identities = 18/140 (12%), Positives = 45/140 (32%), Gaps = 35/140 (25%)

Query: 79  GSVPGGGPLSP--KLRHVQISV-----VDNPKCRQIFSN----------YGATINENILC 121
             +      +    L   ++++     V+   C ++ S               + +  LC
Sbjct: 363 ELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLC 422

Query: 122 AGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVG----------------- 164
           +G     +  C G+SGG +      +++ +G+VS+G     +G                 
Sbjct: 423 SGTQ-EDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPP 481

Query: 165 FPGVYTRVTNYIQWIADNIS 184
               +  +     W+  ++ 
Sbjct: 482 PRDFHINLFRMQPWLRQHLG 501

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 94.0 bits (233), Expect = 6e-23
 Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 24/128 (18%)

Query: 80  SVPGGGPLSPKLRHVQISVVDNPKC------------RQIFSNYGATINENILCAGVLSG 127
                     KL   ++ + +  K                  +    +    LC G +S 
Sbjct: 604 KALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSP 663

Query: 128 --GKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA----------EVGFPGVYTRVTNY 175
               ++C GDSGGPL+    +++  +GV+S+G                     +  +   
Sbjct: 664 YADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQV 723

Query: 176 IQWIADNI 183
           + W+ + +
Sbjct: 724 LPWLKEKL 731

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 100 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK 159
           D  +     S +  + +       +     D+  G+SG  +   LD    I+GV + G  
Sbjct: 135 DKMRSTGKVSQWEMSGSVTREDTNLAYYTIDTFSGNSGSAM---LDQNQQIVGVHNAGYS 191

Query: 160 CAEVGFPGVYTRVTN-YIQWIADNIS 184
               G      + T  ++++I    +
Sbjct: 192 N---GTINGGPKATAAFVEFINYAKA 214

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica} Length = 218

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 10/28 (35%), Positives = 11/28 (39%)

Query: 130 DSCGGDSGGPLMYPLDTKYYIIGVVSYG 157
           +  GG SGGP      T        SYG
Sbjct: 163 NMTGGSSGGPWFLGNGTGGAQNSTNSYG 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	100.0
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	100.0
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	100.0
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	100.0
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	100.0
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	100.0
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	100.0
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	100.0
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	100.0
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	100.0
1aut_C	250	Activated protein C; serine proteinase, plasma cal	100.0
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	100.0
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	100.0
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	100.0
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	100.0
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	100.0
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	100.0
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	100.0
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	100.0
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	100.0
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	100.0
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	100.0
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	100.0
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	100.0
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	100.0
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	100.0
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	100.0
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	100.0
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	100.0
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	100.0
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	100.0
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	100.0
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	100.0
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	100.0
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	100.0
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	100.0
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	100.0
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	100.0
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	100.0
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	100.0
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	100.0
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	100.0
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	100.0
1elv_A	333	Complement C1S component; trypsin-like serin prote	100.0
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	100.0
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	100.0
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	100.0
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	100.0
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	100.0
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	100.0
1md8_A	329	C1R complement serine protease; innate immunity, a	100.0
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	100.0
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	100.0
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	100.0
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	100.0
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	100.0
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	100.0
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	100.0
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	100.0
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	100.0
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	100.0
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	100.0
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	100.0
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	100.0
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	100.0
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	100.0
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	100.0
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	100.0
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	100.0
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	100.0
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	100.0
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	100.0
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	100.0
1gpz_A	399	Complement C1R component; hydrolase, activation, i	100.0
2aiq_A	231	Protein C activator; snake venom serine proteinase	100.0
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	100.0
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	100.0
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	100.0
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	100.0
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	100.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	100.0
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	100.0
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	100.0
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	100.0
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	100.0
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	100.0
2xrc_A	565	Human complement factor I; immune system, hydrolas	100.0
1a7s_A	225	Heparin binding protein; serine protease homolog,	100.0
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	100.0
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	100.0
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	99.98
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	99.97
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.97
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.94
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	99.93
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.84
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.81
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	99.75
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.7
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.69
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.69
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.69
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.67
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.55
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	99.49
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	99.43
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	99.34
1hpg_A	187	Glutamic acid specific protease; serine protease,	99.05
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	99.0
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.96
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	98.92
3k6y_A	237	Serine protease, possible membrane-associated seri	98.91
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	98.89
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.75
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	98.7
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.69
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.67
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.58
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	98.57
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	98.49
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	98.31
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.05
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.62
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.42
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	96.89
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	96.0
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	95.18
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	92.68
3syj_A	1011	Adhesion and penetration protein autotransporter;	86.47
3h09_A	989	IGA1 protease, immunoglobulin A1 protease; serine	81.58

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=100.00  E-value=5.9e-39  Score=243.71  Aligned_cols=158  Identities=31%  Similarity=0.589  Sum_probs=140.4

Q ss_pred             CceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCC
Q psy17330          8 DSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGG   84 (184)
Q Consensus         8 ~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~   84 (184)
                      ++++++||+|+.   ++|||||||++|+.              ++++++||| ||...  .....+..|+++|||.+...
T Consensus        75 v~~i~~hp~y~~~~~~~DiALl~L~~~~~--------------~~~~v~pic-Lp~~~--~~~~~~~~~~v~GwG~~~~~  137 (235)
T 4dgj_A           75 IDEIVINPHYNRRRKDNDIAMMHLEFKVN--------------YTDYIQPIS-LPEEN--QVFPPGRNCSIAGWGTVVYQ  137 (235)
T ss_dssp             EEEEEECTTCBTTTTBTCCEEEEESSCCC--------------CBTTBCCCB-CCCTT--CCCCTTCEEEEEESSBSSTT
T ss_pred             EEEEEECCCCCCCCCCCeEEEEEECCccc--------------cCCcccccC-CCCcc--cCCCCCCEEEEEecccCCCC
Confidence            678999999955   57999999999998              999999999 77554  23457899999999988777


Q ss_pred             CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCC
Q psy17330         85 GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVG  164 (184)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~  164 (184)
                      +..+..|+...+++++.++|++.+.  ...++++|||++......+.|+||+||||++..+++|+|+||+||+..|+..+
T Consensus       138 ~~~~~~L~~~~~~~~~~~~C~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~Gi~S~g~~c~~~~  215 (235)
T 4dgj_A          138 GTTADILQEADVPLLSNERCQQQMP--EYNITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPN  215 (235)
T ss_dssp             CCBCSBCEEEEEEEECHHHHHHHCT--TSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTT
T ss_pred             CccchhheEeEeeecCHHHhhhhcc--CccCCCCeEeecCCCCCCccCCCCCCCeEEEEECCcEEEEEEEEEcCCCCCCC
Confidence            6678889999999999999998875  23578999999866677789999999999999999999999999999999888


Q ss_pred             CCeEEEeCcchHHHHHhhhC
Q psy17330        165 FPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       165 ~p~vft~v~~~~~WI~~~i~  184 (184)
                      .|++||||+.|++||+++|+
T Consensus       216 ~p~vyt~V~~~~~WI~~~i~  235 (235)
T 4dgj_A          216 RPGVYARVSRFTEWIQSFLH  235 (235)
T ss_dssp             CCEEEEEGGGTHHHHHTTCC
T ss_pred             CCEEEeeHHHHHHHHHHHhC
Confidence            89999999999999999885

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=100.00  E-value=1.1e-38  Score=248.16  Aligned_cols=159  Identities=30%  Similarity=0.595  Sum_probs=137.6

Q ss_pred             CCceEEEcCCCCC-----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSISD-----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y~~-----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~   81 (184)
                      ++.+|++||+|+.     .+|||||||++|+.              |+++++||| ||....  ....+..|+++|||.+
T Consensus       113 ~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~--------------~~~~v~pic-Lp~~~~--~~~~g~~~~v~GWG~t  175 (278)
T 2olg_A          113 GIEETIQHPDYVDGSKDRYHDIALIRLNRQVE--------------FTNYIRPVC-LPQPNE--EVQVGQRLTVVGWGRT  175 (278)
T ss_dssp             CEEEEEECTTCCTTCSSCTTCCEEEEESSCCC--------------CCSSCCCCB-CCCTTC--CCCTTCEEEEEESCCS
T ss_pred             eeEEEEECCCCcCCCCCCCCeEEEEEECCCCc--------------CCCCcCccC-cCCCCC--CcCCCCEEEEEcCCcC
Confidence            4678999999954     47999999999998              999999999 775543  4567899999999998


Q ss_pred             CCCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE-eCCeEEEEEEEEecCCC
Q psy17330         82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKKC  160 (184)
Q Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~-~~~~~~L~Gi~s~~~~c  160 (184)
                      ..+. .+..|+++.+++++.++|.+.+......++++|||++. ....+.|+||+||||++. .+++|+|+||+||+..|
T Consensus       176 ~~~~-~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGGPL~~~~~~~~~~l~GIvS~g~~C  253 (278)
T 2olg_A          176 ETGQ-YSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGG-EKAKDSCGGDSGGPLLAERANQQFFLEGLVSFGATC  253 (278)
T ss_dssp             SSCC-CCSBCEEEEEEBCCGGGGGGGGSSTTCCCCTTEEEECC-TTCTTCCCCCTTCEEEEEEGGGEEEEEEEEEECCBC
T ss_pred             CCCC-ccchhhcccccccCHHHHHHHhccccccCCCceEeeec-CCCCeeCCCccCcceEEEcCCCcEEEEEEEEECCCC
Confidence            7543 56789999999999999998876433468999999984 446789999999999998 67899999999999889


Q ss_pred             CCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        161 AEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       161 ~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +..+.|++||||+.|++||+++|+
T Consensus       254 ~~~~~p~vyt~V~~y~~WI~~~i~  277 (278)
T 2olg_A          254 GTEGWPGIYTKVGKYRDWIEGNIR  277 (278)
T ss_dssp             STTCBCEEEEEGGGGHHHHHTTCC
T ss_pred             CCCCCCcEEeEHHHHHHHHHHhhC
Confidence            987889999999999999999875

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=100.00  E-value=6.8e-39  Score=244.10  Aligned_cols=159  Identities=27%  Similarity=0.477  Sum_probs=138.8

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.+|++||+|+.   .+|||||||++|+.              ++++++||| ||...  .....+..|+++|||.+..
T Consensus        75 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~--~~~~~~~~~~v~GwG~~~~  137 (238)
T 3bg8_A           75 GVQEIIIHDQYKMAESGYDIALLKLETTVN--------------YTDSQRPIS-LPSKG--ERNVIYTDCWVTGWGYRKL  137 (238)
T ss_dssp             EEEEEEECTTCCCGGGSCCCEEEEESSCCC--------------CBTTBCCCB-CCCGG--GGSSCCCCEEEEESCCSSS
T ss_pred             eeEEEEECCCCCCCCCCCcEEEEEECCccc--------------cCCCcccCC-CCCCc--cCcCCCCeEEEEecCCCCC
Confidence            3678999999975   67999999999998              999999999 77543  2346788999999998876


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+..+..|++..+++++.++|++.+.  ...+++.|||++......+.|+||+||||++..+++|+|+||+||+.+|+..
T Consensus       138 ~~~~~~~L~~~~~~~~~~~~C~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~  215 (238)
T 3bg8_A          138 RDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQR  215 (238)
T ss_dssp             SCCCCSBCEEEECCEECHHHHHHHCT--TSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCT
T ss_pred             CCChhhhhcEeeEEEECHHHhhhhhc--CCCCCCCeEeecCCCCCCCcCCCCCCcceEEEECCeEEEEEEEEECCCCCCC
Confidence            66567889999999999999998775  2347899999986556778999999999999999999999999999999887


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|++||||+.|++||+++|+
T Consensus       216 ~~p~vyt~V~~y~~WI~~~~~  236 (238)
T 3bg8_A          216 ERPGVYTNVVEYVDWILEKTQ  236 (238)
T ss_dssp             TCCEEEEEGGGGHHHHHHHHS
T ss_pred             CCCcEEEeHHHHHHHHHHHHh
Confidence            889999999999999999874

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=100.00  E-value=2.1e-38  Score=241.79  Aligned_cols=159  Identities=26%  Similarity=0.495  Sum_probs=139.3

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+++|++||+|+.   .+|||||||++|+.              ++++++||| ||....  ....+..|+++|||.+..
T Consensus        75 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~--~~~~~~~~~v~GwG~~~~  137 (241)
T 2any_A           75 QIKEIIIHQNYKVSEGNHDIALIKLQAPLE--------------YTEFQKPIS-LPSKGD--TSTIYTNCWVTGWGFSKE  137 (241)
T ss_dssp             CEEEEEECTTCCTTSSSSCCEEEEESSCCC--------------CBTTBCCCC-CCCSSC--CSTTCSEEEEEESSCSST
T ss_pred             eeEEEEECCCCCCCCCCCCeEEEEeCCccc--------------CCCCcceeE-cCCccc--CCCCCCeEEEEecccCCC
Confidence            5788999999965   57999999999998              999999999 775442  346789999999999877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+..+..|+++.+++++.++|++.+..  ..+++.+||++......+.|.||+||||++..+++|+|+||+||+.+|+..
T Consensus       138 ~~~~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~c~~~  215 (241)
T 2any_A          138 KGEIQNILQKVNIPLVTNEECQKRYQD--YKITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARR  215 (241)
T ss_dssp             TCCCCSBCEEEEEEEECHHHHHTTSCT--TCSCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCT
T ss_pred             CCCcCchhheeEeEEeCHHHhhhHhcc--CCCCcCcEeecCCCCCCccCCCCCCCcEEEEECCEEEEEEEEEecCCCCCC
Confidence            665678899999999999999987752  247899999985556778999999999999999999999999999999887


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|++||||+.|++||+++|+
T Consensus       216 ~~p~vyt~V~~~~~WI~~~~~  236 (241)
T 2any_A          216 EQPGVYTKVAEYMDWILEKTQ  236 (241)
T ss_dssp             TCCEEEEEGGGGHHHHHHHHS
T ss_pred             CCCeEEEEHHHhHHHHHHHhh
Confidence            889999999999999999874

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=100.00  E-value=3.7e-39  Score=244.98  Aligned_cols=160  Identities=28%  Similarity=0.510  Sum_probs=138.7

Q ss_pred             CCceEEEcCCCCC-----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSISD-----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y~~-----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~   81 (184)
                      ++.+|++||+|+.     .+|||||||++|+.              ++++++||| ||..+.......+..++++|||.+
T Consensus        69 ~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-L~~~~~~~~~~~~~~~~v~GwG~~  133 (235)
T 2wph_S           69 NVIRIIPHHNFNAAINTYNHDIALLELDEPLV--------------LNSYVTPIC-IADKEYTNIFLKFGSGYVSGWGRV  133 (235)
T ss_dssp             EEEEEEECTTTTSSSSCCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCHHHHHHHHHTCEEEEEESSBS
T ss_pred             eeEEEEeCCCCcccCCcCCCCEEEEEECCcCc--------------CCCCccccC-CCCCcccccccCCccEEEEeCCCc
Confidence            4678999999965     46999999999998              999999999 775432222345788999999998


Q ss_pred             CCCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC
Q psy17330         82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA  161 (184)
Q Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~  161 (184)
                      ...+..+..|+...+++++.++|.+.+.   ..++++|||++......+.|+||+||||++..+++|+|+||+||+..|+
T Consensus       134 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~  210 (235)
T 2wph_S          134 FHKGRSALVLQYLRVPLVDRATCLRSTK---FTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECA  210 (235)
T ss_dssp             STTSCBCSBCEEEEEEEECHHHHHHTCS---SCCCTTEEEESCTTCSCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSS
T ss_pred             cCCCCccchheEeeeeeeCHHHhcCccc---CCCCCCEEEeCCCCCCCccCCCCCCCceEEeECCeEEEEEEEEECCCCC
Confidence            7766667889999999999999988765   5678999999855667789999999999999999999999999999999


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..+.|++||||+.|++||+++++
T Consensus       211 ~~~~p~vyt~V~~~~~WI~~~~~  233 (235)
T 2wph_S          211 MKGKYGIYTKVSRYVNWIKEKTK  233 (235)
T ss_dssp             CTTCCEEEEEGGGGHHHHHHHCC
T ss_pred             CCCCCeEEEEHHHhHHHHHHHHh
Confidence            87889999999999999999875

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=100.00  E-value=1e-38  Score=242.95  Aligned_cols=156  Identities=33%  Similarity=0.589  Sum_probs=137.5

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.+|++||+|+.   .+|||||||++|+.              |+++++||| ||....    ..+..++++|||.+..
T Consensus        78 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~----~~~~~~~v~GwG~~~~  138 (237)
T 2f91_A           78 TVSKIILHENFDYNLLDNDISLLKLSGSLT--------------FNDNVAPIA-LPEQGH----TATGDVIVTGWGTTSE  138 (237)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCTTC----CCCSEEEEEESCCSST
T ss_pred             EEEEEEECCCCCCCCCCCcEEEEEECCCcc--------------cCCceeecc-CCCCCC----CCCCcEEEEECCcCCC
Confidence            4678999999965   67999999999998              999999999 775432    5678999999999877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+..+..|+++.+++++.++|+..+.  ...++++|||++......+.|+||+||||++..+++|+|+||+||+..|+..
T Consensus       139 ~~~~~~~L~~~~~~~~~~~~C~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~  216 (237)
T 2f91_A          139 GGNTPDVLQKVTVPLVSDEDCRADYG--ADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARP  216 (237)
T ss_dssp             TCCCCSBCEEEEEEEECHHHHHHHHC--TTTSCTTEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEEEEEEEESSSSCT
T ss_pred             CCCccceeeEEEEeEcCHHHhhhhhC--CCCcCCCeEEEecCCCCCCCCCCcCCCCeEEecCCCEEEEEEEEecCCCCCC
Confidence            66667889999999999999988764  2357899999986566788999999999999999999999999999999987


Q ss_pred             CCCeEEEeCcchHHHHHhhh
Q psy17330        164 GFPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i  183 (184)
                      +.|++||||+.|++||+++|
T Consensus       217 ~~p~vyt~V~~~~~WI~~~~  236 (237)
T 2f91_A          217 GYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             TCCEEEEEGGGSHHHHHHHC
T ss_pred             CCCcEEEEHHHhHHHHHHhc
Confidence            88999999999999999986

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=100.00  E-value=3.3e-38  Score=239.37  Aligned_cols=160  Identities=30%  Similarity=0.582  Sum_probs=137.9

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.+|++||+|+.   .+|||||||++|+.              |+++++||| ||....  ....+..++++|||.+..
T Consensus        68 ~v~~i~~hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-Lp~~~~--~~~~~~~~~v~GwG~~~~  130 (232)
T 2oq5_A           68 GLRRIIVHEKYKHPSHDYDISLAELSSPVP--------------YTNAVHRVC-LPDASY--EFQPGDVMFVTGFGALKN  130 (232)
T ss_dssp             EEEEEEECTTCCTTCCTTCCEEEEESSCCC--------------CCSSSCCCB-CCCTTC--CCCTTCEEEEEESCCSST
T ss_pred             eEEEEEeCCCCCCCCCCCCEEEEEecCCCc--------------cCCceeEeE-CCCccc--cCCCCCEEEEEECCccCC
Confidence            4678999999965   66999999999998              999999999 775442  345789999999999877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE-eCCeEEEEEEEEecCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~-~~~~~~L~Gi~s~~~~c~~  162 (184)
                      .+..+..|+++.+++++.++|.+.+. +...++++|||++......+.|+||+||||++. .+++|+|+||+||+..|+.
T Consensus       131 ~~~~~~~L~~~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~GI~S~g~~C~~  209 (232)
T 2oq5_A          131 DGYSQNHLRQAQVTLIDATTCNEPQA-YNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAK  209 (232)
T ss_dssp             TCCCCSBCEEEEEEEECHHHHTSTTT-TTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSB
T ss_pred             CCCCCceeeEeEEEEeCHHHcCCccc-cCCccCCCEEeecCCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEeCCCCCC
Confidence            66667889999999999999987643 335678999999865566789999999999997 4789999999999999987


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++++
T Consensus       210 ~~~p~vyt~V~~~~~WI~~~~~  231 (232)
T 2oq5_A          210 PNKPGVYTRVTALRDWITSKTG  231 (232)
T ss_dssp             TTBCEEEEETGGGHHHHHHHHC
T ss_pred             CCCCeEEEEhHHhHHHHHHHhC
Confidence            7789999999999999999874

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=100.00  E-value=3.4e-38  Score=240.19  Aligned_cols=158  Identities=32%  Similarity=0.556  Sum_probs=139.9

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||+|+.   ++|||||||++|+.              ++++++||| ||...  .....+..|+++|||.+..
T Consensus        79 ~v~~i~~hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-lp~~~--~~~~~~~~~~v~GwG~~~~  141 (241)
T 3ncl_A           79 RLKRIISHPFFNDFTFDYDIALLELEKPAE--------------YSSMVRPIS-LPDAS--HVFPAGKAIWVTGWGHTQY  141 (241)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CCSSCCCCB-CCCTT--CCCCTTCEEEEEESSBSST
T ss_pred             EEEEEEECCCCCCCCCCCcEEEEEECCCCc--------------ccCccCceE-cCCcc--cCCCCCCEEEEEEecccCC
Confidence            3678999999965   56999999999998              999999999 77554  3345789999999999887


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE-eCCeEEEEEEEEecCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~-~~~~~~L~Gi~s~~~~c~~  162 (184)
                      .+.....|+...+++++.++|+..+.   ..++++++|++......+.|+||+||||++. .+++|+|+||+||+.+|+.
T Consensus       142 ~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~~l~Gi~S~g~~c~~  218 (241)
T 3ncl_A          142 GGTGALILQKGEIRVINQTTCENLLP---QQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQ  218 (241)
T ss_dssp             TSCBCSBCEEEEEEECCHHHHHHHST---TTCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSC
T ss_pred             CCCcCceeeEEeEEEECHHHhhhhcc---cCCCCCeEEeCCCCCCCccCCCcCCCCEEEEcCCCcEEEEEEEEECCCCCC
Confidence            76667889999999999999998876   5789999999866677889999999999986 5789999999999999998


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++++
T Consensus       219 ~~~p~vyt~v~~y~~WI~~~~~  240 (241)
T 3ncl_A          219 RNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             TTCCEEEEESGGGHHHHHHHHC
T ss_pred             CCCCeEEEEHHHHHHHHHHHhC
Confidence            8899999999999999999874

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=100.00  E-value=3.3e-38  Score=252.37  Aligned_cols=157  Identities=27%  Similarity=0.474  Sum_probs=136.3

Q ss_pred             CCceEEEcCCCCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCC
Q psy17330          7 PDSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGP   86 (184)
Q Consensus         7 ~~~~i~~Hp~y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~   86 (184)
                      ++++|++||+|+ .+|||||||++|+.              |+++|+||| ||..+   ....+..++++|||.+..+. 
T Consensus       173 ~V~~i~~HP~y~-~nDIALlkL~~~v~--------------~~~~v~Pic-Lp~~~---~~~~g~~~~v~GWG~~~~~~-  232 (347)
T 4f4o_C          173 EIEKVIFHPDNS-TVDIGLIKLKQKVP--------------VNERVMPIC-LPSKD---YVNVGLVGYVSGWGRNANLN-  232 (347)
T ss_dssp             CEEEEEECSCTT-TCCCEEEEESSCCC--------------CSSSCCCCB-CCSSC---CCCTTCEEEEEECSBCTTSS-
T ss_pred             EEEEEEECcCCC-CCCEEEEEECCCcc--------------CCCceeeee-cCccc---cCCCCcEEEEeccccCCCCC-
Confidence            578999999997 47999999999999              999999999 88554   34678999999999976654 


Q ss_pred             CCcCceEEEEEeeCccccccccccc--------------CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE--eCCeEEE
Q psy17330         87 LSPKLRHVQISVVDNPKCRQIFSNY--------------GATINENILCAGVLSGGKDSCGGDSGGPLMYP--LDTKYYI  150 (184)
Q Consensus        87 ~~~~l~~~~~~~~~~~~C~~~~~~~--------------~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~--~~~~~~L  150 (184)
                      .+..|+++.+++++.++|++.+...              ...++++||||+......+.|+||+||||++.  .+++|+|
T Consensus       233 ~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv~~~~~~~~~~l  312 (347)
T 4f4o_C          233 FTEHLKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYA  312 (347)
T ss_dssp             BCSSCEEEEEEEECHHHHHHHHSSCSSGGGCCCCCSSSSCCCCSTTEEEECCCTTCCCCCTTCTTCEEEEEETTTTEEEE
T ss_pred             CCccceEEEEEEeCHHHHHHHhccccccccccccccccccccccCCeEEecCCCCCCCCCCCCCCcceEEEeCCCCEEEE
Confidence            5788999999999999998876521              23478999999877778899999999999996  5689999


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       151 ~Gi~s~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +||+||+.+|.. +.|++||||+.|++||+++|+
T Consensus       313 vGIvS~G~~C~~-~~pgVYTrVs~y~~WI~~~i~  345 (347)
T 4f4o_C          313 AGILSFDKSCRT-AEYGVYVRVTSILDWIQTTIA  345 (347)
T ss_dssp             EEEEEECCCTTT-SSCEEEEEHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCC-CCCeEEEEHHHHHHHHHHHHH
Confidence            999999999975 569999999999999999985

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=100.00  E-value=2.3e-38  Score=241.48  Aligned_cols=160  Identities=28%  Similarity=0.539  Sum_probs=139.2

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCce-eccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFR-LDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~-~~~~~~~~~~~~Gwg~~~   82 (184)
                      ++.+|++||+|+.   .+|||||||++|+.              |+++++||| ||..... .....+..|+++|||.+.
T Consensus        70 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~~~~~~~~~~~~~v~GwG~~~  134 (241)
T 2jkh_A           70 EVEVVIKHNRFTKETYDFDIAVLRLKTPIT--------------FRMNVAPAC-LPERDWAESTLMTQKTGIVSGFGRTH  134 (241)
T ss_dssp             CEEEEEECTTCBTTTTBTCCEEEEESSCCC--------------CBTTBCCCB-CCCHHHHHHHTTTSSEEEEEESCBSS
T ss_pred             EeEEEEeCCCCCCCCCCCcEEEEEECCccc--------------CCCCEeeeE-cCCCCcccccccCCCeEEEEecCCCC
Confidence            5678999999965   67999999999998              999999999 7754322 234578999999999987


Q ss_pred             CCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      ..+..+..|+...+++++.++|+..+.   ..++++|||++......+.|.||+||||++..+++|+|+||+||+.+|+.
T Consensus       135 ~~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~  211 (241)
T 2jkh_A          135 EKGEQSTRLKMLEVPYVDRNSCKLSSS---FIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCAR  211 (241)
T ss_dssp             TTSCBCSBCEEEEEEEECHHHHHHHCS---SCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEEEECSSSSC
T ss_pred             CCCCcCccccEeeeccccHHHhccccc---CcCCCCeEEeeCCCCCCccCcCcCCCeeEEEECCEEEEEEEEEECCCCCC
Confidence            766667789999999999999988765   46889999998555667899999999999999999999999999999988


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       212 ~~~p~vyt~V~~~~~WI~~~~~  233 (241)
T 2jkh_A          212 KGKYGIYTKVTAFLKWIDRSMK  233 (241)
T ss_dssp             TTCCEEEEEGGGGHHHHHHHTC
T ss_pred             CCCceEEEEhHHHHHHHHHHhc
Confidence            7889999999999999999875

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=100.00  E-value=2e-38  Score=243.21  Aligned_cols=160  Identities=31%  Similarity=0.581  Sum_probs=136.5

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCce--eccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFR--LDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~--~~~~~~~~~~~~Gwg~~   81 (184)
                      .+.+|++||+|+.   .+|||||||++|+.              ++++++||| ||.....  .....+..|+++|||.+
T Consensus        70 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~~~~~~~~~g~~~~v~GwG~~  134 (250)
T 1aut_C           70 DIKEVFVHPNYSKSTTDNDIALLHLAQPAT--------------LSQTIVPIC-LPDSGLAERELNQAGQETLVTGWGYH  134 (250)
T ss_dssp             EEEEEEECTTCBTTTTBTCCEEEEESSCCC--------------CBTTBCCCB-CCCHHHHHHTTTSTTCEEEEEECCCC
T ss_pred             EEEEEEECCCCCCCCCCCcEEEEEECCccc--------------CCCceeeeE-cCCCccccccccCCCCEEEEEEeCCC
Confidence            4678999999965   57999999999998              999999999 7754321  12357899999999987


Q ss_pred             CCCCCCC-----cCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEe
Q psy17330         82 PGGGPLS-----PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSY  156 (184)
Q Consensus        82 ~~~~~~~-----~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~  156 (184)
                      ...+...     ..|+.+.+++++.++|++.+.   ..++++|||++......+.|+||+||||++..+++|+|+||+||
T Consensus       135 ~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~---~~~~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~g~~~l~GI~S~  211 (250)
T 1aut_C          135 SSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS---NMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSW  211 (250)
T ss_dssp             CSCCSCCCSSCSSBCEEEEEEEECHHHHHHHCS---SCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEE
T ss_pred             CCCCccccccccceeeEEEEEEecHHHhhHHhc---cCCCCCEEEeCCCCCCCCCCCCCCchheEEEECCeEEEEEEEEE
Confidence            6554322     379999999999999998775   46789999998555667899999999999999999999999999


Q ss_pred             cCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        157 GKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       157 ~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.+|+..+.|++||||+.|++||+++|+
T Consensus       212 g~~C~~~~~p~vyt~V~~y~~WI~~~~~  239 (250)
T 1aut_C          212 GEGCGLLHNYGVYTKVSRYLDWIHGHIR  239 (250)
T ss_dssp             CSSSSCTTCCEEEECGGGTHHHHHHHHC
T ss_pred             CCCCCCCCCCEEEEEHHHHHHHHHHHhh
Confidence            9999987889999999999999999874

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=100.00  E-value=2.8e-38  Score=241.81  Aligned_cols=156  Identities=24%  Similarity=0.533  Sum_probs=136.0

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||+|+.   .+|||||||++|+.              |+++++||| ||....  ....+..|+++|||.+..
T Consensus        84 ~v~~i~~hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-Lp~~~~--~~~~~~~~~v~GwG~~~~  146 (245)
T 1t8o_A           84 KIAKVFKNSKYNSLTINNDITLLKLSTAAS--------------FSQTVSAVC-LPSASD--DFAAGTTCVTTGWGLTRY  146 (245)
T ss_dssp             EEEEEEECTTCCTTTCCSCCEEEEESSCCC--------------CBTTBCCCB-CCCTTC--CCCTTCEEEEEESCCSCC
T ss_pred             EEEEEEeCCCCCCCCCCCCEEEEEECCCCc--------------CCCceeeeE-CCCCcc--CCCCCCEEEEEEeCCCCC
Confidence            4678999999965   67999999999998              999999999 776542  345789999999998876


Q ss_pred             CCC-CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         84 GGP-LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        84 ~~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      .+. .+..|+++.+++++.++|++.+.   ..+++.|||++  ....+.|+||+||||++..+++|+|+||+||+..|+.
T Consensus       147 ~~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~--~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~c~~  221 (245)
T 1t8o_A          147 TNANTPDRLQQASLPLLSNTNCKKYWG---TKIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCS  221 (245)
T ss_dssp             --CCCCSBCEEEEEEEECHHHHHHHHG---GGCCTTEEEEE--CSSCBCCTTCTTCEEEEEETTEEEEEEEEEECCTTCC
T ss_pred             CCCCCcchheEEEEeeEcchhhhHhhc---CcCCCceEEcc--CCCCccCcccCcCCEEEEECCEEEEEEEEEeCCCCCC
Confidence            543 56789999999999999998775   46789999998  5667899999999999999999999999999999988


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       222 ~~~p~vyt~V~~~~~WI~~~~~  243 (245)
T 1t8o_A          222 TSTPGVYARVTALVNWVQQTLA  243 (245)
T ss_dssp             TTSEEEEEEGGGTHHHHHHHHH
T ss_pred             CCCCEEEEEHHHHHHHHHHHHc
Confidence            7889999999999999999873

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=100.00  E-value=4.7e-38  Score=240.37  Aligned_cols=160  Identities=31%  Similarity=0.559  Sum_probs=136.4

Q ss_pred             CCCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          6 GPDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         6 ~~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      -++++|++||+|+.   .+|||||||++|+.              |+++++||| ||....  ....+..|+++|||.+.
T Consensus        72 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~--~~~~~~~~~v~GwG~~~  134 (245)
T 2f9n_A           72 LPVSRIIVHPQFYIIQTGADIALLELEEPVN--------------ISSRVHTVM-LPPASE--TFPPGMPCWVTGWGDVD  134 (245)
T ss_dssp             BCEEEEEECTTCCSSCCTTCCEEEEESSCCC--------------CCSSSCCCB-CCCTTC--CCCTTCCEEEEESCCSB
T ss_pred             EEEEEEEECCCccCCCCCCcEEEEEeCCCCc--------------CCCCccccC-CCCccc--CCCCCCEEEEEEeCCCC
Confidence            36789999999964   67999999999998              999999999 775442  34578999999999887


Q ss_pred             CCCCC--CcCceEEEEEeeCcccccccccccC------CCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEE
Q psy17330         83 GGGPL--SPKLRHVQISVVDNPKCRQIFSNYG------ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVV  154 (184)
Q Consensus        83 ~~~~~--~~~l~~~~~~~~~~~~C~~~~~~~~------~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~  154 (184)
                      ..+..  +..|+.+.+++++.++|+..+....      ..++++|||++  ....+.|+||+||||++..+++|+|+||+
T Consensus       135 ~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~Ca~--~~~~~~C~GDSGgPL~~~~~g~~~l~GI~  212 (245)
T 2f9n_A          135 NDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCKVNGTWLQAGVV  212 (245)
T ss_dssp             TTBCCCTTCBCEEEECCEECHHHHHHHHHTTCCSCTTSCCSCTTEEEEC--CSSSBCCTTCTTCEEEEEETTEEEEEEEE
T ss_pred             CCCCCCccccceEEEEEEcCHHHhhhhhcccccccccccccccccEeec--CCCCCcCCCCCCCceEEEECCEEEEEEEE
Confidence            65433  3479999999999999988765211      24789999998  45678999999999999999999999999


Q ss_pred             EecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        155 SYGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       155 s~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ||+.+|+..+.|++||||+.|++||+++++
T Consensus       213 S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  242 (245)
T 2f9n_A          213 SWGEGCAQPNRPGIYTRVTYYLDWIHHYVP  242 (245)
T ss_dssp             EECSSSSBTTBCEEEEEGGGGHHHHHHHSC
T ss_pred             EeCCCCCCCCCCeEEEEHHHHHHHHHHHhh
Confidence            999999887889999999999999999874

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=100.00  E-value=6.5e-38  Score=239.16  Aligned_cols=159  Identities=32%  Similarity=0.508  Sum_probs=136.5

Q ss_pred             CCceEEEcCCCCC---C--CCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSISD---D--SHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~--~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~   81 (184)
                      .+.+|++||+|+.   .  +|||||||++|+.              ++++++||| ||....  ....+..|+++|||.+
T Consensus        73 ~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~--~~~~~~~~~v~GwG~~  135 (241)
T 1bru_P           73 KVSKLVVHQDWNSNQLSNGNDIALLKLASPVS--------------LTDKIQLGC-LPAAGT--ILPNNYVCYVTGWGRL  135 (241)
T ss_dssp             EEEEEEECTTCCTTCGGGCCCCEEEEESSCCC--------------CCSSCCCCB-CCCTTC--CCCTTCEEEEEESCCS
T ss_pred             EEEEEEECCCCCCCCCCCCCcEEEEEeCCCcc--------------cCCccCCcc-cCCCcC--CCCCCCEEEEEEcccc
Confidence            4678999999965   3  8999999999998              999999999 775542  3457889999999998


Q ss_pred             CCCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEe-CCeEEEEEEEEecC--
Q psy17330         82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGK--  158 (184)
Q Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-~~~~~L~Gi~s~~~--  158 (184)
                      ...+..+..|+++.+++++.++|.+.+. ++..++++|||++ .....+.|+||+||||++.. +++|+|+||+||+.  
T Consensus       136 ~~~~~~~~~L~~~~~~i~~~~~C~~~~~-~~~~~~~~~~Ca~-~~~~~~~C~GDSGgPL~~~~~~g~~~l~Gi~S~g~~~  213 (241)
T 1bru_P          136 QTNGASPDILQQGQLLVVDYATCSKPGW-WGSTVKTNMICAG-GDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSL  213 (241)
T ss_dssp             STTSCCCSBCEEEEEEEECHHHHTSTTT-TGGGCCTTEEEEC-CSSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTT
T ss_pred             CCCCCCCccceeCEEEEecHHHhCcccc-cCCcCCCceEeec-CCCCCccCCCCCCCcEEEECCCCCEEEEEEEEEcCCC
Confidence            7666667889999999999999988632 2246789999998 45667899999999999996 88999999999997  


Q ss_pred             CCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        159 KCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       159 ~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +|...+.|++||||+.|++||+++|+
T Consensus       214 ~C~~~~~p~vyt~V~~~~~WI~~~i~  239 (241)
T 1bru_P          214 GCNYYHKPSVFTRVSNYIDWINSVIA  239 (241)
T ss_dssp             BSSCTTCCEEEEEGGGSHHHHHHHHH
T ss_pred             CCCCCCCCcEEEEHHHhHHHHHHHHh
Confidence            78877889999999999999999873

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=100.00  E-value=7.6e-38  Score=244.90  Aligned_cols=160  Identities=28%  Similarity=0.491  Sum_probs=135.5

Q ss_pred             CceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCC
Q psy17330          8 DSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGG   84 (184)
Q Consensus         8 ~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~   84 (184)
                      +.+|++||+|+.   .+|||||||++++.              |+++++||| ||.... .....+..|+++|||.+...
T Consensus        84 V~~i~~Hp~y~~~~~~nDIALl~L~~~v~--------------~~~~v~Pic-Lp~~~~-~~~~~~~~~~v~GWG~~~~~  147 (290)
T 1fiw_A           84 VEKIIIHEKYSASSEANDIALMKITPPVT--------------CGHFIGPGC-LPQFRA-GPPRVPQTCWVAGWGFLQEN  147 (290)
T ss_dssp             EEEEEECTTCBTTTTBTCCEEEEEESCCC--------------CBTTBCCCB-CCCTTC-CSCCSSCEEEEEESCCSSTT
T ss_pred             EEEEEECCCCCCCCCCCCEEEEEECCccc--------------cCCcccccc-CCCccc-cCcCCCCeEEEEEeccCCCC
Confidence            678999999965   67999999999998              999999999 775432 12235789999999988765


Q ss_pred             CC-CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEe--CCeEEEEEEEEecCCCC
Q psy17330         85 GP-LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL--DTKYYIIGVVSYGKKCA  161 (184)
Q Consensus        85 ~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~--~~~~~L~Gi~s~~~~c~  161 (184)
                      +. .+..|+++.+++++.++|+..+. +...++++|||++......+.|+||+||||++..  +++|+|+||+||+.+|+
T Consensus       148 ~~~~~~~L~~~~v~i~~~~~C~~~~~-~~~~i~~~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~  226 (290)
T 1fiw_A          148 ARRTSPMLQEARVDLIDLGLCNSTRW-YNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCA  226 (290)
T ss_dssp             CSSCCSBCEEEEEEEECHHHHTSTTT-TTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECSSSSCEEEEEEEEECSSSS
T ss_pred             CCCCCceeeEEEEEEecHHHhccccc-cCCcCCCCEEEEecCCCCCeeCCCCCchheEEEECCCCCEEEEEEEEECCCCC
Confidence            43 45689999999999999987532 2346889999998656667899999999999985  68999999999999999


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..+.|++||||+.|++||+++|+
T Consensus       227 ~~~~p~vyt~V~~y~~WI~~~~~  249 (290)
T 1fiw_A          227 RAKRPGVYTSTWSYLNWIASKIG  249 (290)
T ss_dssp             BTTBCEEEEESGGGHHHHHHHHC
T ss_pred             CCCCCeEEEEHHHhHHHHHHHhC
Confidence            87889999999999999999874

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=100.00  E-value=1e-37  Score=238.65  Aligned_cols=158  Identities=25%  Similarity=0.517  Sum_probs=139.0

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      +++++++||+|+.   .+|||||||++++.              ++++++||| ||....    ..+..|+++|||.+..
T Consensus        86 ~v~~i~~hp~y~~~~~~~DIAll~L~~~~~--------------~~~~v~pic-Lp~~~~----~~~~~~~v~GwG~~~~  146 (251)
T 3gov_B           86 GVKHTTLHPQYDPNTFENDVALVELLESPV--------------LNAFVMPIC-LPEGPQ----QEGAMVIVSGWGKQFL  146 (251)
T ss_dssp             CEEEEEECTTCBTTTTBTCCEEEEESSCCC--------------CSSSCCCCB-CCSSCC----CTTCEEEEEECSCCTT
T ss_pred             eeEEEEECCCCCCCCCCCCEEEEEeCCccc--------------CCCceEEeE-CCCCCC----CCCCEEEEEcCCCCCC
Confidence            4788999999965   56999999999998              999999999 775442    5789999999998766


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE--eCCeEEEEEEEEecCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP--LDTKYYIIGVVSYGKKCA  161 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~--~~~~~~L~Gi~s~~~~c~  161 (184)
                      .. .+..|++..+++++.++|++.+......++++|||++......+.|+||+||||++.  .+++|+|+||+||+.+|+
T Consensus       147 ~~-~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~  225 (251)
T 3gov_B          147 QR-FPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCG  225 (251)
T ss_dssp             SC-CCSBCEEEEEEEECHHHHHHHTTTTTCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSS
T ss_pred             CC-CCccceEEeeEEECHHHhhhhhhhccCCCCCCcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEECCCCC
Confidence            53 677899999999999999998875445789999999866667889999999999998  678999999999999999


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..+.|++||||+.|++||+++++
T Consensus       226 ~~~~p~vyt~V~~~~~WI~~~~~  248 (251)
T 3gov_B          226 KKDRYGVYSYIHHNKDWIQRVTG  248 (251)
T ss_dssp             CSSCCEEEEETTTTHHHHHHHHC
T ss_pred             CCCCCEEEEEHHHhHHHHHHHhc
Confidence            88889999999999999999875

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=100.00  E-value=2.1e-37  Score=237.45  Aligned_cols=160  Identities=30%  Similarity=0.566  Sum_probs=135.0

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEecee----cccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeec
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQR----KKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLG   79 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~----~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg   79 (184)
                      .+.+|++||+|+.   .+|||||||++|    +.              ++++++||| ||..+  .....+..|+++|||
T Consensus        78 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~--------------~~~~v~pic-Lp~~~--~~~~~~~~~~v~GwG  140 (252)
T 1rtf_B           78 EVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQ--------------ESSVVRTVC-LPPAD--LQLPDWTECELSGYG  140 (252)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEECCSSSCCSC--------------CBTTBCCCB-CCCTT--CCCCTTCEEEEEESC
T ss_pred             EEEEEEeCCCCCcCCCCCCEEEEEECCccccccc--------------cCCceecee-CCCcc--ccCCCCCEEEEEEcC
Confidence            4678999999965   579999999999    66              889999999 77544  234578899999999


Q ss_pred             ccCCCC-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCC------CCCCCCCCCCeeEEEeCCeEEEEE
Q psy17330         80 SVPGGG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGG------KDSCGGDSGGPLMYPLDTKYYIIG  152 (184)
Q Consensus        80 ~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~------~~~c~~d~G~pl~~~~~~~~~L~G  152 (184)
                      .+...+ ..+..|++..+++++.++|...+. ....++++|||++.....      .+.|+||+||||++..+++|+|+|
T Consensus       141 ~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~~~~~~l~G  219 (252)
T 1rtf_B          141 KHEALSPFYSERLKEAHVRLYPSSRCTSQHL-LNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVG  219 (252)
T ss_dssp             CSSTTCSSCCSBCEEEEEEECCGGGSSTTTT-TTCCCCTTEEEEECCC------CCCBCCTTCTTCEEEEEETTEEEEEE
T ss_pred             CCCCCCccccchheEeeeEEecHHHhhhhhc-cCCCCCCCEEEecCCCCCCccCCCCccccCCCcCceEEEeCCcEEEEE
Confidence            887553 346789999999999999988653 234678999999854433      689999999999999999999999


Q ss_pred             EEEecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        153 VVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       153 i~s~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      |+||+.+|+..+.|++||||+.|++||+++|+
T Consensus       220 i~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  251 (252)
T 1rtf_B          220 IISWGLGCGQKDVPGVYTKVTNYLDWIRDNMR  251 (252)
T ss_dssp             EEEECSSSSCTTCCEEEEEGGGGHHHHHHHCC
T ss_pred             EEEEcCCCCCCCCCeEEEEHHHHHHHHHHhcC
Confidence            99999999887889999999999999999875

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=100.00  E-value=1.9e-38  Score=248.18  Aligned_cols=160  Identities=27%  Similarity=0.485  Sum_probs=134.8

Q ss_pred             CCceEEEcCCCCC----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCce-eccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSISD----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFR-LDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y~~----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~-~~~~~~~~~~~~Gwg~~   81 (184)
                      ++.+|++||+|+.    .+|||||||++|+.              |+++|+||| ||..+.. .....+..|+++|||.+
T Consensus       110 ~v~~i~~Hp~y~~~~~~~~DIALl~L~~pv~--------------~~~~v~pic-Lp~~~~~~~~~~~g~~~~v~GWG~~  174 (289)
T 2bdy_A          110 MLEKIYIHPRYNWRENLDRDIALMKLKKPVA--------------FSDYIHPVC-LPDRETAASLLQAGYKGRVTGWGNL  174 (289)
T ss_dssp             EEEEEEECTTCBTTTTCBTCCEEEEESSCCC--------------CBTTBCCCB-CCCHHHHHHHCCTTCEEEEEESSCS
T ss_pred             eeEEEEECCCCCCCCCCCCeEEEEEECCccc--------------cCCcccccC-CCCccccccccCCCCEEEEECCCcC
Confidence            4678999999963    57999999999998              999999999 7754322 12467899999999987


Q ss_pred             CCCC-----C-CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecC---CCCCCCCCCCCCeeEEEe--CCeEEE
Q psy17330         82 PGGG-----P-LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS---GGKDSCGGDSGGPLMYPL--DTKYYI  150 (184)
Q Consensus        82 ~~~~-----~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~---~~~~~c~~d~G~pl~~~~--~~~~~L  150 (184)
                      ....     . .+..|+.+.+++++.++|...+.   ..++++||||+...   ...+.|+||+||||++..  +++|+|
T Consensus       175 ~~~~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~---~~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~~~~~~~l  251 (289)
T 2bdy_A          175 KETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR---IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQ  251 (289)
T ss_dssp             SCC-------CCCSBCEEEEEEBCCHHHHHHTCS---SCCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECTTTCCEEE
T ss_pred             CCccccCccccccccceEEEEEEECHHHhhcccc---CcCCCCEEeccCCCCCCCCCccCCCCCccceEEEECCCCCEEE
Confidence            6542     1 25689999999999999998765   56899999998432   356899999999999997  889999


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       151 ~Gi~s~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +||+||+.+|+..+.|++||||+.|++||+++|+
T Consensus       252 ~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  285 (289)
T 2bdy_A          252 MGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID  285 (289)
T ss_dssp             EEEEEECSSSSCTTCCEEEEETGGGHHHHHHHHH
T ss_pred             EEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHH
Confidence            9999999999987889999999999999999873

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=100.00  E-value=1.4e-37  Score=251.10  Aligned_cols=160  Identities=28%  Similarity=0.530  Sum_probs=138.4

Q ss_pred             CCceEEEcCCC------CC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEe
Q psy17330          7 PDSSLHVIPSI------SD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGC   77 (184)
Q Consensus         7 ~~~~i~~Hp~y------~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~G   77 (184)
                      ++.+|++||+|      +.   .+|||||||++|+.              |+++++||| ||....  ....+..|+++|
T Consensus       188 ~V~~i~~Hp~y~~~~~~~~~~~~nDIALlkL~~pv~--------------~~~~v~Pic-Lp~~~~--~~~~g~~~~v~G  250 (372)
T 1z8g_A          188 GVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLP--------------LTEYIQPVC-LPAAGQ--ALVDGKICTVTG  250 (372)
T ss_dssp             CEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCC--------------CCSSCCCCB-CCCTTC--CCCTTCEEEEEE
T ss_pred             EEEEEEECCCccccccCCCCCCCccEEEEEECCCCC--------------CCCceeccc-cCCccc--CCCCCCEEEEEe
Confidence            57899999999      33   56999999999998              999999999 786542  346789999999


Q ss_pred             ecccCCCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeC----CeEEEEEE
Q psy17330         78 LGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLD----TKYYIIGV  153 (184)
Q Consensus        78 wg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~----~~~~L~Gi  153 (184)
                      ||.+...+..+..|+++.+++++.++|+.... +...++++||||+......+.|+||+||||++..+    ++|+|+||
T Consensus       251 WG~t~~~~~~~~~L~~~~v~ii~~~~C~~~~~-~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGI  329 (372)
T 1z8g_A          251 WGNTQYYGQQAGVLQEARVPIISNDVCNGADF-YGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGI  329 (372)
T ss_dssp             SSBSSTTSCBCSBCEEEEEEEECHHHHTSTTT-TTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEE
T ss_pred             cCCCCCCCCCCceeeEEEEEecChHHhCcchh-cCCcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEE
Confidence            99988766667889999999999999987422 23568899999986566778999999999999865    89999999


Q ss_pred             EEecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        154 VSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       154 ~s~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +||+.+|+..+.|++||||+.|++||+++|+
T Consensus       330 vS~G~~C~~~~~p~vyt~V~~y~~WI~~~i~  360 (372)
T 1z8g_A          330 VSWGTGCALAQKPGVYTKVSDFREWIFQAIK  360 (372)
T ss_dssp             EEEBSSSSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             EEeCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            9999999987889999999999999999873

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=100.00  E-value=1.1e-37  Score=237.24  Aligned_cols=162  Identities=33%  Similarity=0.632  Sum_probs=140.1

Q ss_pred             CCceEEEcCCCCC----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      .++++++||+|+.    .+|||||||++|+.              ++++++||| ||..........+..++++|||.+.
T Consensus        69 ~v~~i~~hp~y~~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~~~~~~~~~~~~~~GwG~~~  133 (242)
T 3tvj_B           69 WSEAVFIHEGYTHDAGFDNDIALIKLNNKVV--------------INSNITPIC-LPRKEAESFMRTDDIGTASGWGLTQ  133 (242)
T ss_dssp             EEEEEEECTTCCTTSCSTTCCEEEEESSCCC--------------CBTTBCCCB-CCCTTGGGGSCTTCEEEEEESCCCT
T ss_pred             eEEEEEeCCCCCCCCCCcCcEEEEEECCccc--------------cCCCEecCC-cCCCcccccccCCCEEEEEEeCCCC
Confidence            3578999999975    57999999999998              999999999 8876654456789999999999887


Q ss_pred             CCCCCCcCceEEEEEeeCccccccccccc---CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE--eCCeEEEEEEEEec
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNY---GATINENILCAGVLSGGKDSCGGDSGGPLMYP--LDTKYYIIGVVSYG  157 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~---~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~--~~~~~~L~Gi~s~~  157 (184)
                      . +..+..|+++.+++++.++|...+...   ...++++|||++......+.|+||+||||++.  .+++|+|+||+||+
T Consensus       134 ~-~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~Gi~S~g  212 (242)
T 3tvj_B          134 R-GFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWG  212 (242)
T ss_dssp             T-SSCCSBCEEEEEEBCCHHHHHHHHHSTTSCTTCCCTTEEEESCTTCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEEE
T ss_pred             C-CCcCccceEEeeeEEcHHHHHHhhccCCcccccccCCeEEECCCCCCCccccCCCCCeEEEEeCCCCcEEEEEEEEeC
Confidence            5 446788999999999999999887631   13588999999866667899999999999997  56799999999999


Q ss_pred             -CCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        158 -KKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       158 -~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                       ..|+..+.|++||||+.|++||+++|+
T Consensus       213 ~~~C~~~~~p~vyt~V~~y~~WI~~~i~  240 (242)
T 3tvj_B          213 SMNCGEAGQYGVYTKVINYIPWIENIIS  240 (242)
T ss_dssp             ESSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence             789888889999999999999999874

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=100.00  E-value=4.7e-38  Score=241.56  Aligned_cols=163  Identities=30%  Similarity=0.519  Sum_probs=139.1

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCce-eccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFR-LDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~-~~~~~~~~~~~~Gwg~~~   82 (184)
                      .+.+|++||+|+.   .+|||||||++|+.              |+++++||| ||..... .....+..|+++|||.+.
T Consensus        72 ~v~~i~~hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~~~~~~~~~~~~~v~GwG~~~  136 (254)
T 2bz6_H           72 RVAQVIIPSTYVPGTTNHDIALLRLHQPVV--------------LTDHVVPLC-LPERTFSERTLAFVRFSLVSGWGQLL  136 (254)
T ss_dssp             EEEEEEEETTCCTTSCSSCCEEEEESSCCC--------------CBTTBCCCB-CCCHHHHHHTGGGCCEEEEEESCBSS
T ss_pred             EEEEEEECCCCCCCCCcCcEEEEEECCccc--------------cCCCccceE-CCCCccccccccCCCcEEEEeCcccC
Confidence            4678999999965   67999999999998              999999999 7754322 123467899999999987


Q ss_pred             CCCCCCcCceEEEEEeeCccccccccccc--CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNY--GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKC  160 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c  160 (184)
                      ..+..+..|+...+++++.++|.+.+...  ...+++.|||++......+.|+||+||||++..+++|+|+||+||+.+|
T Consensus       137 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~g~~~l~GI~S~g~~C  216 (254)
T 2bz6_H          137 DRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGC  216 (254)
T ss_dssp             TTSCBCSBCEEEEEEEECHHHHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEECSSS
T ss_pred             CCCCCChhheeeeeeeecHHHHhhhhhccccCCccCCCEEeecCCCCCCccccccCCCceEEeECCEEEEEEEEEECCCC
Confidence            76666788999999999999998876531  1367899999985556678999999999999999999999999999999


Q ss_pred             CCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        161 AEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       161 ~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +..+.|++||||+.|++||+++|+
T Consensus       217 ~~~~~p~vyt~V~~~~~WI~~~~~  240 (254)
T 2bz6_H          217 ATVGHFGVYTRVSQYIEWLQKLMR  240 (254)
T ss_dssp             SCTTCCEEEEEGGGGHHHHHHHHT
T ss_pred             CCCCCCeEEEEHHHHHHHHHHHHh
Confidence            987889999999999999999874

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=1e-37  Score=239.34  Aligned_cols=159  Identities=29%  Similarity=0.510  Sum_probs=136.8

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.+|++||+|+.   .+|||||||++|+.              ++++++||| ||....  ....+..|+++|||.+..
T Consensus        87 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~--~~~~~~~~~v~GwG~~~~  149 (251)
T 1pyt_D           87 GVDTIFVHEKWNSFLVRNDIALIKLAETVE--------------LGDTIQVAC-LPSEGS--LLPQDYPCFVTGWGRLYT  149 (251)
T ss_dssp             EEEEEEECTTCBTTTTBSCCEEEEESSCCC--------------CCSSCCCCB-CCCTTC--CCCTTCEEEECBCCCSSC
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEECCCcc--------------cCCCeeeeE-cCCCcc--cCCCCCEEEEEecccCCC
Confidence            3678999999965   67999999999998              999999999 775542  345688999999999876


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC--CCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCA  161 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~--~c~  161 (184)
                      .+..+..|+...+++++.++|...+. +...++++|||++. ....+.|+||+||||++..+++|+|+||+||+.  .|+
T Consensus       150 ~~~~~~~L~~~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~~~C~  227 (251)
T 1pyt_D          150 NGPIAAELQQGLQPVVDYATCSQRDW-WGTTVKETMVCAGG-DGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCN  227 (251)
T ss_dssp             CSCCCSBCBCCEEECBCHHHHTSTTT-TTTTCCTTEEEECC-SCSSCCCCSCTTCEEEEESSSSEEEEEEEEECCSSCTT
T ss_pred             CCCcccchheeEeEeeCHHHcchhhc-cCCCcCCCeEEecC-CCCCccCCCCCCCceEEEECCCEEEEEEEEECCCCCCC
Confidence            66566789999999999999987643 23467899999984 556789999999999999889999999999996  688


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..+.|++||||+.|++||+++|+
T Consensus       228 ~~~~p~vyt~V~~~~~WI~~~~~  250 (251)
T 1pyt_D          228 TFKKPTVFTRVSAYIDWINQKLQ  250 (251)
T ss_dssp             BTTBCEEEEEGGGGHHHHHHHTT
T ss_pred             CCCCCeEEEEHHHHHHHHHHHhc
Confidence            77789999999999999999885

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=100.00  E-value=2.8e-37  Score=236.37  Aligned_cols=160  Identities=32%  Similarity=0.557  Sum_probs=136.6

Q ss_pred             CCceEEEcCCCCC----CCCeEEEEecee----cccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEee
Q psy17330          7 PDSSLHVIPSISD----DSHYQILHLEQR----KKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCL   78 (184)
Q Consensus         7 ~~~~i~~Hp~y~~----~~DiAllkL~~~----~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gw   78 (184)
                      .+.++++||+|+.    ++|||||||+++    +.              |+++++||| ||...  .....+..|+++||
T Consensus        71 ~v~~i~~hp~y~~~~~~~~DiALl~L~~~~~~~~~--------------~~~~v~pic-Lp~~~--~~~~~~~~~~v~Gw  133 (248)
T 2r0l_A           71 GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT--------------RSQFVQPIC-LPEPG--STFPAGHKCQIAGW  133 (248)
T ss_dssp             CEEEEEECTTCCTTSTTTTCCEEEEECCSSSCSSC--------------CBTTBCCCB-CCCTT--CCCCTTCEEEEEES
T ss_pred             eeeEEEeCCccCcCCCCCCCEEEEEeCCccccccc--------------CCCcEEEEE-CCCCC--CCCCCCCEEEEEEc
Confidence            4688999999965    569999999999    55              889999999 77544  23467899999999


Q ss_pred             cccCCCCC-CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEec
Q psy17330         79 GSVPGGGP-LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG  157 (184)
Q Consensus        79 g~~~~~~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~  157 (184)
                      |.+...+. .+..|+...+++++.++|+.... +...++++|||++......+.|+||+||||++..+++|+|+||+||+
T Consensus       134 G~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g  212 (248)
T 2r0l_A          134 GHLDENVSGYSSSLREALVPLVADHKCSSPEV-YGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWG  212 (248)
T ss_dssp             CCSSSSCCSCCSBCEEEEEEBCCHHHHTSTTT-TGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEEC
T ss_pred             cccCCCCCCCCchheEEEEeeeCHHHhCCccc-cCCcCCCCEEeECCCCCCCcCCCCccCCeEEEEECCcEEEEEEEEeC
Confidence            98876543 46789999999999999987532 23457899999985556778999999999999999999999999999


Q ss_pred             CCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        158 KKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       158 ~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+|+..+.|++||||+.|++||+++|+
T Consensus       213 ~~C~~~~~p~vyt~V~~~~~WI~~~~~  239 (248)
T 2r0l_A          213 DGCGRLHKPGVYTRVANYVDWINDRIR  239 (248)
T ss_dssp             STTTCTTCCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCCCCCCcEEEEHHHHHHHHHHHhc
Confidence            999887889999999999999999874

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=100.00  E-value=1.9e-37  Score=238.73  Aligned_cols=161  Identities=27%  Similarity=0.560  Sum_probs=138.8

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.+|++||+|+.   .+|||||||++|+.              |+++++||| ||...  .....+..|+++|||.+..
T Consensus        72 ~v~~i~~hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~--~~~~~~~~~~v~GwG~~~~  134 (261)
T 3gyl_B           72 TLKDIIPHPSYLQEGSQGDIALLQLSRPIT--------------FSRYIRPIS-LPAAQ--ASFPNGLHCTVTGWGHVAP  134 (261)
T ss_dssp             CEEEEEECTTCCSTTCSCCCEEEEESSCCC--------------CBTTBCCCB-CCCTT--CCCCTTCEEEEEESSCSBT
T ss_pred             EEEEEEECCCcCCCCCCCcEEEEEECCCcc--------------CCCceeccC-CCCcc--cCCCCCCEEEEEecCCCCC
Confidence            5678999999965   56999999999998              999999999 77554  3345789999999998765


Q ss_pred             CCC--CCcCceEEEEEeeCcccccccccc-----cCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEe
Q psy17330         84 GGP--LSPKLRHVQISVVDNPKCRQIFSN-----YGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSY  156 (184)
Q Consensus        84 ~~~--~~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~  156 (184)
                      ...  ....|+.+.+++++.++|...+..     ....++++|||++......+.|.||+||||++..+++|+|+||+||
T Consensus       135 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~lvGI~S~  214 (261)
T 3gyl_B          135 SVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSW  214 (261)
T ss_dssp             TBCCCTTCBCEEEEEEEECHHHHHHHHTTTCCTTCCCCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEECC
T ss_pred             CCCccCCccceEEEEEEECHHHhhhhhcccccccccccccCCeEeeCCCCCCCccCCCCCCCeeEEEeCCEEEEEEEEec
Confidence            543  267899999999999999987752     1245789999998666778899999999999999999999999999


Q ss_pred             cCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        157 GKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       157 ~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +..|+..+.|++||||+.|++||+++|+
T Consensus       215 g~~c~~~~~p~vyt~v~~~~~WI~~~i~  242 (261)
T 3gyl_B          215 GDACGARNRPGVYTLASSYASWIQSKVT  242 (261)
T ss_dssp             CCCSSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEHHHhHHHHHHHHh
Confidence            9999987889999999999999999873

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=100.00  E-value=1.5e-37  Score=236.96  Aligned_cols=159  Identities=29%  Similarity=0.478  Sum_probs=136.6

Q ss_pred             CCceEEEcCCCCC-----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSISD-----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y~~-----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~   81 (184)
                      .+.+|++||+|+.     .+|||||||++|+.              ++++++|+| ||....  ....+..|+++|||.+
T Consensus        73 ~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~--------------~~~~v~pi~-lp~~~~--~~~~~~~~~v~GwG~~  135 (240)
T 1gvk_B           73 GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVT--------------LNSYVQLGV-LPRAGT--ILANNSPCYITGWGLT  135 (240)
T ss_dssp             EEEEEEECTTCCTTCGGGCCCCEEEEESSCCC--------------CBTTBCCCC-CCCTTC--CCCTTCCEEEEESCBS
T ss_pred             EEEEEEECCCCCCCCCCCCCcEEEEEECCccc--------------cCCCcccee-cCCCCC--CCCCCCEEEEEecCcC
Confidence            4678999999964     56999999999998              999999999 775542  3457889999999998


Q ss_pred             CCCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC--C
Q psy17330         82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--K  159 (184)
Q Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~--~  159 (184)
                      ...+..+..|+.+.+++++.++|.+.+. ++..++++|||++ .....+.|+||+||||++..+++|+|+||+||+.  +
T Consensus       136 ~~~~~~~~~L~~~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~-~~~~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~~~~  213 (240)
T 1gvk_B          136 RTNGQLAQTLQQAYLPTVDYAICSSSSY-WGSTVKNSMVCAG-GDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLG  213 (240)
T ss_dssp             STTCCBCSBCEEEECCEECHHHHTSTTT-TGGGCCTTEEEEC-CSSSCBCCTTCTTCEEEEEETTEEEEEEEEEECBTTB
T ss_pred             CCCCCcchhccEEEEEEEcHHHhccccc-cCccCCcceEeec-CCCCCcccCCCCcCceEEEECCcEEEEEEEEEeCCCC
Confidence            7666667889999999999999987632 2245789999998 4566789999999999999999999999999985  7


Q ss_pred             CCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        160 CAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       160 c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      |...+.|++||||+.|++||+++|+
T Consensus       214 C~~~~~p~vyt~V~~~~~WI~~~i~  238 (240)
T 1gvk_B          214 CNVTRKPTVFTRVSAYISWINNVIA  238 (240)
T ss_dssp             SSCTTCCEEEEEGGGSHHHHHHHHH
T ss_pred             CCCCCCCcEEEeHHHHHHHHHHHHh
Confidence            8877889999999999999999873

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=100.00  E-value=1.3e-37  Score=236.72  Aligned_cols=157  Identities=29%  Similarity=0.530  Sum_probs=134.9

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.+|++||+|+.   .+|||||||++|+.              ++++++||| ||.....   ..+..++++|||.+..
T Consensus        73 ~v~~i~~hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-Lp~~~~~---~~~~~~~~~GwG~~~~  134 (238)
T 1ym0_A           73 DVDSIFVNENYDPATLENDVSVIKTAVAIT--------------FDINVGPIC-APDPAND---YVYRKSQCSGWGTINS  134 (238)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CSSSCCCCB-CCCTTCC---CTTCEEEEEESCCSST
T ss_pred             EEEEEEECCCCCCCCCcccEEEEEeCCCcc--------------ccCcccccC-CCCCcCC---CCCCceEEEeecCCCC
Confidence            4678999999965   67999999999998              999999999 7755432   2788999999999876


Q ss_pred             CCCC-CcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCC--CCCCCCCCCCeeEEEe-CCeEEEEEEEEecCC
Q psy17330         84 GGPL-SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGG--KDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKK  159 (184)
Q Consensus        84 ~~~~-~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~--~~~c~~d~G~pl~~~~-~~~~~L~Gi~s~~~~  159 (184)
                      .+.. +..|+...+++++.++|+..+..  ..+++.|||++.....  .+.|+||+||||++.. +++|+|+||+||+.+
T Consensus       135 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~  212 (238)
T 1ym0_A          135 GGVCCPAVLRYVTLNITTNAFCDAVYTS--DTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIG  212 (238)
T ss_dssp             TCCSCCSBCEEEEEEECCHHHHHHHCTT--SCCCTTEEEEECSSCSSSCBCCTTTTTCEEEEECTTCCEEEEEEEEECSS
T ss_pred             CCCcCCccceEEEEEeeCHHHHhHhhcc--cccCCCeEEecCCCCCCcCccCCCccCCeeEEECCCCCEEEEEEEeECCC
Confidence            6544 77899999999999999987751  3578999999854443  7899999999999997 789999999999999


Q ss_pred             CCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        160 CAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       160 c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      |. .+.|++||||+.|.+||+++|+
T Consensus       213 C~-~~~p~vyt~v~~~~~WI~~~i~  236 (238)
T 1ym0_A          213 CA-SGYPGVYSRVGFHAGWITDTIT  236 (238)
T ss_dssp             SS-SSSCEEEEEHHHHHHHHHHHHH
T ss_pred             CC-CCCCcEEEEHHHhHHHHHHHhc
Confidence            98 6789999999999999999874

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=100.00  E-value=4.1e-37  Score=239.91  Aligned_cols=160  Identities=32%  Similarity=0.557  Sum_probs=136.6

Q ss_pred             CCceEEEcCCCCC----CCCeEEEEecee----cccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEee
Q psy17330          7 PDSSLHVIPSISD----DSHYQILHLEQR----KKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCL   78 (184)
Q Consensus         7 ~~~~i~~Hp~y~~----~~DiAllkL~~~----~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gw   78 (184)
                      .+.+|++||+|+.    ++|||||||+++    +.              |+++++||| ||...  .....+..|+++||
T Consensus       106 ~v~~i~~hp~y~~~~~~~~DIALl~L~~~~~~~v~--------------~~~~v~pic-Lp~~~--~~~~~g~~~~v~Gw  168 (283)
T 1yc0_A          106 GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT--------------RSQFVQPIC-LPEPG--STFPAGHKCQIAGW  168 (283)
T ss_dssp             CEEEEEECTTCCTTSTTTTCCEEEEECCBTTBSSC--------------CBTTBCCCB-CCCTT--CCCCTTCEEEEEES
T ss_pred             eeEEEEecCccccCCCCCCceEEEEeCCCcccccc--------------ccCceeeeE-CCCCc--CCCCCCCEEEEEEe
Confidence            4688999999965    569999999999    55              889999999 77544  23467899999999


Q ss_pred             cccCCCCC-CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEec
Q psy17330         79 GSVPGGGP-LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG  157 (184)
Q Consensus        79 g~~~~~~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~  157 (184)
                      |.+...+. .+..|++..+++++.++|+.... ++..++++|||++......+.|+||+||||++..+++|+|+||+||+
T Consensus       169 G~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~-~~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GIvS~g  247 (283)
T 1yc0_A          169 GHLDENVSGYSSSLREALVPLVADHKCSSPEV-YGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWG  247 (283)
T ss_dssp             SCSBTTBCSCCSBCEEEEEEBCCHHHHTSTTT-TGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEEC
T ss_pred             CccCCCCCccCchheEeEEEEECHHHhcCccc-cCCcCCCCEEeeCCCCCCCccCCCCCCCceEEEECCcEEEEEEEEEC
Confidence            98876543 46789999999999999987532 23467899999986556678999999999999999999999999999


Q ss_pred             CCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        158 KKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       158 ~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+|+..+.|++||||+.|++||+++|+
T Consensus       248 ~~C~~~~~p~vyt~V~~y~~WI~~~i~  274 (283)
T 1yc0_A          248 DGCGRLHKPGVYTRVANYVDWINDRIR  274 (283)
T ss_dssp             STTTCTTCCEEEEEGGGGHHHHHHHCC
T ss_pred             CCCCCCCCCeEEEEhhhHHHHHHHHhc
Confidence            999987889999999999999999874

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=100.00  E-value=2.3e-37  Score=235.82  Aligned_cols=159  Identities=30%  Similarity=0.514  Sum_probs=136.1

Q ss_pred             CCCceEEEcCCCCC---C--CCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecc
Q psy17330          6 GPDSSLHVIPSISD---D--SHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGS   80 (184)
Q Consensus         6 ~~~~~i~~Hp~y~~---~--~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~   80 (184)
                      -++.+|++||+|+.   .  +|||||||++|+.              ++++++||| ||....  ....+..|+++|||.
T Consensus        72 ~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~--~~~~~~~~~v~GwG~  134 (240)
T 1fon_A           72 INAGDLFVHPLWNSNCVACGNDIALVKLSRSAQ--------------LGDKVQLAN-LPPAGD--ILPNEAPCYISGWGR  134 (240)
T ss_dssp             ECTTSEEECTTCCTTCGGGCCCCEEEECSSCCC--------------CTTSCCCCB-CCCTTC--CCCTTCCCEEEECTT
T ss_pred             eeeeEEEECCCCcCCCccCCCCEEEEEecCccc--------------cCCcccccC-CCCccc--CCCCCCeEEEEEEeE
Confidence            36789999999976   4  8999999999998              999999999 775542  345788999999999


Q ss_pred             cCCCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEe-CCeEEEEEEEEecC-
Q psy17330         81 VPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGK-  158 (184)
Q Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-~~~~~L~Gi~s~~~-  158 (184)
                      +...+..+..|+++.+++++.++|.+.+. ++..+++.|||++. . ..+.|+||+||||++.. +++|+|+||+||+. 
T Consensus       135 ~~~~~~~~~~L~~~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~~-~-~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~  211 (240)
T 1fon_A          135 LYTGGPLPDKLQQALLPTVDYEHCSQWDW-WGITVKKTMVCAGG-D-TRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSA  211 (240)
T ss_dssp             CCCSSSCCSBCEEEECCEECHHHHTSTTT-TGGGCCTTEEEECC-S-SSCSTTSCTTCEEEEECSSSCEEEEEEEEECCT
T ss_pred             cCCCCCCChhheEEEEeeeCHHHhcccee-cCCccccceEeecC-C-CCcccCCCCCCeEEeEcCCCCEEEEEEEEEcCC
Confidence            87666667889999999999999988643 22457899999983 3 37899999999999986 88999999999986 


Q ss_pred             -CCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        159 -KCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       159 -~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                       +|...+.|++||||+.|++||+++|+
T Consensus       212 ~~C~~~~~p~vyt~V~~~~~WI~~~~~  238 (240)
T 1fon_A          212 FGCNTIKKPTVFTRVSAFIDWIDETIA  238 (240)
T ss_dssp             TCSSBTTBCEEEEEGGGSHHHHHHHHH
T ss_pred             CCCCCCCCCcEEEEhHHHHHHHHHHHh
Confidence             79877789999999999999999873

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=100.00  E-value=6.3e-37  Score=232.90  Aligned_cols=157  Identities=29%  Similarity=0.530  Sum_probs=135.0

Q ss_pred             CCceEEEcCCCCC-----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSISD-----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y~~-----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~   81 (184)
                      .+.+|++||+|+.     .+|||||||++|+.              +++.++||| ||....  ....+..|+++|||.+
T Consensus        73 ~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~--------------~~~~v~pic-L~~~~~--~~~~~~~~~v~GwG~~  135 (236)
T 1elt_A           73 TVNSVFIHSGWNSDDVAGGYDIALLRLNTQAS--------------LNSAVQLAA-LPPSNQ--ILPNNNPCYITGWGKT  135 (236)
T ss_dssp             CEEEEEECTTCCTTCGGGCCCCEEEEESSCCC--------------CSSSCCCCC-CCCTTC--CCCTTCCEEEEESCCS
T ss_pred             EEEEEEECCCCCCCCCCCCccEEEEECCCCCc--------------cCCcEEecc-CCCccc--cCCCCCEEEEEeCCCc
Confidence            5788999999964     56999999999998              999999999 775442  3457889999999998


Q ss_pred             CCCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC--C
Q psy17330         82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--K  159 (184)
Q Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~--~  159 (184)
                      ...+..+..|++..+++++.++|++.+. ++..+++.+||++.  ...+.|+||+||||++..+++|+|+||+||+.  +
T Consensus       136 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~~--~~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~~~~  212 (236)
T 1elt_A          136 STGGPLSDSLKQAWLPSVDHATCSSSGW-WGSTVKTTMVCAGG--GANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSG  212 (236)
T ss_dssp             STTCCCCSBCEEEECCEECHHHHTSTTT-TGGGSCTTEEEECC--SSCBCCTTCTTCEEEEEETTEEEEEEEEEECCSSC
T ss_pred             CCCCCcChhheEeEeeecCHHHhccccc-cCCcCCcceEEecC--CCCccCCCCCCCeeEEEECCEEEEEEEEEEeCCCC
Confidence            7666567889999999999999988633 22457899999982  34789999999999999999999999999985  7


Q ss_pred             CCCCCCCeEEEeCcchHHHHHhhh
Q psy17330        160 CAEVGFPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       160 c~~~~~p~vft~v~~~~~WI~~~i  183 (184)
                      |...+.|++||||+.|++||+++|
T Consensus       213 C~~~~~p~vyt~V~~~~~WI~~~i  236 (236)
T 1elt_A          213 CNASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             TTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred             CCCCCCCeEEEEHHHhHHHHHhhC
Confidence            987788999999999999999876

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=100.00  E-value=2.5e-37  Score=233.30  Aligned_cols=152  Identities=32%  Similarity=0.581  Sum_probs=133.1

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.+|++||+|+.   .+|||||||++|+.              ++++++||| ||...    ...+..|+++|||.+..
T Consensus        66 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-L~~~~----~~~~~~~~v~GwG~~~~  126 (222)
T 1hj8_A           66 SSSRVIRHPNYSSYNIDNDIMLIKLSKPAT--------------LNTYVQPVA-LPTSC----APAGTMCTVSGWGNTMS  126 (222)
T ss_dssp             EEEEEEECTTCBTTTTBSCCEEEEESSCCC--------------CSSSCCCCB-CCSSC----CCTTCEEEEEESSCCCC
T ss_pred             EEEEEEECCCCCCCCCCCcEEEEEECCccc--------------CCCceeccC-CCCCC----CCCCCEEEEEECCCCCC
Confidence            4678999999965   67999999999998              999999999 77543    45789999999999877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+..+..|++..+++++.++|++.+.   ..+++.|||++......+.|+||+||||++++    +|+||+||+.+|+..
T Consensus       127 ~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~C~~~  199 (222)
T 1hj8_A          127 STADSNKLQCLNIPILSYSDCNNSYP---GMITNAMFCAGYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEP  199 (222)
T ss_dssp             SSCCTTBCEEEEEEBCCHHHHHHHST---TCCCTTEEEESCTTSSCBCCTTCTTCEEEETT----EEEEEEEECSSSSCT
T ss_pred             CCCCCceeEEEEEEEcCHHHhhhhcc---CCCCCCeEEeccCCCCCccCCCCcccceEECC----EEEEEEeecCCCCCC
Confidence            66667889999999999999998775   46789999998556677899999999999964    799999999999987


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|++||||+.|++||+++|+
T Consensus       200 ~~p~vyt~v~~~~~WI~~~~~  220 (222)
T 1hj8_A          200 GNPGVYAKVCIFNDWLTSTMA  220 (222)
T ss_dssp             TCCEEEEEGGGGHHHHHHHHH
T ss_pred             CcCcEEEEhHHhHHHHHHHhh
Confidence            889999999999999999873

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=100.00  E-value=6.1e-37  Score=232.81  Aligned_cols=154  Identities=25%  Similarity=0.451  Sum_probs=134.9

Q ss_pred             CCceEEEcCCCCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCC
Q psy17330          7 PDSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGP   86 (184)
Q Consensus         7 ~~~~i~~Hp~y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~   86 (184)
                      ++.++++||.   .+|||||||++|+.              ++++++||| ||...  .....+..|+++|||.+...+ 
T Consensus        73 ~v~~i~~hp~---~~DiALl~L~~~v~--------------~~~~v~pic-Lp~~~--~~~~~~~~~~v~GwG~~~~~~-  131 (234)
T 2asu_B           73 PVAKMVCGPS---GSQLVLLKLERSVT--------------LNQRVALIC-LPPEW--YVVPPGTKCEIAGWGETKGTG-  131 (234)
T ss_dssp             EEEEEEECST---TCCEEEEEESSCCC--------------CSSSSCCCB-CCCTT--CCCCTTCEEEEEESSCCTTSS-
T ss_pred             EEEEEecCCC---CCCeEEEEeCCcCc--------------CCCcEeccC-CCCcc--ccCCCCCEEEEEeCCccCCCC-
Confidence            4678999997   57999999999998              999999999 77543  234678999999999987654 


Q ss_pred             CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCC
Q psy17330         87 LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFP  166 (184)
Q Consensus        87 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p  166 (184)
                      .+..|+...+++++.++|+..+.   ..+++.+||++......+.|+||+||||++..+++|+|+||+||+.+|+..+.|
T Consensus       132 ~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p  208 (234)
T 2asu_B          132 NDTVLNVALLNVISNQECNIKHR---GRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWP  208 (234)
T ss_dssp             CTTBCEEEEEEEECHHHHHHHTT---TCCCTTEEEECCCSSCCBCCTTCTTCEEEEEETTEEEEEEEECCCSSSSCTTCC
T ss_pred             CCccceEEEeeEEcHHHcccccC---CccCcceEeecCCCCCCeeccCCCCCceEEEECCeEEEEEEEEcCCCCCCCCCC
Confidence            46789999999999999998774   567899999986556778999999999999999999999999999999987889


Q ss_pred             eEEEeCcchHHHHHhhhC
Q psy17330        167 GVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       167 ~vft~v~~~~~WI~~~i~  184 (184)
                      ++||||+.|++||+++++
T Consensus       209 ~vyt~V~~~~~WI~~~~~  226 (234)
T 2asu_B          209 AVFTRVSVFVDWIHKVMR  226 (234)
T ss_dssp             EEEEEGGGSHHHHHHHC-
T ss_pred             eEEEEHHHHHHHHHHHhh
Confidence            999999999999999874

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=100.00  E-value=3.8e-37  Score=234.87  Aligned_cols=156  Identities=25%  Similarity=0.446  Sum_probs=133.6

Q ss_pred             CCceEEEcCCCC----CCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSIS----DDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~----~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      ++.+|++||+|+    ..+|||||||++|+.              ++++++||| ||....  ....+..|+++|||.+.
T Consensus        67 ~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~--~~~~~~~~~v~GwG~~~  129 (240)
T 2zgc_A           67 HIKAAIQHPRYKPVPALENDLALLQLDGKVK--------------PSRTIRPLA-LPSKRQ--VVAAGTRCSMAGWGLTH  129 (240)
T ss_dssp             EEEEEEECTTCBCTTSCBSCCEEEEESSCCC--------------CCSSCCCCC-CCCTTC--CCCTTCEEEEEECCBSS
T ss_pred             EEEEEEECCCCCCCCCCcccEEEEEeCCccc--------------CCCceeeeE-cCCCCC--CCCCCCEEEEEECCccc
Confidence            467899999995    357999999999998              999999999 775542  34678999999999987


Q ss_pred             CCCCCCcCceEEEEEeeCcccccc--cccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEec-CC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQ--IFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KK  159 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~--~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~-~~  159 (184)
                      ..+..+..|+.+.+++++.++|+.  .+.   ..++++|||++......+.|+||+||||+++.  .|+|+||+||+ ..
T Consensus       130 ~~~~~~~~L~~~~~~~~~~~~C~~~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~--~~~l~Gi~S~g~~~  204 (240)
T 2zgc_A          130 QGGRLSRVLRELDLQVLDTRMCNNSRFWN---GSLSPSMVCLAADSKDQAPCKGDSGGPLVCGK--GRVLAGVLSFSSRV  204 (240)
T ss_dssp             TTCCBCSBCEEEEEEECCHHHHTSTTTTT---TCCCTTEEEEECSSTTCBCCTTCTTCEEEETT--TTEEEEEECCCCSS
T ss_pred             CCCCcCceeeeeeeeecCHHHhCCccccC---CCCCCceEeeccCCCCCccCCCCccCeeEECC--CCEEEEEEEECCCC
Confidence            666667889999999999999987  443   45789999998555567899999999999964  38999999999 67


Q ss_pred             CCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        160 CAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       160 c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      |+..+.|++||||+.|++||+++++
T Consensus       205 C~~~~~p~vyt~V~~y~~WI~~~~~  229 (240)
T 2zgc_A          205 CTDIFKPPVATAVAPYVSWIRKVTG  229 (240)
T ss_dssp             TTCTTSCCEEEESGGGHHHHHHHHC
T ss_pred             CCCCCCCcEEEEHHHhHHHHHHHHh
Confidence            9877789999999999999999874

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=100.00  E-value=7.5e-37  Score=233.46  Aligned_cols=160  Identities=26%  Similarity=0.464  Sum_probs=137.3

Q ss_pred             CCceEEEcCCCCC-----CCCeEEEEecee----cccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEe
Q psy17330          7 PDSSLHVIPSISD-----DSHYQILHLEQR----KKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGC   77 (184)
Q Consensus         7 ~~~~i~~Hp~y~~-----~~DiAllkL~~~----~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~G   77 (184)
                      ++.+|++||+|+.     .+|||||||++|    +.              ++..++||| ||...  .....+..|+++|
T Consensus        77 ~v~~i~~hp~y~~~~~~~~~DIALl~L~~~~~~~~~--------------~~~~v~pi~-lp~~~--~~~~~~~~~~v~G  139 (247)
T 3mhw_U           77 EVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQ--------------PSRTIQTIS-LPSMY--NDPQFGTSCEITG  139 (247)
T ss_dssp             EEEEEEECTTCEEC-CCEESCCEEEEEECTTSCCCC--------------CBTTBCCCB-CCCTT--CCCCTTCEEEEEE
T ss_pred             EEEEEEECCCCCCCcCCCCCcEEEEEeCCccccccc--------------cCCcccccc-cCCCc--CCCCCCCEEEEEe
Confidence            4678999999954     469999999999    55              888999999 77543  3345789999999


Q ss_pred             ecccCCCCC-CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEe
Q psy17330         78 LGSVPGGGP-LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSY  156 (184)
Q Consensus        78 wg~~~~~~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~  156 (184)
                      ||.+...+. .+..|+...+++++.++|+..+. +...++++|||++......+.|+||+||||++..+++|+|+||+||
T Consensus       140 wG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~l~Gi~S~  218 (247)
T 3mhw_U          140 FGKENSTDYLYPEQLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSW  218 (247)
T ss_dssp             SCCSSTTCSSCCSBCEEEEEEEECHHHHTSTTT-TGGGCCTTEEEEECTTSCCBCCTTCTTCEEEEEETTEEEEEEEEEE
T ss_pred             cCCcCCCCcccchhheeeEEEEEChHHhcCccc-cCCcCCCCeEecCCCCCCCccCCCCCCCeEEEEECCCEEEEEEEEE
Confidence            998876543 57789999999999999987542 2356889999998666678899999999999999999999999999


Q ss_pred             cCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        157 GKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       157 ~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.+|+..+.|++||||+.|++||+++++
T Consensus       219 g~~c~~~~~p~vyt~V~~~~~WI~~~~~  246 (247)
T 3mhw_U          219 GRGCALKDKPGVYTRVSHFLPWIRSHTK  246 (247)
T ss_dssp             CSSSSBTTBCEEEEEGGGCHHHHHHHTT
T ss_pred             CCCCCCCCCCeEEEEHHHHHHHHHHHhc
Confidence            9999987889999999999999999875

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=8e-37  Score=230.65  Aligned_cols=152  Identities=32%  Similarity=0.601  Sum_probs=131.3

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||+|+.   .+|||||||++|+.              ++++++||| ||...    ...+..|+++|||.+..
T Consensus        66 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-L~~~~----~~~~~~~~v~GwG~~~~  126 (223)
T 3mfj_A           66 SASKSIVHPSYNSNTLNNDIMLIKLKSAAS--------------LNSRVASIS-LPTSC----ASAGTQCLISGWGNTKS  126 (223)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CBTTBCCCB-CCSSC----CCTTCEEEEEESSCCCS
T ss_pred             EeeEEEECCCCCCCCCCCCEEEEEeCCCcc--------------cCCcEeeeE-CCCCC----CCCCCEEEEEeeeccCC
Confidence            3578999999965   67999999999998              999999999 77543    35789999999998864


Q ss_pred             C-CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         84 G-GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        84 ~-~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      . ...+..|+.+.+++++.++|++.+.   ..++++|||++......+.|+||+||||+++.    +|+||+||+.+|..
T Consensus       127 ~~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~GI~S~g~~C~~  199 (223)
T 3mfj_A          127 SGTSYPDVLKCLKAPILSDSSCKSAYP---GQITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQ  199 (223)
T ss_dssp             SSCCCCSSCEEEEEEBCCHHHHHHHST---TTCCTTEEEESCTTSSCBCCTTCTTCEEEETT----EEEEEEEECSSSSB
T ss_pred             CCCcccchheEEEEEEeCHHHhhhhhc---CcCCCCEEEccCCCCCCCcCCCCcccceEECC----EEEEEEEECCCCCC
Confidence            3 3456789999999999999998775   46789999998556677899999999999954    79999999999987


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       200 ~~~p~vyt~V~~~~~WI~~~i~  221 (223)
T 3mfj_A          200 KNKPGVYTKVCNYVSWIKQTIA  221 (223)
T ss_dssp             TTBCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCeEEEEHHHhHHHHHHHHh
Confidence            7889999999999999999873

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=100.00  E-value=1.5e-36  Score=229.19  Aligned_cols=151  Identities=30%  Similarity=0.494  Sum_probs=131.5

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||+|+.   .+|||||||++|+.              ++++++||| ||...    ...+..|+++|||.+. 
T Consensus        67 ~v~~i~~Hp~y~~~~~~~DIAll~L~~~~~--------------~~~~v~pi~-l~~~~----~~~~~~~~v~GwG~~~-  126 (223)
T 1lo6_A           67 SVVRAVIHPDYDAASHDQDIMLLRLARPAK--------------LSELIQPLP-LERDC----SANTTSCHILGWGKTA-  126 (223)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CBTTBCCCC-BCCCT----TCCCCEEEEEESSCCT-
T ss_pred             EEEEEEECCCCCCCCCcCeEEEEEECCccc--------------CCCceeecc-cCCCC----CCCCCEEEEEEECCCC-
Confidence            4678999999965   67999999999998              999999999 77543    2578999999999986 


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEec-CCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~-~~c~~  162 (184)
                      .+..+..|++..+++++.++|++.+.   ..++++|||++......+.|+||+||||++++    +|+||+||+ ..|..
T Consensus       127 ~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~----~l~Gi~S~g~~~C~~  199 (223)
T 1lo6_A          127 DGDFPDTIQCAYIHLVSREECEHAYP---GQITQNMLCAGDEKYGKDSCQGDSGGPLVCGD----HLRGLVSWGNIPCGS  199 (223)
T ss_dssp             TSSCCSBCEEEEEEEECHHHHHHHST---TTCCTTEEEEECTTTCCBCCTTTTTCEEEETT----EEEEEEEECCSSCCC
T ss_pred             CCCcCceeeEEEEEEeCHHHhhhhhC---CCCCCCeEEeecCCCCCeeccccCCCcEEeCC----EEEEEEeeCCCCCCC
Confidence            44567889999999999999998775   46789999998655677899999999999964    799999999 68987


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       200 ~~~p~vyt~V~~~~~WI~~~i~  221 (223)
T 1lo6_A          200 KEKPGVYTNVCRYTNWIQKTIQ  221 (223)
T ss_dssp             SSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCcEEEEHHHHHHHHHHHhc
Confidence            7889999999999999999875

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=100.00  E-value=1.3e-36  Score=247.66  Aligned_cols=162  Identities=33%  Similarity=0.632  Sum_probs=137.1

Q ss_pred             CCceEEEcCCCCC----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      .+.+|++||+|+.    .+|||||||++|+.              |+++|+||| ||..........+..++++|||.+.
T Consensus       230 ~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~~~~~~~~~~~~v~GWG~~~  294 (403)
T 1zjk_A          230 WSEAVFIHEGYTHDAGFDNDIALIKLNNKVV--------------INSNITPIC-LPRKEAESFMRTDDIGTASGWGLTQ  294 (403)
T ss_dssp             EEEEEEECTTCCTTSCCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCGGGGGGSSTTCEEEEEESCTTS
T ss_pred             eEEEEEECCCCCCCCCCcccEEEEEeCCcCc--------------CCCceeccc-CCCcccccccCCCCeEEEEcCCcCC
Confidence            4678999999965    46999999999998              999999999 8865544445678999999999887


Q ss_pred             CCCCCCcCceEEEEEeeCccccccccccc---CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE--eCCeEEEEEEEEec
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNY---GATINENILCAGVLSGGKDSCGGDSGGPLMYP--LDTKYYIIGVVSYG  157 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~---~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~--~~~~~~L~Gi~s~~  157 (184)
                      .+ ..+..|+.+.+++++.++|+..+...   ...++++||||+......+.|+||+||||++.  .+++|+|+||+||+
T Consensus       295 ~~-~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~~l~GIvS~g  373 (403)
T 1zjk_A          295 RG-FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWG  373 (403)
T ss_dssp             SS-CCCSBCEEEEEEEECHHHHHHHTTSSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEEEEEEEEEEE
T ss_pred             CC-ccCcccEEEEEeEeCHHHHhhhhhccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcEEEEEEEEEC
Confidence            65 45778999999999999999877521   12588999999865667899999999999998  46799999999999


Q ss_pred             -CCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        158 -KKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       158 -~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                       ..|...+.|++||||+.|++||+++|+
T Consensus       374 ~~~C~~~~~p~vyt~V~~y~~WI~~~i~  401 (403)
T 1zjk_A          374 SMNCGEAGQYGVYTKVINYIPWIENIIS  401 (403)
T ss_dssp             CSCC--CCCCEEEEEGGGGHHHHHHHHT
T ss_pred             CCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence             789877789999999999999999874

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=1.8e-36  Score=230.96  Aligned_cols=158  Identities=27%  Similarity=0.486  Sum_probs=133.5

Q ss_pred             CCCceEEEcCCCCC------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeec
Q psy17330          6 GPDSSLHVIPSISD------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLG   79 (184)
Q Consensus         6 ~~~~~i~~Hp~y~~------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg   79 (184)
                      -++.+|++||+|+.      .+|||||||++|+.              |+++++||| ||...  .....+..|+++|||
T Consensus        72 ~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~--~~~~~~~~~~v~GwG  134 (242)
T 2qy0_B           72 HPIRRVSVHPDYRQDESYNFEGDIALLELENSVT--------------LGPNLLPIC-LPDND--TFYDLGLMGYVSGFG  134 (242)
T ss_dssp             CCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCSG--GGGCTTCEEEEEECC
T ss_pred             eeEEEEEECCCCccCcCCCCCCcEEEEEECCCCc--------------CCCCcceee-cCCCc--cccCCCCeEEEEeec
Confidence            37899999999964      46999999999998              999999999 77543  234578899999999


Q ss_pred             ccCCCCCCCcCceEEEEEeeCccccccccccc--CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE--eCCeEEEEEEEE
Q psy17330         80 SVPGGGPLSPKLRHVQISVVDNPKCRQIFSNY--GATINENILCAGVLSGGKDSCGGDSGGPLMYP--LDTKYYIIGVVS  155 (184)
Q Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~--~~~~~~L~Gi~s  155 (184)
                      .+...  .+..|+.+.+++++.++|++.+...  ...++++|||++......+.|+||+||||++.  .+++|+|+||+|
T Consensus       135 ~~~~~--~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S  212 (242)
T 2qy0_B          135 VMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVS  212 (242)
T ss_dssp             CCSSS--CCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEE
T ss_pred             cCCCc--CCccceEEEEEEeCHHHHHHHhccccccccCCCCEEeccCCCCCCccccCCCCCcEEEEECCCCeEEEEEEEE
Confidence            87644  4678999999999999999876521  13578999999855567789999999999996  567999999999


Q ss_pred             ecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        156 YGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       156 ~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      |+.+|..  .|++||||+.|++||+++|+
T Consensus       213 ~g~~C~~--~~~vyt~V~~y~~WI~~~~~  239 (242)
T 2qy0_B          213 WGIGCSR--GYGFYTKVLNYVDWIKKEME  239 (242)
T ss_dssp             ECSSSSS--SCEEEEEGGGGHHHHHHHTT
T ss_pred             ECCCcCC--CCcEEEEHHHHHHHHHHHhh
Confidence            9999985  38999999999999999875

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=100.00  E-value=2e-36  Score=230.75  Aligned_cols=159  Identities=30%  Similarity=0.481  Sum_probs=134.2

Q ss_pred             CCceEEEcCCC--CC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSI--SD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y--~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~   81 (184)
                      ++.++++||+|  +.   .+|||||||++|+.              ++++++||| ||.....  ...+..|+++|||.+
T Consensus        73 ~v~~i~~hp~y~~~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~~--~~~~~~~~v~GwG~~  135 (241)
T 1m9u_A           73 NVDSYTMHENYGAGTASYSNDIAILHLATSIS--------------LGGNIQAAV-LPANNNN--DYAGTTCVISGWGRT  135 (241)
T ss_dssp             EEEEEEECTTTTCSSSTTTTCCEEEEESSCCC--------------CCSSCCCCC-CCSCSSC--CCTTCEEEEEESSCS
T ss_pred             EEEEEEeCCCcCCCCCcccccEEEEEecCccc--------------cCCCccccC-cCCCcCC--CCCCCEEEEEeCccc
Confidence            57789999999  43   56999999999998              999999999 7755221  237899999999998


Q ss_pred             CCCCCCCcCceEEEEEeeCccccccccccc-CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEe----
Q psy17330         82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNY-GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSY----  156 (184)
Q Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~----  156 (184)
                      ...+..+..|++..+++++.++|+..+... ...+++++||++......+.|+||+||||++.. ++|+|+||+||    
T Consensus       136 ~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~l~Gi~S~~~~~  214 (241)
T 1m9u_A          136 DGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPD-GGTRVVGVTSWVVSS  214 (241)
T ss_dssp             SSSSCCCSBCEEEEEEBCCHHHHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEES-SSEEEEEEEEECCBC
T ss_pred             CCCCCcccceeEeeEEEEcHHHhhhhhcccCCCcccCCcEEECcCCCCCeeecCcCCccEEEeC-CCEEEEEEEEEeccC
Confidence            776666788999999999999998865421 123789999998555677899999999999986 88999999999    


Q ss_pred             cCCCCCCCCCeEEEeCcchHHHHHhhh
Q psy17330        157 GKKCAEVGFPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       157 ~~~c~~~~~p~vft~v~~~~~WI~~~i  183 (184)
                      +.+|+..+.|++||||+.|++||+++|
T Consensus       215 g~~C~~~~~p~vyt~V~~~~~WI~~~~  241 (241)
T 1m9u_A          215 GLGACLPDYPSVYTRVSAYLGWIGDNS  241 (241)
T ss_dssp             TTSCBCTTSCEEEEEGGGTHHHHHHHC
T ss_pred             CCCccCCCCCEEEEEhHHhHhHHhhhC
Confidence            457987788999999999999999875

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=9.3e-37  Score=230.96  Aligned_cols=152  Identities=32%  Similarity=0.594  Sum_probs=132.6

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||+|+.   .+|||||||++|+.              |+++++||| ||...    ...+..|+++|||.+..
T Consensus        70 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~----~~~~~~~~v~GwG~~~~  130 (228)
T 1fxy_A           70 EVEVVIKHNRFTKETYDFDIAVLRLKTPIT--------------FRMNVAPAS-LPTAP----PATGTKCLISGWGNTAS  130 (228)
T ss_dssp             EEEEEEECTTCBTTTTBTCCEEEEESSCCC--------------CBTTBCCCC-CCSSC----CCTTCEEEEEESSCCCS
T ss_pred             EEEEEEECCCCCCCCCcCcEEEEEECCccc--------------CCCceeccC-CCCCC----CCCCCEEEEEecCccCC
Confidence            4678999999965   67999999999998              999999999 77543    35789999999999876


Q ss_pred             CCC-CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         84 GGP-LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        84 ~~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      .+. .+..|+...+++++.++|++.+.   ..++++|||++......+.|+||+||||+++.    +|+||+||+.+|+.
T Consensus       131 ~~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~C~~  203 (228)
T 1fxy_A          131 SGADYPDELQCLDAPVLSQAKCEASYP---GKITSNMFCVGFLEGGKDSCQGDSGGPVVCNG----QLQGVVSWGDGCAQ  203 (228)
T ss_dssp             SSCCCCSSCEEEEEEBCCHHHHHHHST---TTCCTTEEEESCTTCSCBCCTTCTTCEEEETT----EEEEEEEECSSSSB
T ss_pred             CCCCCCccceEEEEEEeCHHHhHhhcC---CCCCCCEEEeccCCCCCccccCccccceEECC----EEEEEEEECCCCCC
Confidence            554 57889999999999999998775   56789999998556677899999999999965    89999999999987


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       204 ~~~p~vyt~V~~y~~WI~~~~~  225 (228)
T 1fxy_A          204 KNKPGVYTKVYNYVKWIKNTIA  225 (228)
T ss_dssp             TTBCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCEEEEEhHHHHHHHHHHHh
Confidence            7889999999999999999873

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=100.00  E-value=1.2e-36  Score=217.02  Aligned_cols=140  Identities=31%  Similarity=0.600  Sum_probs=122.1

Q ss_pred             CCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCC---CCCcCceEEE
Q psy17330         19 DDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGG---PLSPKLRHVQ   95 (184)
Q Consensus        19 ~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~---~~~~~l~~~~   95 (184)
                      ..+|||||||++|+.              |+++|+||| ||....    ..+..|+++|||.+...+   ..+..|+++.
T Consensus         6 ~~nDIALl~L~~~v~--------------~~~~v~pic-Lp~~~~----~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~   66 (152)
T 2pka_B            6 YSHDLMLLRLQSPAK--------------ITDAVKVLE-LPTQEP----ELGSTCEASGWGSIEPGPDDFEFPDEIQCVQ   66 (152)
T ss_dssp             CTTCCEEEEESSCCC--------------CCSSCCCCC-CCSSCC----CTTCEEEEEESSCSSCCSSCCCCCSBCEEEE
T ss_pred             CCCCEEEEEECCCCc--------------CCCCEEeEE-CCCCCC----CCCCEEEEEecccccCCCCcCCCCccceEEE
Confidence            367999999999998              999999999 775442    468999999999987665   4578899999


Q ss_pred             EEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEec-CCCCCCCCCeEEEeCcc
Q psy17330         96 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTN  174 (184)
Q Consensus        96 ~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~-~~c~~~~~p~vft~v~~  174 (184)
                      +++++.++|++.+.   ..++++|||++......+.|+||+||||++++    +|+||+||+ ..|+..+.|++||||+.
T Consensus        67 ~~i~~~~~C~~~~~---~~~~~~~iCa~~~~~~~~~C~GDsGgPL~~~g----~l~Gi~S~g~~~C~~~~~p~vyt~V~~  139 (152)
T 2pka_B           67 LTLLQNTFCADAHP---DKVTESMLCAGYLPGGKDTCMGDSGGPLICNG----MWQGITSWGHTPCGSANKPSIYTKLIF  139 (152)
T ss_dssp             EEEECHHHHHHHCS---SBCCTTEEEEECTTSSCBCCTTCTTCEEEETT----EEEEEECCCCSSTTCTTCCEEEEEGGG
T ss_pred             eEEcCHHHhhhhhc---CCCCCCEEeeccCCCCCcccCCccccceEECC----EEEEEEecCCCCCCCCCCCeEEEEHHH
Confidence            99999999998775   46789999998555677899999999999974    699999999 78988788999999999


Q ss_pred             hHHHHHhhhC
Q psy17330        175 YIQWIADNIS  184 (184)
Q Consensus       175 ~~~WI~~~i~  184 (184)
                      |++||+++|+
T Consensus       140 y~~WI~~~~~  149 (152)
T 2pka_B          140 YLDWIDDTIT  149 (152)
T ss_dssp             GHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999999873

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=100.00  E-value=2.1e-36  Score=230.14  Aligned_cols=152  Identities=28%  Similarity=0.532  Sum_probs=132.1

Q ss_pred             CCceEEEcCCCCC--------------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCe
Q psy17330          7 PDSSLHVIPSISD--------------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGL   72 (184)
Q Consensus         7 ~~~~i~~Hp~y~~--------------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~   72 (184)
                      .+.++++||+|+.              .+|||||||++|+.              ++++++||| ||...    ...+..
T Consensus        67 ~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-L~~~~----~~~~~~  127 (237)
T 1ao5_A           67 LVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPAD--------------ITDVVKPIA-LPTKE----PKPGSK  127 (237)
T ss_dssp             CEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCC--------------CCSSSCCCC-CCCSC----CCTTCE
T ss_pred             EEEEEEcCCCcCcccccccccccccCCCCCEEEEEeCCccc--------------cCCceeCCC-cCCCC----CCCCCE
Confidence            5789999999964              68999999999998              999999999 77543    357899


Q ss_pred             eeeEeecccCCC-CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEE
Q psy17330         73 RGPGCLGSVPGG-GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYII  151 (184)
Q Consensus        73 ~~~~Gwg~~~~~-~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~  151 (184)
                      |+++|||.+... +..+..|+++.+++++.++|.+.+.   ..+++.|||++......+.|+||+||||++++    +|+
T Consensus       128 ~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~  200 (237)
T 1ao5_A          128 CLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYL---QKVTDVMLCAGEMGGGKDTCRDDSGGPLICDG----ILQ  200 (237)
T ss_dssp             EEEEESCCSSCC-CCCCSBCEEEEEEEECHHHHHHHCS---SCCCTTEEEEECTTCSCBCCTTCTTCEEEETT----EEE
T ss_pred             EEEEECCccCCCCCCCCCcccEEEEEecChhHhhhhhc---ccCCCCEEEEccCCCCCCCCCCCCcceEEECC----EEe
Confidence            999999988765 3467789999999999999998775   56889999998435667899999999999954    899


Q ss_pred             EEEEec-CCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        152 GVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       152 Gi~s~~-~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ||+||+ ..|+..+.|++||||+.|++||+++|+
T Consensus       201 Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~  234 (237)
T 1ao5_A          201 GTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM  234 (237)
T ss_dssp             EEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHH
T ss_pred             EEEeEcCCCCCCCCCCcEEEEHHHHHHHHHHHHh
Confidence            999999 689887889999999999999999873

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=100.00  E-value=1.1e-36  Score=233.86  Aligned_cols=159  Identities=27%  Similarity=0.495  Sum_probs=134.6

Q ss_pred             CceEEEcCCCCC----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCce-eccCCCCeeeeEeecccC
Q psy17330          8 DSSLHVIPSISD----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFR-LDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         8 ~~~i~~Hp~y~~----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~-~~~~~~~~~~~~Gwg~~~   82 (184)
                      +.+|++||+|+.    .+|||||||++|+.              ++++++||| ||..... .....+..|+++|||.+.
T Consensus        81 v~~i~~hp~y~~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~~~~~~~~g~~~~v~GwG~~~  145 (259)
T 3rm2_H           81 LEKIYIHPRYNWRENLDRDIALMKLKKPVA--------------FSDYIHPVC-LPDRETAASLLQAGYKGRVTGWGNLK  145 (259)
T ss_dssp             EEEEEECTTCBTTTTCBTCCEEEEESSCCC--------------CBTTBCCCB-CCCHHHHHHHCCTTCEEEEEESCCSS
T ss_pred             EEEEEECCCCCCCCCCCCcEEEEEeCCceE--------------cCCCccccc-CCCccccccccCCCCEEEEeecCCCc
Confidence            778999999962    56999999999998              999999999 7754432 234678999999999876


Q ss_pred             CCCC------CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecC---CCCCCCCCCCCCeeEEEe--CCeEEEE
Q psy17330         83 GGGP------LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS---GGKDSCGGDSGGPLMYPL--DTKYYII  151 (184)
Q Consensus        83 ~~~~------~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~---~~~~~c~~d~G~pl~~~~--~~~~~L~  151 (184)
                      ....      .+..|+.+.+++++.+.|...+.   ..++++|||++...   ...+.|+||+||||++..  +++|+|+
T Consensus       146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~  222 (259)
T 3rm2_H          146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR---IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQM  222 (259)
T ss_dssp             CC-------CCCSBCEEEEEEBCCHHHHHHTCS---SCCCTTEEEECCCGGGSCCCBCCTTCTTCEEEEECTTTCCEEEE
T ss_pred             CcCCccccccccccceEEEEEEeCHHHhhhhhc---ccCCCceEeeeccCCCCCCCcccCCCCCCeeEEEECCCCCEEEE
Confidence            5321      26789999999999999998875   67899999997432   335899999999999997  8999999


Q ss_pred             EEEEecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        152 GVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       152 Gi~s~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ||+||+.+|+..+.|++||||+.|++||+++|+
T Consensus       223 GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i~  255 (259)
T 3rm2_H          223 GIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID  255 (259)
T ss_dssp             EEEEECSSSSCTTCCEEEEETGGGHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHH
Confidence            999999999988889999999999999999874

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=100.00  E-value=2.5e-36  Score=240.46  Aligned_cols=156  Identities=29%  Similarity=0.558  Sum_probs=131.1

Q ss_pred             ceEEEcCCCCC----------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEee
Q psy17330          9 SSLHVIPSISD----------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCL   78 (184)
Q Consensus         9 ~~i~~Hp~y~~----------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gw   78 (184)
                      .+|++||+|+.          .+|||||||++|+.              |+++|+||| ||..........+..++++||
T Consensus       151 ~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~--------------~~~~v~Pic-Lp~~~~~~~~~~g~~~~v~GW  215 (333)
T 1elv_A          151 EHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVK--------------MGPTVSPIC-LPGTSSDYNLMDGDLGLISGW  215 (333)
T ss_dssp             EEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCSSGGGCCCTTCEEEEEES
T ss_pred             ceEEECCCCcccccccccCCCcceEEEEEeCCCCc--------------CCCccccee-cCCCcccccccCCcEEEEEEC
Confidence            89999999972          57999999999998              999999999 886665444567899999999


Q ss_pred             cccCCCCCCCcCceEEEEEeeCccccccccccc------CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEe--CC-eEE
Q psy17330         79 GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNY------GATINENILCAGVLSGGKDSCGGDSGGPLMYPL--DT-KYY  149 (184)
Q Consensus        79 g~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~------~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~--~~-~~~  149 (184)
                      |.+... ..+..|+++.+++++.++|.+.+...      ...++++||||+... ..+.|+||+||||++..  ++ +|+
T Consensus       216 G~t~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~~-~~~~C~GDSGGPL~~~~~~~~~~~~  293 (333)
T 1elv_A          216 GRTEKR-DRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKGDSGGAFAVQDPNDKTKFY  293 (333)
T ss_dssp             CCCSSC-SSCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTTCTTCEEEEECSSCTTCEE
T ss_pred             cCcCCC-CcCceeEEEEEEEEcHHHhhhhhhcccccccccccCCCCeECccCCC-CCCcCcCcCCCceEEEECCCCcEEE
Confidence            988764 35678999999999999999876421      135789999998534 77899999999999984  34 999


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        150 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       150 L~Gi~s~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      |+||+||+.+|+.   |++||||+.|++||+++|+
T Consensus       294 l~GIvS~g~~C~~---~~vyt~V~~y~~WI~~~~~  325 (333)
T 1elv_A          294 AAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQ  325 (333)
T ss_dssp             EEEEEEECSSTTS---EEEEEEGGGGHHHHHHHHH
T ss_pred             EEEEEeeCCCCCC---CcEEeEHHHHHHHHHHHHh
Confidence            9999999998974   8999999999999999873

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=100.00  E-value=5.8e-36  Score=228.16  Aligned_cols=156  Identities=27%  Similarity=0.381  Sum_probs=131.9

Q ss_pred             CCceEEEcCCCCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCC
Q psy17330          7 PDSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGP   86 (184)
Q Consensus         7 ~~~~i~~Hp~y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~   86 (184)
                      ++++++.||+   .+|||||||++|+.              ++++++||| ||...  .....+..|+++|||.+...+ 
T Consensus        72 ~v~~~~~~p~---~~DiALl~L~~~v~--------------~~~~v~pic-Lp~~~--~~~~~~~~~~v~GwG~~~~~~-  130 (240)
T 1si5_H           72 NVSQLVYGPE---GSDLVLMKLARPAV--------------LDDFVSTID-LPNYG--STIPEKTSCSVYGWGYTGLIN-  130 (240)
T ss_dssp             EEEEEEECSS---TTCEEEEEESSCCC--------------CSSSCCCCB-CCCTT--CCCCTTCEEEEEESSCCCCSS-
T ss_pred             EEEEEEcCCC---CCcEEEEEECCccc--------------cCCceeccC-cCCcC--CCCCCCCEEEEEEeCCCCCCC-
Confidence            4678889997   78999999999998              999999999 77543  234678999999999887654 


Q ss_pred             CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCC
Q psy17330         87 LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFP  166 (184)
Q Consensus        87 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p  166 (184)
                      .+..|+...+++++.++|.+.+.. ...+++.+||++......+.|+||+||||++..+++|+|+||+||+.+|+..+.|
T Consensus       131 ~~~~L~~~~~~~~~~~~C~~~~~~-~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p  209 (240)
T 1si5_H          131 YDGLLRVAHLYIMGNEKCSQHHRG-KVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRP  209 (240)
T ss_dssp             CCCBCEEEEEEEECGGGTCC--------CCTTEEEEECSSSCCBCCTTCTTCEEEEECSSSEEEEEEECSCSCSSCTTCC
T ss_pred             CCCeeEEEEEeecCHHHhhhhhcC-CccCCCCEEeecCCCCCCEeccCCCCCcEEEEECCcEEEEEEEEECCCCCCCCCC
Confidence            567899999999999999987751 1237899999986555778999999999999999999999999999999877889


Q ss_pred             eEEEeCcchHHHHHhhhC
Q psy17330        167 GVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       167 ~vft~v~~~~~WI~~~i~  184 (184)
                      ++||||+.|++||+++|+
T Consensus       210 ~vyt~V~~y~~WI~~~i~  227 (240)
T 1si5_H          210 GIFVRVAYYAKWIHKIIL  227 (240)
T ss_dssp             EEEEEGGGGHHHHHHHHS
T ss_pred             cEEEEHHHHHHHHHHHHh
Confidence            999999999999999874

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=100.00  E-value=1.8e-36  Score=245.91  Aligned_cols=159  Identities=26%  Similarity=0.508  Sum_probs=134.4

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+++|++||+|+.   .+|||||||++|+.              |+++|+||| ||....   ...+..|+++|||.+..
T Consensus       213 ~V~~ii~Hp~y~~~~~~nDIALL~L~~pv~--------------~~~~v~Pic-Lp~~~~---~~~~~~~~v~GWG~t~~  274 (394)
T 2b9l_A          213 KIRQVIIHSNFNPKTVVNDVALLLLDRPLV--------------QADNIGTIC-LPQQSQ---IFDSTECFASGWGKKEF  274 (394)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCB--------------CCTTCCCCB-CCCTTC---CCCCSCEEEEECCTTTT
T ss_pred             EEEEEEECCCCCCCccccceEEEEecCccc--------------cCCceeeeE-cCCccc---CccCCEEEEEeccCccC
Confidence            4778999999965   57999999999998              999999999 775542   24568899999998875


Q ss_pred             CC--CCCcCceEEEEEeeCccccccccccc----CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE---eCCeEEEEEEE
Q psy17330         84 GG--PLSPKLRHVQISVVDNPKCRQIFSNY----GATINENILCAGVLSGGKDSCGGDSGGPLMYP---LDTKYYIIGVV  154 (184)
Q Consensus        84 ~~--~~~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~---~~~~~~L~Gi~  154 (184)
                      +.  ..+..|+++.+++++.++|+..+...    ...++++||||+. ..+.+.|+||+||||++.   .+++|+|+||+
T Consensus       275 ~~~~~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~-~~g~d~C~GDSGGPLv~~~~~~~~~~~lvGIv  353 (394)
T 2b9l_A          275 GSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGG-EQGKDTCTGDGGSPLFCPDPRNPSRYMQMGIV  353 (394)
T ss_dssp             TCTTSSCCBCEEEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECC-BSSCSCCSSCTTCEEEEEETTEEEEEEEEEEE
T ss_pred             CCCCcccccceEEEEEEECHHHHHHHHhhcccccceecCCCEEEeeC-CCCCcCCCCCcchhhEEEEcCCCCeEEEEEEE
Confidence            42  34678999999999999999877531    1357899999984 456789999999999997   35789999999


Q ss_pred             EecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        155 SYGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       155 s~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      |||.+|+..+.|++||||+.|++||+++|+
T Consensus       354 S~G~~C~~~~~PgVYT~V~~y~~WI~~~i~  383 (394)
T 2b9l_A          354 AWGIGCGDENVPGVYANVAHFRNWIDQEMQ  383 (394)
T ss_dssp             SCTTCCCBSSSCEEEEEGGGGHHHHHHHHH
T ss_pred             EECCCCCCCCCCeEEEEHHHhHHHHHHHHH
Confidence            999999987889999999999999999873

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=4.1e-36  Score=228.27  Aligned_cols=152  Identities=28%  Similarity=0.506  Sum_probs=131.3

Q ss_pred             CCceEEEcCCCCC--------------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCe
Q psy17330          7 PDSSLHVIPSISD--------------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGL   72 (184)
Q Consensus         7 ~~~~i~~Hp~y~~--------------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~   72 (184)
                      .+.++++||+|+.              .+|||||||++|+.              ++++++||| ||...    ...+..
T Consensus        65 ~v~~i~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-L~~~~----~~~~~~  125 (235)
T 1ton_A           65 LVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPAD--------------ITGGVKVID-LPTKE----PKVGST  125 (235)
T ss_dssp             CEEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCC--------------CCSSCCCCC-CCCSC----CCTTCE
T ss_pred             EEEEEEeCCCCcccccccccccccCCCcCCEEEEEcCCccc--------------cCCcceeee-CCCCC----CCCCCE
Confidence            5788999999964              46999999999998              999999999 77543    357899


Q ss_pred             eeeEeecccCCC-CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEE
Q psy17330         73 RGPGCLGSVPGG-GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYII  151 (184)
Q Consensus        73 ~~~~Gwg~~~~~-~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~  151 (184)
                      |+++|||.+... +..+..|+++.+++++.++|.+.+.   ..+++.|||++......+.|+||+||||+++.    +|+
T Consensus       126 ~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~  198 (235)
T 1ton_A          126 CLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYK---DNVTDVMLCAGEMEGGKDTCAGDSGGPLICDG----VLQ  198 (235)
T ss_dssp             EEEEESSCSSSSSCCCCSBCEEEEEEEECGGGCGGGGS---TTGGGGEEEEECTTCSCBCCTTCTTCEEEETT----EEE
T ss_pred             EEEEecCCCCCCCCccCccceEEEEEEeCHHHHHHHhc---CcCCCCeEeeccCCCCCcCCCCCCccccEECC----EEE
Confidence            999999988654 3456789999999999999998875   46789999998555677899999999999954    899


Q ss_pred             EEEEec-CCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        152 GVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       152 Gi~s~~-~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ||+||+ ..|+..+.|++||||+.|++||+++|+
T Consensus       199 Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~  232 (235)
T 1ton_A          199 GITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK  232 (235)
T ss_dssp             EEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             EEEeeCCCCCCCCCCCeEEEEHHHHHHHHHHHHc
Confidence            999999 569877889999999999999999873

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=100.00  E-value=6.4e-36  Score=227.12  Aligned_cols=156  Identities=29%  Similarity=0.540  Sum_probs=131.6

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||+|+.   .+|||||||++|+.              ++++++||| ||...  .....+..|+++|||.+..
T Consensus        68 ~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-Lp~~~--~~~~~~~~~~v~GwG~~~~  130 (234)
T 1orf_A           68 LVKKEFPYPCYDPATREGDLKLLQLTEKAK--------------INKYVTILH-LPKKG--DDVKPGTMCQVAGWGRTHN  130 (234)
T ss_dssp             CEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CSSSSCCCC-CCSSC--CCCCTTCEEEEEESSCSSS
T ss_pred             EEEEEEcCCCCCCCCCCCCEEEEEECCcCc--------------cCCCeeeee-cCCCc--CCCCCCCEEEEEECCcCCC
Confidence            5788999999965   67999999999998              999999999 77544  2346789999999999876


Q ss_pred             CCCCCcCceEEEEEeeCcccccc--cccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC--C
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQ--IFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--K  159 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~--~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~--~  159 (184)
                      .+..+..|++..+++++.++|++  .+. ....+.++|||++......+.|+||+||||++++    +|+||+||+.  .
T Consensus       131 ~~~~~~~L~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~GI~S~g~~~~  205 (234)
T 1orf_A          131 SASWSDTLREVEITIIDRKVCNDRNHYN-FNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEG----VFRGVTSFGLENK  205 (234)
T ss_dssp             SSCCCSBCEEEEEEEECHHHHTSTTTTT-TTTCCCTTEEEEECSSCCCBCCTTCTTCEEEETT----EEEEEEEECCTTC
T ss_pred             CCCccccceEeEEEeeCHHHcCCccccc-cCCccCCCEEEecCCCCCCcCCCCCCCCeEEECC----EEEEEEEEcCCCC
Confidence            66567889999999999999984  332 2233455999998555678899999999999954    8999999997  7


Q ss_pred             CCCCCCCeEEEeCc-chHHHHHhhhC
Q psy17330        160 CAEVGFPGVYTRVT-NYIQWIADNIS  184 (184)
Q Consensus       160 c~~~~~p~vft~v~-~~~~WI~~~i~  184 (184)
                      |+..+.|++||||+ .|++||+++|+
T Consensus       206 C~~~~~p~vyt~v~~~~~~WI~~~~~  231 (234)
T 1orf_A          206 CGDPRGPGVYILLSKKHLNWIIMTIK  231 (234)
T ss_dssp             TTCTTSCEEEEECCHHHHHHHHHHHC
T ss_pred             CCCCCCCCEEEEchHHHHHHHHHHHH
Confidence            98878899999999 99999999875

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=4.2e-36  Score=227.21  Aligned_cols=152  Identities=29%  Similarity=0.474  Sum_probs=129.8

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||+|+.   .+|||||||++|+.              ++++++||| ||....  ....+..|+++|||.+..
T Consensus        70 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-Lp~~~~--~~~~~~~~~v~GwG~~~~  132 (227)
T 1euf_A           70 PVRRPIPHPDYNDETLANDIMLLKLTRKAD--------------ITDKVSPIN-LPRSLA--EVKPGMMCSVAGWGRLGV  132 (227)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CCSSCCCCC-CCCTTC--CCCTTCEEEEEESCBSST
T ss_pred             EEEEEEeCCCCCCCCCcCceEEEEECCcCc--------------CCCceeccC-CCCccc--cCCCCCEEEEEEEccCCC
Confidence            4678899999965   67999999999998              999999999 775442  346789999999999876


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+..+..|+++.+++++.++|...+.   ..++++|||++........|+||+||||++++    +|+||+||+  |...
T Consensus       133 ~~~~~~~L~~~~~~i~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~~~GDsGgPL~~~~----~l~Gi~S~g--c~~~  203 (227)
T 1euf_A          133 NMPSTDKLQEVDLEVQSEEKCIARFK---NYIPFTQICAGDPSKRKNSFSGDSGGPLVCNG----VAQGIVSYG--RNDG  203 (227)
T ss_dssp             TCCBCSBCEEEEEEBCCTHHHHTTCT---TCCTTTEEEESCTTSCCBCCTTCTTCEEEETT----EEEEEEEEC--CTTC
T ss_pred             CCCCchhheEeEeccccHHHhhHhhc---CcCCCcEEEccCCCCCCcccccCCCCceEECC----EEEEEEEEe--CCCC
Confidence            65567889999999999999998775   45788999998544435678999999999965    899999998  7766


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|++||||+.|++||+++|+
T Consensus       204 ~~p~vyt~V~~y~~WI~~~~~  224 (227)
T 1euf_A          204 TTPDVYTRISSFLSWIHSTMR  224 (227)
T ss_dssp             CSCEEEEEGGGTHHHHHHHTC
T ss_pred             CCCeEEEEHHHhHHHHHHHHh
Confidence            789999999999999999875

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=100.00  E-value=2.4e-36  Score=228.06  Aligned_cols=151  Identities=28%  Similarity=0.535  Sum_probs=130.7

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||+|+.   .+|||||||++|+.              ++++++||| ||...    ...+..|+++|||.+..
T Consensus        68 ~v~~~~~Hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pi~-l~~~~----~~~~~~~~v~GwG~~~~  128 (223)
T 2bdg_A           68 EASLSVRHPEYNRPLLANDLMLIKLDESVS--------------ESDTIRSIS-IASQC----PTAGNSCLVSGWGLLAN  128 (223)
T ss_dssp             EEEEEEECTTTTSSTTCSCCEEEEESSCCC--------------CCSSCCCCC-BCSSC----CCTTCEEEEEESCCCTT
T ss_pred             EEEEEEeCCCCCCCCCcCcEEEEEECCccc--------------CCCceeccc-CCCCC----CCCCCEEEEEeCcccCC
Confidence            4567899999965   67999999999998              999999999 66432    35788999999998876


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC-CCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~-~c~~  162 (184)
                      + ..+..|++..+++++.++|++.+.   ..++++|||++......+.|+||+||||+++.    +|+||+||+. .|+.
T Consensus       129 ~-~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~----~l~Gi~S~g~~~C~~  200 (223)
T 2bdg_A          129 G-RMPTVLQCVNVSVVSEEVCSKLYD---PLYHPSMFCAGGGQDQKDSCNGDSGGPLICNG----YLQGLVSFGKAPCGQ  200 (223)
T ss_dssp             S-CCCSBCEEEEEEBCCHHHHHHHST---TTCCTTEEEECCSTTCCBCCTTCTTCEEEETT----EEEEEEEECCSSTTC
T ss_pred             C-CCCCcceEEEEEEeCHHHhhhhhC---CCCCCCeEeccCCCCCCCcCCCCCCchheEcc----EEEEEEEecCCCCCC
Confidence            5 456789999999999999998775   46789999998555677899999999999975    8999999997 6988


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       201 ~~~p~vyt~V~~~~~WI~~~i~  222 (223)
T 2bdg_A          201 VGVPGVYTNLCKFTEWIEKTVQ  222 (223)
T ss_dssp             TTCCEEEECGGGTHHHHHHHHH
T ss_pred             CCCCcEEEEHHHhHHHHHHHhc
Confidence            7889999999999999999874

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=100.00  E-value=3.1e-36  Score=239.59  Aligned_cols=158  Identities=27%  Similarity=0.486  Sum_probs=133.6

Q ss_pred             CCCceEEEcCCCCC------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeec
Q psy17330          6 GPDSSLHVIPSISD------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLG   79 (184)
Q Consensus         6 ~~~~~i~~Hp~y~~------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg   79 (184)
                      -++.+|++||+|+.      .+|||||||++|+.              |+++++||| ||..+  .....+..++++|||
T Consensus       161 ~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~~~v~--------------~~~~v~Pic-Lp~~~--~~~~~g~~~~v~GWG  223 (329)
T 1md8_A          161 HPIRRVSVHPDYRQDESYNFEGDIALLELENSVT--------------LGPNLLPIC-LPDND--TFYDLGLMGYVSGFG  223 (329)
T ss_dssp             CCEEEEEECSSCCSSCTTCCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCSG--GGGCTTCEEEEEECC
T ss_pred             eeeEEEEECCCcccccCCCCCccEEEEEECCccc--------------CCCceEccc-cCCCc--cccCCCCEEEEEeCC
Confidence            36889999999963      56999999999998              999999999 78543  233568899999999


Q ss_pred             ccCCCCCCCcCceEEEEEeeCccccccccccc--CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE--eCCeEEEEEEEE
Q psy17330         80 SVPGGGPLSPKLRHVQISVVDNPKCRQIFSNY--GATINENILCAGVLSGGKDSCGGDSGGPLMYP--LDTKYYIIGVVS  155 (184)
Q Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~--~~~~~~L~Gi~s  155 (184)
                      .+...  .+..|+.+.+++++.++|++.+...  ...++++||||+......+.|+||+||||++.  .+++|+|+||+|
T Consensus       224 ~t~~~--~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~~~~~~~~l~GIvS  301 (329)
T 1md8_A          224 VMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVS  301 (329)
T ss_dssp             BCSSS--BCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCSCBCCTTTTTCEEEEEETTTTEEEEEEEEE
T ss_pred             CCCCC--CCccceEEEEEEcCHHHHHHHhhcccccccCCCCeEeeecCCCCCcCCCCccccceEEEECCCCcEEEEEEEE
Confidence            87654  5678999999999999999876421  23578999999855567789999999999996  567999999999


Q ss_pred             ecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        156 YGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       156 ~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      |+.+|+.  .|++||||+.|++||+++|+
T Consensus       302 ~G~~C~~--~~gvyT~V~~y~~WI~~~i~  328 (329)
T 1md8_A          302 WGIGCSR--GYGFYTKVLNYVDWIKKEME  328 (329)
T ss_dssp             ECSSSSS--SCEEEEEGGGTHHHHHHHHH
T ss_pred             ECCCcCC--CCcEEEEHHHHHHHHHHHHh
Confidence            9999985  48999999999999999873

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=3.1e-36  Score=227.08  Aligned_cols=152  Identities=32%  Similarity=0.617  Sum_probs=133.7

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||+|+.   .+|||||||++++.              ++++++||| ||...    ...+..++++|||.+..
T Consensus        66 ~v~~~~~hp~y~~~~~~~DIAll~L~~~~~--------------~~~~v~pi~-l~~~~----~~~~~~~~v~GwG~~~~  126 (223)
T 4i8h_A           66 SASKSIVHPSYNSNTLNNDIMLIKLKSAAS--------------LNSRVASIS-LPTSC----ASAGTQCLISGWGNTKS  126 (223)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CBTTBCCCB-CCSSC----CCTTCEEEEEESSCCCS
T ss_pred             EEeEEEECcCCCCCCCcCCEEEEEECCcCc--------------CCCceeceE-CCCCC----CCCCCEEEEEecccccC
Confidence            4678999999965   56999999999998              999999999 77543    46789999999998876


Q ss_pred             CC-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         84 GG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        84 ~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      .+ ..+..|+...+++++.++|...+.   ..+++++||++......+.|+||+||||+++.    +|+||+||+.+|+.
T Consensus       127 ~~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g~~c~~  199 (223)
T 4i8h_A          127 SGTSYPDVLKCLKAPILSDSSCKSAYP---GQITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQ  199 (223)
T ss_dssp             SSCCCCSSCEEEEEEBCCHHHHHHHST---TTCCTTEEEESCTTSSCBCCTTCTTCEEEETT----EEEEEEEECSSSSC
T ss_pred             CCCCccccceEEEeeecCHHHHHHhhC---CCCCCCeEeccCCCCCCccCCCCCCCcEEECC----EEEEEEEcCCCCCC
Confidence            53 346789999999999999998876   57899999998667778899999999999976    89999999999998


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       200 ~~~p~vyt~v~~~~~WI~~~i~  221 (223)
T 4i8h_A          200 KNKPGVYTKVCNYVSWIKQTIA  221 (223)
T ss_dssp             TTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCeEEEEHHHHHHHHHHHHh
Confidence            8889999999999999999873

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=100.00  E-value=3.9e-36  Score=226.91  Aligned_cols=155  Identities=34%  Similarity=0.565  Sum_probs=132.9

Q ss_pred             CCceEEEcCCCCC-CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCC
Q psy17330          7 PDSSLHVIPSISD-DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGG   85 (184)
Q Consensus         7 ~~~~i~~Hp~y~~-~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~   85 (184)
                      ++.+|++||+|+. .+|||||||++|+.              ++++++||| ||....  ....+..|+++|||.+...+
T Consensus        68 ~v~~i~~hp~y~~~~~DiALl~L~~~~~--------------~~~~v~pic-L~~~~~--~~~~g~~~~v~GwG~~~~~~  130 (224)
T 1pq7_A           68 SLSSVRVHPSYSGNNNDLAILKLSTSIP--------------SGGNIGYAR-LAASGS--DPVAGSSATVAGWGATSEGG  130 (224)
T ss_dssp             CEEEEEECTTCBTTBTCCEEEEESSCCC--------------CBTTBCCCC-BCCTTC--CCCTTCEEEEEESCCSSTTC
T ss_pred             EEEEEEECCCCCCCCCCEEEEEeCCCCc--------------CCCccccee-cCCccc--CCCCCCEEEEEecCCcCCCC
Confidence            5788999999965 77999999999998              999999999 774332  34678999999999987665


Q ss_pred             -CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCC
Q psy17330         86 -PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVG  164 (184)
Q Consensus        86 -~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~  164 (184)
                       ..+..|++..+++++.++|++.+.  ...+++.|||++......+.|+||+||||++. ++  +|+||+||+.+|+..+
T Consensus       131 ~~~~~~l~~~~~~~~~~~~C~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~g--~l~Gi~S~g~~C~~~~  205 (224)
T 1pq7_A          131 SSTPVNLLKVTVPIVSRATCRAQYG--TSAITNQMFCAGVSSGGKDSCQGDSGGPIVDS-SN--TLIGAVSWGNGCARPN  205 (224)
T ss_dssp             SCCCSBCEEEEEEEECHHHHHHHHC--TTTSCTTEEEECCTTCCCBCCTTCTTCEEECT-TC--CEEEEEEECSSSSCTT
T ss_pred             CcccceeeEeEEEEEcHHHhhHhhc--CCCCCCCeEEeecCCCCCCCCcCCCCcceECc-CC--eEEEEEEeCCCCCCCC
Confidence             456789999999999999998775  13578999999865667889999999999996 23  8999999999999878


Q ss_pred             CCeEEEeCcchHHHHHhhh
Q psy17330        165 FPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       165 ~p~vft~v~~~~~WI~~~i  183 (184)
                      .|++||||+.|++||+++|
T Consensus       206 ~p~vyt~V~~~~~WI~~~i  224 (224)
T 1pq7_A          206 YSGVYASVGALRSFIDTYA  224 (224)
T ss_dssp             CCEEEEETTTSHHHHHHHC
T ss_pred             CCeEEEEHHHHHHHHHhhC
Confidence            8999999999999999875

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=100.00  E-value=4.1e-36  Score=226.90  Aligned_cols=152  Identities=26%  Similarity=0.501  Sum_probs=130.9

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||+|+.   .+|||||||++|+.              ++++++||| ||...    ...+..|+++|||.+..
T Consensus        65 ~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-L~~~~----~~~~~~~~v~GwG~~~~  125 (224)
T 2qxi_A           65 KASKSFRHPGYSTQTHVNDLMLVKLNSQAR--------------LSSMVKKVR-LPSRC----EPPGTTCTVSGWGTTTS  125 (224)
T ss_dssp             EECEEEECTTCCTTTCTTCCEEEECSSCCC--------------CBTTBCCCC-CCSSC----CCTTCEEEEEESSCSSS
T ss_pred             EEEEEEECCCCCCCCCcCcEEEEEeCCCCc--------------CCCceeeEE-CCCCC----CCCCCEEEEEeCCccCC
Confidence            4678999999965   57999999999998              999999999 77543    25789999999998854


Q ss_pred             C-CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEec-CCCC
Q psy17330         84 G-GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCA  161 (184)
Q Consensus        84 ~-~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~-~~c~  161 (184)
                      . ...+..|+++.+++++.++|++.+.   ..+++.|||++......+.|+||+||||+++.    +|+||+||+ ..|.
T Consensus       126 ~~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~  198 (224)
T 2qxi_A          126 PDVTFPSDLMCVDVKLISPQDCTKVYK---DLLENSMLCAGIPDSKKNACNGDSGGPLVCRG----TLQGLVSWGTFPCG  198 (224)
T ss_dssp             SSCCCCSBCEEEEEEEECHHHHHHHHG---GGCCTTEEEEECTTCCCBCCTTCTTCEEEETT----EEEEEEEECCSSSC
T ss_pred             CCCCCChhheEEEeeecCHHHhhHHhc---CcCCCCeEEecCCCCCCccCCCCccccEEECC----EEEEEEEeCCCCCC
Confidence            3 3456789999999999999998875   45789999998656677899999999999954    799999999 6898


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..+.|++||||+.|++||+++|+
T Consensus       199 ~~~~p~vyt~V~~~~~WI~~~~~  221 (224)
T 2qxi_A          199 QPNDPGVYTQVCKFTKWINDTMK  221 (224)
T ss_dssp             CTTCCEEEEEGGGSHHHHHHHHH
T ss_pred             CCCCCeEEEEHHHHHHHHHHHHh
Confidence            77889999999999999999873

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=100.00  E-value=2.3e-36  Score=229.87  Aligned_cols=152  Identities=31%  Similarity=0.501  Sum_probs=131.4

Q ss_pred             CCceEEEcCCCCC--------------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCe
Q psy17330          7 PDSSLHVIPSISD--------------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGL   72 (184)
Q Consensus         7 ~~~~i~~Hp~y~~--------------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~   72 (184)
                      ++.++++||+|+.              .+|||||||++|+.              ++++++||| ||...    ...+..
T Consensus        67 ~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~--------------~~~~v~pi~-Lp~~~----~~~~~~  127 (237)
T 2zch_P           67 QVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAE--------------LTDAVKVMD-LPTQE----PALGTT  127 (237)
T ss_dssp             EEEEEEECTTSCGGGGTSSSCCTTCBCTTCCEEEEESSCCC--------------CCSSCCCCC-CCSSC----CCTTCE
T ss_pred             EEEEEecCCCcchhhhcccccccCCCCCcceEEEEeCCCCc--------------cCCcEeeeE-CCCCC----CCCCCE
Confidence            4678999999964              57999999999998              999999999 77542    457899


Q ss_pred             eeeEeecccCCCCC-CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEE
Q psy17330         73 RGPGCLGSVPGGGP-LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYII  151 (184)
Q Consensus        73 ~~~~Gwg~~~~~~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~  151 (184)
                      |+++|||.+...+. .+..|+.+.+++++.++|.+.+.   ..+++.|||++......+.|+||+||||+++.    +|+
T Consensus       128 ~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~  200 (237)
T 2zch_P          128 CYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHP---QKVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG----VLQ  200 (237)
T ss_dssp             EEEEESCCSSSSSCCCCSBCEEEEEEEECHHHHHHHCS---SBCCTTEEEEECTTCSCBCCTTCTTCEEESSS----SEE
T ss_pred             EEEEeCCccCCCCCcCCcccEEeEEEEeCHHHhccccc---CCCCceEEeecCCCCCCcccCCCccCeEEECC----EEE
Confidence            99999999876543 36789999999999999998765   56789999998656677899999999999975    899


Q ss_pred             EEEEecC-CCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        152 GVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       152 Gi~s~~~-~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ||+||+. .|+..+.|++||||+.|++||+++|+
T Consensus       201 Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  234 (237)
T 2zch_P          201 GITSWGSEPCALPERPSLYTKVVHYRKWIKDTIV  234 (237)
T ss_dssp             EEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             EEEEeCcCCCCCCCCCcEEEEHHHHHHHHHHHHh
Confidence            9999998 69877889999999999999999873

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=100.00  E-value=4.8e-36  Score=229.56  Aligned_cols=156  Identities=31%  Similarity=0.540  Sum_probs=132.5

Q ss_pred             CCceEEEcCCCCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCC
Q psy17330          7 PDSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGP   86 (184)
Q Consensus         7 ~~~~i~~Hp~y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~   86 (184)
                      .+.++++||.   .+|||||||++|+.              ++++++||| ||..+  .....+..|+++|||.+... .
T Consensus        90 ~v~~~~~hp~---~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~--~~~~~~~~~~v~GwG~~~~~-~  148 (247)
T 1ddj_A           90 EVSRLFLEPT---RKDIALLKLSSPAV--------------ITDKVIPAC-LPSPN--YVVADRTECFITGWGETQGT-F  148 (247)
T ss_dssp             EEEEEEECTT---SCSCEEEEESSCCC--------------CCSSCCCCB-CCCTT--CCCCTTCEEEEEECCCCSSS-T
T ss_pred             EeeeEEcCCC---CCcEEEEEeCCcee--------------eCCCEEeee-cCCcc--cCCCCCCEEEEEEcccCCCC-C
Confidence            3567888886   57999999999998              999999999 77554  23457889999999987643 3


Q ss_pred             CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCC
Q psy17330         87 LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFP  166 (184)
Q Consensus        87 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p  166 (184)
                      .+..|+++.+++++.++|++... ....+++.|||++......+.|+||+||||++..+++|+|+||+||+.+|+..+.|
T Consensus       149 ~~~~L~~~~~~i~~~~~C~~~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~~~p  227 (247)
T 1ddj_A          149 GAGLLKEAQLPVIENKVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKP  227 (247)
T ss_dssp             TTTBCEEEEEEEECHHHHTSTTT-TTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEECGGGCCBBTTBC
T ss_pred             CCccceEEeeeecCHHHhcchhc-cCCCCcCCeEeecCCCCCCccccCcCcCcEEEEECCcEEEEEEEEECCCCCCCCCC
Confidence            46789999999999999987532 22467899999985556778999999999999988999999999999999887889


Q ss_pred             eEEEeCcchHHHHHhhhC
Q psy17330        167 GVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       167 ~vft~v~~~~~WI~~~i~  184 (184)
                      ++||||+.|++||+++|+
T Consensus       228 ~vyt~V~~y~~WI~~~~~  245 (247)
T 1ddj_A          228 GVYVRVSRFVTWIEGVMR  245 (247)
T ss_dssp             EEEEEGGGSHHHHHHHHH
T ss_pred             EEEEEhHHhHHHHHHHhh
Confidence            999999999999999873

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=100.00  E-value=3.5e-36  Score=227.63  Aligned_cols=153  Identities=26%  Similarity=0.387  Sum_probs=129.4

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.+|++||+|+.   .+|||||||++|+.              ++++++||| ||...  .....+..|+++|||.+..
T Consensus        70 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-Lp~~~--~~~~~g~~~~v~GwG~~~~  132 (227)
T 1iau_A           70 PVKRPIPHPAYNPKNFSNDIMLLQLERKAK--------------RTRAVQPLR-LPSNK--AQVKPGQTCSVAGWGQTAP  132 (227)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CBTTBCCCC-CCCTT--CCCCTTCEEEEEESSCSSS
T ss_pred             EEEEEECCCCCCCCCCCCCeEEEEECCccc--------------CCCceeccc-CCCCC--CCCCCCCEEEEEEcccCCC
Confidence            4678999999965   67999999999998              999999999 77554  2346789999999999876


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+..+..|+...+++++.++|++.+..  ....+.++|++......+.|+||+||||++++    +|+||+||+  |...
T Consensus       133 ~~~~~~~L~~~~~~i~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g--c~~~  204 (227)
T 1iau_A          133 LGKHSHTLQEVKMTVQEDRKCESDLRH--YYDSTIELCVGDPEIKKTSFKGDSGGPLVCNK----VAQGIVSYG--RNNG  204 (227)
T ss_dssp             SSCCCSBCEEEEEEBCCHHHHHHHTTT--TCCTTTEEEESCTTSCCBCCTTCTTSEEEETT----EEEEEEEEE--CTTS
T ss_pred             CCCcCceeeEeeeeeechHHhhhHhcc--ccCCCcEEEeECCCCCCeeeecCCCchheEee----EEEEEEeEe--cCCC
Confidence            666678899999999999999987651  22345599998655578899999999999964    899999998  7766


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..|++||||+.|++||+++|+
T Consensus       205 ~~p~vyt~v~~~~~WI~~~~~  225 (227)
T 1iau_A          205 MPPRACTKVSSFVHWIKKTMK  225 (227)
T ss_dssp             CSCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCeEEEEHHHHHHHHHHHHh
Confidence            679999999999999999873

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=5.8e-36  Score=226.16  Aligned_cols=151  Identities=25%  Similarity=0.486  Sum_probs=129.0

Q ss_pred             CCceEEEcCCC-CC-----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecc
Q psy17330          7 PDSSLHVIPSI-SD-----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGS   80 (184)
Q Consensus         7 ~~~~i~~Hp~y-~~-----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~   80 (184)
                      ++.++++||+| +.     .+|||||||++|+.              ++++++||| ||...    ...+..|+++|||.
T Consensus        67 ~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~~~--------------~~~~v~pi~-L~~~~----~~~~~~~~v~GwG~  127 (225)
T 1npm_A           67 QVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSAN--------------LGDKVKPVQ-LANLC----PKVGQKCIISGWGT  127 (225)
T ss_dssp             CEEEEEECTTCCSSCTTCCTTCCEEEEESSCCC--------------CSSSSCCCE-ECSSC----CCTTCEEEEEESSC
T ss_pred             EEEEEEECCCCCCCCccCccccEEEEeeCCccc--------------CCCceeceE-CCCCC----CCCCCEEEEEeCCc
Confidence            57789999999 43     46999999999998              999999999 66433    35789999999998


Q ss_pred             cCC-CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEec-C
Q psy17330         81 VPG-GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-K  158 (184)
Q Consensus        81 ~~~-~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~-~  158 (184)
                      +.. .+..+..|+++.+++++.++|++.+.   ..++++|||++... ..+.|+||+||||+++.    +|+||+||+ .
T Consensus       128 ~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~-~~~~C~GDSGgPL~~~~----~l~GI~S~g~~  199 (225)
T 1npm_A          128 VTSPQENFPNTLNCAEVKIYSQNKCERAYP---GKITEGMVCAGSSN-GADTCQGDSGGPLVCDG----MLQGITSWGSD  199 (225)
T ss_dssp             SSSSSCCCCSBCEEEEEEECCHHHHHHHST---TTCCTTEEEEECTT-CCBCCTTCTTCEEEETT----EEEEEEEECCS
T ss_pred             ccCCCCCCCccceEeEEeeecHHHhhHHhC---CCCCCCEEeecCCC-CCeecCCCCCchheECC----EEEEEEEeCCC
Confidence            743 34457789999999999999998875   46789999998433 67899999999999964    799999999 5


Q ss_pred             CCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        159 KCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       159 ~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .|+..+.|++||||+.|++||+++|+
T Consensus       200 ~C~~~~~p~vyt~V~~y~~WI~~~~~  225 (225)
T 1npm_A          200 PCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             SSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             CCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            79877889999999999999999885

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=100.00  E-value=9.1e-36  Score=227.02  Aligned_cols=155  Identities=26%  Similarity=0.451  Sum_probs=131.5

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||+|+.   .+|||||||++++.              ++++++||| ||...   ....+..|+++|||.+..
T Consensus        74 ~v~~i~~hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pi~-l~~~~---~~~~~~~~~v~GwG~~~~  135 (240)
T 1mza_A           74 EIKKFIPFSRVTSDPQSNDIMLVKLQTAAK--------------LNKHVKMLH-IRSKT---SLRSGTKCKVTGWGATDP  135 (240)
T ss_dssp             EEEEEEECCCSSCSSSSSCCEEEEESSCCC--------------CBTTBCCCC-BCSSC---CCCTTCEEEEEECCCSST
T ss_pred             EEEEEEeCCCccCCCCCceEEEEEeCCCcc--------------cCCceeeee-cCCcc---cCCCCCEEEEEeCCcCCC
Confidence            4678999999965   57999999999998              999999999 77532   346789999999999876


Q ss_pred             CCC-CCcCceEEEEEeeCccccc--ccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCC
Q psy17330         84 GGP-LSPKLRHVQISVVDNPKCR--QIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKC  160 (184)
Q Consensus        84 ~~~-~~~~l~~~~~~~~~~~~C~--~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c  160 (184)
                      .+. .+..|+++.+++++.++|+  ..+.. ...++++|||++......+.|+||+||||++++    +|+||+||+..|
T Consensus       136 ~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~-~~~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~~~----~l~Gi~S~g~~C  210 (240)
T 1mza_A          136 DSLRPSDTLREVTVTVLSRKLCNSQSYYNG-DPFITKDMVCAGDAKGQKDSCKGDAGGPLICKG----VFHAIVSGGHEC  210 (240)
T ss_dssp             TCSSCCSBCEEEEEEECCHHHHTSTTTTTT-TTCCCTTEEEEECTTSCCCCCTTCTTCEEEETT----EEEEEECSSCCS
T ss_pred             CCCCccccceEeEEEEeCHHHcCCcceeCC-CCcCCCCeEeecCCCCCCccCCCCCCCeeEECC----EEEEEEEECCCC
Confidence            654 5778999999999999998  44431 125789999998555677899999999999964    899999999999


Q ss_pred             CCCCCCeEEEeCcc-hHHHHHhhhC
Q psy17330        161 AEVGFPGVYTRVTN-YIQWIADNIS  184 (184)
Q Consensus       161 ~~~~~p~vft~v~~-~~~WI~~~i~  184 (184)
                      +..+.|++||||+. |++||+++|+
T Consensus       211 ~~~~~p~vyt~v~~~y~~WI~~~~~  235 (240)
T 1mza_A          211 GVATKPGIYTLLTKKYQTWIKSNLV  235 (240)
T ss_dssp             SCTTCCEEEEECCHHHHHHHHHHTC
T ss_pred             CCCCCCcEEEeChHHHHHHHHHhcc
Confidence            98788999999999 9999999874

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=100.00  E-value=7e-36  Score=226.00  Aligned_cols=151  Identities=27%  Similarity=0.507  Sum_probs=130.5

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||+|+.   .+|||||||++|+.              ++++++||| ||..    ....+..|+++|||.+..
T Consensus        69 ~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pi~-l~~~----~~~~~~~~~v~GwG~~~~  129 (227)
T 2psx_A           69 QGVKSIPHPGYSHPGHSNDLMLIKLNRRIR--------------PTKDVRPIN-VSSH----CPSAGTKCLVSGWGTTKS  129 (227)
T ss_dssp             EEEEEEECTTCCSSSCTTCCEEEEESSCCC--------------CCSSSCCCC-BCSS----CCCTTCEEEEEESSCSSS
T ss_pred             EEEEEEeCCCCCCCCCCCCEEEEEeCCCCC--------------CCCceeeeE-CCCC----CCCCCCEEEEEeCcccCC
Confidence            3578899999965   67999999999998              999999999 6632    346789999999998876


Q ss_pred             CC-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEec-CCCC
Q psy17330         84 GG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCA  161 (184)
Q Consensus        84 ~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~-~~c~  161 (184)
                      .+ ..+..|++..+++++.++|++.+.   ..+++.|||++. ....+.|+||+||||+++.    +|+||+||+ ..|+
T Consensus       130 ~~~~~~~~L~~~~~~i~~~~~C~~~~~---~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~  201 (227)
T 2psx_A          130 PQVHFPKVLQCLNISVLSQKRCEDAYP---RQIDDTMFCAGD-KAGRDSCQGDSGGPVVCNG----SLQGLVSWGDYPCA  201 (227)
T ss_dssp             SSCCCCSBCEEEEEEBCCHHHHHHHST---TTCCTTEEEECC-STTCBCCTTCTTCEEEETT----EEEEEEEECCSSTT
T ss_pred             CCCCCCchheEEEEEecCHhHhhhhcC---CCCCCCEEcccC-CCCCccCCCCCCcceeeCC----EEEEEEeecCCCCC
Confidence            54 456789999999999999998775   467899999983 5667899999999999975    899999999 6898


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..+.|++||||+.|++||+++|+
T Consensus       202 ~~~~p~vyt~V~~~~~WI~~~~~  224 (227)
T 2psx_A          202 RPNRPGVYTNLCKFTKWIQETIQ  224 (227)
T ss_dssp             CTTCCEEEEEGGGCHHHHHHHHH
T ss_pred             CCCCCcEEEEHHHhHHHHHHHHh
Confidence            87889999999999999999873

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=100.00  E-value=6.6e-36  Score=225.45  Aligned_cols=149  Identities=28%  Similarity=0.461  Sum_probs=128.7

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .++++++||+|+.   .+|||||||++|+.              |+++++||| ||....   ...+..|+++|||.+..
T Consensus        69 ~v~~~~~hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-L~~~~~---~~~~~~~~v~GwG~~~~  130 (222)
T 1eq9_A           69 DVEDAVVNKNYDDFLLRNDVALVHLTNPIK--------------FNDLVQPIK-LSTNDE---DLESNPCTLTGWGSTRL  130 (222)
T ss_dssp             EEEEEEECTTCBTTTTBCCCEEEEESSCCC--------------CBTTBCCCE-ECSCCT---TCTTSEEEEEECCCSST
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEECCccc--------------cCCceEccC-CCCCCc---CCCCCEEEEEcccccCC
Confidence            4678999999965   67999999999998              999999999 775442   25788999999999876


Q ss_pred             CCCCCcCceEEEEEeeCccccc-ccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCR-QIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~-~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      .+..+..|+++.+++++.++|. ..+     .+.+.++|+.. ....+.|+||+||||++++    +|+||+||+..|..
T Consensus       131 ~~~~~~~L~~~~~~~~~~~~C~~~~~-----~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~----~l~GI~S~g~~C~~  200 (222)
T 1eq9_A          131 GGNTPNALQEIELIVHPQKQCERDQW-----RVIDSHICTLT-KRGEGACHGDSGGPLVANG----AQIGIVSFGSPCAL  200 (222)
T ss_dssp             TCCCCSBCEEEEEEEECHHHHHHHSS-----SCCTTEEEECC-CTTCBCCTTCTTCEEEETT----EEEEEEEECSTTTS
T ss_pred             CCcccchheEeEEEEeCHHHhCcccC-----CCCccEEeecC-CCCCeeeeCCccceEEECC----EEEEEEEECCCcCC
Confidence            6666788999999999999998 433     27899999984 5567899999999999964    89999999999987


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                       +.|++||||+.|++||+++|+
T Consensus       201 -~~p~vyt~V~~~~~WI~~~~~  221 (222)
T 1eq9_A          201 -GEPDVYTRVSSFVSWINANLK  221 (222)
T ss_dssp             -SSCEEEEEGGGGHHHHHHTSC
T ss_pred             -CCCCEEEEHHHHHHHHHHHhh
Confidence             779999999999999999875

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=100.00  E-value=1.7e-36  Score=247.13  Aligned_cols=157  Identities=26%  Similarity=0.457  Sum_probs=133.7

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCc-eeccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEF-RLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~-~~~~~~~~~~~~~Gwg~~~   82 (184)
                      ++++|++||+|+.   .||||||||++|+.              |+++|+||| ||.... ......+..++++|||.+.
T Consensus       205 ~V~~ii~Hp~y~~~~~~nDIALL~L~~~v~--------------~~~~V~PIC-Lp~~~~~~~~~~~~~~~~v~GWG~t~  269 (408)
T 2xxl_A          205 GIEKHLIHEKYDARHIMHDIALLKLNRSVP--------------FQKHIKPIC-LPITDELKEKAEQISTYFVTGWGTTE  269 (408)
T ss_dssp             EEEEEEECTTCBTTTTBSCCEEEEESSCCC--------------CBTTBCCCB-CCCSHHHHHHTTTCSEEEEEECCCBT
T ss_pred             eEEEEEeCCCCCccccccceEEEEECCccc--------------cccCccccC-CCCcccccccccCCCEEEEEEeCcCC
Confidence            3678999999964   67999999999998              999999999 776543 1235678999999999987


Q ss_pred             CCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCee------EEEeCCeEEEEEEEEe
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPL------MYPLDTKYYIIGVVSY  156 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl------~~~~~~~~~L~Gi~s~  156 (184)
                      .++ .+..|+++.+++++.++|++.+.   ..+..++|||+. ....+.|+||+||||      ++..+++|+|+||+||
T Consensus       270 ~~~-~s~~L~~~~v~iv~~~~C~~~~~---~~~~~~~iCAg~-~~g~d~C~GDSGGPL~~~~~~~~~~~~~~~l~GIvS~  344 (408)
T 2xxl_A          270 NGS-SSDVLLQANVPLQPRSACSQAYR---RAVPLSQLCVGG-GDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQ  344 (408)
T ss_dssp             TBC-SCSBCEEEEEEEECHHHHHHHHT---SCCCTTEEEECC-SCSSSGGGSCTTCEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred             CCC-CCchheEeeeeecCHHHHHHHhc---ccCCCceEeecC-CCCCccCCCcccChhhcCccceEEECCEEEEEEEEEE
Confidence            665 57889999999999999998876   235679999984 446789999999999      4455679999999999


Q ss_pred             c-CCCCCCCCCeEEEeCcchHHHHHhhh
Q psy17330        157 G-KKCAEVGFPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       157 ~-~~c~~~~~p~vft~v~~~~~WI~~~i  183 (184)
                      | .+|+..+.|++||||+.|++||+++|
T Consensus       345 G~~~Cg~~~~PgVYTrVs~y~~WI~~~i  372 (408)
T 2xxl_A          345 GVVTCGQISLPGLYTNVGEYVQWITDTM  372 (408)
T ss_dssp             CCCCTTSCCCCEEEEEGGGGHHHHHHHH
T ss_pred             CCCCCCCCCCCeEEEEHHHHHHHHHHHH
Confidence            9 68998888999999999999999986

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=100.00  E-value=9.8e-36  Score=224.83  Aligned_cols=153  Identities=25%  Similarity=0.418  Sum_probs=133.0

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||+|+.   .+|||||||++|+.              ++++++||| ||...  .....+..|+++|||.+..
T Consensus        71 ~v~~~~~hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-Lp~~~--~~~~~~~~~~v~GwG~~~~  133 (227)
T 3fzz_A           71 PVAKAIPHPDYNPDDRSNDIMLLKLVRNAK--------------RTRAVRPLN-LPRRN--AHVKPGDECYVAGWGKVTP  133 (227)
T ss_dssp             EEEEEEECTTCBTTTTBTCCEEEEESSCCC--------------CBTTBCCCC-CCCTT--CCCCTTCEEEEEESSCSST
T ss_pred             EEEEEEECcCCCCCCCcCCEEEEEECCcCC--------------CCCcccccC-CCCcc--cCCCCCCEEEEEECCcccC
Confidence            4678999999965   56999999999998              999999999 77654  3446789999999999877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+..+..|+.+.+++++.++|.+.+.  .....++++|++......+.|+||+||||+++.    +|+||+||+..|+..
T Consensus       134 ~~~~~~~l~~~~~~~~~~~~C~~~~~--~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~----~l~Gi~S~g~~c~~~  207 (227)
T 3fzz_A          134 DGEFPKTLHEVKLTVQKDQVCESQFQ--SSYNRANEICVGDSKIKGASFEEDSGGPLVCKR----AAAGIVSYGQTDGSA  207 (227)
T ss_dssp             TSCCCSBCEEEEEEBCCHHHHHHHHT--TTCCTTTEEEECCCSSCBCCTTTTTTCEEEETT----EEEEEEEECCTTCSS
T ss_pred             CCCCCCeeeEEEeeeecHHHhhhhhc--cccCCCceEEEeCCCCCCcccccCCccceEEec----CCcEEEEECCCCCCC
Confidence            76678899999999999999998765  234588999998666778899999999999976    899999999988764


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                        |++||||+.|++||+++|+
T Consensus       208 --p~vyt~V~~~~~WI~~~i~  226 (227)
T 3fzz_A          208 --PQVFTRVLSFVSWIKKTMK  226 (227)
T ss_dssp             --SEEEEEGGGTHHHHHHHHT
T ss_pred             --CeEEEEhHHhHHHHHHHHh
Confidence              9999999999999999985

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=249.81  Aligned_cols=160  Identities=28%  Similarity=0.505  Sum_probs=134.2

Q ss_pred             CCceEEEcCCCCC----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCce-eccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSISD----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFR-LDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y~~----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~-~~~~~~~~~~~~Gwg~~   81 (184)
                      .+++|++||+|+.    .+|||||||++|+.              |+++|+||| ||..... .....+..|+++|||.+
T Consensus       245 ~V~~ii~Hp~y~~~~~~~nDIALLkL~~pv~--------------~s~~v~Pic-Lp~~~~~~~~~~~g~~~~v~GWG~t  309 (424)
T 3nxp_A          245 MLEKIYIHPRYNWRENLDRDIALMKLKKPVA--------------FSDYIHPVC-LPDRETAASLLQAGYKGRVTGWGNL  309 (424)
T ss_dssp             CEEEEEECTTCBTTTTSBTCCEEEEESSCCC--------------CCSSCCCCB-CCCHHHHHHHHHHCSEEEEEESSHH
T ss_pred             EEEEEEeCCCCCCCCCCcCCeEEEEecCccc--------------cCCcccccC-CCCcccccccccCCCeEEEEecCCC
Confidence            4778999999972    67999999999998              999999999 7754322 12457899999999976


Q ss_pred             CC------CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecC---CCCCCCCCCCCCeeEEEe--CCeEEE
Q psy17330         82 PG------GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS---GGKDSCGGDSGGPLMYPL--DTKYYI  150 (184)
Q Consensus        82 ~~------~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~---~~~~~c~~d~G~pl~~~~--~~~~~L  150 (184)
                      ..      +...+..|+.+.+++++.++|...+.   ..++++||||+...   ...+.|+||+||||++..  +++|+|
T Consensus       310 ~~~~~~~~~~~~~~~L~~~~v~ii~~~~C~~~~~---~~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~~~~~~~l  386 (424)
T 3nxp_A          310 KETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR---IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQ  386 (424)
T ss_dssp             HHHHHHC----CCSBCEEEEEEBCCHHHHHHTCS---SCCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECTTTCCEEE
T ss_pred             CccCccccCCCCCccceEEEeeEEcHHHhhhhcc---CcCCCCeEecccCCCCCCCCccCCCcCCCceEEEECCCCcEEE
Confidence            43      12236789999999999999998765   67899999998532   245899999999999985  789999


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       151 ~Gi~s~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +||+||+.+|+..+.|+|||||+.|++||+++|+
T Consensus       387 ~GIvS~G~~C~~~~~pgVyT~Vs~y~~WI~~~i~  420 (424)
T 3nxp_A          387 MGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID  420 (424)
T ss_dssp             EEEECCSSCTTTCCSCEEEEECTTCHHHHHHHHH
T ss_pred             EEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHH
Confidence            9999999999988899999999999999999874

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-36  Score=235.70  Aligned_cols=154  Identities=18%  Similarity=0.285  Sum_probs=126.9

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCce-eccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFR-LDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~-~~~~~~~~~~~~Gwg~~~   82 (184)
                      ++++|++||+|+.   ++|||||||++|+.              |+++++||| ||..+.. .....+..++++|||.  
T Consensus       119 ~v~~i~~Hp~y~~~~~~nDIALl~L~~pv~--------------~~~~v~pic-Lp~~~~~~~~~~~~~~~~v~GwG~--  181 (283)
T 3f1s_B          119 KITHVHVHMRYDADAGENDLSLLELEWPIQ--------------CPGAGLPVC-TPEKDFAEHLLIPRTRGLLSGWAR--  181 (283)
T ss_dssp             EEEEEEECTTCBTTTTBTCCEEEEESSCCC--------------TTTTCCCCB-CCCHHHHHHTTTTTSCEEEEECBC--
T ss_pred             EeEEEEECCCCCCCCCCCCEEEEEeCCccc--------------CCCCEEeEE-CCCCccccccccCCCEEEEEECCC--
Confidence            4678999999964   66999999999999              999999999 7855422 3456789999999998  


Q ss_pred             CCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      ..+..+..|+.+.+++++.++|++.+.   ..++++|||++. ...  .|.+|+||||++..+++|+|+||+||+. |+.
T Consensus       182 ~~~~~~~~L~~~~v~~~~~~~C~~~~~---~~~~~~~~Ca~~-~~~--~~~gDSGgPlv~~~~~~~~l~GIvS~g~-c~~  254 (283)
T 3f1s_B          182 NGTDLGNSLTTRPVTLVEGEECGQVLN---VTVTTRTYCERS-SVA--AMHWMDGSVVTREHRGSWFLTGVLGSQP-VGG  254 (283)
T ss_dssp             C-------CEEEEEEEECHHHHHHHHT---SCCCTTEEEEEC-SSC--GGGBCTTCEEEEECSSCEEEEEEECCCS-GGG
T ss_pred             CCCCCCceeeEEEEeEeCHHHHhhhhc---CCCCCCeEcccC-CCC--CCCCCCCCcEEEEECCEEEEEEEEEeCC-CCC
Confidence            334467889999999999999999876   578999999973 332  4567999999999999999999999974 777


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       255 ~~~p~vyt~V~~y~~WI~~~~~  276 (283)
T 3f1s_B          255 QAHMVLVTKVSRYSLWFKQIMN  276 (283)
T ss_dssp             CSSEEEEEEGGGGHHHHHHHHT
T ss_pred             CCcceEEEEhHHhHHHHHHHhh
Confidence            7789999999999999999885

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=100.00  E-value=3.9e-36  Score=228.64  Aligned_cols=152  Identities=25%  Similarity=0.358  Sum_probs=130.8

Q ss_pred             CCceEEEcCCCCC--------------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCe
Q psy17330          7 PDSSLHVIPSISD--------------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGL   72 (184)
Q Consensus         7 ~~~~i~~Hp~y~~--------------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~   72 (184)
                      .+.++++||+|+.              .+|||||||++|+.              ++++++||| ||..+    ...+..
T Consensus        67 ~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-Lp~~~----~~~~~~  127 (237)
T 1gvz_A           67 QVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPAR--------------ITDAVKILD-LPTQE----PKLGST  127 (237)
T ss_dssp             CEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCC--------------CBTTBCCCC-CCSSC----CCTTCE
T ss_pred             EeeeEecCCccCcccccccccccccccCCceEEEEeCCCcc--------------cCCcEeeeE-CCCCC----CCCCCE
Confidence            5678999999964              67999999999998              999999999 77543    357899


Q ss_pred             eeeEeecccC-CCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEE
Q psy17330         73 RGPGCLGSVP-GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYII  151 (184)
Q Consensus        73 ~~~~Gwg~~~-~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~  151 (184)
                      |+++|||.+. ..+..+..|+++.+++++.++|.+.+.   ..+++.+||++......+.|+||+||||++++    +|+
T Consensus       128 ~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~  200 (237)
T 1gvz_A          128 CYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYP---EKMTEFVLCATHRDDSGSICLGDSGGALICDG----VFQ  200 (237)
T ss_dssp             EEEEEEECSCTTTCSEEEEEEEEEEEEECGGGGCSSCG---GGCCTTEEEEECSSTTCEECGGGTTCEEEETT----EEE
T ss_pred             EEEECCCcccCCCCCCCCccEEEEEeEeChhHhhhhhh---hcCCCceEEEeeCCCCCccCCCCccCcEeeCC----EEE
Confidence            9999999874 334456789999999999999998875   46789999998555667899999999999954    799


Q ss_pred             EEEEecC-CCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        152 GVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       152 Gi~s~~~-~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ||+||+. .|...+.|++||||+.|++||+++|+
T Consensus       201 GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~  234 (237)
T 1gvz_A          201 GITSWGYSECADFNDNFVFTKVMPHKKWIKETIE  234 (237)
T ss_dssp             EEECCCSSSCEETTTSCCEEESGGGHHHHHHHHH
T ss_pred             EEEEeCCCCCCCCCCCcEEEEHHHHHHHHHHHHh
Confidence            9999997 79877789999999999999999873

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.7e-35  Score=224.06  Aligned_cols=153  Identities=29%  Similarity=0.521  Sum_probs=130.5

Q ss_pred             CCceEEEcCCCCC--------------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCe
Q psy17330          7 PDSSLHVIPSISD--------------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGL   72 (184)
Q Consensus         7 ~~~~i~~Hp~y~~--------------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~   72 (184)
                      .++++++||+|+.              .+|||||||++|+.             .+++.++||| ||...    ...+..
T Consensus        67 ~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~-------------~~~~~v~pi~-L~~~~----~~~~~~  128 (238)
T 1spj_A           67 HVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPAD-------------TITDAVKVVE-LPTEE----PEVGST  128 (238)
T ss_dssp             CEEEEEECTTSCGGGGCC--CTTTCCCTTCCEEEEESSCCC-------------CSSTTCCCCC-CCSSC----CCTTCE
T ss_pred             EEEEEEcCCCccccccccccccccccCCCCeEEEEECcccc-------------ccCCceeecc-CCCCC----CCCCCE
Confidence            4678999999972              56999999999985             2778999999 77443    346899


Q ss_pred             eeeEeecccCCCC-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEE
Q psy17330         73 RGPGCLGSVPGGG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYII  151 (184)
Q Consensus        73 ~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~  151 (184)
                      |+++|||.+...+ ..+..|+++.+++++.++|.+.+.   ..+++.|||++......+.|+||+||||+++.    +|+
T Consensus       129 ~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~  201 (238)
T 1spj_A          129 CLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHV---QKVTDFMLCVGHLEGGKDTCVGDSGGPLMCDG----VLQ  201 (238)
T ss_dssp             EEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHCS---SCCCTTEEEEECTTCSSBCCTTCTTCEEEETT----EEE
T ss_pred             EEEEecCCCCCCCCCCcCcccEEEEeecCHHHhhhhcc---CCCCCCeEEeeCCCCCCCCCCCCCCCcEEEcC----EEE
Confidence            9999999887554 456789999999999999998765   45789999998656678899999999999964    899


Q ss_pred             EEEEec-CCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        152 GVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       152 Gi~s~~-~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ||+||+ ..|+..+.|++||||+.|++||+++|+
T Consensus       202 Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~  235 (238)
T 1spj_A          202 GVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIA  235 (238)
T ss_dssp             EEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             EEEEeCCCCCCCCCCCeEEEEHHHhHHHHHHHhh
Confidence            999999 679887889999999999999999873

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=100.00  E-value=3e-35  Score=223.52  Aligned_cols=154  Identities=28%  Similarity=0.515  Sum_probs=132.8

Q ss_pred             CceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCC
Q psy17330          8 DSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGG   84 (184)
Q Consensus         8 ~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~   84 (184)
                      +.++++||+|+.   ++|||||||++|+.              ++.+++||| ||...    ...+..|+++|||.+...
T Consensus        71 ~~~~~~h~~~~~~~~~~DIALl~L~~~v~--------------~~~~v~pi~-l~~~~----~~~~~~~~v~GwG~~~~~  131 (238)
T 4e7n_A           71 KEKFFCLSSKNYTLWDKDIMLIRLDSPVK--------------NSKHIAPFS-LPSSP----PSVGSVCRIMGWGRISPT  131 (238)
T ss_dssp             EEEECSSTTCCCCSSSCCCEEEEESSCCC--------------CBTTBCCCC-CCSSC----CCTTCEEEEEESSCSSSS
T ss_pred             eeeEEcCCCCCCCCCCCcEEEEEeCCCcc--------------CCCceeeee-CCCCC----CCCCCEEEEEECCCCCCC
Confidence            455667999965   66999999999998              999999999 77543    345899999999988754


Q ss_pred             C-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC-CCC
Q psy17330         85 G-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAE  162 (184)
Q Consensus        85 ~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~-c~~  162 (184)
                      + ..+..|+...+++++.++|+..+......+++++||++......+.|+||+||||+++.    .|+||+||+.. |+.
T Consensus       132 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~  207 (238)
T 4e7n_A          132 EGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLICNG----QFQGIASWGDDPCAQ  207 (238)
T ss_dssp             SCCCCSSCEEEEEEEECGGGGTTTCGGGCCCSCCSEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEECCSSTTC
T ss_pred             CCCCCccceEeeccccCHHHHhhhcccccCCCCCCeEEeCCCCCCCccCCCCCCcceEECC----EEEEEEEEeCCCCCC
Confidence            3 56788999999999999999988755567889999998667788999999999999976    69999999987 888


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       208 ~~~p~vyt~V~~~~~WI~~~i~  229 (238)
T 4e7n_A          208 PHKPAAYTKVFDHLDWIENIIA  229 (238)
T ss_dssp             TTCCEEEEESGGGHHHHHHHHT
T ss_pred             CCCCeEEEEhHHHHHHHHHHHh
Confidence            7889999999999999999874

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=100.00  E-value=1.6e-35  Score=223.96  Aligned_cols=154  Identities=30%  Similarity=0.510  Sum_probs=131.4

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||+|+.   .+|||||||++|+.              ++++++||| ||..+  .....+..|+++|||.+..
T Consensus        71 ~v~~i~~hp~y~~~~~~~DIAll~L~~~~~--------------~~~~v~pi~-l~~~~--~~~~~g~~~~v~GwG~~~~  133 (228)
T 2xw9_A           71 DVLRAVPHPDSQPDTIDHDLLLLQLSEKAT--------------LGPAVRPLP-WQRVD--RDVAPGTLCDVAGWGIVNH  133 (228)
T ss_dssp             EEEEEEECTTCCTTCCTTCCEEEEESSCCC--------------CBTTBCCCC-BCCSC--CCCCTTC-CEEEESSCCST
T ss_pred             EEEEEEeCCCCCCCCCCCcEEEEEeCCCcc--------------cCCCeeecc-cCCcc--cCCCCCCEEEEEEecccCC
Confidence            4678999999965   67999999999998              999999999 77543  2346789999999999877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC-CCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~-~c~~  162 (184)
                      .+..+..|++..+++++.++|++.+.. ...+++.+||++  ....+.|+||+||||++++    +|+||+||+. .|..
T Consensus       134 ~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~~~~~~Ca~--~~~~~~C~GDsGgPL~~~~----~l~Gi~s~g~~~C~~  206 (228)
T 2xw9_A          134 AGRRPDSLQHVLLPVLDRATCNRRTHH-DGAITERLMCAE--SNRRDSCKGDAGGPLVCGG----VLEGVVTSGSRVCGN  206 (228)
T ss_dssp             TCCCCSBCEEEECCEECHHHHTSTTTT-TTCCCTTEEEEC--CSSCBCCTTCTTCEEEETT----EEEEEECCSCCCSSC
T ss_pred             CCCCCchheEEEEEEcChhHhcCcccc-CCcccCCEEecC--CCCCccCCCCCcccEEECC----EEEEEEeecCCcCCC
Confidence            666678899999999999999887652 235789999998  3667899999999999964    8999999998 7987


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       207 ~~~p~vyt~V~~~~~WI~~~i~  228 (228)
T 2xw9_A          207 RKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             TTSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCcEEEEHHHHHHHHHHHhC
Confidence            7889999999999999999885

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=8.5e-36  Score=227.24  Aligned_cols=152  Identities=26%  Similarity=0.469  Sum_probs=119.0

Q ss_pred             CCceEEEcCCCCC--------------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCe
Q psy17330          7 PDSSLHVIPSISD--------------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGL   72 (184)
Q Consensus         7 ~~~~i~~Hp~y~~--------------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~   72 (184)
                      .++++++||+|+.              .+|||||||++|+.              ++++++||| ||..+    ...+..
T Consensus        70 ~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-L~~~~----~~~~~~  130 (240)
T 1sgf_A           70 LVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPAD--------------ITDVVKPIT-LPTEE----PKLGST  130 (240)
T ss_dssp             EEEEEEECTTSCGGGC----CCTTCBCTTCCEEEEESSCCC--------------CCSSCCCCC-CCCSC----CCTTCE
T ss_pred             EEEEEEcCCCCcccccccccccccCCCCCceEEEEeCCcCc--------------CCCcccccC-CCCCC----CCCCCE
Confidence            3678999999963              47999999999998              999999999 77543    357899


Q ss_pred             eeeEeecccCCC-CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEE
Q psy17330         73 RGPGCLGSVPGG-GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYII  151 (184)
Q Consensus        73 ~~~~Gwg~~~~~-~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~  151 (184)
                      |+++|||.+... ...+..|+.+.+++++.++|.+.+.   ..+++.|||++......+.|+||+||||++++    +|+
T Consensus       131 ~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~  203 (240)
T 1sgf_A          131 CLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHE---MKVTDAMLCAGEMDGGSYTCEHDSGGPLICDG----ILQ  203 (240)
T ss_dssp             EEEC-------C---------CEEEEEECTHHHHTTCS---SBCCTTEEEEEECSSSEEECCCCTTCEEEETT----EEE
T ss_pred             EEEEecCCCCCCCCCCCccccEEeeeEeCHHHhhhhhC---CCcCCCeEeEccCCCCCCCCCCCCcCcEEEcc----EEE
Confidence            999999988654 3456789999999999999988765   56789999998655667899999999999954    899


Q ss_pred             EEEEec-CCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        152 GVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       152 Gi~s~~-~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ||+||+ ..|+..+.|++||||+.|++||+++|+
T Consensus       204 GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~  237 (240)
T 1sgf_A          204 GITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA  237 (240)
T ss_dssp             EEECCCCSSCCCSSCCEEEEESGGGHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCeEEEeHHHHHHHHHHHHh
Confidence            999999 569877889999999999999999873

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=100.00  E-value=4.4e-35  Score=227.22  Aligned_cols=164  Identities=26%  Similarity=0.463  Sum_probs=136.7

Q ss_pred             CCceEEEcCCCCC-----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSISD-----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y~~-----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~   81 (184)
                      .+.+|++||+|+.     ++|||||+|+.++.          ....++.+++||| ||...  .....+..++++|||.+
T Consensus       100 ~v~~i~~Hp~y~~~~~~~~~Diall~L~~~~~----------~~~~~~~~v~pic-L~~~~--~~~~~~~~~~~~g~G~~  166 (276)
T 2vnt_A          100 EVENLILHKDYSADTLAHHNDIALLKIRSKEG----------RCAQPSRTIQTIC-LPSMY--NDPQFGTSCEITGFGKE  166 (276)
T ss_dssp             EEEEEEECTTCEECSSCEESCCEEEEEECTTS----------CCCCCCSSCCCCB-CCCSS--CCCCTTCEEEEEESCCS
T ss_pred             EEEEEEEccccccccccccchhhhhhhhcccc----------ccccCcccccccc-ccccc--ccccccceEEEEEeecc
Confidence            4678999999953     46999999998764          1122788999999 77544  34567899999999987


Q ss_pred             CCCC-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCC
Q psy17330         82 PGGG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKC  160 (184)
Q Consensus        82 ~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c  160 (184)
                      ...+ .....++.+.+++++.++|.+.+.. .....+.++|+.......+.|+||+||||++..+++|+|+||+|||.+|
T Consensus       167 ~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~-~~~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~~~~~~lvGIvS~G~~C  245 (276)
T 2vnt_A          167 NSTDYLYPEQLKMTVVKLISHRECQQPHYY-GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGC  245 (276)
T ss_dssp             STTCSCCCSBCEEEEEEEECHHHHTSTTTT-GGGSCTTEEEEECTTSCCCCCTTCTTCEEEEEETTEEEEEEEEEECSSS
T ss_pred             ccCCCCcchhheeeeeeEecHHHhhhhhcc-CcccCccceeeccCCCCCCCCCCCCCCeEEEeeCCeEEEEEEEEECCCC
Confidence            6553 4567888999999999999887652 2455678888876677789999999999999999999999999999999


Q ss_pred             CCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        161 AEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       161 ~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +..+.|++||||+.|++||+++|+
T Consensus       246 ~~~~~P~vyt~V~~y~~WI~~~~~  269 (276)
T 2vnt_A          246 ALKDKPGVYTRVSHFLPWIRSHTK  269 (276)
T ss_dssp             SBTTBCEEEEEGGGGHHHHHHHHS
T ss_pred             CCCCCCEEEEEHHHHHHHHHHHhh
Confidence            988899999999999999999985

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=100.00  E-value=2.2e-35  Score=222.91  Aligned_cols=151  Identities=28%  Similarity=0.456  Sum_probs=127.0

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.+|++||+|+.   .+|||||||++|+.              ++++++||| ||....  ....+..|+++|||.+. 
T Consensus        70 ~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~--~~~~~~~~~v~GwG~~~-  131 (224)
T 1cgh_A           70 TARRAIRHPQYNQRTIQNDIMLLQLSRRVR--------------RNRNVNPVA-LPRAQE--GLRPGTLCTVAGWGRVS-  131 (224)
T ss_dssp             EEEEEEECTTCBTTTTBSCCEEEEESSCCC--------------CBTTBCCCB-CCCTTC--CCCTTCEEEEEESCCSS-
T ss_pred             EEEEEEcCCCCCCCCCcCCEEEEEECCCCc--------------CCCceEeeE-CCCCCC--CCCCCCEEEEEECCcCC-
Confidence            4678999999964   67999999999998              999999999 775543  34678999999999887 


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+..+..|+...+++++.++|...+.   ....+.+||++......+.|+||+||||++++    +|+||+||+. |.. 
T Consensus       132 ~~~~~~~l~~~~~~i~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~-~~~-  202 (224)
T 1cgh_A          132 MRRGTDTLREVQLRVQRDRQCLRIFG---SYDPRRQICVGDRRERKAAFKGDSGGPLLCNN----VAHGIVSYGK-SSG-  202 (224)
T ss_dssp             SSCCCSBCEEEEEEBCCHHHHHHHCT---TCCTTTEEEECCTTSCCBCCTTCTTCEEEETT----EEEEEEEECC-TTC-
T ss_pred             CCCCCCcceEEEEEeeCHHHHHHHhC---cCCCcceEeeccCCCCCeEeeCCCccceEEcc----EEEEEEEEEC-CCC-
Confidence            33457789999999999999998774   34556799998555577899999999999964    8999999997 432 


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..|++||||+.|++||+++|+
T Consensus       203 ~~p~vyt~V~~~~~WI~~~~~  223 (224)
T 1cgh_A          203 VPPEVFTRVSSFLPWIRTTMR  223 (224)
T ss_dssp             CSCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCeEEEEHHHhHHHHHHHhh
Confidence            569999999999999999874

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=100.00  E-value=5.8e-36  Score=255.41  Aligned_cols=159  Identities=28%  Similarity=0.497  Sum_probs=122.7

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.+|++||+|+.   .+|||||||++|+.              ++++|+||| ||....  ....+..++++|||.+..
T Consensus       462 ~V~~ii~Hp~y~~~~~~nDIALlkL~~pv~--------------~~~~v~Pic-Lp~~~~--~~~~~~~~~v~GWG~~~~  524 (625)
T 2f83_A          462 GVQEIIIHDQYKMAESGYDIALLKLETTVN--------------YTDSQRPIC-LPSKGD--RNVIYTDCWVTGWGYRKL  524 (625)
T ss_dssp             EEEEEEECTTCCBTTTBCCCEEEEESSCCC--------------CBTTBCCCB-CCCGGG--TTCCCCCEEECBCC----
T ss_pred             eEEEEEECCccCcCCccccEEEEEECCccc--------------CCCceeeeE-cCCccC--CccCCCEEEEEEecCCCC
Confidence            4678999999965   67999999999998              999999999 775432  335678999999998876


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+..+..|+++.+++++.++|++.+.  ...++++|||++......+.|+||+||||++..+++|+|+||+|||.+|+..
T Consensus       525 ~~~~s~~L~~~~v~i~~~~~C~~~~~--~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~lvGIvS~G~~C~~~  602 (625)
T 2f83_A          525 RDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQR  602 (625)
T ss_dssp             --CCCSBCBCCEECCCCHHHHHTTCT--TSCCCTTBCCC----------CCCTTCEEEEEETTEEEEEEEEEECCC----
T ss_pred             CCcCCcccEEEEEEEcCHHHHHHHhc--cCCCCCCeEEeecCCCCCcCCCCCcccceEEEECCeEEEEEEEEeCCCCCCC
Confidence            66567889999999999999998775  2357899999986566778999999999999999999999999999999887


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|++||||+.|++||+++|+
T Consensus       603 ~~P~vyT~V~~y~~WI~~~~~  623 (625)
T 2f83_A          603 ERPGVYTNVVEYVDWILEKTQ  623 (625)
T ss_dssp             CCCCEEEEGGGGHHHHHHTC-
T ss_pred             CCCeEEEEHHHHHHHHHHHHh
Confidence            889999999999999999874

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=100.00  E-value=2.5e-35  Score=239.75  Aligned_cols=158  Identities=27%  Similarity=0.482  Sum_probs=126.1

Q ss_pred             CCCceEEEcCCCCC------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeec
Q psy17330          6 GPDSSLHVIPSISD------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLG   79 (184)
Q Consensus         6 ~~~~~i~~Hp~y~~------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg   79 (184)
                      -++.+|++||+|+.      .+|||||||++|+.              |+++|+||| ||..+.  ....+..++++|||
T Consensus       229 ~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-Lp~~~~--~~~~~~~~~v~GwG  291 (399)
T 1gpz_A          229 HPIRRVSVHPDYRQDESYNFEGDIALLELENSVT--------------LGPNLLPIC-LPDNDT--FYDLGLMGYVSGFG  291 (399)
T ss_dssp             CCEEEEEECSSCCSSSSSCCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCSGG--GGCTTCEEEEEECC
T ss_pred             cceEEEEECCCCCcCCCCCCCCcEEEEEECCcCc--------------CCCceeeee-cCCCcc--ccCCCCEEEEEccC
Confidence            46889999999963      56999999999998              999999999 786542  23468899999999


Q ss_pred             ccCCCCCCCcCceEEEEEeeCccccccccccc--CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEe--CCeEEEEEEEE
Q psy17330         80 SVPGGGPLSPKLRHVQISVVDNPKCRQIFSNY--GATINENILCAGVLSGGKDSCGGDSGGPLMYPL--DTKYYIIGVVS  155 (184)
Q Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~--~~~~~L~Gi~s  155 (184)
                      .+...  .+..|+.+.+++++.++|++.+...  ...++++||||+......+.|+||+||||++..  +++|+|+||+|
T Consensus       292 ~~~~~--~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~~~~~~~l~GivS  369 (399)
T 1gpz_A          292 VMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVS  369 (399)
T ss_dssp             -------CCSBCEEEEEEEECHHHHHC-----------CCSEEEEECGGGGGGGGCSCSSCEEEEEETTTTEEEEEEEEC
T ss_pred             CCCCc--cCccceEEEEEEcCHHHhhhhhhcccccCcCCCCeEecccCCCCCccCCCCCchHeEEEECCCCeEEEEEEEE
Confidence            87642  4678999999999999999876421  134789999998555567899999999999974  67999999999


Q ss_pred             ecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        156 YGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       156 ~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      |+.+|+.  .|++||||+.|++||+++|+
T Consensus       370 ~g~~C~~--~~~vyt~V~~y~~WI~~~~~  396 (399)
T 1gpz_A          370 WGIGCSR--GYGFYTKVLNYVDWIKKEME  396 (399)
T ss_dssp             CCTTTTT--TEEEEEEGGGGHHHHHHHTC
T ss_pred             eCCCcCC--CCeEEEEhHHhHHHHHHHhc
Confidence            9999985  38999999999999999875

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=100.00  E-value=3.2e-35  Score=222.89  Aligned_cols=151  Identities=30%  Similarity=0.586  Sum_probs=130.6

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||+|+.   .+|||||||++|+.              ++++++||| ||....    ..+..++++|||.+..
T Consensus        67 ~v~~~~~hp~y~~~~~~~DIALl~L~~~v~--------------~~~~v~pic-L~~~~~----~~~~~~~v~GwG~~~~  127 (231)
T 2aiq_A           67 PKEKYFCLNTRNDTIWDKDIMLIRLNRPVR--------------NSAHIAPLS-LPSNPP----SVGSVCRIMGWGTITS  127 (231)
T ss_dssp             EEEEECCSSCCSSSTTTTCCEEEEESSCCC--------------CBTTBCCCC-CCSSCC----CTTCEEEEEESSCSSS
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEecCCCC--------------CCCcEEeeE-CCCCCC----CCCCEEEEEeCCccCC
Confidence            5678999999965   67999999999998              999999999 775442    4689999999998765


Q ss_pred             C-CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEec-CCCC
Q psy17330         84 G-GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCA  161 (184)
Q Consensus        84 ~-~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~-~~c~  161 (184)
                      . ...+..|+++.+++++.++|++.+.   . +.+.+||++......+.|+||+||||++++    +|+||+||+ ..|.
T Consensus       128 ~~~~~~~~l~~~~~~~~~~~~C~~~~~---~-~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~  199 (231)
T 2aiq_A          128 PNATLPDVPHCANINILDYAVCQAAYK---G-LAATTLCAGILEGGKDTCKGDSGGPLICNG----QFQGILSVGGNPCA  199 (231)
T ss_dssp             SSCCCCSSCEEEEEEEECHHHHHHHCT---T-CCSSEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEEECSSTT
T ss_pred             CCCccCchhhhccceecchhhhhhhhc---C-CCcCcEEeccCCCCCcccCCcCCCcEEECC----EEEEEEEEeCCCCC
Confidence            4 3347789999999999999998775   2 789999998656778899999999999964    899999999 6798


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..+.|++||||+.|++||+++++
T Consensus       200 ~~~~p~vyt~V~~~~~WI~~~~~  222 (231)
T 2aiq_A          200 QPRKPGIYTKVFDYTDWIQSIIS  222 (231)
T ss_dssp             CTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCCEEEEEHHHHHHHHHHHHc
Confidence            87889999999999999999863

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=4.2e-35  Score=220.93  Aligned_cols=151  Identities=26%  Similarity=0.377  Sum_probs=130.8

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||+|+.   .+|||||||++|+.              +++.++||| ||...  .....+..|+++|||.+..
T Consensus        71 ~v~~~~~hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pi~-l~~~~--~~~~~~~~~~v~GwG~~~~  133 (224)
T 3rp2_A           71 KVEKQIIHESYNSVPNLHDIMLLKLEKKVE--------------LTPAVNVVP-LPSPS--DFIHPGAMCWAAGWGKTGV  133 (224)
T ss_dssp             EEEEEEECTTCCSSSCCSCCEEEEESSCCC--------------CBTTBCCCC-CCCTT--CCCCTTCEEEEEESSEEET
T ss_pred             EEEEEEECCCccCCCCCccEEEEEcCCCcc--------------cCCccccee-cCCcc--cCCCCCCEEEEEeCCCCCC
Confidence            5788999999965   56999999999998              999999999 77554  3346789999999999876


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+..+..|+...+++++.++|.+. .   ....+.++|++......+.|+||+||||+++.    +|+||+||+..|+..
T Consensus       134 ~~~~~~~l~~~~~~~~~~~~C~~~-~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g~~c~~~  205 (224)
T 3rp2_A          134 RDPTSYTLREVELRIMDEKACVDY-R---YYEYKFQVCVGSPTTLRAAFMGDSGGPLLCAG----VAHGIVSYGHPDAKP  205 (224)
T ss_dssp             TEEECSBCEEEEEEEECGGGTTTT-T---CCCTTTEEEECCTTSCCBCCTTTTTCEEEETT----EEEEEEEECCTTCCS
T ss_pred             CCCCCceeeEeeeeecChHHhccc-c---ccCcCCEEEecCCCCCCeeccCCCCCeEEEcc----eeeEEEEECCCCCCC
Confidence            665677899999999999999873 2   34688999998666778899999999999965    899999999888764


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                        |++||||+.|++||+++|+
T Consensus       206 --p~vyt~v~~y~~WI~~~i~  224 (224)
T 3rp2_A          206 --PAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             --CEEEEEHHHHHHHHHHHHC
T ss_pred             --CcEEEEHHHhHHHHHHHhC
Confidence              9999999999999999985

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=100.00  E-value=5.5e-35  Score=220.70  Aligned_cols=151  Identities=25%  Similarity=0.371  Sum_probs=128.2

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||+|+.   .+|||||||++|+.              ++..++|+| ||...  .....+..|+++|||.+..
T Consensus        71 ~v~~~~~hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pi~-l~~~~--~~~~~~~~~~v~GwG~~~~  133 (226)
T 4ag1_A           71 EVIKQFRHPKYNTSTLHHDIMLLKLKEKAS--------------LTLAVGTLP-FPSQF--NFVPPGRMCRVAGWGRTGV  133 (226)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CCSSSCCCC-CC-------CCTTCEEEEEESSBSST
T ss_pred             EEEEEEeCCCCCCCCCcCcEEEEEECCCCc--------------cCCceeccc-cCCcc--cCCCCCCEEEEEECCCCCC
Confidence            4678999999965   56999999999998              999999999 77543  3446789999999999877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+..+..|++..+++++.++|....    ....+.+||++......+.|+||+||||++..    +|+||+||+..|...
T Consensus       134 ~~~~~~~L~~~~~~~~~~~~C~~~~----~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g~~c~~~  205 (226)
T 4ag1_A          134 LKPGSDTLQEVKLRLMDPQACSHFR----DFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAG----VAQGIVSYGRSDAKP  205 (226)
T ss_dssp             TSCBCSBCEEEEEEEECGGGGTTST----TCCTTTEEEESCTTSCCBCCTTCTTCEEEETT----EEEEEEEECBTTCCS
T ss_pred             CCCCCCEeEEEEEEEcChHHccccc----CcCccceEeeccCCCCCcCccCCCCCceEEcC----EEEEEEEECCCCCCC
Confidence            6666788999999999999998433    34588999998666778899999999999965    899999999988764


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                        |++||||+.|++||+++|+
T Consensus       206 --p~vyt~v~~~~~WI~~~i~  224 (226)
T 4ag1_A          206 --PAVFTRISHYRPWINQILQ  224 (226)
T ss_dssp             --CEEEEEHHHHHHHHHHHHH
T ss_pred             --CCEEEEhHHHHHHHHHHHh
Confidence              9999999999999999874

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=100.00  E-value=9e-35  Score=219.23  Aligned_cols=153  Identities=24%  Similarity=0.420  Sum_probs=129.0

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||+|+.   .+|||||||++|+.                  +.|+| +|...    ...+..++++|||.+..
T Consensus        66 ~v~~i~~hp~y~~~~~~~DIALl~L~~~v~------------------~~~i~-l~~~~----~~~~~~~~v~GwG~~~~  122 (224)
T 3beu_A           66 RSTKVLQAPGFTKETYGKDWALIKLAQPIN------------------QPTLK-IATTT----AYNQGTFTVAGWGANRE  122 (224)
T ss_dssp             EEEEEEECTTCCCGGGSCCCEEEEESSCCC------------------SCCCE-ECCSS----TTSSSEEEEEESSCSST
T ss_pred             EEEEEEeCCCcCCCcCCCCEEEEEeCCCCC------------------CCccc-ccccc----ccCCCEEEEEecCccCC
Confidence            4568999999965   67999999999986                  35788 55332    23456899999999877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEe-CCeEEEEEEEEecCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-~~~~~L~Gi~s~~~~c~~  162 (184)
                      .+..+..|++..+++++.++|+..+.  ...+++.|||++......+.|+||+||||++.. +++|+|+||+||+.+|+.
T Consensus       123 ~~~~~~~l~~~~~~~~~~~~C~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~l~Gi~S~g~~C~~  200 (224)
T 3beu_A          123 GGSQQRYLLKANVPFVSDAACRSSSS--FILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCAR  200 (224)
T ss_dssp             TCCCCSBCEEEEEEEECHHHHHHHCS--SCCCGGGEEEECCSSSSCBCCTTCTTCEEEEECTTSCEEEEEEEEEESSSSC
T ss_pred             CCcccceeeEeeCcccCHHHhhhhcC--CccCCCCeEEeccCCCCCcCCCCcCCCeeEEecCCCCEEEEEEeccCCCCCC
Confidence            66667889999999999999998764  135788999998655677899999999999985 789999999999999988


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++++
T Consensus       201 ~~~p~vyt~V~~~~~WI~~~~~  222 (224)
T 3beu_A          201 KGKYGVYTEVSTFASAIASAAR  222 (224)
T ss_dssp             TTCCEEEEEHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEHHHHHHHHHHHHh
Confidence            7889999999999999999875

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=100.00  E-value=1.4e-34  Score=219.35  Aligned_cols=152  Identities=31%  Similarity=0.510  Sum_probs=129.8

Q ss_pred             CceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCC
Q psy17330          8 DSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGG   84 (184)
Q Consensus         8 ~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~   84 (184)
                      +..+++||+|+.   ++|||||||++|+.              ++++++||| ||...    ...+..|+++|||.+...
T Consensus        69 ~~~~~~h~~~~~~~~~~DIALl~L~~~v~--------------~~~~v~pi~-l~~~~----~~~~~~~~v~GwG~~~~~  129 (234)
T 3s69_A           69 KEKFICPNKKNDEVLDKDIMLIKLDSRVS--------------NSEHIVPLS-LPSSP----PSVGSVCHIMGWGSITPI  129 (234)
T ss_dssp             EEEEECTTCCTTCTTSSCCEEEEESSCCC--------------CBTTBCCCC-CCSSC----CCTTCEEEEEESSCSSSS
T ss_pred             eEEEECCCccCCCCCcccEEEEeeCCcCC--------------CCCcceeee-cCCCC----CCCCCEEEEEECCCCCCC
Confidence            455667999965   56999999999998              999999999 77544    245899999999987665


Q ss_pred             C-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC-CCC
Q psy17330         85 G-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAE  162 (184)
Q Consensus        85 ~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~-c~~  162 (184)
                      . .....|+...+++++.++|+..+.  ...+.++++|++......+.|+||+||||+++.    .|+||+||+.. |+.
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~C~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~  203 (234)
T 3s69_A          130 KVTYPDVPYCAYINLLDDAVCQAGYP--ELLTEYRTLCAGILEGGKDTCGGDSGGPLICNG----QFQGIVSFGAHPCGQ  203 (234)
T ss_dssp             SCCCCSSCEEEEEEEECHHHHHHHCT--TCCTTSCEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEECCSSTTC
T ss_pred             CcCcccccceeEEeecCHHHHhhhcc--cccCCcceEeccCCCCCCccCCCCCccceEEcC----EEEEEEEEcccccCC
Confidence            3 457789999999999999998875  245788999998667788999999999999976    69999999976 888


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       204 ~~~p~vyt~V~~~~~WI~~~i~  225 (234)
T 3s69_A          204 GLKPGVYTKVFDYNHWIQSIIA  225 (234)
T ss_dssp             TTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCcEEeeHHHHHHHHHHHhc
Confidence            7789999999999999999873

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=100.00  E-value=2e-34  Score=218.37  Aligned_cols=155  Identities=24%  Similarity=0.291  Sum_probs=133.3

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCC-CCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPG-PAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~-~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      .+.+|++| +|+.   .+|||||+|++|+.              +++ .++||| ||...  .....+..|+++|||.+.
T Consensus        68 ~v~~i~~h-~y~~~~~~~DiAll~L~~~v~--------------~~~~~v~pi~-Lp~~~--~~~~~~~~~~v~GwG~~~  129 (235)
T 3h7t_A           68 MAKKIYIV-RYHPLTMQNNYAVIETEMPIK--------------LDDKTTKKIE-LPSLL--YDPEPDTSVLVSGWGSTN  129 (235)
T ss_dssp             EEEEEEEC-SCBTTTTBTCCEEEEESSCCC--------------CCSSSCCCCB-CCCTT--CCCCTTCEEEEEECCCSS
T ss_pred             eeeeEEee-ecCCCCCCCCeEEEEeccccc--------------cCCcccccee-cCccc--cCCCCCCeEEEEecCCCC
Confidence            46789999 9964   67999999999998              888 999999 77554  335788999999999987


Q ss_pred             CCC-CCCcCceEEEEEeeCcccccccccccC--CCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC
Q psy17330         83 GGG-PLSPKLRHVQISVVDNPKCRQIFSNYG--ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  159 (184)
Q Consensus        83 ~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~  159 (184)
                      ..+ ..+..|+.+.+++++.++|.+.+....  ..++++|||++......+.|+||+||||++++    .|+||+||+..
T Consensus       130 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g~~  205 (235)
T 3h7t_A          130 FKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQNG----TLVGVASYISS  205 (235)
T ss_dssp             TTCCCCCSBCEEEEEEEECHHHHHHHHHTTTCGGGCSTTEEEECBTTTTBBCCTTCTTCEEEETT----EEEEEECCCTT
T ss_pred             CCCCchhHHHhhCCCceeCHHHHHHHhhhcccCccccCCeEecCCCCCCCccccCCCCCceeeCC----eEEEEEEecCC
Confidence            665 567889999999999999999876321  24889999998656688999999999999954    59999999999


Q ss_pred             CCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        160 CAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       160 c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      |.. +.|++||||+.|++||+++|+
T Consensus       206 C~~-~~p~vyt~v~~~~~WI~~~i~  229 (235)
T 3h7t_A          206 MPS-EFPSVFLRVGYYVLDIKDIIS  229 (235)
T ss_dssp             CCT-TSCEEEEEGGGGHHHHHHHHT
T ss_pred             CCC-CCCceEEEHHHHHHHHHHHHh
Confidence            987 789999999999999999875

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=100.00  E-value=6.5e-35  Score=230.79  Aligned_cols=154  Identities=18%  Similarity=0.283  Sum_probs=131.6

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCce-eccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFR-LDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~-~~~~~~~~~~~~Gwg~~~   82 (184)
                      .+++|++||+|+.   .+|||||||++|+.              |+++++||| ||..+.. .....+..++++|||.  
T Consensus       160 ~v~~i~~Hp~y~~~~~~~DIALl~L~~pv~--------------~~~~v~pic-Lp~~~~~~~~~~~~~~~~v~GwG~--  222 (317)
T 3h5c_B          160 KITHVHVHMRYDADAGENDLSLLELEWPIQ--------------CPGAGLPVC-TPEKDFAEHLLIPRTRGLLSGWAR--  222 (317)
T ss_dssp             EEEEEEECTTCBTTTTBSCCEEEEESSCCC--------------TTTSCCCCB-CCCHHHHHHTTTTTSCEEEEBCCT--
T ss_pred             EeeEEEECCCCCCCCCCCCeEEEEeCCccc--------------CCCCcccee-CCCcccccccccCCCeEEEEecCC--
Confidence            4788999999964   56999999999998              999999999 7754421 3456789999999998  


Q ss_pred             CCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      ..+..+..|+++.+++++.++|++.+.   ..++++|||++. ..  +.|.+|+||||++..+++|+|+||+||+ .|+.
T Consensus       223 ~~~~~~~~L~~~~v~~~~~~~C~~~~~---~~~~~~~~Ca~~-~~--~~~~gDsGgPl~~~~~~~~~l~Gi~S~g-~~~~  295 (317)
T 3h5c_B          223 NGTDLGNSLTTRPVTLVEGEECGQVLN---VTVTTRTYCERS-SV--AAMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGG  295 (317)
T ss_dssp             TCCSSSCCCBCCEEEEECHHHHHHHHT---CCCCTTEEEEEC-SC--CCCCCCTTCEEEEEETTEEEEEEEECCC-CSSC
T ss_pred             CCCCCCccceEEEEEEECHHHHhhhhc---CcCCCceeECCC-CC--CCcCCCCCCCEEEecCCEEEEEEEEEEC-CCCC
Confidence            334467789999999999999999876   578999999973 22  3578899999999999999999999997 4777


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       296 ~~~p~vyt~V~~y~~WI~~~i~  317 (317)
T 3h5c_B          296 QAHMVLVTKVSRYSLWFKQIMN  317 (317)
T ss_dssp             CTTEEEEEEGGGCHHHHHHHHC
T ss_pred             CCcceEEEEhHHhHHHHHHHhC
Confidence            7789999999999999999985

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=100.00  E-value=1.8e-34  Score=218.87  Aligned_cols=150  Identities=26%  Similarity=0.469  Sum_probs=129.2

Q ss_pred             ceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCC
Q psy17330          9 SSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGG   85 (184)
Q Consensus         9 ~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~   85 (184)
                      .++++||.|+.   ++|||||||++|+.              ++++++||| ||...    ...+..|+++|||.+... 
T Consensus        72 ~~~~~h~~~~~~~~~~DIALl~L~~~v~--------------~~~~v~pi~-L~~~~----~~~~~~~~v~GwG~~~~~-  131 (234)
T 3s9c_A           72 GKYFCLNTKFPNGLDKDIMLIRLRRPVT--------------YSTHIAPVS-LPSRS----RGVGSRCRIMGWGKISTT-  131 (234)
T ss_dssp             EEECCSSCSSTTCGGGCCEEEEESSCCC--------------CBTTBCCCB-CCSSC----CCTTCEEEEEESSCSBTT-
T ss_pred             eEEEeCCCCCCCCCcCceEEEEECCccc--------------cCCcccccc-cCCCC----CCCCCeEEEEeeCCCCCC-
Confidence            45567999965   56999999999998              999999999 77544    234899999999988765 


Q ss_pred             CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC-CCCCC
Q psy17330         86 PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVG  164 (184)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~-c~~~~  164 (184)
                      .....|+...+++++.++|+..+.  ...+++++||++......+.|+||+||||+++.    .|+||+||+.. |+..+
T Consensus       132 ~~~~~l~~~~~~~~~~~~C~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~----~l~Gi~S~g~~~C~~~~  205 (234)
T 3s9c_A          132 TYPDVPHCTNIFIVKHKWCEPLYP--WVPADSRTLCAGILKGGRDTCHGDSGGPLICNG----EMHGIVAGGSEPCGQHL  205 (234)
T ss_dssp             BCCSSCEEEEEEEECGGGTTTTCT--TSCTTSSEEEEECTTSSCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTT
T ss_pred             CCCccccccceEecCHHHhhhccc--CCCCCcceEEeecCCCCCccCCCCCCCeEEEeC----CcEEEEEEeCCCCCCCC
Confidence            467789999999999999998875  246789999998667788999999999999976    69999999976 88877


Q ss_pred             CCeEEEeCcchHHHHHhhhC
Q psy17330        165 FPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       165 ~p~vft~v~~~~~WI~~~i~  184 (184)
                      .|++||||+.|++||+++|+
T Consensus       206 ~p~vyt~V~~y~~WI~~~i~  225 (234)
T 3s9c_A          206 KPAVYTKVFDYNNWIQSIIA  225 (234)
T ss_dssp             CCEEEEEGGGGHHHHHHHHH
T ss_pred             CCcEEEEhHHhHHHHHHHHc
Confidence            89999999999999999873

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=100.00  E-value=3.3e-34  Score=217.09  Aligned_cols=153  Identities=27%  Similarity=0.420  Sum_probs=128.8

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.+|++||+|+.   .+|||||||+ ++.              ++++++||| ||..........+..++++|||.+..
T Consensus        70 ~v~~i~~hp~y~~~~~~~DiALl~L~-~~~--------------~~~~v~pic-Lp~~~~~~~~~~~~~~~v~GwG~~~~  133 (230)
T 2hlc_A           70 NSERIISHSMFNPDTYLNDVALIKIP-HVE--------------YTDNIQPIR-LPSGEELNNKFENIWATVSGWGQSNT  133 (230)
T ss_dssp             ECSEEEECTTCBTTTTBTCCEEEECS-CCC--------------CCSSCCCCB-CCCGGGGGCCCTTCEEEEEESSCCSS
T ss_pred             EEEEEEECCCCCCCCccccEEEEEec-CCC--------------cCCcEeeeE-cCCccccccccCCcEEEEEeeeecCC
Confidence            4788999999965   6799999999 888              999999999 88655433456789999999998764


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC--CCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCA  161 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~--~c~  161 (184)
                      ..   ..|++..+++++.++|++.+.  ...+++.++|++. ....+.|+||+||||+++.++  +|+||+||+.  .| 
T Consensus       134 ~~---~~l~~~~~~~~~~~~C~~~~~--~~~~~~~~~Ca~~-~~~~~~C~GDSGgPl~~~~~~--~l~Gi~S~g~~~~C-  204 (230)
T 2hlc_A          134 DT---VILQYTYNLVIDNDRCAQEYP--PGIIVESTICGDT-SDGKSPCFGDSGGPFVLSDKN--LLIGVVSFVSGAGC-  204 (230)
T ss_dssp             CC---CBCEEEEEEEECHHHHHTTSC--TTSSCTTEEEECC-TTSCBCCTTCTTCEEEEGGGT--EEEEEEEECCTTCT-
T ss_pred             CC---ceeEEEEEEEeCHHHhhhhhC--CCcccCCeEEecC-CCCCCcCCCCCCCeeEECcCC--EEEEEEEEeCCCCC-
Confidence            43   679999999999999998775  1257899999984 556789999999999998643  8999999986  56 


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..+.|++||||+.|++||+++++
T Consensus       205 ~~~~p~vyt~V~~~~~WI~~~~~  227 (230)
T 2hlc_A          205 ESGKPVGFSRVTSYMDWIQQNTG  227 (230)
T ss_dssp             TSCCCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCCCEEEEhHHhHHHHHHhhC
Confidence            45789999999999999999874

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=100.00  E-value=1.5e-34  Score=218.64  Aligned_cols=149  Identities=26%  Similarity=0.595  Sum_probs=127.4

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.+|++||+|+.   .+|||||||++|+.              ++++++||| ||..+    ...+..++++|||.+..
T Consensus        69 ~v~~i~~hp~y~~~~~~~DiALl~L~~~~~--------------~~~~v~pic-L~~~~----~~~~~~~~v~GwG~~~~  129 (226)
T 1azz_A           69 QSTDFTVHENYNSFVISNDIAVIRLPVPVT--------------LTAAIATVG-LPSTD----VGVGTVVTPTGWGLPSD  129 (226)
T ss_dssp             EECCEEECTTCBTTTTBSCCEEEECSSCCC--------------CCSSSCCCB-CCSSC----CCTTCEEEEEESSCSST
T ss_pred             EEEEEEECCCCCCCCCCCceEEEEECCccc--------------cCCCccccc-CCCCC----CCCCCEEEEEeCCccCC
Confidence            3578999999965   67999999999998              999999999 77544    26789999999998876


Q ss_pred             CC-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC--CC
Q psy17330         84 GG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KC  160 (184)
Q Consensus        84 ~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~--~c  160 (184)
                      .+ ..+..|++..+++++.++|+..+.    .+++.+||++. ....+.|+||+||||+++.    +|+||.||+.  .|
T Consensus       130 ~~~~~~~~L~~~~~~i~~~~~C~~~~~----~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~~C  200 (226)
T 1azz_A          130 SALGISDVLRQVDVPIMSNADCDAVYG----IVTDGNICIDS-TGGKGTCNGDSGGPLNYNG----LTYGITSFGAAAGC  200 (226)
T ss_dssp             TCSSSCSBCEECCEEEECHHHHHHHHS----CCCTTEEEECC-TTTCBCCTTCTTCEEEETT----EEEEEEEEEETTCT
T ss_pred             CCCCCCchhEEeeEEEEChhHhhhhhC----cCCCceEeecC-CCCCccCCCCCCcceEECC----EEEEEEEEECCCCC
Confidence            43 457789999999999999998774    47899999984 5667899999999999743    8999999997  56


Q ss_pred             CCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        161 AEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       161 ~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .. +.|++||||+.|++||+++++
T Consensus       201 ~~-~~p~vyt~V~~~~~WI~~~~~  223 (226)
T 1azz_A          201 EA-GYPDAFTRVTYFLDWIQTQTG  223 (226)
T ss_dssp             TS-CCCEEEEESGGGHHHHHHHHC
T ss_pred             CC-CCCCEEEEHHHHHHHHHHHhC
Confidence            54 789999999999999999874

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=100.00  E-value=7.8e-34  Score=214.44  Aligned_cols=151  Identities=28%  Similarity=0.418  Sum_probs=130.6

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCC-CCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPG-PAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~-~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      .+.++++| +|+.   .+|||||||++|+.              +++ .++||| ||...  .....+..++++|||.+.
T Consensus        72 ~v~~i~~h-~y~~~~~~~DIALl~L~~~v~--------------~~~~~v~pi~-lp~~~--~~~~~~~~~~v~GwG~~~  133 (228)
T 3h7o_A           72 YVSHVYLS-FYRQETMENDIAILELSRPLK--------------LDGLKSKPAK-LPDIE--FRPKTGSDVLVSGYGDGQ  133 (228)
T ss_dssp             CEEEEEES-SCBTTTTBTCCEEEEESSCCC--------------CCSSSSCCCB-CCCTT--CCCCTTCEEEEEECCCSS
T ss_pred             eEEEEEcc-ccCCCCccCCEEEEEECCccc--------------cccccccccc-CCccc--cCCCCCCeeEEEEEecCC
Confidence            56788999 8954   67999999999998              888 999999 77554  335788999999999988


Q ss_pred             CCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      ..+..+..|+.+.+++++.++|.+.+..  ..+++++||++.  ...+.|+||+||||+++.    .|+||+||+..|..
T Consensus       134 ~~~~~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~~Ca~~--~~~~~C~GDsGgPl~~~~----~l~Gi~S~g~~c~~  205 (228)
T 3h7o_A          134 TMDPKDHDLKSAQLTVVDLDECRTKYGP--IFLSLQVFCAQK--VGVSLESGDAGDPTVQQD----TLVGVAAYFPKRPE  205 (228)
T ss_dssp             CSCGGGGBCEEEEEEEECHHHHHHHHTT--SCCCSSEEEEEC--TTCCCCGGGTTCEEEETT----EEEEEECCCTTCCT
T ss_pred             CCCCcccccccceeEEEcHHHHHHHhcC--ccCCceEEecCC--CCCcCCCCCCCCcceecC----eEEEEEeecCcCCC
Confidence            7766678899999999999999998762  357899999983  338899999999999965    69999999988887


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                       +.|++||||+.|++||+++|+
T Consensus       206 -~~p~vyt~v~~~~~WI~~~i~  226 (228)
T 3h7o_A          206 -GAPEVFTKVGSYVSWIQDIIK  226 (228)
T ss_dssp             -TCCEEEEEGGGTHHHHHHHHT
T ss_pred             -CCCcEEEEHHHHHHHHHHHhh
Confidence             789999999999999999885

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=100.00  E-value=6.3e-33  Score=208.53  Aligned_cols=143  Identities=23%  Similarity=0.366  Sum_probs=123.1

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.+|++| +|+.   .+|||||||++|+.              ++++++||| ||....  ....+..|+++|||.+..
T Consensus        71 ~v~~i~~h-~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-L~~~~~--~~~~~~~~~v~GwG~~~~  132 (218)
T 2z7f_E           71 AVQRIFEN-GYDPVNLLNDIVILQLNGSAT--------------INANVQVAQ-LPAQGR--RLGNGVQCLAMGWGLLGR  132 (218)
T ss_dssp             EEEEEEES-CCBTTTTBSCCEEEEESSCCC--------------CSSSCCCCC-CCCTTC--CCCTTCEEEEEESSBCSS
T ss_pred             EEEEEEcc-CCCCCCCCCCEEEEEECCcCc--------------CCCceeccC-cCCCCC--CCCCCCEEEEEEeCCCCC
Confidence            46789999 9964   57999999999998              999999999 775543  346789999999999877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEe--cCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSY--GKKCA  161 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~--~~~c~  161 (184)
                      .+..+..|+...++++ .+.|.+.           ++|++......+.|+||+||||+++.    +|+||+||  +. |.
T Consensus       133 ~~~~~~~l~~~~~~~~-~~~C~~~-----------~~Ca~~~~~~~~~C~GDSGgPl~~~~----~l~Gi~S~~~g~-C~  195 (218)
T 2z7f_E          133 NRGIASVLQELNVTVV-TSLCRRS-----------NVCTLVRGRQAGVCFGDSGSPLVCNG----LIHGIASFVRGG-CA  195 (218)
T ss_dssp             SCCBCSBCEEEEEEEE-CTTCCTT-----------SEEEECTTSCCBCCTTCTTCEEEETT----EEEEEEEEESSS-TT
T ss_pred             CCCccchheEeeeEEe-hhHcCcc-----------eeeeccCCCCCeeCCCcCCCceEEcc----EEEEEEEeCCcc-CC
Confidence            6656788999999999 8999763           89998555577899999999999965    89999999  65 88


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ....|++||||+.|++||+++|+
T Consensus       196 ~~~~p~vyt~V~~~~~WI~~~~~  218 (218)
T 2z7f_E          196 SGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             CSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCCeEEEEHHHhHHHHHHHhC
Confidence            77789999999999999999985

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=236.90  Aligned_cols=155  Identities=25%  Similarity=0.566  Sum_probs=105.7

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCC----CCCCCcccCCCCCceeccCCCCeeeeEeec
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLP----GPAGPGCSLPWGEFRLDLSSGGLRGPGCLG   79 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~----~~v~piCllp~~~~~~~~~~~~~~~~~Gwg   79 (184)
                      .+.+|++||+|+.   .||||||||++|+.              ++    ..++||| ||....  ....+..++++|||
T Consensus       393 ~V~~ii~Hp~Y~~~~~~nDIALlkL~~~v~--------------~~~~~~~~v~Pic-Lp~~~~--~~~~g~~~~v~GWG  455 (565)
T 2xrc_A          393 YVDRIIFHENYNAGTYQNDIALIEMKKDGN--------------KKDCELPRSIPAC-VPWSPY--LFQPNDTCIVSGWG  455 (565)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEECCCSS--------------SSCSCCTTCCCCB-CCSCTT--SSCTTCEEEEEC--
T ss_pred             EEEEEEeCCCCCCCcccccceeeeeccccc--------------cccccccceeeee-cCCccc--ccCCCCEEEEEeCc
Confidence            4678999999965   67999999999987              44    3689999 886553  34578999999999


Q ss_pred             ccCCCCCCCcCceEEEEEeeCcccccccccccCCCCC-CCeEEeeecCCCCCCCCCCCCCeeEEEe-CCeEEEEEEEEec
Q psy17330         80 SVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN-ENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYG  157 (184)
Q Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~-~~~~C~~~~~~~~~~c~~d~G~pl~~~~-~~~~~L~Gi~s~~  157 (184)
                      .+..+. .+..|+.+.+++++.  |...+.   ..+. ..||||+......+.|+||+||||++.. +++|+|+||+|||
T Consensus       456 ~t~~~~-~~~~L~~~~v~i~~~--C~~~~~---~~~~~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~~~~~~lvGIvS~G  529 (565)
T 2xrc_A          456 REKDNE-RVFSLQWGEVKLISN--CSKFYG---NRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWG  529 (565)
T ss_dssp             ------------CEEEEEECSC--THHHHT---TSCCTTTEEEEEEC----------CCCEEEEECTTCCEEEEEEECC-
T ss_pred             cCCCCC-ccceeeEEeeeehHH--hHHhhc---cCcCCCceEEeCCCCCCCccCCCccccceEEEeCCCcEEEEEEEeeC
Confidence            887643 567899999999984  988775   3344 4599998656667899999999999985 6899999999999


Q ss_pred             CCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        158 KKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       158 ~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+|+..+.|++||||+.|++||+++|+
T Consensus       530 ~~C~~~~~PgVYTrVs~y~~WI~~~i~  556 (565)
T 2xrc_A          530 ENCGKPEFPGVYTKVANYFDWISYHVG  556 (565)
T ss_dssp             -----CCCCEEEEEGGGGHHHHHHHC-
T ss_pred             CCCCCCCCCEEEEEHHHHHHHHHHHhc
Confidence            999987889999999999999999874

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=100.00  E-value=1.3e-32  Score=207.73  Aligned_cols=143  Identities=28%  Similarity=0.455  Sum_probs=123.0

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .++++++| +|+.   .+|||||||++|+.              ++++++||| ||....  ....+..|+++|||.+..
T Consensus        72 ~v~~i~~h-~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pi~-L~~~~~--~~~~~~~~~v~GwG~~~~  133 (225)
T 1a7s_A           72 SISSMSEN-GYDPQQNLNDLMLLQLDREAN--------------LTSSVTILP-LPLQNA--TVEAGTRCQVAGWGSQRS  133 (225)
T ss_dssp             EEEEEECS-SCBTTTTBSCCEEEEESSCCC--------------CBTTBCCCC-CCCTTC--CCCTTCEEEEEESCCSST
T ss_pred             eEEEEecc-cccCCCCcCCEEEEEcCCccc--------------CCCceeEEE-cCCCcC--CCCCCCEEEEEeCCcCCC
Confidence            45778999 9964   57999999999998              999999999 775543  345789999999999877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEec-CCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~-~~c~~  162 (184)
                      .+..+..|+...+++++.++|++           +++|++......+.|+||+||||++++    +|+||+||+ ..|..
T Consensus       134 ~~~~~~~l~~~~~~~~~~~~C~~-----------~~~Ca~~~~~~~~~C~GDSGgPl~~~g----~l~Gi~S~g~~~C~~  198 (225)
T 1a7s_A          134 GGRLSRFPRFVNVTVTPEDQCRP-----------NNVCTGVLTRRGGICNGDGGTPLVCEG----LAHGVASFSLGPCGR  198 (225)
T ss_dssp             TCCCCSSCEEEEEEECCGGGSCT-----------TEEEEECSSSSCBCCTTCTTCEEEETT----EEEEEEEEECSSTTS
T ss_pred             CCCcccccceeeeEECCHHHhcc-----------CceEEeccCCCCCcccCCCcchheeCC----EEEEEEEEccCCcCC
Confidence            66667889999999999999965           789998655577899999999999984    999999999 66876


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .  |++||||+.|++||+++++
T Consensus       199 ~--p~vyt~V~~~~~WI~~~~~  218 (225)
T 1a7s_A          199 G--PDFFTRVALFRDWIDGVLN  218 (225)
T ss_dssp             S--CEEEEEGGGGHHHHHHHHH
T ss_pred             C--CcEEEEhHHhHHHHHHHhc
Confidence            4  9999999999999999873

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=100.00  E-value=1.3e-32  Score=238.91  Aligned_cols=156  Identities=31%  Similarity=0.542  Sum_probs=134.0

Q ss_pred             CCceEEEcCCCCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCC
Q psy17330          7 PDSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGP   86 (184)
Q Consensus         7 ~~~~i~~Hp~y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~   86 (184)
                      .++++++||.   .+|||||||++|+.              +++.|+||| ||...  .....+..++++|||.+... .
T Consensus       634 ~V~~i~~hp~---~nDIALLkL~~pv~--------------~s~~V~PIc-LP~~~--~~~~~g~~~~vsGWG~t~~~-~  692 (791)
T 4dur_A          634 EVSRLFLEPT---RKDIALLKLSSPAV--------------ITDKVIPAC-LPSPN--YVVADRTECFITGWGETQGT-F  692 (791)
T ss_dssp             EEEEEEECTT---CCSCEEEEESSCCC--------------CCSSCCCCB-CCCTT--CCCCTTCEEEEEECCCC----C
T ss_pred             EEEEEECCCC---CCceEEEEecCccc--------------cCCceeeee-ccCcc--cccCCCCEEEEEEeCCCCCC-C
Confidence            4678899997   47999999999998              999999999 77554  34567899999999988644 3


Q ss_pred             CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCC
Q psy17330         87 LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFP  166 (184)
Q Consensus        87 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p  166 (184)
                      .+..|+.+.+++++.++|..... ....++++||||+......+.|+||+||||++..+++|+|+||+|||.+|+..+.|
T Consensus       693 ~s~~L~~~~v~ii~~~~C~~~~~-~~~~i~~~~iCAg~~~gg~daC~GDSGGPLv~~~~~~~~LvGIvS~G~gC~~~~~P  771 (791)
T 4dur_A          693 GAGLLKEAQLPVIENKVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKP  771 (791)
T ss_dssp             CTTBCEEEEEEEECHHHHTSTTT-TTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEETTEEEEEEECCTTTCCBBTTBC
T ss_pred             CCCeeEEEEEEEeCHHHhhcccc-cCCCCCCCeEEeccCCCCCCCCCCCcccceEEEeCCeEEEEEEEEeCCCCCCCCCC
Confidence            56789999999999999987532 23568999999986667789999999999999999999999999999999988889


Q ss_pred             eEEEeCcchHHHHHhhhC
Q psy17330        167 GVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       167 ~vft~v~~~~~WI~~~i~  184 (184)
                      +|||||+.|++||+++|+
T Consensus       772 gVYTrVs~y~dWI~~~i~  789 (791)
T 4dur_A          772 GVYVRVSRFVTWIEGVMR  789 (791)
T ss_dssp             EEEEEGGGTHHHHHHHHH
T ss_pred             eEEEEHHHHHHHHHHHHH
Confidence            999999999999999874

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=8e-32  Score=202.75  Aligned_cols=144  Identities=25%  Similarity=0.390  Sum_probs=122.7

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++| +|+.   .+|||||||++|+.              ++++++||| ||....  ....+..|+++|||.+..
T Consensus        74 ~v~~i~~h-~y~~~~~~~DiALl~L~~~~~--------------~~~~v~pic-L~~~~~--~~~~~~~~~~~GwG~~~~  135 (221)
T 1fuj_A           74 SVAQVFLN-NYDAENKLNDILLIQLSSPAN--------------LSASVATVQ-LPQQDQ--PVPHGTQCLAMGWGRVGA  135 (221)
T ss_dssp             EEEEEEEC-CCBTTTTBCCCEEEEESSCCC--------------CCSSCCCCB-CCCTTC--CCCTTCEEEEEESSBSCS
T ss_pred             EEEEEEeC-CCCCCCCcccEEEEEeCCccc--------------cCCcceeeE-CCCCcC--CCCCCCEEEEEEeCCCCC
Confidence            35688999 9964   66999999999998              999999999 776543  346789999999999876


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC-CCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~-~c~~  162 (184)
                      .+..+..|+...++++ .+.|.+.           ++|+.......+.|+||+||||++++    +|+||.||+. +|..
T Consensus       136 ~~~~~~~l~~~~~~~~-~~~C~~~-----------~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~s~~~~gC~~  199 (221)
T 1fuj_A          136 HDPPAQVLQELNVTVV-TFFCRPH-----------NICTFVPRRKAGICFGDSGGPLICDG----IIQGIDSFVIWGCAT  199 (221)
T ss_dssp             SSCBCSBCEEEEEEEE-CTTCCTT-----------EEEEECSSSSCBCCTTCTTCEEEETT----EEEEEEEECSSSTTC
T ss_pred             CCCHHHHhhcccceEE-eeecCCc-----------eeeeccCCCCCCCCCCCCCCeeEECC----EEeEEEEEeccCCCC
Confidence            6666788999999999 8889652           89998655677899999999999954    8999999954 4887


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       200 ~~~p~vyt~v~~~~~WI~~~i~  221 (221)
T 1fuj_A          200 RLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             SSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCcEEEeHHHHHHHHHHHhC
Confidence            7789999999999999999986

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=99.98  E-value=1.9e-32  Score=228.08  Aligned_cols=163  Identities=21%  Similarity=0.423  Sum_probs=128.4

Q ss_pred             CCceEEEcCCCCC------------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCce---eccCCCC
Q psy17330          7 PDSSLHVIPSISD------------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFR---LDLSSGG   71 (184)
Q Consensus         7 ~~~~i~~Hp~y~~------------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~---~~~~~~~   71 (184)
                      ++.+|++||+|+.            .||||||||++|+.              |+++|+||| ||.....   .....+.
T Consensus       282 ~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~--------------~~~~v~pic-Lp~~~~~~~~~~~~~~~  346 (497)
T 1rrk_A          282 EIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK--------------YGQTIRPIC-LPCTEGTTRALRLPPTT  346 (497)
T ss_dssp             EEEEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCC--------------CBTTBCCCB-CTTBHHHHHHTTCCTTC
T ss_pred             eeEEEEeCCCccccccccccccccCCCcEEEEEECCCCc--------------CCCCeeeee-CCCCCccccccccCCCC
Confidence            5789999999974            57999999999998              999999999 7854321   2346788


Q ss_pred             eeeeEeecccCCCC-------CCCcCceEEEEEeeC---cccccccccc---c------CCCCCCCeEEeeecCC--CCC
Q psy17330         72 LRGPGCLGSVPGGG-------PLSPKLRHVQISVVD---NPKCRQIFSN---Y------GATINENILCAGVLSG--GKD  130 (184)
Q Consensus        72 ~~~~~Gwg~~~~~~-------~~~~~l~~~~~~~~~---~~~C~~~~~~---~------~~~~~~~~~C~~~~~~--~~~  130 (184)
                      .|++.|||......       ..+..|+...+++++   .++|.+.+..   +      ...++++|||++....  ..+
T Consensus       347 ~~~~~g~g~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~~~  426 (497)
T 1rrk_A          347 TCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPN  426 (497)
T ss_dssp             CHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCC
T ss_pred             chhcccccccCCccccceeeccCCCcceeeeEEEecCcccchhhhhhhhcccccccccccccCCCCeEEeCCCCCCCCCc
Confidence            99999999765321       235689999999998   6899874311   1      1357899999985432  468


Q ss_pred             CCCCCCCCeeEEEeCCeEEEEEEEEecC--CCC----CCCCCe----EEEeCcchHHHHHhhhC
Q psy17330        131 SCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCA----EVGFPG----VYTRVTNYIQWIADNIS  184 (184)
Q Consensus       131 ~c~~d~G~pl~~~~~~~~~L~Gi~s~~~--~c~----~~~~p~----vft~v~~~~~WI~~~i~  184 (184)
                      .|+||+||||+|..+++|+|+||+|||.  +|+    ..+.|+    +||||+.|++||+++|+
T Consensus       427 ~C~GDSGGPL~~~~~~~~~l~GIvS~g~~~~C~~~~~~~~~P~~~r~vyt~V~~~~~WI~~~~~  490 (497)
T 1rrk_A          427 TCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ  490 (497)
T ss_dssp             CCGGGTTCEEEEEETTEEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTT
T ss_pred             CCCCCCCCeeEEEeCCEEEEEEEEEecCCCCCCCccccCCCCCccceeeeeHHHHHHHHHHHhC
Confidence            9999999999999999999999999998  688    455674    99999999999999874

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=99.97  E-value=2.3e-31  Score=222.31  Aligned_cols=162  Identities=18%  Similarity=0.366  Sum_probs=125.2

Q ss_pred             CCceEEEcCCCCC------------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCce---eccCCCC
Q psy17330          7 PDSSLHVIPSISD------------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFR---LDLSSGG   71 (184)
Q Consensus         7 ~~~~i~~Hp~y~~------------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~---~~~~~~~   71 (184)
                      ++++|++||+|+.            .+|||||||++|+.              |+++|+||| ||.....   .....+.
T Consensus       291 ~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~--------------~~~~v~pic-Lp~~~~~~~~~~~~~g~  355 (509)
T 2odp_A          291 LIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVK--------------MSTHARPIC-LPCTMEANLALRRPQGS  355 (509)
T ss_dssp             CEEEEEECTTCCTTTTGGGTCCCCCTTCCEEEEESSCCC--------------CBTTBCCCB-CTTBHHHHHHTTCCTTC
T ss_pred             eeEEEEECCCCccccccccccccccCCCeEEEEECCccc--------------CCCCccccc-CCCCcccchhhccCCCC
Confidence            5789999999974            47999999999998              999999999 7854321   2245688


Q ss_pred             eeeeEeecccCCCCCCC----cCceEEEEEee---Ccccccccccc----c------CCCCCCCeEEeeecCCCCCCCCC
Q psy17330         72 LRGPGCLGSVPGGGPLS----PKLRHVQISVV---DNPKCRQIFSN----Y------GATINENILCAGVLSGGKDSCGG  134 (184)
Q Consensus        72 ~~~~~Gwg~~~~~~~~~----~~l~~~~~~~~---~~~~C~~~~~~----~------~~~~~~~~~C~~~~~~~~~~c~~  134 (184)
                      .|++.|||.........    ...+.+.+.++   +.++|.+.+..    +      ...++++|||++. ....+.|+|
T Consensus       356 ~~~~~g~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag~-~~~~~~C~G  434 (509)
T 2odp_A          356 TCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGT-QEDESPCKG  434 (509)
T ss_dssp             CHHHHHHHHSCSSEEEEEEECTTSCEEEEEEECTHHHHHHHHGGGGCTTTCTTCSSGGGTSCTTEEEECC-TTCCCCCGG
T ss_pred             ccccccccccccccceeeeecccCceeeEEEecCccHHHHHHHhhcccccccccccccccccCCEEEeCC-CCCCcccCC
Confidence            89999999765432111    11235566664   68899885321    1      2357899999984 567789999


Q ss_pred             CCCCeeEEEeCCeEEEEEEEEecC--CCC---------CCCCC------eEEEeCcchHHHHHhhhC
Q psy17330        135 DSGGPLMYPLDTKYYIIGVVSYGK--KCA---------EVGFP------GVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       135 d~G~pl~~~~~~~~~L~Gi~s~~~--~c~---------~~~~p------~vft~v~~~~~WI~~~i~  184 (184)
                      |+||||+|..+++|+|+||+|||.  +|+         ....|      ++||||+.|++||+++++
T Consensus       435 DSGGPL~~~~~~~~~l~GIvS~G~~~~C~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~~~~WI~~~~~  501 (509)
T 2odp_A          435 ESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLG  501 (509)
T ss_dssp             GTTCEEEEEETTEEEEEEEEEEESCCTTC-----CCCCCCCTTCSSCCCEEEEEGGGCHHHHHHHHT
T ss_pred             CccCceEEEECCeEEEEEEEEEcCCCCCCCcccccccccCcccCCCCCCceeeeHHHHhHHHHHHhC
Confidence            999999999999999999999997  586         23445      599999999999999874

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.97  E-value=1.3e-30  Score=226.18  Aligned_cols=163  Identities=20%  Similarity=0.382  Sum_probs=132.4

Q ss_pred             CCceEEEcCCCCC------------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCc---eeccCCCC
Q psy17330          7 PDSSLHVIPSISD------------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEF---RLDLSSGG   71 (184)
Q Consensus         7 ~~~~i~~Hp~y~~------------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~---~~~~~~~~   71 (184)
                      .+.+|++||+|+.            .+|||||||++|+.              ++++++||| ||....   ......+.
T Consensus       524 ~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALlkL~~pv~--------------~s~~v~pic-Lp~~~~~~~~~~~~~~~  588 (741)
T 3hrz_D          524 EIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK--------------YGQTIRPIC-LPCTEGTTRALRLPPTT  588 (741)
T ss_dssp             EEEEEEECTTCCTTTTGGGTCSCCCTTCCEEEEESSCCC--------------CCSSCCCCB-CTTBHHHHHHTTCCTTC
T ss_pred             EEEEEEECCCCCcccccccccCCccCCcEEEEEECCcCc--------------CCCCccccc-cCCcccccchhccCCCC
Confidence            4678999999973            56999999999998              999999999 775432   13356788


Q ss_pred             eeeeEeecccCCCC-------CCCcCceEEEEEeeC---cccccccccc---------cCCCCCCCeEEeeecC--CCCC
Q psy17330         72 LRGPGCLGSVPGGG-------PLSPKLRHVQISVVD---NPKCRQIFSN---------YGATINENILCAGVLS--GGKD  130 (184)
Q Consensus        72 ~~~~~Gwg~~~~~~-------~~~~~l~~~~~~~~~---~~~C~~~~~~---------~~~~~~~~~~C~~~~~--~~~~  130 (184)
                      .|++.|||.+....       .....|+...+++++   .+.|.+.+..         ....++++|||++...  ...+
T Consensus       589 ~~~~~gwg~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~~~~~~~~  668 (741)
T 3hrz_D          589 TCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPN  668 (741)
T ss_dssp             CHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESSSSSCCCC
T ss_pred             ccccccccccccccccceeccccccccccceeEeecCcccchhhhhhhhccccccccccccccCCCeEecCCcCCCCCCC
Confidence            99999999876543       125678999999998   7889884321         1246899999998543  2678


Q ss_pred             CCCCCCCCeeEEEeCCeEEEEEEEEecC--CCCC---CCCC-----eEEEeCcchHHHHHhhhC
Q psy17330        131 SCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCAE---VGFP-----GVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       131 ~c~~d~G~pl~~~~~~~~~L~Gi~s~~~--~c~~---~~~p-----~vft~v~~~~~WI~~~i~  184 (184)
                      .|+||+||||+++.+++|+|+||+|||.  .|..   .+.|     ++||||+.|++||+++|+
T Consensus       669 ~C~GDSGGPL~~~~~~~~~lvGIvS~G~~~~C~~~~~~~~p~~~~~~vyt~V~~~~~WI~~~i~  732 (741)
T 3hrz_D          669 TCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ  732 (741)
T ss_dssp             CCGGGTTCEEEEEETTEEEEEEEEEEESSCCCC------CCCTTCEEEEEEGGGSHHHHHHHTT
T ss_pred             cCcCcccCceEEeeCCeEEEEEEEeecCCcccCCcccccCCCCCccceEEEhHHhHHHHHHHhc
Confidence            9999999999999999999999999997  7987   5788     999999999999999885

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.94  E-value=1.9e-26  Score=152.27  Aligned_cols=93  Identities=31%  Similarity=0.797  Sum_probs=83.6

Q ss_pred             CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCC
Q psy17330         87 LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFP  166 (184)
Q Consensus        87 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p  166 (184)
                      .+..|+++.+++++.++|++.+.   ..++++||||+  ....+.|+||+||||+++.+++|+|+||+||+..|+..+.|
T Consensus         3 ~~~~L~~~~v~i~~~~~C~~~~~---~~i~~~~iCa~--~~~~~~C~GDSGGPL~~~~~~~~~l~GIvS~g~~c~~~~~p   77 (97)
T 1yph_E            3 TPDRLQQASLPLLSNTNCKKYWG---TKIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTP   77 (97)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHHHG---GGCCTTEEEEE--CSSCBCCTTCTTCEEEEEETTEEEEEEEEEECCTTCCTTSE
T ss_pred             cCccceEEEEEECCHHHhhHHhc---CCCCCceEeec--CCCCCCCcCCCCCcEEEEeCCeEEEEEEEEeCCCCCCCCCC
Confidence            35679999999999999998875   45889999998  45568999999999999999999999999999999887889


Q ss_pred             eEEEeCcchHHHHHhhhC
Q psy17330        167 GVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       167 ~vft~v~~~~~WI~~~i~  184 (184)
                      ++||||+.|++||+++++
T Consensus        78 ~vyt~V~~y~~WI~~~~~   95 (97)
T 1yph_E           78 GVYARVTALVNWVQQTLA   95 (97)
T ss_dssp             EEEEEHHHHHHHHHHHHH
T ss_pred             eEEEEHHHhHHHHHHHHc
Confidence            999999999999999873

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=99.93  E-value=5.1e-28  Score=181.28  Aligned_cols=133  Identities=11%  Similarity=0.093  Sum_probs=108.7

Q ss_pred             CCceEEEcCCCC----CCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSIS----DDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~----~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      ++.++++||+|+    ..+|||||||+++                ++++++|+| ||..+    ...+..++++|||.+.
T Consensus        78 ~v~~i~~hp~y~~~~~~~~DiAll~L~~~----------------~~~~v~pi~-l~~~~----~~~g~~~~~~Gwg~~~  136 (215)
T 1p3c_A           78 NMTEFYVPSGYINTGASQYDFAVIKTDTN----------------IGNTVGYRS-IRQVT----NLTGTTIKISGYPGDK  136 (215)
T ss_dssp             EEEEEECCHHHHHHCCGGGCCEEEEESSC----------------HHHHHCCCC-BCCCS----CCTTCEEEEEECCHHH
T ss_pred             EEEEEEeCCccccCCCcccCEEEEEECCC----------------Ccccceeee-cCCCc----ccCCCeEEEecCCCCC
Confidence            467899999993    3679999999985                446789999 77543    3678999999999764


Q ss_pred             CCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      .. ..+..|+...+++++.+.|...+.                  ..+.|+||+||||++.. +  +|+||.||+..|+ 
T Consensus       137 ~~-~~~~~l~~~~~~~~~~~~c~~~~~------------------~~~~C~GDSGgPl~~~~-g--~lvGi~S~g~~c~-  193 (215)
T 1p3c_A          137 MR-STGKVSQWEMSGSVTREDTNLAYY------------------TIDTFSGNSGSAMLDQN-Q--QIVGVHNAGYSNG-  193 (215)
T ss_dssp             HH-HHSSCCCEEEEEECCEECSSEEEE------------------CCCCCTTCTTCEEECTT-S--CEEEECCEEEGGG-
T ss_pred             cc-cccceechhccCccCcccchheee------------------ccccCCCCCCCeeEccC-C--eEEEEEecccCCC-
Confidence            42 235678999999999999987542                  35789999999999953 2  8999999998887 


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                       ..|++||||+.|++||+++++
T Consensus       194 -~~p~v~t~v~~~~~WI~~~~~  214 (215)
T 1p3c_A          194 -TINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             -TEEEEEBCCHHHHHHHHHHHT
T ss_pred             -ccCceeEechHHHHHHHHHhc
Confidence             569999999999999999864

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.84  E-value=8.8e-22  Score=144.23  Aligned_cols=124  Identities=19%  Similarity=0.199  Sum_probs=93.0

Q ss_pred             CCCCeEEEEece-ecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEE
Q psy17330         19 DDSHYQILHLEQ-RKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQIS   97 (184)
Q Consensus        19 ~~~DiAllkL~~-~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~   97 (184)
                      ..+|||||||++ ++.              +++.+.|+| ++.   ......|+.+.++||+..    .....++...++
T Consensus        60 ~~~DiAll~l~~~~~~--------------~~~~v~~~~-l~~---~~~~~~g~~v~~~Gw~~~----~~~g~l~~~~~~  117 (185)
T 2qa9_E           60 PNNDYGIVRYTNTTIP--------------KDGTVGGQD-ITS---AANATVGMAVTRRGSTTG----THSGSVTALNAT  117 (185)
T ss_dssp             SBSCEEEEEECCSSSC--------------CCCEETTEE-CCE---ECCCCTTCEEEEEETTTE----EEEEEEEEEEEE
T ss_pred             CCCCEEEEEecCCCcc--------------ccCccceee-eCC---cccCCCCCEEEEecCCCc----eeEeEEEEEEEE
Confidence            468999999998 777              788889999 652   234567999999999642    223456666666


Q ss_pred             eeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHH
Q psy17330         98 VVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ  177 (184)
Q Consensus        98 ~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~  177 (184)
                      + +...|. .+.    .+.+.++|+         |+||+||||++..    .|+||.||+..|+..+.|++||||+.|++
T Consensus       118 v-~~~~~~-~~~----~~~~~~~ca---------c~GDSGGPlv~~~----~~vGI~s~g~~~~~~~~p~vyt~v~~~~~  178 (185)
T 2qa9_E          118 V-NYGGGD-VVY----GMIRTNVCA---------EPGDSGGPLYSGT----RAIGLTSGGSGNCSSGGTTFFQPVTEALS  178 (185)
T ss_dssp             E-ECSTTC-EEE----EEEEESCCC---------CTTCTTCEEEETT----EEEEEEEEEEEETTTEEEEEEEEHHHHHH
T ss_pred             E-EcCCCC-EEe----ceEEecccC---------CCCCccceEEECC----EEEEEEEecCCCCCCCCcEEEEEHHHHHH
Confidence            5 333442 121    123466776         9999999999864    89999999988776678999999999999


Q ss_pred             HHHhhh
Q psy17330        178 WIADNI  183 (184)
Q Consensus       178 WI~~~i  183 (184)
                      ||+..+
T Consensus       179 wI~~~l  184 (185)
T 2qa9_E          179 AYGVSV  184 (185)
T ss_dssp             HHTCEE
T ss_pred             hhCcEE
Confidence            998654

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.81  E-value=2.2e-20  Score=144.07  Aligned_cols=129  Identities=17%  Similarity=0.156  Sum_probs=87.2

Q ss_pred             ceEEEcCCCCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCC
Q psy17330          9 SSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLS   88 (184)
Q Consensus         9 ~~i~~Hp~y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~   88 (184)
                      .++++||  +..+|||||||++++.                                   .+..++++|||.+...+...
T Consensus       102 ~~~i~h~--~~~nDIALLrL~~~v~-----------------------------------~~~~~~vsGWG~t~~~~~~~  144 (268)
T 1arb_A          102 GSTVKAT--YATSDFTLLELNNAAN-----------------------------------PAFNLFWAGWDRRDQNYPGA  144 (268)
T ss_dssp             CEEEEEE--ETTTTEEEEEESSCCC-----------------------------------GGGCCEEBCEECCSCCCSCE
T ss_pred             cceEecC--CCCCceEEEEecCCCC-----------------------------------CCCceEEeCcCccCCCCCcc
Confidence            4577888  4568999999999753                                   12346889999887553211


Q ss_pred             c--CceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC-CCCCC--
Q psy17330         89 P--KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAEV--  163 (184)
Q Consensus        89 ~--~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~-~c~~~--  163 (184)
                      .  .+....++.++...|......+...+.+.|+|++......+.|+||+||||++..   ++|+||+||+. .|...  
T Consensus       145 ~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~iCag~~~~~gdtC~gdsGgPl~~~~---~~~~Gi~s~g~~~C~~~~~  221 (268)
T 1arb_A          145 IAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSPE---KRVLGQLHGGPSSCSATGT  221 (268)
T ss_dssp             EEEECGGGCSCEEEEECSCCEEECTTSSSCSSEEEEECCTTSCCCCTTCTTCEEECTT---SCEEEEEEECSCCTTCCGG
T ss_pred             eeeccCCcccEEEEeeccccccccccccccCCeEEEeeecCCCCCccCcccCCcEeeC---CEEEEEEeecCcccCCCCC
Confidence            1  1112345556666665321112345678999997321123689999999999842   47999999997 68765  


Q ss_pred             CCCeEEEeCcchHH
Q psy17330        164 GFPGVYTRVTNYIQ  177 (184)
Q Consensus       164 ~~p~vft~v~~~~~  177 (184)
                      +.|++||||+.|.+
T Consensus       222 ~~p~vyt~v~~~~~  235 (268)
T 1arb_A          222 NRSDQYGRVFTSWT  235 (268)
T ss_dssp             GSEEEEEEHHHHHH
T ss_pred             CCCceEEEeeeeec
Confidence            38999999976653

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=99.75  E-value=2.1e-19  Score=134.87  Aligned_cols=116  Identities=17%  Similarity=0.202  Sum_probs=84.2

Q ss_pred             CCceEEEcCCCC----CCCCeEEEEecee--cccCcccccccCCcccCCCCCC-CcccCCCCCceeccCCCCeeeeEeec
Q psy17330          7 PDSSLHVIPSIS----DDSHYQILHLEQR--KKSKACKPSQLGGVARLPGPAG-PGCSLPWGEFRLDLSSGGLRGPGCLG   79 (184)
Q Consensus         7 ~~~~i~~Hp~y~----~~~DiAllkL~~~--~~~~~~~~~~l~~~~~~~~~v~-piCllp~~~~~~~~~~~~~~~~~Gwg   79 (184)
                      .++++++||+|+    .++|||||||++|  +.              +++.++ |+| ||..     ...+..++++|||
T Consensus        72 ~v~~~~~hp~y~~~~~~~~DiAll~L~~~~~~~--------------~~~~v~~~~~-l~~~-----~~~g~~~~v~GwG  131 (218)
T 3cp7_A           72 AAEELVTSAEWANRGDFEHDYAFAVLETKGGTT--------------VQQQVGTASP-IAFN-----QPRGQYYSAYGYP  131 (218)
T ss_dssp             EEEEEEECHHHHHHCCGGGCCEEEEECCBTTBC--------------HHHHHSCCBC-BCCS-----CCSSCEEEEEECC
T ss_pred             EEEEEEECcccccCCCCcCCEEEEEEeCCCCcC--------------hhHhcCcccc-eeec-----CCCCCEEEEEeCC
Confidence            467899999994    3579999999999  55              677788 899 6642     1468899999999


Q ss_pred             ccCCCCCCCcCceEEEEEeeCcccccccc-cccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC
Q psy17330         80 SVPGGGPLSPKLRHVQISVVDNPKCRQIF-SNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK  158 (184)
Q Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~C~~~~-~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~  158 (184)
                      .+.....  ..+          .+|.... ..........|+|+.        |.||+||||+++.+++++|+||+||+.
T Consensus       132 ~~~~~~~--~~l----------~~C~~~~~~~~~~~~~~~~~Ca~--------~~GDSGGPlv~~~~g~~~lvGIvS~G~  191 (218)
T 3cp7_A          132 AAAPFNG--QEL----------HSCHGTATNDPMGSSTQGIPCNM--------TGGSSGGPWFLGNGTGGAQNSTNSYGY  191 (218)
T ss_dssp             CSTTCCS--SSC----------EEEEEECEECTTSSSCEEEECCC--------CTTCTTCEEEESSSSSSCEEEECCEEE
T ss_pred             CCCCCCC--cee----------eEeeeeEEcCCCCCceEEecCCC--------CCCCcCCeeEEccCCCeEEEEEEcccc
Confidence            8643211  111          5676532 210012334789983        569999999999777889999999998


Q ss_pred             CCCC
Q psy17330        159 KCAE  162 (184)
Q Consensus       159 ~c~~  162 (184)
                      +|..
T Consensus       192 gc~~  195 (218)
T 3cp7_A          192 TFLP  195 (218)
T ss_dssp             TTEE
T ss_pred             CCCC
Confidence            8864

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.70  E-value=3.6e-17  Score=120.85  Aligned_cols=125  Identities=12%  Similarity=0.101  Sum_probs=81.3

Q ss_pred             CCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEE
Q psy17330         17 ISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQI   96 (184)
Q Consensus        17 y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~   96 (184)
                      |+..+|||||||+++.. +         ++.|++.+.|+| ||.     ....+..++++||+......    ..+....
T Consensus        73 ~~~~~DiAll~l~~~~~-~---------~~~~~~~v~pi~-l~~-----~~~~g~~v~v~G~p~g~~~~----~~~~~~~  132 (200)
T 2w7s_A           73 YPGKEDLAIVHVHETST-E---------GLNFNKNVSYTK-FAD-----GAKVKDRISVIGYPKGAQTK----YKMFEST  132 (200)
T ss_dssp             CSSSSSCEEEEECSBCT-T---------SCBGGGSCCCCC-BCC-----CCCTTCEEEEEECTTHHHHT----SCEEEEE
T ss_pred             CCCcceEEEEEECCCCC-C---------ccccccccccee-ccc-----cCCCCCEEEEEECCCCCCCc----cceEEeE
Confidence            55678999999998621 0         112778899999 651     34678999999986421110    1123344


Q ss_pred             EeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC-CCCCCeE-EEeCcc
Q psy17330         97 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGV-YTRVTN  174 (184)
Q Consensus        97 ~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~-~~~~p~v-ft~v~~  174 (184)
                      .+++.  +           ...++|..     ...|+||+||||++.. +  .|+||+||+..|+ ....+++ |+  +.
T Consensus       133 g~v~~--~-----------~~~~~~~~-----~~~~~GdSGGPl~~~~-g--~lvGI~s~g~~~~~~~~~~~v~~~--~~  189 (200)
T 2w7s_A          133 GTINH--I-----------SGTFMEFD-----AYAQPGNSGSPVLNSK-H--ELIGILYAGSGKDESEKNFGVYFT--PQ  189 (200)
T ss_dssp             EEEEE--E-----------ETTEEEEC-----SCCCTTCTTCEEECTT-S--CEEEEEEEEC----CCCEEEEECC--HH
T ss_pred             EEEEc--c-----------CCCEEEEc-----ceeCCCCccCeEECcC-C--EEEEEEeccccCCCCccceeeecH--HH
Confidence            44443  1           13456764     4689999999999742 2  7999999998774 2222356 55  89


Q ss_pred             hHHHHHhhhC
Q psy17330        175 YIQWIADNIS  184 (184)
Q Consensus       175 ~~~WI~~~i~  184 (184)
                      |++||+++++
T Consensus       190 ~~~wI~~~~~  199 (200)
T 2w7s_A          190 LKEFIQNNIE  199 (200)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHhhcc
Confidence            9999999874

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.69  E-value=6.5e-17  Score=122.92  Aligned_cols=131  Identities=13%  Similarity=0.082  Sum_probs=90.2

Q ss_pred             CceEEEcCCCCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCC
Q psy17330          8 DSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPL   87 (184)
Q Consensus         8 ~~~i~~Hp~y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~   87 (184)
                      +..+..|| |+..+|||||||++++..           ..++..+.|+| ||..   .....|..++++|||.....   
T Consensus       107 ~~~i~~~~-~~~~~DiAll~l~~~~~~-----------~~~~~~v~~i~-L~~~---~~~~~g~~~~v~Gwg~~~~~---  167 (242)
T 1agj_A          107 VKEILQEP-FGAGVDLALIRLKPDQNG-----------VSLGDKISPAK-IGTS---NDLKDGDKLELIGYPFDHKV---  167 (242)
T ss_dssp             EEEEESCT-TCTTSCCEEEEECCCTTS-----------CCHHHHSCCCE-ECCS---TTCCTTCEEEEEECCTTTST---
T ss_pred             EEEEEeCC-CCCCCcEEEEEEcCCCcc-----------cccccccccee-cCcc---ccCCCCCEEEEEeCCCCCCC---
Confidence            45678888 888899999999998630           01445689999 6633   23467899999999975432   


Q ss_pred             CcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC-CCCCC
Q psy17330         88 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFP  166 (184)
Q Consensus        88 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~-~~~~p  166 (184)
                       ..++...+.+++...               .++..     ...|+||+||||++..   +.|+||.||+.+|. .....
T Consensus       168 -~~l~~~~~~~~~~~~---------------~~~~~-----~~~c~GdSGGPl~~~~---g~lvGI~s~g~~c~~~~~~~  223 (242)
T 1agj_A          168 -NQMHRSEIELTTLSR---------------GLRYY-----GFTVPGNSGSGIFNSN---GELVGIHSSKVSHLDREHQI  223 (242)
T ss_dssp             -TCCEEEEEEECCGGG---------------SEEEE-----CCCCGGGTTCEEECTT---SEEEEEEEEEEECSSTTCEE
T ss_pred             -ccceeeeeeEecCCc---------------eEEEe-----CCcCCCCCchHhcccC---CEEEEEEeccccccCcCCCc
Confidence             245666666654321               12221     2579999999999742   28999999998887 33345


Q ss_pred             eEEEeCcchHH-HHHh
Q psy17330        167 GVYTRVTNYIQ-WIAD  181 (184)
Q Consensus       167 ~vft~v~~~~~-WI~~  181 (184)
                      .+.+.+..... +|++
T Consensus       224 ~~~~~i~~~~~~~l~~  239 (242)
T 1agj_A          224 NYGVGIGNYVKRIINE  239 (242)
T ss_dssp             EEEEECCHHHHHHHHH
T ss_pred             eeeEEehHHHHHHHHh
Confidence            77899975554 4444

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.69  E-value=7.2e-17  Score=124.58  Aligned_cols=129  Identities=12%  Similarity=0.140  Sum_probs=87.8

Q ss_pred             ceEEEcCCCCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCC
Q psy17330          9 SSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLS   88 (184)
Q Consensus         9 ~~i~~Hp~y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~   88 (184)
                      .+++.|+   ..+|||||||++++...           .|+..+.|+| |+...   ....+..++++|||....     
T Consensus        83 ~~i~~~~---~~~DIALLkL~~~~~~~-----------~~~~~v~pi~-L~~~~---~~~~g~~v~v~Gwg~~~~-----  139 (268)
T 1wcz_A           83 EQITKYS---GEGDLAIVKFSPNEQNK-----------HIGEVVKPAT-MSNNA---ETQVNQNITVTGYPGDKP-----  139 (268)
T ss_dssp             EEEEECS---SSSCCEEEEECCCTTSC-----------CHHHHSCCCC-BCCCS---SCCTTCEEEEEECCTTSS-----
T ss_pred             EEEecCC---CCCcEEEEEecCccccc-----------ccccccceee-ccccc---ccCCCCEEEEEECCCCCC-----
Confidence            4566664   46799999999986300           0456789999 66432   346789999999996431     


Q ss_pred             cCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeE
Q psy17330         89 PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV  168 (184)
Q Consensus        89 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~v  168 (184)
                      ..++.....+++.             +...++|..     ...|+||+||||++..   +.|+||+||+..|+. + +.+
T Consensus       140 ~~~~~~~~g~i~~-------------~~~~~i~~~-----~~~c~GdSGGPLv~~~---g~lvGIvS~G~~~~~-~-~~~  196 (268)
T 1wcz_A          140 VATMWESKGKITY-------------LKGEAMQYD-----LSTTGGNSGSPVFNEK---NEVIGIHWGGVPNEF-N-GAV  196 (268)
T ss_dssp             TTCEEEEEEEEEE-------------EETTEEEES-----BCCCTTCTTCEEECTT---SCEEEEEEEEETTTE-E-EEE
T ss_pred             CceEEeecceEEe-------------eCCCeEEEe-----cccCCCCccCeEEccC---CEEEEEEeCCccCCc-c-eeE
Confidence            1233333333321             234577764     4789999999999642   379999999988864 2 455


Q ss_pred             EEeCcchHHHHHhhhC
Q psy17330        169 YTRVTNYIQWIADNIS  184 (184)
Q Consensus       169 ft~v~~~~~WI~~~i~  184 (184)
                      ++ ++.|++||+++|+
T Consensus       197 ~~-~~~~~~wI~~~i~  211 (268)
T 1wcz_A          197 FI-NENVRNFLKQNIE  211 (268)
T ss_dssp             EC-CHHHHHHHHHHCT
T ss_pred             Ec-CHHHHHHHHHHHH
Confidence            44 7899999998763

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.69  E-value=1.8e-16  Score=122.67  Aligned_cols=130  Identities=12%  Similarity=0.127  Sum_probs=87.7

Q ss_pred             CceEEEcCCCCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCC
Q psy17330          8 DSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPL   87 (184)
Q Consensus         8 ~~~i~~Hp~y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~   87 (184)
                      +.+|+.|+   ..+|||||||++++...           .|+..+.|+| |+..   .....+..++++|||.....   
T Consensus        82 ~~~i~~~~---~~~DIALLkL~~~~~~~-----------~~~~~v~pi~-L~~~---~~~~~g~~v~v~Gwg~~~~~---  140 (274)
T 2o8l_A           82 AEQITKYS---GEGDLAIVKFSPNEQNK-----------HIGEVVKPAT-MSNN---AETQTNQNITVTGYPGDKPV---  140 (274)
T ss_dssp             EEEEEECS---SSSCCEEEEECCCTTSC-----------CTTTSSCCCE-ECCC---TTCCTTCEEEEEECCTTSST---
T ss_pred             EEEEEeCC---CCCcEEEEEecCccccc-----------cccccccccc-cccc---ccccCCCEEEEEECCCCCCC---
Confidence            34566775   35799999999986300           1677899999 6532   23567899999999964311   


Q ss_pred             CcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCe
Q psy17330         88 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPG  167 (184)
Q Consensus        88 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~  167 (184)
                        .++......++.             +...++|..     ...|+||+||||++..   +.|+||+||+..|+..  +.
T Consensus       141 --~~~~~~~g~i~~-------------~~~~~i~~~-----~~~c~GdSGGPLv~~~---g~lvGIvS~G~~~~~~--~~  195 (274)
T 2o8l_A          141 --ATMWESKGKITY-------------LKGEAMQYD-----LSTTGGNSGSPVFNEK---NEVIGIHWGGVPNEFN--GA  195 (274)
T ss_dssp             --TCEEEEEEEEEE-------------EETTEEEES-----CCCCTTCTTCEEECTT---SCEEEEEEEEETTTEE--EE
T ss_pred             --ceEEecCceEEe-------------cCCCeEEeC-----cccCCCCchhheeccC---CeEEEEEeCcccCCCC--ce
Confidence              122222222211             124567663     4789999999999742   3799999999888642  44


Q ss_pred             EEEeCcchHHHHHhhhC
Q psy17330        168 VYTRVTNYIQWIADNIS  184 (184)
Q Consensus       168 vft~v~~~~~WI~~~i~  184 (184)
                      ++ .++.|++||+++++
T Consensus       196 ~~-~~~~~~~wI~~~i~  211 (274)
T 2o8l_A          196 VF-INENVRNFLKQNIE  211 (274)
T ss_dssp             EE-CCHHHHHHHHHHCT
T ss_pred             EE-ecHHHHHHHHHHHh
Confidence            44 47899999998763

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.67  E-value=6.7e-17  Score=119.50  Aligned_cols=134  Identities=14%  Similarity=0.160  Sum_probs=84.1

Q ss_pred             ceEEEcCCCCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCC
Q psy17330          9 SSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLS   88 (184)
Q Consensus         9 ~~i~~Hp~y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~   88 (184)
                      .+|+.|+   ..+|||||||+++.....      ..+..|++.+.|+| |+.     ....+..++++|||......   
T Consensus        67 ~~i~~~~---~~~DiAll~l~~~~~~~~------~~~~~~~~~v~pi~-l~~-----~~~~g~~~~~~G~g~~~~~~---  128 (204)
T 2vid_A           67 KKIINYP---GKEDVSVIQVEERAIERG------PKGFNFNDNVTPFK-YAA-----GAKAGERIKVIGYPHPYKNK---  128 (204)
T ss_dssp             EEEEECS---SSSCCEEEEECSEEEEEE------TTEEEHHHHCCCCC-BCS-----CCCTTCEEEEEECCCCCC-----
T ss_pred             eEEecCC---CCCeEEEEEEcCcccccc------cccccccccccccc-cCC-----cCCCCCEEEEEeCCCCCCCC---
Confidence            3445443   467999999996532100      00112667889999 652     34678999999999743221   


Q ss_pred             cCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC---CCCCCC
Q psy17330         89 PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK---CAEVGF  165 (184)
Q Consensus        89 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~---c~~~~~  165 (184)
                      ..+ ......++.             +...++|..     ...|+||+||||++.   .+.|+||.|++..   |...+.
T Consensus       129 ~~~-~~~~g~v~~-------------~~~~~~~~~-----~~~~~GdSGGPl~~~---~g~lvGI~s~g~~~~~~~~~~~  186 (204)
T 2vid_A          129 YVL-YESTGPVMS-------------VEGSSIVYS-----AHTESGNSGSPVLNS---NNELVGIHFASDVKNDDNRNAY  186 (204)
T ss_dssp             CCC-EEEEEEEEE-------------EETTEEEEC-----CCCCGGGTTCEEECT---TSCEEEEEEEECC---CCCCEE
T ss_pred             cce-EeeccEEee-------------ccCCeEEEe-----cccCCCCccCcEECC---CCeEEEEEecCccCCCcccccc
Confidence            111 111122211             235678874     468999999999964   2379999999874   444333


Q ss_pred             CeEEEeCcchHHHHHhhhC
Q psy17330        166 PGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       166 p~vft~v~~~~~WI~~~i~  184 (184)
                       .+|.. +.|.+||+++++
T Consensus       187 -~~~~~-~~~~~wI~~~~~  203 (204)
T 2vid_A          187 -GVYFT-PEIKKFIAENID  203 (204)
T ss_dssp             -EECCC-HHHHHHHHHHSC
T ss_pred             -eeEeC-HHHHHHHHhhcC
Confidence             45444 889999999874

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.55  E-value=3.1e-15  Score=108.92  Aligned_cols=122  Identities=16%  Similarity=0.084  Sum_probs=81.1

Q ss_pred             CCCCeEEEEeceecccCcccccccCCcccCCCCCCCc----ccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEE
Q psy17330         19 DDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPG----CSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHV   94 (184)
Q Consensus        19 ~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~pi----Cllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~   94 (184)
                      ..+|||||||+++..              ++..+.++    | ++..  ......|+.+.+.||+...    ....++..
T Consensus        52 ~~~DiAlikl~~~~~--------------~~~~v~~i~~~~~-~~~~--~~~~~~G~~v~~~G~~~~~----t~G~v~~~  110 (181)
T 2sga_A           52 PNNDYGIIRHSNPAA--------------ADGRVYLYNGSYQ-DITT--AGNAFVGQAVQRSGSTTGL----RSGSVTGL  110 (181)
T ss_dssp             SBSCEEEEEESCGGG--------------CCCEEECSSSCEE-ECCE--ECCCCTTCEEEEEETTTEE----EEEEEEEE
T ss_pred             CCCCEEEEEccCCCc--------------ccceEEecCCcce-eecc--cccCCCCCEEEEeecCCCc----cEEEEEEe
Confidence            357999999999876              66667777    7 4321  2345678999998986431    12235555


Q ss_pred             EEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcc
Q psy17330         95 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN  174 (184)
Q Consensus        95 ~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~  174 (184)
                      .+++ +...+. .+.        .++++.     .-.|+||+||||++..    .++||.||+..|+....|++|++|+.
T Consensus       111 ~~~v-~~~~~~-~~~--------~~i~~~-----~c~~~GDSGGPlv~~~----~~vGI~s~g~~~~~~~~~~v~~~v~~  171 (181)
T 2sga_A          111 NATV-NYGSSG-IVY--------GMIQTN-----VCAQPGDSGGSLFAGS----TALGLTSGGSGNCRTGGTTFYQPVTE  171 (181)
T ss_dssp             EEEE-ECGGGC-EEE--------EEEEES-----CCCCTTCTTCEEEETT----EEEEEEEEEEEETTTEEEEEEEEHHH
T ss_pred             EEEE-ECCCCC-EEe--------eeEecc-----cccCCCCCCCEEEECC----EEEEEEEeeCCCCcCCCceEEEEHHH
Confidence            5554 333332 111        122221     1235799999999865    89999999876444456999999999


Q ss_pred             hHHHHH
Q psy17330        175 YIQWIA  180 (184)
Q Consensus       175 ~~~WI~  180 (184)
                      |++|+.
T Consensus       172 ~~~~l~  177 (181)
T 2sga_A          172 ALSAYG  177 (181)
T ss_dssp             HHHHHT
T ss_pred             HHHhcC
Confidence            999985

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=99.49  E-value=5e-14  Score=97.27  Aligned_cols=59  Identities=14%  Similarity=0.178  Sum_probs=49.9

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      .++++++||+|+.   .+|||||||++|+.              |+++++||| ||..+.  ....+..|+++|||.+.
T Consensus        69 ~v~~i~~hp~y~~~~~~~DIALl~L~~~~~--------------~~~~v~pic-Lp~~~~--~~~~g~~~~v~GWG~t~  130 (131)
T 1yph_C           69 KIAKVFKNSKYNSLTINNDITLLKLSTAAS--------------FSQTVSAVC-LPSASD--DFAAGTTCVTTGWGLTR  130 (131)
T ss_dssp             EEEEEEECTTCCTTTCCSCCEEEEESSCCC--------------CBTTBCCCB-CCCTTC--CCCTTCEEEEEESCCSC
T ss_pred             EEEEEEeCCCCCCCCCCCCEEEEEECCccc--------------CCCcCcceE-CCCccc--CCCCCCEEEEEcCCccC
Confidence            4678999999965   67999999999998              999999999 775542  34578999999999864

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=99.43  E-value=1.7e-12  Score=96.44  Aligned_cols=128  Identities=13%  Similarity=0.079  Sum_probs=80.6

Q ss_pred             CCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEE
Q psy17330         17 ISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQI   96 (184)
Q Consensus        17 y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~   96 (184)
                      |+..+|||||||+.+.....      ..++.|++.+.|+| |+.     ....|..++++||+......   ..+ ....
T Consensus        73 ~~~~~DiAll~l~~~~~~~~------~~~~~~~~~v~~i~-l~~-----~~~~g~~v~v~G~p~~~~~~---~~l-~~~~  136 (210)
T 2as9_A           73 YPGDEDISVMNIEEQAVERG------PKGFNFNENVQAFN-FAK-----DAKVDDKIKVIGYPLPAQNS---FKQ-FEST  136 (210)
T ss_dssp             CSSSSSCEEEEECSEEEEEE------TTEEEGGGSCCCCC-BCS-----CCCTTCEEEEEECSSTTTTT---SCC-EEEE
T ss_pred             CCCCCcEEEEEecCcccccc------ccccccccccceee-cCC-----CCCCCCEEEEEeCCCCCCCC---cce-EEee
Confidence            55678999999998421000      00112778899999 651     35678999999998633221   122 4455


Q ss_pred             EeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeC-cch
Q psy17330         97 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV-TNY  175 (184)
Q Consensus        97 ~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v-~~~  175 (184)
                      .+++..             ...++|+.     ...|+||+||||++.. |  .|+||.||+........ ..|+.. ...
T Consensus       137 g~v~~~-------------~~~~i~~~-----~~~~~GdSGGPlv~~~-g--~lvGI~s~g~~~~~~~~-~~~~~~~~~i  194 (210)
T 2as9_A          137 GTIKRI-------------KDNILNFD-----AYIEPGNSGSPVLNSN-N--EVIGVVYGGIGKIGSEY-NGAVYFTPQI  194 (210)
T ss_dssp             EEEEEE-------------ETTEEEEE-----CCCCTTCTTCEEECTT-S--CEEEEECCSCCCTTCSS-EEEEECCHHH
T ss_pred             eEEccc-------------cCCeEEEc-----CccCCCCccCcEECCC-C--eEEEEEecccccCCccc-cccEEEcHHH
Confidence            555432             13577875     3679999999999743 2  69999999875332222 235554 556


Q ss_pred             HHHHHhh
Q psy17330        176 IQWIADN  182 (184)
Q Consensus       176 ~~WI~~~  182 (184)
                      .+|++..
T Consensus       195 ~~f~~~~  201 (210)
T 2as9_A          195 KDFIQKH  201 (210)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            6777653

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=99.34  E-value=1.3e-12  Score=99.40  Aligned_cols=107  Identities=16%  Similarity=0.083  Sum_probs=70.3

Q ss_pred             CceEEEcCCCCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCC
Q psy17330          8 DSSLHVIPSISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPL   87 (184)
Q Consensus         8 ~~~i~~Hp~y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~   87 (184)
                      +..+..|| |+..+|||||||+.++...           .++..+.|+| ||...   ....|..++++||+.....   
T Consensus       101 ~~~i~~hp-~~~~~DiALLkl~~~~~~~-----------~~~~~v~~i~-L~~~~---~~~~g~~v~v~G~p~g~~~---  161 (246)
T 1qtf_A          101 AEEIKESP-YGQGLDLAIIKLKPNEKGE-----------SAGDLIQPAN-IPDHI---DIAKGDKYSLLGYPYNYSA---  161 (246)
T ss_dssp             EEEEESCT-TCTTSCCEEEEECCCTTSC-----------CHHHHSCCCC-CCSSC---CCCTTCEEEEEECCTTTST---
T ss_pred             EEEEEeCC-CCCCCCEEEEEEeCCcccc-----------ccccceeeee-cCCcc---ccCCCCEEEEEECCCCCCC---
Confidence            45678899 8878899999999987200           0445689999 76432   3467899999999653221   


Q ss_pred             CcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCC
Q psy17330         88 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKC  160 (184)
Q Consensus        88 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c  160 (184)
                      . .+....+++.+      ..                 ......|+||+||||++.. +  .|+||.||+..+
T Consensus       162 ~-~~~~~~~~~~~------~~-----------------~~~~~~~~GdSGGPlv~~~-g--~lvGI~s~g~~~  207 (246)
T 1qtf_A          162 Y-SLYQSQIEMFN------DS-----------------QYFGYTEVGNSGSGIFNLK-G--ELIGIHSGKGGQ  207 (246)
T ss_dssp             T-CCEEEEEEESS------SS-----------------BEESCCCGGGTTCEEECTT-C--CEEEEEEEEETT
T ss_pred             c-eeEeeeeeecC------cE-----------------EEeCCCCCCCchhheECCC-C--EEEEEEeccccC
Confidence            1 12223333332      00                 0012579999999999642 2  799999998643

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=99.05  E-value=1.1e-09  Score=79.97  Aligned_cols=123  Identities=15%  Similarity=0.123  Sum_probs=74.2

Q ss_pred             CCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEEe
Q psy17330         19 DDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISV   98 (184)
Q Consensus        19 ~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~   98 (184)
                      +.+|+|||||+.+....  ..+.+.     +  -.++. +.   .......|+.+...||...    .....+......+
T Consensus        59 ~~~DiAlikl~~~~~~~--~~v~~~-----~--g~~~~-i~---~~~~~~~G~~v~~~G~~~g----~t~G~v~~~~~~v  121 (187)
T 1hpg_A           59 PTNDYGIVRYTDGSSPA--GTVDLY-----N--GSTQD-IS---SAANAVVGQAIKKSGSTTK----VTSGTVTAVNVTV  121 (187)
T ss_dssp             SBSCEEEEEECSSCCCC--SEEECS-----S--SCEEE-CC---EECCCCTTCEEEEEETTTE----EEEEEEEEEEEEE
T ss_pred             CCCCEEEEEeCCCCCcC--ceEEec-----C--Cceee-ec---cccCCCCCCEEEEEEcCCC----EeEEEEEEeEEEE
Confidence            35799999998764411  000100     0  01122 21   1234567889999998642    1112222222222


Q ss_pred             eCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC-CCCCCCCeEEEeCcchHH
Q psy17330         99 VDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQ  177 (184)
Q Consensus        99 ~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~-c~~~~~p~vft~v~~~~~  177 (184)
                      .        +.   .....+++|+.     ...|+||+||||++..    .++||.|++.. |.. ..+.+|++|..+++
T Consensus       122 ~--------~~---~~~~~~~i~t~-----~~~~~GdSGgpl~~~~----~~vGi~s~~~~~~~~-~~~~~~~~i~~~~~  180 (187)
T 1hpg_A          122 N--------YG---DGPVYNMVRTT-----ACSAGGDSGGAHFAGS----VALGIHSGSSGCSGT-AGSAIHQPVTEALS  180 (187)
T ss_dssp             E--------ET---TEEEEEEEEEC-----CCCCTTCTTCEEEETT----EEEEEEEEESCCBTT-BCCCEEEEHHHHHH
T ss_pred             E--------eC---CCeEeeeEEec-----cccCCCCCCCeEEECC----EEEEEEEeeCCCCCC-CCceEEEEHHHHHH
Confidence            1        11   11235688885     3568899999999864    89999999876 654 56899999999887


Q ss_pred             HH
Q psy17330        178 WI  179 (184)
Q Consensus       178 WI  179 (184)
                      .+
T Consensus       181 ~l  182 (187)
T 1hpg_A          181 AY  182 (187)
T ss_dssp             HH
T ss_pred             Hc
Confidence            65

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=99.00  E-value=3.2e-09  Score=80.34  Aligned_cols=128  Identities=13%  Similarity=0.060  Sum_probs=80.5

Q ss_pred             CCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEE
Q psy17330         18 SDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQIS   97 (184)
Q Consensus        18 ~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~   97 (184)
                      +..+|||||||+.+..                 .+.|++ |+..   .....|+.++++||+....        .....-
T Consensus       100 d~~~DlAllkl~~~~~-----------------~~~~~~-l~~s---~~~~~G~~v~~iG~p~g~~--------~~vt~G  150 (239)
T 1l1j_A          100 DEELDIAVIKIKASDK-----------------KFPYLE-FGDS---DKVKIGEWAIAIGNPLGFQ--------HTVTVG  150 (239)
T ss_dssp             ETTTTEEEEEBCCSSS-----------------CCCCCE-ECCG---GGCCTTCEEEEEECTTSSS--------CEEEEE
T ss_pred             cCCCCEEEEEEcCCCC-----------------CCceEE-ecCc---cCCccccEEEEEECCCCCC--------CcEEEE
Confidence            4567999999997632                 356778 5432   2456799999999975321        123333


Q ss_pred             eeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHH
Q psy17330         98 VVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ  177 (184)
Q Consensus        98 ~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~  177 (184)
                      +++...|.-... ........++|+.     ...|+|++||||+... |  .|+||.+++..-...........+....+
T Consensus       151 ivs~~~r~~~~~-~~~~~~~~~i~td-----a~i~~G~SGGPLv~~~-G--~vvGI~s~~~~~~~~~g~~faIP~~~~~~  221 (239)
T 1l1j_A          151 VVSATNRRIPKP-DGSGYYVGLIQTD-----AAINPGNSGGPLLNIH-G--EVIGINTAIVNPQEAVNLGFAIPINTVKK  221 (239)
T ss_dssp             EEEEEEEEEECT-TSSCEEEEEEEES-----SCCCTTTTTSEEECSS-S--EEEEEECCCSCCCSCCSCEEEEEHHHHHH
T ss_pred             EEeccccccccC-CCccccCCEEEEC-----CCCCCCCccHHhccCC-C--eEEEEEeeeecCCCcCceEEEEEHHHHHH
Confidence            444443431100 0001134678874     4689999999999642 2  79999999765111123467788888888


Q ss_pred             HHHhhh
Q psy17330        178 WIADNI  183 (184)
Q Consensus       178 WI~~~i  183 (184)
                      ++++.+
T Consensus       222 ~~~~l~  227 (239)
T 1l1j_A          222 FLDTIL  227 (239)
T ss_dssp             HHGGGC
T ss_pred             HHHHHH
Confidence            888765

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.96  E-value=1.2e-09  Score=87.02  Aligned_cols=126  Identities=16%  Similarity=0.068  Sum_probs=80.6

Q ss_pred             CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEEee
Q psy17330         20 DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVV   99 (184)
Q Consensus        20 ~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~   99 (184)
                      .+|||||||+.+..                 .+.|++ |+...   ....|+.++++||+.....     .+....+..+
T Consensus        99 ~~DlAlLkl~~~~~-----------------~~~~i~-l~~s~---~~~~G~~v~~iG~p~g~~~-----~~~~g~vs~~  152 (348)
T 3qo6_A           99 DKDVAVLRIDAPKN-----------------KLRPIP-VGVSA---DLLVGQKVFAIGNPFGLDH-----TLTTGVISGL  152 (348)
T ss_dssp             GGTEEEEECCCCGG-----------------GCCCCC-BCCST---TCCTTCEEEEEECGGGCTT-----EEEEEEEEEE
T ss_pred             cCCEEEEEEcCCCC-----------------CceeEE-ecCcc---cCCCCCEEEEEECCCCCCC-----cEeEEEEEee
Confidence            46999999987632                 356677 55332   3567999999999864322     2334444444


Q ss_pred             CcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC-CCCCCCCeEEEeCcchHHH
Q psy17330        100 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQW  178 (184)
Q Consensus       100 ~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~-c~~~~~p~vft~v~~~~~W  178 (184)
                      ....|.....    ......+++.     ...|.|++||||+... |  .++||.|+... +........++.+....+|
T Consensus       153 ~~~~~~~~~~----~~~~~~i~~d-----a~i~~G~SGGPLvn~~-G--~vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~  220 (348)
T 3qo6_A          153 RREISSAATG----RPIQDVIQTD-----AAINPGNSGGPLLDSS-G--TLIGINTAIYSPSGASSGVGFSIPVDTVGGI  220 (348)
T ss_dssp             EEEECCSSSS----SCEEEEEEEC-----SCCCTTCTTCEEECTT-S--CEEEEEEEEECSSSSCSSCEEEEEHHHHHHH
T ss_pred             ccccccccCC----CcccCEEEEe-----CCcCCCCcHHHhhCCC-C--eEEEEEEeeecCCCCcccEEEEEEecchHHH
Confidence            4444432211    0111234442     3678999999999752 2  69999998754 3333456888999999999


Q ss_pred             HHhhh
Q psy17330        179 IADNI  183 (184)
Q Consensus       179 I~~~i  183 (184)
                      |++.+
T Consensus       221 ~~~l~  225 (348)
T 3qo6_A          221 VDQLV  225 (348)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=98.92  E-value=6.5e-10  Score=81.23  Aligned_cols=42  Identities=33%  Similarity=0.429  Sum_probs=35.3

Q ss_pred             CCCCCCeeEEEeCCeEEEEEEEEecCC-CCCCCCCeEEEeCcchHHHH
Q psy17330        133 GGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWI  179 (184)
Q Consensus       133 ~~d~G~pl~~~~~~~~~L~Gi~s~~~~-c~~~~~p~vft~v~~~~~WI  179 (184)
                      +||+||||+++.    .++||.|++.. |.. ..+.+|++|..+++|.
T Consensus       134 ~GDSGgpl~~~~----~~vGi~s~~~~~c~~-~~~~~~~pi~~~l~~~  176 (189)
T 2ea3_A          134 PGDSGGSLLAGN----QAQGVTSGGSGNCRT-GGTTFFQPVNPILQAY  176 (189)
T ss_dssp             TTCTTCEEEETT----EEEEEEEEEEEETTT-EEEEEEEEHHHHHHHH
T ss_pred             CCCccCeEEECC----EEEEEEeecCCCCCC-CCcEEEEEHHHHHHHC
Confidence            689999999743    79999999876 543 4589999999999886

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=98.91  E-value=6.3e-09  Score=78.46  Aligned_cols=121  Identities=17%  Similarity=0.118  Sum_probs=71.9

Q ss_pred             CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEEee
Q psy17330         20 DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVV   99 (184)
Q Consensus        20 ~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~   99 (184)
                      .+|||||||+.                   ..+.|++ |+ .   .....|..++++||+....     ..+....+...
T Consensus       102 ~~DiAll~l~~-------------------~~~~~~~-l~-~---~~~~~G~~v~v~G~p~g~~-----~~~~~g~v~~~  152 (237)
T 3k6y_A          102 SVDVAILAVPH-------------------LPPPPLV-FA-A---EPAKTGADVVVLGYPGGGN-----FTATPARIREA  152 (237)
T ss_dssp             TTTEEEEECTT-------------------CCSCCCC-BC-S---SCCCTTCEEEEEECGGGCS-----CEEEEEEEEEE
T ss_pred             CCCEEEEEeCC-------------------CCCCcee-cC-C---CCCCCCCEEEEEECCCCCC-----CccceeEEEee
Confidence            47999999982                   1356778 55 1   2456799999999976321     12233333333


Q ss_pred             CcccccccccccCCC-CCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHHH
Q psy17330        100 DNPKCRQIFSNYGAT-INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQW  178 (184)
Q Consensus       100 ~~~~C~~~~~~~~~~-~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~W  178 (184)
                      ....|...+..  .. ....+++.     ....|.||+||||++.. |  .|+||.+++..-..  .......+....++
T Consensus       153 ~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~GdSGGPLv~~~-G--~vvGI~s~~~~~~~--~~~~aip~~~v~~~  220 (237)
T 3k6y_A          153 IRLSGPDIYGD--PEPVTRDVYTI-----RADVEQGDSGGPLIDLN-G--QVLGVVFGAAIDDA--ETGFVLTAGEVAGQ  220 (237)
T ss_dssp             EEEEECCTTCC--SSCEEEEEEEE-----ESCCCTTCTTCEEECTT-S--CEEEEEEEECSSST--TEEEEEEHHHHHGG
T ss_pred             EeecccccccC--CCcccccEEEe-----cCccCCCccHHHEECCC-C--EEEEEEEeeccCCC--cEEEEEEHHHHHHH
Confidence            34445444330  00 11123333     24679999999999743 2  69999998754221  12555666666666


Q ss_pred             HHh
Q psy17330        179 IAD  181 (184)
Q Consensus       179 I~~  181 (184)
                      |++
T Consensus       221 l~~  223 (237)
T 3k6y_A          221 LAK  223 (237)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            654

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=98.89  E-value=5.6e-09  Score=78.56  Aligned_cols=121  Identities=10%  Similarity=0.064  Sum_probs=70.4

Q ss_pred             CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEEee
Q psy17330         20 DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVV   99 (184)
Q Consensus        20 ~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~   99 (184)
                      .+|||||||+.+..                  +.|++ |+..   .....|+.++++||+...     ........+.-.
T Consensus       109 ~~DlAlL~l~~~~~------------------~~~~~-l~~~---~~~~~G~~v~~~G~p~g~-----~~~~~~g~vs~~  161 (231)
T 3tjo_A          109 KADIALIKIDHQGK------------------LPVLL-LGRS---SELRPGEFVVAIGSPFSL-----QNTVTTGIVSTT  161 (231)
T ss_dssp             TTTEEEEECCCSSC------------------CCCCC-BCCG---GGCCTTCEEEEEEEEETT-----EEEEEEEEEEEC
T ss_pred             CCCEEEEEecCCCC------------------CCcee-cCCc---CCCCCCCEEEEEECCCCC-----CCceeeEEEeec
Confidence            57999999987533                  34555 4322   345679999999997531     111122222222


Q ss_pred             CcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHHHH
Q psy17330        100 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI  179 (184)
Q Consensus       100 ~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~WI  179 (184)
                      ....+...+.    .....++|+.     ...|.|++||||+... |  .|+||.+|+..++    -...+.+....+|+
T Consensus       162 ~~~~~~~~~~----~~~~~~i~~d-----a~i~~G~SGGPLv~~~-G--~vVGI~s~~~~~g----~~~aip~~~i~~~l  225 (231)
T 3tjo_A          162 QRGGKELGLR----NSDMDYIQTD-----AIINYGNAGGPLVNLD-G--EVIGINTLKVTAG----ISFAIPSDKIKKFL  225 (231)
T ss_dssp             C-----------------CCEEES-----SCCCTTTTTSEEECTT-S--CEEEEEEEEEETT----EEEEEEHHHHHHHH
T ss_pred             cccccccccC----CCcccEEEEc-----CCcCCCCchhHeecCC-C--eEEEEEeEEecCC----eEEEEEHHHHHHHH
Confidence            2211111111    1122345553     3578899999999543 2  6999999975432    36678888888998


Q ss_pred             Hhhh
Q psy17330        180 ADNI  183 (184)
Q Consensus       180 ~~~i  183 (184)
                      ++..
T Consensus       226 ~~~~  229 (231)
T 3tjo_A          226 TESH  229 (231)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.75  E-value=8.6e-08  Score=75.52  Aligned_cols=129  Identities=16%  Similarity=0.040  Sum_probs=76.7

Q ss_pred             CCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEE
Q psy17330         17 ISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQI   96 (184)
Q Consensus        17 y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~   96 (184)
                      |+..+|||||||+.+.                  .+.|++ |+..   .....|+.++++||......        ....
T Consensus        83 ~d~~~DlAllkl~~~~------------------~~~~~~-l~~~---~~~~~G~~v~~~G~p~g~~~--------~~~~  132 (324)
T 1y8t_A           83 ADPTSDIAVVRVQGVS------------------GLTPIS-LGSS---SDLRVGQPVLAIGSPLGLEG--------TVTT  132 (324)
T ss_dssp             CCTTTTEEEEEECSCC------------------SCCCCE-ECCS---TTCCTTCEEEEEECGGGCTT--------EEEE
T ss_pred             eCCCCCEEEEEECCCC------------------CCceEE-ecCc---ccCCCCCEEEEEEcCCCCCC--------cEee
Confidence            4567899999999762                  256777 5432   23467899999999542111        1122


Q ss_pred             EeeCcccccccccc-cC-CCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC--------CCCCC
Q psy17330         97 SVVDNPKCRQIFSN-YG-ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA--------EVGFP  166 (184)
Q Consensus        97 ~~~~~~~C~~~~~~-~~-~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~--------~~~~p  166 (184)
                      -+++...+.-.... .+ ......++|+.     ...|.|++||||+... |  .++||.+++..-.        .....
T Consensus       133 G~vs~~~~~~~~~~~~g~~~~~~~~i~~d-----~~~~~G~SGGPlv~~~-G--~vvGI~s~~~~~~~~~~~~~~~~~g~  204 (324)
T 1y8t_A          133 GIVSALNRPVSTTGEAGNQNTVLDAIQTD-----AAINPGNSGGALVNMN-A--QLVGVNSAIATLGADSADAQSGSIGL  204 (324)
T ss_dssp             EEEEEEEEEECC-------CCCEEEEEEC-----SCCCTTCTTEEEECTT-S--EEEEEEEEECCC-------CCCCSSC
T ss_pred             eEEeecccccccccccCcccccCCEEEEc-----CCCCCCCccCcEECCC-C--eEEEEEeeecccCcccccccccccce
Confidence            22222222110000 00 12345688884     3679999999999753 2  7999999864321        11124


Q ss_pred             eEEEeCcchHHHHHhhh
Q psy17330        167 GVYTRVTNYIQWIADNI  183 (184)
Q Consensus       167 ~vft~v~~~~~WI~~~i  183 (184)
                      ..+..+....+++++.+
T Consensus       205 ~~aIP~~~v~~~l~~l~  221 (324)
T 1y8t_A          205 GFAIPVDQAKRIADELI  221 (324)
T ss_dssp             EEEEEHHHHHHHHHHHH
T ss_pred             EEecCHHHHHHHHHHHH
Confidence            67778887788876643

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=98.70  E-value=3e-07  Score=69.25  Aligned_cols=122  Identities=13%  Similarity=0.004  Sum_probs=73.7

Q ss_pred             CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEEee
Q psy17330         20 DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVV   99 (184)
Q Consensus        20 ~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~   99 (184)
                      .+||||||++.+..                  +.|++ |+..   .....|..+++.||+....     ..+....+..+
T Consensus        99 ~~DlAll~l~~~~~------------------~~~~~-l~~~---~~~~~G~~v~~~G~p~~~~-----~~~~~g~vs~~  151 (237)
T 3lgi_A           99 LTDLAVLKINATGG------------------LPTIP-INAR---RVPHIGDVVLAIGNPYNLG-----QTITQGIISAT  151 (237)
T ss_dssp             TTTEEEEECCCSSC------------------CCCCC-CCTT---CCCCTTBEEEEEECGGGSC-----SEEEEEEEEEE
T ss_pred             CCCEEEEEecCCCC------------------CceEe-ccCc---ccCCCCCEEEEEECCCCCC-----CcEEEEEEEec
Confidence            46999999987642                  34555 4432   3456789999999975321     12223333333


Q ss_pred             CcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC----CCCCeEEEeCcch
Q psy17330        100 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE----VGFPGVYTRVTNY  175 (184)
Q Consensus       100 ~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~----~~~p~vft~v~~~  175 (184)
                      ....+..       ......+++.     ...|.|++||||+.. +|  .++||.++......    .........+...
T Consensus       152 ~~~~~~~-------~~~~~~i~~d-----~~i~~G~SGGPlv~~-~G--~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i  216 (237)
T 3lgi_A          152 GRIGLNP-------TGRQNFLQTD-----ASINHGNSGGALVNS-LG--ELMGINTLSFDKSNDGETPEGIGFAIPFQLA  216 (237)
T ss_dssp             CCSSCCT-------TSCSCCEEEC-----SCCCTTCTTCEEECT-TC--CEEEEECCCCCCCTTSCCCCSCEEEEEHHHH
T ss_pred             ccccccC-------CCcCCEEEEc-----CccCCCCchHHeeCC-CC--eEEEEEeeeeccCCCCcCcCceEEEEEHHHH
Confidence            3222211       1223445553     246899999999975 33  69999999654321    1223566777788


Q ss_pred             HHHHHhhh
Q psy17330        176 IQWIADNI  183 (184)
Q Consensus       176 ~~WI~~~i  183 (184)
                      .+++++.+
T Consensus       217 ~~~~~~l~  224 (237)
T 3lgi_A          217 TKIMDKLI  224 (237)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887764

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.69  E-value=1.3e-07  Score=74.85  Aligned_cols=120  Identities=10%  Similarity=0.070  Sum_probs=66.0

Q ss_pred             CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEEee
Q psy17330         20 DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVV   99 (184)
Q Consensus        20 ~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~   99 (184)
                      .+|||||||+.+..                  +.+++ ++..   .....|..++++||+....     .......+...
T Consensus        92 ~~DlAlL~l~~~~~------------------~~~~~-l~~~---~~~~~G~~v~~~G~p~g~~-----~~~~~g~vs~~  144 (332)
T 3num_A           92 KADIALIKIDHQGK------------------LPVLL-LGRS---SELRPGEFVVAIGSPFSLQ-----NTVTTGIVSTT  144 (332)
T ss_dssp             TTTEEEEEECCSSC------------------CCCCC-BCCT---TSCCTTCEEEEECC----------CCEEEEEEEEC
T ss_pred             CCCeEEEEEcCCCC------------------Cceee-ecCc---ccCCCCCEEEEEECCCCCC-----cceeeeEEEee
Confidence            46999999987632                  34455 4322   2356789999999985321     12223333333


Q ss_pred             CcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHHHH
Q psy17330        100 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI  179 (184)
Q Consensus       100 ~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~WI  179 (184)
                      ....+...+.    ......+++.     ...|.|++||||+...+   .++||.+|+...+    ....+.+.....|+
T Consensus       145 ~~~~~~~~~~----~~~~~~i~~d-----~~i~~G~SGGPlv~~~G---~vvGI~s~~~~~g----~~~aip~~~i~~~l  208 (332)
T 3num_A          145 QRGGKELGLR----NSDMDYIQTD-----AIINYGNAGGPLVNLDG---EVIGINTLKVTAG----ISFAIPSDKIKKFL  208 (332)
T ss_dssp             ------------------CCEEES-----SCCCTTTTTSEEEETTS---CEEEEEEEEEETT----EEEEEEHHHHHHHH
T ss_pred             cccccccCcC----CCcCCEEEEE-----CCcCCCCcHHHhhCCCC---cEEEEEeeEeccc----ceEEECHHHHHHHH
Confidence            3332222221    1122445553     25678999999997532   6999999975432    36667777777777


Q ss_pred             Hhh
Q psy17330        180 ADN  182 (184)
Q Consensus       180 ~~~  182 (184)
                      ++.
T Consensus       209 ~~~  211 (332)
T 3num_A          209 TES  211 (332)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.67  E-value=3.9e-08  Score=77.58  Aligned_cols=121  Identities=12%  Similarity=0.068  Sum_probs=77.0

Q ss_pred             CCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEE
Q psy17330         17 ISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQI   96 (184)
Q Consensus        17 y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~   96 (184)
                      |+..+||||||++.+..                  +.|++ |+..   .....|+.++++||+....        .....
T Consensus        90 ~d~~~DlAllkl~~~~~------------------~~~~~-l~~~---~~~~~G~~v~~~G~p~~~~--------~~v~~  139 (325)
T 1lcy_A           90 VDPVADIATLRIQTKEP------------------LPTLP-LGRS---ADVRQGEFVVAMGSPFALQ--------NTITS  139 (325)
T ss_dssp             EETTTTEEEEECCCSSC------------------CCCCC-BCCG---GGCCTTCEEEECCCTTSSS--------SCCEE
T ss_pred             ECCCCCEEEEEEcCCCC------------------CceEE-eccc---ccCCCCCEEEEEECCCCCC--------CcEEe
Confidence            35578999999986532                  45666 4422   2456799999999986321        23456


Q ss_pred             EeeCccccccc-ccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcch
Q psy17330         97 SVVDNPKCRQI-FSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  175 (184)
Q Consensus        97 ~~~~~~~C~~~-~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~  175 (184)
                      -+++...|... +.  .......++|+.     ...|.|++||||+... |  .|+||.+++...    ....++.+...
T Consensus       140 G~vs~~~~~~~~~g--~~~~~~~~i~~d-----~~~~~G~SGGPl~~~~-G--~vVGI~s~~~~~----g~~~aip~~~i  205 (325)
T 1lcy_A          140 GIVSSAQRPARDLG--LPQTNVEYIQTD-----AAIDFGNAGGPLVNLD-G--EVIGVNTMKVTA----GISFAIPSDRL  205 (325)
T ss_dssp             EEBCSCSCC-----------CCCCEEES-----SCCSTTTTTSEEEETT-S--CEEEEEEEEEET----TEEEEEEHHHH
T ss_pred             EEEecccccccccC--CCCCCCCEEEEc-----CCCCCCCccccEECCC-C--EEEEEEeEeecC----CeeEEEEHHHH
Confidence            67777777532 11  012456789985     3579999999999753 3  799999987431    12455666665


Q ss_pred             HHHHHh
Q psy17330        176 IQWIAD  181 (184)
Q Consensus       176 ~~WI~~  181 (184)
                      .+|+++
T Consensus       206 ~~~l~~  211 (325)
T 1lcy_A          206 REFLHR  211 (325)
T ss_dssp             HHHTCC
T ss_pred             HHHHHH
Confidence            666543

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.58  E-value=4.5e-07  Score=71.25  Aligned_cols=125  Identities=11%  Similarity=-0.003  Sum_probs=77.4

Q ss_pred             CCCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEE
Q psy17330         17 ISDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQI   96 (184)
Q Consensus        17 y~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~   96 (184)
                      |+..+||||||++.+.                  .+.|++ |+..   .....|+.++++||....     ..   ....
T Consensus        85 ~d~~~DlAllk~~~~~------------------~~~~~~-l~~~---~~~~~G~~v~~~G~p~g~-----~~---~~~~  134 (318)
T 1te0_A           85 SDSLTDLAVLIIKATG------------------GLPTIP-INAR---RVPHIGDVVLAIGNPYNL-----GQ---TITQ  134 (318)
T ss_dssp             EETTTTEEEEECCCSS------------------CCCCCC-CCTT---CCCCTTCEEEEECCCSSS-----SC---CEEE
T ss_pred             eCCCceEEEEEEeCCC------------------CCceEE-eeCc---cCCCCCCEEEEEEcCCCC-----CC---cEEe
Confidence            3456799999998762                  245666 5422   245679999999975421     11   2233


Q ss_pred             EeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC----CCCCCeEEEeC
Q psy17330         97 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA----EVGFPGVYTRV  172 (184)
Q Consensus        97 ~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~----~~~~p~vft~v  172 (184)
                      -+++..... .+.   ......++|+.     ...|.|++||||+... |  .++||.+++....    .......+..+
T Consensus       135 g~vs~~~~~-~~~---~~~~~~~i~~d-----~~~~~G~SGGPl~~~~-G--~vvGI~s~~~~~~~~~~~~~~~~~aip~  202 (318)
T 1te0_A          135 GIISATGRI-GLN---PTGRQNFLQTD-----ASINHGNSGGALVNSL-G--ELMGINTLSFDKSNDGETPEGIGFAIPF  202 (318)
T ss_dssp             EEEEECCCC-CCC---TTCSCCSEEES-----SCCCTTTTTSEEECTT-C--CEEEEEECCSSSSSSCCSCCSCEEEEEH
T ss_pred             eEEeccccc-ccC---CCCcCCEEEEC-----CCCCCCCCcCceECCC-C--eEEEEEeeeeccCCccccccceEEeccH
Confidence            344332211 111   12345688874     3679999999999753 3  7999999875421    11234677888


Q ss_pred             cchHHHHHhhh
Q psy17330        173 TNYIQWIADNI  183 (184)
Q Consensus       173 ~~~~~WI~~~i  183 (184)
                      .....|+++.+
T Consensus       203 ~~i~~~l~~l~  213 (318)
T 1te0_A          203 QLATKIMDKLI  213 (318)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888887653

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=98.57  E-value=3e-08  Score=72.16  Aligned_cols=49  Identities=31%  Similarity=0.561  Sum_probs=36.8

Q ss_pred             CCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC-CCCCCCCeEEEeCcchHHH
Q psy17330        116 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQW  178 (184)
Q Consensus       116 ~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~-c~~~~~p~vft~v~~~~~W  178 (184)
                      .+.++|+.         +||+||||+++.    .++||.||+.. |.. ..+.+|++|..+++-
T Consensus       129 ~~~~~c~~---------~GDSGgpl~~~~----~~vGi~s~g~~~c~~-~~~~~~~pi~~~l~~  178 (186)
T 2pfe_A          129 TRTTACAE---------GGDSGGPWLTGS----QAQGVTSGGTGDCRS-GGITFFQPINPLLSY  178 (186)
T ss_dssp             EEESCCCC---------TTCTTCEEEETT----EEEEEEEEEEEETTT-EEEEEEEEHHHHHHH
T ss_pred             EeccEEec---------CCCccCeEEECC----EEEEEEeecCCCCCC-CCcEEEEEHHHHHHH
Confidence            34456764         689999999744    79999999865 543 457999999877653

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=98.49  E-value=1.8e-06  Score=65.38  Aligned_cols=122  Identities=15%  Similarity=0.024  Sum_probs=72.4

Q ss_pred             CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEEee
Q psy17330         20 DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVV   99 (184)
Q Consensus        20 ~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~   99 (184)
                      .+||||||++.+..                  +.++. |..   ......|+.++++||.....     .   ....-++
T Consensus       110 ~~DlAlLkv~~~~~------------------~~~~~-l~~---s~~~~~G~~v~aiG~P~g~~-----~---~vt~G~v  159 (245)
T 3sti_A          110 QSDIALLQIQNPSK------------------LTQIA-IAD---SDKLRVGDFAVAVGNPFGLG-----Q---TATSGIV  159 (245)
T ss_dssp             TTTEEEEEESSCCS------------------CCCCC-BCC---GGGCCTTBEEEEEECGGGSC-----C---EEEEEEE
T ss_pred             CCCEEEEEeccCCC------------------Cceee-ecC---cCCCCCCCEEEEEECCCCCC-----C---cEEeeEE
Confidence            47999999976433                  23344 332   13456899999999854211     1   2233344


Q ss_pred             CcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC-CCCCCeEEEeCcchHHH
Q psy17330        100 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTRVTNYIQW  178 (184)
Q Consensus       100 ~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~-~~~~p~vft~v~~~~~W  178 (184)
                      +...+... .   ......++|+.     ...|.|++||||+... |  .|+||.++..... ........+.+....++
T Consensus       160 s~~~~~~~-~---~~~~~~~i~td-----a~i~~G~SGGPLvn~~-G--~vVGI~s~~~~~~~~~~g~~faIP~~~~~~~  227 (245)
T 3sti_A          160 SALGRSGL-N---LEGLENFIQTD-----ASINRGNSGGALLNLN-G--ELIGINTAILAPGGGSVGIGFAIPSNMARTL  227 (245)
T ss_dssp             EECSSCSS-C---CTTCSSCEEES-----SCCCTTTTTSEEECTT-S--CEEEEEECCC------CCCEEEEEHHHHHHH
T ss_pred             eeeccccc-C---CCCccCEEEEc-----CCcCCCcchhHeecCC-C--eEEEEEEeEECCCCCcceEEEEEeHHHHHHH
Confidence            43333311 1   12234567764     2568899999999543 2  7999999865432 11224667788888888


Q ss_pred             HHhhh
Q psy17330        179 IADNI  183 (184)
Q Consensus       179 I~~~i  183 (184)
                      +++.+
T Consensus       228 ~~~l~  232 (245)
T 3sti_A          228 AQQLI  232 (245)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87765

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=98.31  E-value=3.9e-07  Score=66.34  Aligned_cols=40  Identities=33%  Similarity=0.504  Sum_probs=31.5

Q ss_pred             CCCCCCeeEEEeCCeEEEEEEEEecCC-CCCCCCCeEEEeCcchHH
Q psy17330        133 GGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQ  177 (184)
Q Consensus       133 ~~d~G~pl~~~~~~~~~L~Gi~s~~~~-c~~~~~p~vft~v~~~~~  177 (184)
                      +||+||||++..    .++||.|++.. |.. ..+.+|+++..+++
T Consensus       140 ~GDSGgpl~~~~----~~vGi~s~~~~~~~~-~~~~~~~pi~~~l~  180 (188)
T 2oua_A          140 PGDSGGSFISGT----QAQGVTSGGSGNCRT-GGTTFYQEVNPMLN  180 (188)
T ss_dssp             TTCTTCEEEETT----EEEEEEEEEEEETTT-EEEEEEEESHHHHH
T ss_pred             CCCccceEEECC----EEEEEEeccCCCCCC-CCceEEEEHHHHHH
Confidence            689999999644    79999999865 654 34689999987654

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.05  E-value=5.2e-05  Score=60.16  Aligned_cols=121  Identities=14%  Similarity=0.018  Sum_probs=68.7

Q ss_pred             CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEEee
Q psy17330         20 DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVV   99 (184)
Q Consensus        20 ~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~   99 (184)
                      ..||||||++.+..                  +.++. +..   ......|+.++++||.....        .....-++
T Consensus       110 ~~DlAlLkv~~~~~------------------~~~~~-l~~---s~~~~~G~~V~aiG~p~g~~--------~~vt~G~V  159 (345)
T 3stj_A          110 QSDIALLQIQNPSK------------------LTQIA-IAD---SDKLRVGDFAVAVGNPFGLG--------QTATSGIV  159 (345)
T ss_dssp             TTTEEEEEESSCCS------------------CCCCC-BCC---GGGCCTTBEEEEEECGGGCS--------CEEEEEEE
T ss_pred             CCCEEEEEEcccCC------------------CceEe-ecC---cccCCCCCEEEEEECCCCCC--------CcEEeeEE
Confidence            36999999976533                  23333 321   23456889999999964321        12233334


Q ss_pred             CcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCC-CCCCCCeEEEeCcchHHH
Q psy17330        100 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKC-AEVGFPGVYTRVTNYIQW  178 (184)
Q Consensus       100 ~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c-~~~~~p~vft~v~~~~~W  178 (184)
                      +...+... .   ......++++.     ...|.|++||||+... |  .++||.++...- ......+....+.....+
T Consensus       160 s~~~~~~~-~---~~~~~~~iq~d-----a~i~~GnSGGPLvn~~-G--~vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~  227 (345)
T 3stj_A          160 SALGRSGL-N---LEGLENFIQTD-----ASINRGNSGGALLNLN-G--ELIGINTAILAPGGGSVGIGFAIPSNMARTL  227 (345)
T ss_dssp             EEEEECCS-S---SSSSCCEEEEC-----SCCCTTCTTCEEECTT-S--CEEEEEEEEECTTSSCSSCEEEEEHHHHHHH
T ss_pred             eeeccccc-C---CCCccCEEEEe-----cccCCCcCccceeCCC-C--EEEEEEeccccCCCCcceeEEEEehHHHHHH
Confidence            33333211 1   12234556653     3568899999999653 2  699999875432 221223555666666666


Q ss_pred             HHhh
Q psy17330        179 IADN  182 (184)
Q Consensus       179 I~~~  182 (184)
                      +++.
T Consensus       228 ~~~l  231 (345)
T 3stj_A          228 AQQL  231 (345)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.62  E-value=0.0008  Score=54.97  Aligned_cols=121  Identities=13%  Similarity=0.014  Sum_probs=66.2

Q ss_pred             CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEEee
Q psy17330         20 DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVV   99 (184)
Q Consensus        20 ~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~   99 (184)
                      ..||||||++.+..                  +.++. +..   ......|..++++||.....     .   ....-++
T Consensus       110 ~~DlAllkv~~~~~------------------l~~~~-l~~---s~~~~~G~~v~aiG~P~g~~-----~---~vt~G~v  159 (436)
T 4a8c_A          110 QSDIALLQIQNPSK------------------LTQIA-IAD---SDKLRVGDFAVAVGNPFGLG-----Q---TATSGIV  159 (436)
T ss_pred             CCCEEEEEecCCCC------------------CceEe-ccC---cccCCCCCEEEEEEcCCCCC-----c---cEEEEEE
Confidence            46999999975432                  23444 321   23456789999999953211     1   1222333


Q ss_pred             CcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC-CCCCCeEEEeCcchHHH
Q psy17330        100 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTRVTNYIQW  178 (184)
Q Consensus       100 ~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~-~~~~p~vft~v~~~~~W  178 (184)
                      +...+... .   ..-....+.+.     ...|.|++||||+...+   .++||.++..... .....+....+.....+
T Consensus       160 s~~~r~~~-~---~~~~~~~iq~d-----a~i~~GnSGGPl~n~~G---~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~  227 (436)
T 4a8c_A          160 SALGRSGL-N---LEGLENFIQTD-----ASINRGNAGGALLNLNG---ELIGINTAILAPGGGSVGIGFAIPSNMARTL  227 (436)
T ss_pred             eeeccccc-C---CCCccCEEEEc-----CccCCCCCcCcccCCCC---EEEEEEeeeccCCCCceeEEEEEehHHHHHH
Confidence            33222211 1   11123445543     25678999999997542   7999998754422 11122445555556666


Q ss_pred             HHhh
Q psy17330        179 IADN  182 (184)
Q Consensus       179 I~~~  182 (184)
                      +++.
T Consensus       228 ~~~l  231 (436)
T 4a8c_A          228 AQQL  231 (436)
T ss_pred             HHHH
Confidence            6554

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.42  E-value=0.0016  Score=53.48  Aligned_cols=101  Identities=17%  Similarity=0.085  Sum_probs=50.8

Q ss_pred             ccCCCCeeeeEe--ecccCCCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE
Q psy17330         66 DLSSGGLRGPGC--LGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP  143 (184)
Q Consensus        66 ~~~~~~~~~~~G--wg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~  143 (184)
                      ....|..++++|  ||.....  .........+.-+.+..    +.   ......++++.     ...+.|++||||+..
T Consensus       147 ~~~~G~~V~aiG~P~G~~~~~--~~~~vt~Givs~~~r~~----~~---~~~~~~~iqtd-----a~i~~GnSGGPl~n~  212 (451)
T 3pv2_A          147 KLEVGDFVVAIGNPFGLNSFG--NSQSATFGIVSALKRSD----LN---IEGVENFIQTD-----AAINPGNSGGALVNA  212 (451)
T ss_dssp             GCCTTCEEEEEECCCCC-------CCEEEEEEEEEEC-----------------CCEEES-----SCCCGGGTTSEEEET
T ss_pred             cCCCCCEEEEEECCCCccccc--cCCceeEEEEeeccccc----cC---CCCcceEEEEe-----cccCCCCCcCcccCC
Confidence            456799999999  4432111  11222222333222221    11   11123456654     256789999999965


Q ss_pred             eCCeEEEEEEEEecCC-CCCCCCCeEEEeCcchHHHHHhhh
Q psy17330        144 LDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       144 ~~~~~~L~Gi~s~~~~-c~~~~~p~vft~v~~~~~WI~~~i  183 (184)
                      .+   .++||.++... ............+.....++++.+
T Consensus       213 ~G---~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~~l~  250 (451)
T 3pv2_A          213 KG---ELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQII  250 (451)
T ss_dssp             TC---CEEEEEECCC------CCCEEEEEHHHHHHHHHHHH
T ss_pred             CC---eEEEEEeEeecCCCCccceeeeehhHHHHHHHHHHH
Confidence            32   69999987643 222122356667666666666543

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=96.89  E-value=0.015  Score=51.77  Aligned_cols=51  Identities=24%  Similarity=0.410  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCeeEEEe--CCeEEEEEEEEecCCCCCCCCCeEEEeCcchHHHHHhh
Q psy17330        128 GKDSCGGDSGGPLMYPL--DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN  182 (184)
Q Consensus       128 ~~~~c~~d~G~pl~~~~--~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~WI~~~  182 (184)
                      ....-.||||+||+.-.  ++.|.|+|+.+.+..-+..+  ..|.-+..  +|++++
T Consensus       199 ~~~~~~GDSGSPlF~yD~~~kKWvLvGv~s~g~~~g~~~--~~~~~~~~--~f~~~~  251 (1048)
T 1wxr_A          199 PIYGEAGDSGSPLFAFDTVQNKWVLVGVLTAGNGAGGRG--NNWAVIPL--DFIGQK  251 (1048)
T ss_dssp             BCBCCTTCTTCEEEEEETTTTEEEEEEEEEEESSTTCSC--EEEEECCH--HHHHHH
T ss_pred             cCCCCCCCCCCeeeEEEcCCCeEEEEEEecccccCCccc--ceEEEeCH--HHhhhh
Confidence            33456799999999875  88999999998443312211  34444433  566554

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=96.00  E-value=0.1  Score=42.66  Aligned_cols=121  Identities=12%  Similarity=0.008  Sum_probs=63.1

Q ss_pred             CCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEEe
Q psy17330         19 DDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISV   98 (184)
Q Consensus        19 ~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~   98 (184)
                      ...||||||++.+..                  ..++- +.   .......|+.+++.||....     ........+.-
T Consensus       132 ~~~DlAvlkv~~~~~------------------~~~~~-l~---~s~~~~~G~~V~aiG~P~g~-----~~tvt~Givs~  184 (448)
T 1ky9_A          132 PRSDIALIQIQNPKN------------------LTAIK-MA---DSDALRVGDYTVAIGNPFGL-----GETVTSGIVSA  184 (448)
T ss_dssp             TTTTEEEEEESSCCS------------------CCCCC-BC---CGGGCCTTCEEEEEECTTSS-----SCEEEEEEEEE
T ss_pred             CCCCEEEEEecCCCC------------------CceEE-ec---ccccCCCCCEEEEEECCCCC-----CCeEEeEEEee
Confidence            356999999985422                  11222 21   12345678999999985321     11122223333


Q ss_pred             eCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC-CCCCCeEEEeCcchHH
Q psy17330         99 VDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTRVTNYIQ  177 (184)
Q Consensus        99 ~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~-~~~~p~vft~v~~~~~  177 (184)
                      +.+..    ..   ..-....+++.     ...+.|++||||+...+   .++||.+....-. .....+....+.....
T Consensus       185 ~~r~~----~~---~~~~~~~iqtd-----a~i~~GnSGGpl~n~~G---~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~  249 (448)
T 1ky9_A          185 LGRSG----LN---AENYENFIQTD-----AAINRGNAGGALVNLNG---ELIGINTAILAPDGGNIGIGFAIPSNMVKN  249 (448)
T ss_dssp             ESSCC------------CCCCEEES-----CCCTTSCCCSEEECTTS---CEEEEEECSSTTSCCCSSSEEEEEHHHHHH
T ss_pred             ccccc----cC---CCCccCEEEEc-----CCCCCCCCCCeeECCCC---EEEEEEEEeecCCCCccceeeeeecccchh
Confidence            32210    00   11123456654     25678899999997533   7999998754321 1112344455555555


Q ss_pred             HHHh
Q psy17330        178 WIAD  181 (184)
Q Consensus       178 WI~~  181 (184)
                      .+++
T Consensus       250 ~~~~  253 (448)
T 1ky9_A          250 LTSQ  253 (448)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            5543

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=95.18  E-value=0.28  Score=41.00  Aligned_cols=49  Identities=24%  Similarity=0.243  Sum_probs=27.8

Q ss_pred             CCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHHHHHhh
Q psy17330        131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN  182 (184)
Q Consensus       131 ~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~WI~~~  182 (184)
                      .-.|.+||||+...+   .++||.+....-......++...+......+.+.
T Consensus       195 InpGnSGGPLvn~~G---eVIGIntai~~~~~~~gigfAIP~~~v~~vl~~l  243 (539)
T 4fln_A          195 INPGNSGGPAFNDQG---ECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDY  243 (539)
T ss_dssp             CCTTTTTSEEECSSS---CEEEEECCCC-----CCCEEEEEHHHHHHHHHHH
T ss_pred             ecCCCccchhccCCC---cEEEEEEEEecCCCCCcceecccHHHHHHHHHHH
Confidence            345789999996543   7999987643222112235555555555555443

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=92.68  E-value=0.05  Score=39.45  Aligned_cols=42  Identities=26%  Similarity=0.484  Sum_probs=27.8

Q ss_pred             CCCCCCeeEEEeCCeEEEEEEEEecC-----C-CC--CCCCCeEEEeCcchHH
Q psy17330        133 GGDSGGPLMYPLDTKYYIIGVVSYGK-----K-CA--EVGFPGVYTRVTNYIQ  177 (184)
Q Consensus       133 ~~d~G~pl~~~~~~~~~L~Gi~s~~~-----~-c~--~~~~p~vft~v~~~~~  177 (184)
                      +|||||||+.. ++  .++||.|++.     . |.  ....-.+|+.+...++
T Consensus       140 ~GDSGGPl~~~-~g--~~vGI~s~~~~~~~~~~c~~~~~~g~~f~~Pi~~vl~  189 (198)
T 2h5c_A          140 RGDSGGSWITS-AG--QAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPILS  189 (198)
T ss_dssp             TTCTTCEEECT-TC--BEEEEEEEECCCTTSBSTTSCGGGCCEEEEEHHHHHH
T ss_pred             CCcceeEEEee-CC--EEEEEEEeecCccCCCccccccCCceEEEEEHHHHHH
Confidence            68999999942 22  7999999874     3 41  1112467887766543

>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}

Probab=86.47  E-value=1.1  Score=39.91  Aligned_cols=50  Identities=20%  Similarity=0.352  Sum_probs=29.5

Q ss_pred             CCCCCCCCCeeEEE--eCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHHHHHhhh
Q psy17330        130 DSCGGDSGGPLMYP--LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       130 ~~c~~d~G~pl~~~--~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~WI~~~i  183 (184)
                      ..-.||||+||+.-  ..++|.|+|+.+.+.+....  --.|+-+.  .+|+.+++
T Consensus       212 yg~~GDSGSPLFayD~~~~KWvl~Gv~~~~~~~~g~--~n~~~i~~--~~f~~~~~  263 (1011)
T 3syj_A          212 AGSKGDSGSPMFIYDAEKQKWLINGILREGNPFEGK--ENGFQLVR--KSYFDEIF  263 (1011)
T ss_dssp             BCCTTCTTCEEEEEETTTTEEEEEEEECC----------EEEEECC--HHHHHHHH
T ss_pred             CCCCCCCCCcceeeEcCCCeEEEEEEeeccccccCc--ccceEEec--hHHhhhhh
Confidence            34578999999865  66799999999875433321  12343222  36666654

>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, M protease, secreted, transmembrane, virulence; 1.75A {Haemophilus influenzae}

Probab=81.58  E-value=1.3  Score=39.22  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=22.7

Q ss_pred             CCCCCCCCeeEEE--eCCeEEEEEEEEec
Q psy17330        131 SCGGDSGGPLMYP--LDTKYYIIGVVSYG  157 (184)
Q Consensus       131 ~c~~d~G~pl~~~--~~~~~~L~Gi~s~~  157 (184)
                      .-.||||+||+.-  ..++|.|+|+.++.
T Consensus       258 ~~~GDSGSPlF~yD~~~~kWvl~Gvl~~~  286 (989)
T 3h09_A          258 AVLGDSGSPLFVYDREKGKWLFLGSYDFW  286 (989)
T ss_dssp             CCTTCTTCEEEEEETTTTEEEEEEEEEEE
T ss_pred             CCcCCCCCccceeecccceEEEEEEeecc
Confidence            4578999999865  67799999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	7e-28
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	8e-27
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	1e-25
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	4e-25
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	9e-25
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	1e-24
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	3e-24
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	6e-24
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	8e-24
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	1e-23
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	2e-23
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	2e-23
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	2e-23
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	3e-23
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	4e-23
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	8e-23
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	9e-23
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	1e-22
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	2e-22
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	4e-22
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	6e-22
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	8e-22
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	8e-22
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	2e-21
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	6e-21
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	4e-20
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	6e-20
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	1e-19
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	1e-19
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	1e-19
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	2e-19
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	3e-19
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	1e-18
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	1e-18
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	4e-18
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	4e-17
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	4e-17
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	5e-17
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	7e-17
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	8e-17
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	9e-17
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	2e-16
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	3e-16
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	3e-16
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	4e-16
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	6e-16
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	1e-15
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	2e-15
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	5e-15
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	2e-14
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	2e-14
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	4e-14
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	3e-13
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	2e-12
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	5e-12
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	4e-11
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	8e-11
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	4e-10
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	6e-10
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	7e-06

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 7e-28
 Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 2/97 (2%)

Query: 87  LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDT 146
           +   L+  +I +V N +C++     G  I   ++CAG   GGKD+C GDSGGPL    + 
Sbjct: 141 IQNTLQKAKIPLVTNEECQK--RYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNE 198

Query: 147 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
            ++++G+ S+G+ CA+   PGVYT V  Y+ WI +  
Sbjct: 199 VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score = 97.0 bits (240), Expect = 1e-25
 Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 2/105 (1%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G+   GG     L+ V + +V +  CR  +      I ++++CAGV  GGKDSC GDSGG
Sbjct: 134 GTTSEGGNTPDVLQKVTVPLVSDEDCRADY--GADEILDSMICAGVPEGGKDSCQGDSGG 191

Query: 139 PLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           PL        Y+ G+VS+G  CA  G+PGVYT V+ ++ WI  N 
Sbjct: 192 PLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA 236

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.1 bits (235), Expect = 4e-25
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 7/109 (6%)

Query: 76  GCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGD 135
           G   ++  G      L+ +   ++    C    S     I +N++C G L GGKD+C GD
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSSFI---ITDNMVCVGFLEGGKDACQGD 176

Query: 136 SGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           SGGP++        + G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 177 SGGPVVC----NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score = 94.0 bits (232), Expect = 9e-25
 Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 7/109 (6%)

Query: 76  GCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGD 135
           G   +   G     +L+ +   V+   KC     +Y   I  N+ C G L GGKDSC GD
Sbjct: 124 GWGNTASSGADYPDELQCLDAPVLSQAKCEA---SYPGKITSNMFCVGFLEGGKDSCQGD 180

Query: 136 SGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           SGGP++        + GVVS+G  CA+   PGVYT+V NY++WI + I+
Sbjct: 181 SGGPVVC----NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score = 92.3 bits (228), Expect = 3e-24
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 89  PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKY 148
            KL+ + I ++    C     +Y   I   + CAG L GGKDSC GDSGGP++       
Sbjct: 132 NKLQCLNIPILSYSDCNN---SYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVC----NG 184

Query: 149 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
            + GVVS+G  CAE G PGVY +V  +  W+   ++
Sbjct: 185 ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.0 bits (227), Expect = 8e-24
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 76  GCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGD 135
           G     P        L+ V I+++ N  C ++   Y   + + +LCAG + GGKD+C  D
Sbjct: 132 GWGSITPTRWQKPDDLQCVFITLLPNENCAKV---YLQKVTDVMLCAGEMGGGKDTCRDD 188

Query: 136 SGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNI 183
           SGGPL+        + G  SYG   C + G P +YT +  +  WI D +
Sbjct: 189 SGGPLIC----DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 1e-23
 Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 93  HVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIG 152
             Q+ V++N  C +        +    LCAG L+GG DSC GDSGGPL+     KY + G
Sbjct: 155 EAQLPVIENKVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQG 213

Query: 153 VVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           V S+G  CA    PGVY RV+ ++ WI   +
Sbjct: 214 VTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 2e-23
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 8/135 (5%)

Query: 56  CSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIF------S 109
            +LP                          P    L+ V++ +++N  C   +       
Sbjct: 110 VTLPPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTG 169

Query: 110 NYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY 169
           +    + +++LCAG  +  +DSC GDSGGPL+  ++  +   GVVS+G+ CA+   PG+Y
Sbjct: 170 DDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIY 227

Query: 170 TRVTNYIQWIADNIS 184
           TRVT Y+ WI   + 
Sbjct: 228 TRVTYYLDWIHHYVP 242

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.9 bits (224), Expect = 2e-23
 Identities = 34/95 (35%), Positives = 59/95 (62%), Gaps = 3/95 (3%)

Query: 89  PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKY 148
             L+++++ +VD   C +   +   TI  N+ CAG   GG+DSC GDSGGP +  ++   
Sbjct: 141 LVLQYLRVPLVDRATCLR---STKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTS 197

Query: 149 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           ++ G++S+G++CA  G  G+YT+V+ Y+ WI +  
Sbjct: 198 FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKT 232

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 2e-23
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
            G  +  L+  ++ ++ N  C          I   + CAG   GG D+C GDSGGP +  
Sbjct: 140 YGQQAGVLQEARVPIISNDVCNGADFYGN-QIKPKMFCAGYPEGGIDACQGDSGGPFVCE 198

Query: 144 ----LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
                  ++ + G+VS+G  CA    PGVYT+V+++ +WI   I
Sbjct: 199 DSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 242

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.1 bits (222), Expect = 3e-23
 Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 5/130 (3%)

Query: 54  PGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGA 113
           P C     +         + G G L      G  +  L+   + ++ N KC+        
Sbjct: 110 PICLPEENQVFPPGRICSIAGWGALIYQ---GSTADVLQEADVPLLSNEKCQ--QQMPEY 164

Query: 114 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 173
            I EN++CAG  +GG DSC GDSGGPLM   + ++ + GV S+G +CA    PGVY RV 
Sbjct: 165 NITENMVCAGYEAGGVDSCQGDSGGPLMCQENNRWLLAGVTSFGYQCALPNRPGVYARVP 224

Query: 174 NYIQWIADNI 183
            + +WI   +
Sbjct: 225 RFTEWIQSFL 234

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.7 bits (221), Expect = 4e-23
 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 9/109 (8%)

Query: 76  GCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGD 135
           G              L   ++ +    KC +    Y   I E ++CAG  S G D+C GD
Sbjct: 124 GWGTVTSPQENFPNTLNCAEVKIYSQNKCER---AYPGKITEGMVCAGS-SNGADTCQGD 179

Query: 136 SGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNI 183
           SGGPL+        + G+ S+G   C +   PGVYT++  Y  WI   +
Sbjct: 180 SGGPLVC----DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 8e-23
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 89  PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTK 147
             L+  +I V++   C  +       I   ++C G LSGG DSC GDSGGPL     D +
Sbjct: 147 LILQKGEIRVINQTTCENL---LPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGR 203

Query: 148 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
            +  GVVS+G  CA+   PGVYTR+  +  WI +N 
Sbjct: 204 IFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENT 239

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.0 bits (219), Expect = 9e-23
 Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 76  GCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN-ENILCAGVLSGGKDSCGG 134
           G   + P     S  LR V ++V+    C       G     ++++CAG   G KDSC G
Sbjct: 129 GWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKG 188

Query: 135 DSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT-NYIQWIADNI 183
           D+GGPL+     K     +VS G +C     PG+YT +T  Y  WI  N+
Sbjct: 189 DAGGPLIC----KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.6 bits (218), Expect = 1e-22
 Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 75  PGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGG 134
            G   +   G      L+ ++  ++ +  C+     Y   I  N+ CA  L G  DSC G
Sbjct: 119 SGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA---YPGQITSNMFCAYGLEGKGDSCQG 175

Query: 135 DSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           DSGGP++        + G+VS+G  C     PGVYT+V NY+ WI   I+
Sbjct: 176 DSGGPVVC----SGKLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIA 221

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score = 87.8 bits (216), Expect = 2e-22
 Identities = 38/97 (39%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 83  GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMY 142
           GG      L  V + +V    CR  +      I   + CAGV SGGKDSC GDSGGP++ 
Sbjct: 129 GGSSTPVNLLKVTVPIVSRATCRAQYGTS--AITNQMFCAGVSSGGKDSCQGDSGGPIV- 185

Query: 143 PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 179
             D+   +IG VS+G  CA   + GVY  V     +I
Sbjct: 186 --DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.1 bits (214), Expect = 8e-22
 Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 7/132 (5%)

Query: 54  PGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGA 113
             C    G          + G G L +    GP++ +L+     VVD   C Q       
Sbjct: 123 VACLPSEGSLLPQDYPCFVTGWGRLYT---NGPIAAELQQGLQPVVDYATCSQRDWWGT- 178

Query: 114 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCAEVGFPGVYTR 171
           T+ E ++CAG   G   +C GDSGGPL    D ++ + G+VS+G    C     P V+TR
Sbjct: 179 TVKETMVCAGG-DGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTR 237

Query: 172 VTNYIQWIADNI 183
           V+ YI WI   +
Sbjct: 238 VSAYIDWINQKL 249

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.3 bits (212), Expect = 8e-22
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 76  GCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGD 135
           G   + P        L+ V + ++ N  C +    +   + + +LCAG + GG  +C  D
Sbjct: 123 GWGSTTPIKFKYPDDLQCVNLKLLPNEDCDK---AHEMKVTDAMLCAGEMDGGSYTCEHD 179

Query: 136 SGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
           SGGPL+        + G+ S+G + C E   P VYT++  +  WI + ++
Sbjct: 180 SGGPLIC----DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 225

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 85.5 bits (210), Expect = 2e-21
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 8/109 (7%)

Query: 76  GCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGD 135
           G   + P    +S  L+ V I ++ N KC +    Y   + + +LCAG + GGKD+C GD
Sbjct: 130 GWGSTNPSEMVVSHDLQCVNIHLLSNEKCIET---YKDNVTDVMLCAGEMEGGKDTCAGD 186

Query: 136 SGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNI 183
           SGGPL+        + G+ S G   CA+   P +Y ++  +  WI   +
Sbjct: 187 SGGPLIC----DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVM 231

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 6e-21
 Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 24/163 (14%)

Query: 46  ARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCR 105
             LP   G   +L                P              KL   ++ + +  K  
Sbjct: 118 ICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKG 177

Query: 106 QIFSNY------------GATINENILCAGVLSG--GKDSCGGDSGGPLMYPLDTKYYII 151
               +                +    LC G +S     ++C GDSGGPL+    +++  +
Sbjct: 178 SCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQV 237

Query: 152 GVVSYGKKCA----------EVGFPGVYTRVTNYIQWIADNIS 184
           GV+S+G                     +  +   + W+ + + 
Sbjct: 238 GVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ 280

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 37/99 (37%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 86  PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLD 145
                ++   I +V   +C      Y   I +N+LCAG    GKDSC GDSGGPL+    
Sbjct: 129 DFPDTIQCAYIHLVSREECEH---AYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVC--- 182

Query: 146 TKYYIIGVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNI 183
              ++ G+VS+G   C     PGVYT V  Y  WI   I
Sbjct: 183 -GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 220

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (198), Expect = 1e-19
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 66  DLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFS-NYGATINENILCAGV 124
           D+  G +      G        S  LR V+I+++D   C      N+   I  N++CAG 
Sbjct: 113 DVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGS 172

Query: 125 LSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG--KKCAEVGFPGVYTRVT-NYIQWIAD 181
           L GG+DSC GDSG PL+     +    GV S+G   KC +   PGVY  ++  ++ WI  
Sbjct: 173 LRGGRDSCNGDSGSPLLC----EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIM 228

Query: 182 NI 183
            I
Sbjct: 229 TI 230

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (197), Expect = 1e-19
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 76  GCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGD 135
              G     G  S +L+ +++  VD   C+    +    I +N+ CAG  +  +D+C GD
Sbjct: 128 SGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL---SSSFIITQNMFCAGYDTKQEDACQGD 184

Query: 136 SGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           SGGP +      Y++ G+VS+G+ CA  G  G+YT+VT +++WI  ++
Sbjct: 185 SGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (198), Expect = 1e-19
 Identities = 36/93 (38%), Positives = 62/93 (66%), Gaps = 3/93 (3%)

Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYI 150
           L  ++I VV + +C ++ SN    ++EN+LCAG+L   +D+C GDSGGP++      +++
Sbjct: 149 LNFIKIPVVPHNECSEVMSNM---VSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFL 205

Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           +G+VS+G+ C  +   GVYT+V+ Y+ WI  +I
Sbjct: 206 VGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 79.8 bits (195), Expect = 2e-19
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 92  RHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDT-KYYI 150
               +  V +  CR  + N     NE I      +GG D+C GDSGGP+    +  ++  
Sbjct: 129 LKANVPFVSDAACRSAYGN-ELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQ 187

Query: 151 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           +G+VS+G  CA  G+PGVYT V+ +   IA   
Sbjct: 188 VGIVSWGYGCARPGYPGVYTEVSTFASAIASAA 220

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 79.8 bits (195), Expect = 3e-19
 Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 90  KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYY 149
            L+   +  VD   C      +G+T+  +++CAG   G +  C GDSGGPL   ++ +Y 
Sbjct: 144 TLQQAYLPTVDYAICSSSS-YWGSTVKNSMVCAGG-DGVRSGCQGDSGGPLHCLVNGQYA 201

Query: 150 IIGVVSYGKK--CAEVGFPGVYTRVTNYIQWIADNIS 184
           + GV S+  +  C     P V+TRV+ YI WI + I+
Sbjct: 202 VHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIA 238

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.2 bits (191), Expect = 1e-18
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 92  RHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYII 151
           R   + ++ N KC Q       T+NE+ +CAG    G   C GD GGPL+        ++
Sbjct: 136 RVAHLYIMGNEKCSQHHRGKV-TLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVL 194

Query: 152 GVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           GV+  G+ CA    PG++ RV  Y +WI   I
Sbjct: 195 GVIVPGRGCAIPNRPGIFVRVAYYAKWIHKII 226

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.9 bits (190), Expect = 1e-18
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
            G  S  L+ V+++V ++ KC     NY    NE  +CAG     + S  GDSGGPL+  
Sbjct: 134 MGKYSDTLQEVELTVQEDQKCESYLKNYFDKANE--ICAGDPKIKRASFRGDSGGPLVC- 190

Query: 144 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
              K    G+VSYG+       P  +T+V+ ++ WI   +
Sbjct: 191 ---KKVAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKTM 225

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 76.8 bits (187), Expect = 4e-18
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 88  SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DT 146
              L+  Q+ VVD   C +            I   G   G   SC GDSGGPL     + 
Sbjct: 142 PDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGG--DGIISSCNGDSGGPLNCQGANG 199

Query: 147 KYYIIGVVSYGKK--CAEVGFPGVYTRVTNYIQWIADNIS 184
           ++ + G+VS+G    C     P V+TRV+NYI WI   I+
Sbjct: 200 QWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIA 239

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 74.1 bits (180), Expect = 4e-17
 Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 83  GGGPLSPKLRHVQISVVDNPKCRQIFSNYG-ATINENILCAGVLSGGKDSCGGDSGGPLM 141
           G   L   L+   I V+   +C       G A I +N +C    +G   +C GDSGGPL 
Sbjct: 137 GTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLN 196

Query: 142 YPLDTKYYIIGVVS----YGKKCAEVGFPGVYTRVTNYIQWIADN 182
            P D    ++GV S     G       +P VYTRV+ Y+ WI DN
Sbjct: 197 CP-DGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDN 240

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 73.9 bits (180), Expect = 4e-17
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 76  GCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGD 135
           G          +S  LR V + ++ N  C  ++         +       +GGK +C GD
Sbjct: 123 GWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIV-----TDGNICIDSTGGKGTCNGD 177

Query: 136 SGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTRVTNYIQWIADNI 183
           SGGPL Y         G+ S+G     E G+P  +TRVT ++ WI    
Sbjct: 178 SGGPLNY----NGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQT 222

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 73.6 bits (179), Expect = 5e-17
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 91  LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYI 150
           L+ V++ +  N KC +    Y   + E +LCA         C GDSGG L+         
Sbjct: 147 LQCVELRLQSNEKCAR---AYPEKMTEFVLCATHRDDSGSICLGDSGGALIC----DGVF 199

Query: 151 IGVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNI 183
            G+ S+G  +CA+     V+T+V  + +WI + I
Sbjct: 200 QGITSWGYSECADFNDNFVFTKVMPHKKWIKETI 233

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 7e-17
 Identities = 34/84 (40%), Positives = 46/84 (54%)

Query: 100 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK 159
            +   +         I E + CAG   G KDSC GDSGGP        +Y+ G+VS+G+ 
Sbjct: 156 QDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQG 215

Query: 160 CAEVGFPGVYTRVTNYIQWIADNI 183
           CA VG  GVYTRV+ YI+W+   +
Sbjct: 216 CATVGHFGVYTRVSQYIEWLQKLM 239

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 8e-17
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 8/101 (7%)

Query: 85  GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL 144
           G     L+HV + V+D   C +                   S  +DSC GDSGGPL+   
Sbjct: 135 GRRPDSLQHVLLPVLDRATCNR---RTHHDGAITERLMCAESNRRDSCKGDSGGPLVC-- 189

Query: 145 DTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
                + GVV+ G + C     PG+YTRV +Y  WI   ++
Sbjct: 190 --GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA 228

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 9e-17
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 92  RHVQISVVDNPKCRQIFS--NYGATINENILCAGVLSGGKDSCGGDSGGPLMY--PLDTK 147
           R V++ V +   C       N     ++N+ CAG  S  +D+C GDSGG      P   +
Sbjct: 145 RFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDR 204

Query: 148 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           +   G+VS+G  C+     G YT+V NY+ WI   +
Sbjct: 205 WVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 238

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.1 bits (175), Expect = 2e-16
 Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 6/104 (5%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
           GGPL  KL+   +  VD   C Q    +G T+ + ++CAG     +  C GDSGGPL  P
Sbjct: 130 GGPLPDKLQQALLPTVDYEHCSQWD-WWGITVKKTMVCAGG--DTRSGCNGDSGGPLNCP 186

Query: 144 L-DTKYYIIGVVSY--GKKCAEVGFPGVYTRVTNYIQWIADNIS 184
             D  + + GV S+     C  +  P V+TRV+ +I WI + I+
Sbjct: 187 AADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIA 230

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 71.7 bits (174), Expect = 3e-16
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 76  GCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGD 135
           G     P             I+++D+  C+  +    A             GGKD+CGGD
Sbjct: 122 GWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQ--GGKDTCGGD 179

Query: 136 SGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 184
           SGGPL+          G+VSYG   C +   PG+YT V +Y  WI  NI+
Sbjct: 180 SGGPLIC----NGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIA 225

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 71.3 bits (173), Expect = 3e-16
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 85  GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL 144
            P S  LR V++ ++D   C            +  +C G  +  + +  GDSGGPL+   
Sbjct: 135 DPTSYTLREVELRIMDEKACVDYRYY----EYKFQVCVGSPTTLRAAFMGDSGGPLLC-- 188

Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
                  G+VSYG   A    P ++TRV+ Y+ WI   I+
Sbjct: 189 --AGVAHGIVSYGHPDA--KPPAIFTRVSTYVPWINAVIN 224

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 71.4 bits (173), Expect = 4e-16
 Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
           G    GGPLS  L+   +  VD+  C              +   G        C GDSGG
Sbjct: 133 GKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAGGG---ANSGCNGDSGG 189

Query: 139 PLMYPLDTKYYIIGVVSY--GKKCAEVGFPGVYTRVTNYIQWI 179
           PL   ++  YY+ GV S+     C     P V+TRV+ YI W+
Sbjct: 190 PLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWM 232

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 6e-16
 Identities = 46/106 (43%), Positives = 65/106 (61%), Gaps = 6/106 (5%)

Query: 85  GPLSPKLRHVQISVVDNPKCRQIFSN---YGATINENILCAGVLSGGKDSCGGDSGGPLM 141
           G L+  L +V I +VD+ KC   +        ++  N+LCAG+ SGGKDSC GDSGG L+
Sbjct: 135 GFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALV 194

Query: 142 Y--PLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 184
           +      ++++ G+VS+G   C E G  GVYT+V NYI WI + IS
Sbjct: 195 FLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 69.8 bits (169), Expect = 1e-15
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 10/100 (10%)

Query: 84  GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP 143
           GG     L+ +++ V      +Q   +    I+ +I        G+ +C GDSGGPL+  
Sbjct: 131 GGNTPNALQEIELIVHP---QKQCERDQWRVIDSHICTLT--KRGEGACHGDSGGPLVA- 184

Query: 144 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
                  IG+VS+G  CA +G P VYTRV++++ WI  N+
Sbjct: 185 ---NGAQIGIVSFGSPCA-LGEPDVYTRVSSFVSWINANL 220

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (169), Expect = 2e-15
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 88  SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL--- 144
           + +L    +      K  +  ++  A +    +       G DSC GDSGG         
Sbjct: 160 AARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPND 219

Query: 145 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
            TK+Y  G+VS+G +C   G  G+YTRV NY+ WI   +
Sbjct: 220 KTKFYAAGLVSWGPQC---GTYGLYTRVKNYVDWIMKTM 255

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 5e-15
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 92  RHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYII 151
           R VQ+ V  + +C +I   +G+      +C G     K +  GDSGGPL+          
Sbjct: 140 REVQLRVQRDRQCLRI---FGSYDPRRQICVGDRRERKAAFKGDSGGPLLC----NNVAH 192

Query: 152 GVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           G+VSYGK       P V+TRV++++ WI   +
Sbjct: 193 GIVSYGKSSG--VPPEVFTRVSSFLPWIRTTM 222

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (160), Expect = 2e-14
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 93  HVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIG 152
            V+++V ++ KC     +Y  +  E   C G     K S  GDSGGPL+          G
Sbjct: 142 EVKMTVQEDRKCESDLRHYYDSTIEL--CVGDPEIKKTSFKGDSGGPLVC----NKVAQG 195

Query: 153 VVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
           +VSYG+       P   T+V++++ WI   +
Sbjct: 196 IVSYGRNNG--MPPRACTKVSSFVHWIKKTM 224

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (160), Expect = 2e-14
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 10/126 (7%)

Query: 58  LPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINE 117
           LP+      +  G +      G      P S  L+ V++ ++D     Q  S++    + 
Sbjct: 106 LPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDP----QACSHFRDFDHN 161

Query: 118 NILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ 177
             LC G     K +  GDSGGPL+          G+VSYG+  A    P V+TR+++Y  
Sbjct: 162 LQLCVGNPRKTKSAFKGDSGGPLLC----AGVAQGIVSYGRSDA--KPPAVFTRISHYRP 215

Query: 178 WIADNI 183
           WI   +
Sbjct: 216 WINQIL 221

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 4e-14
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 101 NPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK- 159
                   +        + +C  V       C GDSGGPL+        I G+ S+    
Sbjct: 141 QVLQELNVTVVTFFCRPHNICTFVPRRKAGICFGDSGGPLIC----DGIIQGIDSFVIWG 196

Query: 160 CAEVGFPGVYTRVTNYIQWIADNI 183
           CA   FP  +TRV  Y+ WI   +
Sbjct: 197 CATRLFPDFFTRVALYVDWIRSTL 220

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.6 bits (153), Expect = 3e-13
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 89  PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKY 148
            KL+ V + V    KC      +   I    +CAG  S  K+S  GDSGGPL+       
Sbjct: 138 DKLQEVDLEVQSEEKCIA---RFKNYIPFTQICAGDPSKRKNSFSGDSGGPLVC----NG 190

Query: 149 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
              G+VSYG+       P VYTR+++++ WI   +
Sbjct: 191 VAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTM 223

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 61.4 bits (147), Expect = 2e-12
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 88  SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTK 147
           +  L++    V+DN +C Q +      I       G  S GK  C GDSGGP +     K
Sbjct: 135 TVILQYTYNLVIDNDRCAQEYPPG---IIVESTICGDTSDGKSPCFGDSGGPFVL--SDK 189

Query: 148 YYIIGVVSYGKKCA-EVGFPGVYTRVTNYIQWIADNI 183
             +IGVVS+      E G P  ++RVT+Y+ WI  N 
Sbjct: 190 NLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNT 226

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 60.4 bits (145), Expect = 5e-12
 Identities = 18/107 (16%), Positives = 26/107 (24%), Gaps = 2/107 (1%)

Query: 79  GSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 138
                 G ++    +V    + N      F  +G       L       G  +  G SG 
Sbjct: 137 RDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGS 196

Query: 139 PLMYPL-DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 184
           P+  P       + G  S             Y RV           S
Sbjct: 197 PIYSPEKRVLGQLHGGPSSCSATGT-NRSDQYGRVFTSWTGGGAAAS 242

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 4e-11
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 118 NILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYI 176
           + +C  V       C GDSG PL+        I G+ S+ +  CA   +P  +  V  ++
Sbjct: 155 SNVCTLVRGRQAGVCFGDSGSPLVC----NGLIHGIASFVRGGCASGLYPDAFAPVAQFV 210

Query: 177 QWIADNI 183
            WI   I
Sbjct: 211 NWIDSII 217

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 8e-11
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 118 NILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ 177
           N +C GVL+     C GD G PL+     +    GV S+       G P  +TRV  +  
Sbjct: 157 NNVCTGVLTRRGGICNGDGGTPLVC----EGLAHGVASFSLGPCGRG-PDFFTRVALFRD 211

Query: 178 WIADNIS 184
           WI   ++
Sbjct: 212 WIDGVLN 218

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 54.4 bits (129), Expect = 4e-10
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 100 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK 159
           D  +     S +  + +       +     D+  G+SG  ++   D    I+GV + G  
Sbjct: 135 DKMRSTGKVSQWEMSGSVTREDTNLAYYTIDTFSGNSGSAML---DQNQQIVGVHNAGYS 191

Query: 160 CAEV-GFPGVYTRVTNYIQWI 179
              + G P        +I + 
Sbjct: 192 NGTINGGPKATAAFVEFINYA 212

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 53.8 bits (128), Expect = 6e-10
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 117 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 176
            +     ++     S GGDSGG            +G+ S    C+      ++  VT  +
Sbjct: 124 GDGPVYNMVRTTACSAGGDSGGAHF----AGSVALGIHSGSSGCSGTAGSAIHQPVTEAL 179

Query: 177 QW 178
             
Sbjct: 180 SA 181

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 95  QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVV 154
            I+V   P  + + + + +      L    +     + GG+SG P+    + K  +IG+ 
Sbjct: 128 NITVTGYPGDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPV---FNEKNEVIGIH 184

Query: 155 SYGKKCAEVGFPGVYTRVTNYIQWIADNI 183
             G          V+    N   ++  NI
Sbjct: 185 WGG--VPNEFNGAVFI-NENVRNFLKQNI 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	100.0
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	100.0
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	100.0
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	100.0
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	99.98
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.98
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	99.98
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	99.97
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	99.97
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	99.97
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	99.97
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	99.97
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	99.97
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	99.97
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	99.97
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	99.97
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	99.97
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	99.97
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	99.97
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	99.97
d1elva1	259	Complement C1S protease, catalytic domain {Human (	99.97
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.97
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	99.97
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	99.97
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	99.97
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	99.97
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	99.96
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	99.96
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	99.96
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	99.96
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	99.96
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	99.96
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	99.96
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	99.96
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	99.96
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	99.96
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.95
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	99.95
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	99.95
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	99.95
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	99.95
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	99.95
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	99.95
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	99.95
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	99.95
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	99.95
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	99.94
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	99.5
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.48
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	99.07
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	98.49
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	98.37
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	98.02
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	97.29
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	97.2
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	96.71
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	96.57
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	96.55
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	96.46
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	96.31
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	96.16
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	95.65
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	95.62
d1cqqa_	180	3C cysteine protease (picornain 3C) {Human rhinovi	90.92

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-32  Score=207.95  Aligned_cols=158  Identities=33%  Similarity=0.579  Sum_probs=139.2

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.+|++||+|+.   ++|||||||+.++.              ++..+.||| ||...  .....+..+...||+....
T Consensus        79 ~v~~i~~Hp~y~~~~~~~diAll~L~~~~~--------------~~~~~~~i~-l~~~~--~~~~~~~~~~~~g~~~~~~  141 (241)
T d1eaxa_          79 RLKRIISHPFFNDFTFDYDIALLELEKPAE--------------YSSMVRPIC-LPDAS--HVFPAGKAIWVTGWGHTQY  141 (241)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCTT--CCCCTTCEEEEEESSBSST
T ss_pred             EEEEEEECCcccccccCCcccccccCCcee--------------cCcccceee-ccccc--cccccceeEEEeccCCccc
Confidence            4689999999965   67999999999998              999999999 77554  3445678899999998887


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE-eCCeEEEEEEEEecCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~-~~~~~~L~Gi~s~~~~c~~  162 (184)
                      .......|++..+++++.++|++.+.   ..+.++++|++........|.+|+||||++. .+++|+|+||+|++..|+.
T Consensus       142 ~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~c~~~~~~~~~~c~gd~G~pl~~~~~~g~~~L~Gi~s~~~~c~~  218 (241)
T d1eaxa_         142 GGTGALILQKGEIRVINQTTCENLLP---QQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQ  218 (241)
T ss_dssp             TSCBCSBCEEEEEEECCHHHHHHHST---TTCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSC
T ss_pred             cccccccceEEEEEEeCHHHHHHHhC---ccccCccceeccCCCCcccccCcccceeEEEcCCCeEEEEEEEEECCCCCC
Confidence            77777889999999999999999887   5678899999866777889999999999997 4689999999999999988


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|.+||||++|.+||++++.
T Consensus       219 ~~~p~vft~V~~y~~WI~~~~g  240 (241)
T d1eaxa_         219 RNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             TTCCEEEEESGGGHHHHHHHHC
T ss_pred             CCCCEEEEEHHHHHHHHHHHhC
Confidence            8899999999999999999874

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-32  Score=205.40  Aligned_cols=159  Identities=31%  Similarity=0.598  Sum_probs=139.3

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||+|+.   .+|||||||++++.              ++.+++||| ||....  ....+..+.++||+....
T Consensus        74 ~v~~~~~hp~~~~~~~~~diAli~L~~~v~--------------~~~~~~pic-Lp~~~~--~~~~~~~~~~~g~~~~~~  136 (235)
T d1ekbb_          74 LIDQIVINPHYNKRRKNNDIAMMHLEMKVN--------------YTDYIQPIC-LPEENQ--VFPPGRICSIAGWGALIY  136 (235)
T ss_dssp             EEEEEEECTTCBTTTTBSCCEEEEESSCCC--------------CCSSCCCCB-CCCTTC--CCCTTCEEEEEESSBSST
T ss_pred             eeeeeeecccccccCccchhhhhhhcCcee--------------cCCceeeEE-CCCccc--cCCcceEEEEeccccccc
Confidence            3578999999955   56999999999999              999999999 776553  345788999999999888


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+.....++...+.+.+.++|.....  .....+.++|+.......+.|.||+|+||+++.+++|+|+||.|++..|+..
T Consensus       137 ~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~S~g~~~~~~  214 (235)
T d1ekbb_         137 QGSTADVLQEADVPLLSNEKCQQQMP--EYNITENMVCAGYEAGGVDSCQGDSGGPLMCQENNRWLLAGVTSFGYQCALP  214 (235)
T ss_dssp             TSCBCSBCEEEEEEBCCHHHHHHHCT--TSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCT
T ss_pred             CCcccccceeeEEEEecHHHhccccc--ccccCcccEEEEcCCCCcccccCCCCCccEEccCCEEEEEEEEEecCCCCCC
Confidence            77777789999999999999987665  3567889999986677778999999999999999999999999999999988


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|++||||..|++||+++|.
T Consensus       215 ~~p~v~t~v~~y~~WI~~~i~  235 (235)
T d1ekbb_         215 NRPGVYARVPRFTEWIQSFLH  235 (235)
T ss_dssp             TCCEEEEEGGGTHHHHHTTCC
T ss_pred             CCCEEEEEHHHHHHHHHHhhC
Confidence            899999999999999999873

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-32  Score=206.18  Aligned_cols=159  Identities=28%  Similarity=0.498  Sum_probs=139.1

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.+++.||.|+.   ++|||||+|++++.              +.++++||| ++...  ........+.+.||+....
T Consensus        75 ~v~~~~~h~~~~~~~~~~diAll~L~~~v~--------------~~~~~~pi~-~~~~~--~~~~~~~~~~~~G~~~~~~  137 (237)
T d1xx9a_          75 GVQEIIIHDQYKMAESGYDIALLKLETTVN--------------YTDSQRPIC-LPSKG--DRNVIYTDCWVTGWGYRKL  137 (237)
T ss_dssp             EEEEEEECTTCSCTTTSCCCEEEEESSCCC--------------CBTTBCCCB-CCCTT--CTTCCCSCEEEEESCCSST
T ss_pred             EeeEEEEecccccccccceeEEEEeccccc--------------cccccceEE-ecccc--cccccccccEEEEeecccc
Confidence            5788999999965   66999999999999              999999999 65444  3445667889999998777


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .......++...+++++.++|+..+.  ...+.+.++|++........|.+|+||||++..+++|+|+||+|++..|+..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~s~g~~~~~~  215 (237)
T d1xx9a_         138 RDKIQNTLQKAKIPLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQR  215 (237)
T ss_dssp             TCCCCSBCEEEECCEECHHHHHHHTT--TSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEEESSSSCT
T ss_pred             cccCCCccEEEEEEEeCHHHHhhhhc--CCCCCCceEEEecCCCCcccccCCccceeEEecCCEEEEEEEEEeCCCCCCC
Confidence            76677889999999999999988775  3567899999986677778999999999999999999999999999999888


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|++||||++|++||+++|+
T Consensus       216 ~~p~vft~v~~~~~WI~~~~~  236 (237)
T d1xx9a_         216 ERPGVYTNVVEYVDWILEKTQ  236 (237)
T ss_dssp             TCCEEEECGGGGHHHHHHHHC
T ss_pred             CCCEEEEEhHHhHhHHHHHHC
Confidence            899999999999999999986

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=100.00  E-value=2e-32  Score=205.58  Aligned_cols=156  Identities=33%  Similarity=0.585  Sum_probs=137.1

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++++|++||+|+.   ++|||||+|++++.              ++..+.||| ++...    ...+..+...|||....
T Consensus        78 ~v~~i~~h~~y~~~~~~~diAll~l~~~v~--------------~~~~~~~i~-~~~~~----~~~~~~~~~~g~g~~~~  138 (237)
T d2f91a1          78 TVSKIILHENFDYNLLDNDISLLKLSGSLT--------------FNDNVAPIA-LPEQG----HTATGDVIVTGWGTTSE  138 (237)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCTT----CCCCSEEEEEESCCSST
T ss_pred             eEEEEEEccccCCCccccceeeeccccccc--------------cCCceeeee-ccccC----cccccceeeccccccCC
Confidence            4789999999965   56999999999998              999999999 55333    35568899999999887


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+..+..|++..+++++.++|+..+.  ...+.+.++|....+.....|.+|+||||+++.+++|+|+||.|++..|+..
T Consensus       139 ~~~~~~~l~~~~~~~~~~~~C~~~~~--~~~~~~~~~c~~~~~~~~~~~~gdsG~Pl~~~~~~~~~L~Gi~S~g~~c~~~  216 (237)
T d2f91a1         139 GGNTPDVLQKVTVPLVSDEDCRADYG--ADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARP  216 (237)
T ss_dssp             TCCCCSBCEEEEEEEECHHHHHHHHC--TTTSCTTEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEEEEEEEESSSSCT
T ss_pred             CCcCCchheEEEEEEeCHHHHhhhcc--CCcccCceeEeecCCCccccccCCCCCeEEEecCCeEEEEEEEEeCCCCCCC
Confidence            77677889999999999999998876  2457888999986677778999999999999999999999999999999988


Q ss_pred             CCCeEEEeCcchHHHHHhhh
Q psy17330        164 GFPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i  183 (184)
                      +.|.+||||++|++||++++
T Consensus       217 ~~p~v~t~v~~y~~WI~~n~  236 (237)
T d2f91a1         217 GYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             TCCEEEEEGGGSHHHHHHHC
T ss_pred             CCCEEEEEHHHHHHHHHHhC
Confidence            88999999999999999875

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=6.8e-32  Score=201.15  Aligned_cols=152  Identities=30%  Similarity=0.547  Sum_probs=132.1

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||+|+.   .+|||||+|++++.              ++++++||| ||...    ...+..+++.|||.+..
T Consensus        66 ~~~~~~~hp~y~~~~~~~diAll~L~~~v~--------------~~~~~~pic-L~~~~----~~~~~~~~~~g~g~~~~  126 (223)
T d1j16a_          66 NAAKIIKHPNFDRETYNNDIMLIKLSSPVK--------------LNARVATVA-LPSSC----APAGTQCLISGWGNTLS  126 (223)
T ss_dssp             EEEEEEECTTCBTTTTBTCCEEEEESSCCC--------------CBTTBCCCB-CCSSC----CCTTCEEEEEESSCCCS
T ss_pred             eeeeEEecCCCCccccceeEEEEEecCccc--------------cceeEEEEe-cCCcC----CCCCCEEEEEeeeeeeC
Confidence            4568899999965   45999999999999              999999999 77543    35788999999998766


Q ss_pred             CC-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         84 GG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        84 ~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      .+ .....|+...+++++.++|+..+.   ..+.++++|+.........|.+|+|+||+++.    +|+||+|++..|+.
T Consensus       127 ~~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~C~~~~~~~~~~c~gd~g~pl~~~~----~L~Gi~s~~~~~~~  199 (223)
T d1j16a_         127 SGVNEPDLLQCLDAPLLPQADCEASSS---FIITDNMVCVGFLEGGKDACQGDSGGPVVCNG----ELQGIVSWGYGCAL  199 (223)
T ss_dssp             SSCCCCSBCEEEEEEEECHHHHHSSSS---CCCCTTEEEESCTTCSCBCCTTCTTCEEEETT----EEEEEEEECSSSSC
T ss_pred             CCccCcceeeEEEEEEEEhhHhhcccc---ceeCCCceEEecCCCCCcccCCccCCcEEEee----EEEEEEEEccCCCC
Confidence            54 345678999999999999998765   56889999998667777899999999999965    99999999999998


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||+.|++||+++|+
T Consensus       200 ~~~p~vft~v~~~~~WI~~~i~  221 (223)
T d1j16a_         200 PDNPGVYTKVCNYVDWIQDTIA  221 (223)
T ss_dssp             TTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCEEEEEhHHhHHHHHHHHh
Confidence            8899999999999999999984

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=7.8e-32  Score=203.91  Aligned_cols=159  Identities=29%  Similarity=0.506  Sum_probs=136.6

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||.|+.   .+||||++|.+|+.              ++..++||| ||..+  .....+..+.+.||+.+..
T Consensus        87 ~v~~i~~h~~y~~~~~~~diali~l~~pi~--------------~~~~~~pi~-l~~~~--~~~~~~~~~~~~g~~~~~~  149 (251)
T d1pytd_          87 GVDTIFVHEKWNSFLVRNDIALIKLAETVE--------------LGDTIQVAC-LPSEG--SLLPQDYPCFVTGWGRLYT  149 (251)
T ss_dssp             EEEEEEECTTCBTTTTBSCCEEEEESSCCC--------------CCSSCCCCB-CCCTT--CCCCTTCEEEECBCCCSSC
T ss_pred             eEEEEEEeeeecccccCCceeeeecCCCcc--------------cCceeEEEE-eeccc--cCCCCceeEEEecCccccC
Confidence            4789999999965   66999999999998              999999999 66554  3445788999999998887


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC--CC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CA  161 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~--c~  161 (184)
                      .+.....++...+++++.++|.+.+. .....++.++|+. .....+.|.+|+||||+++.+++|+|+||.||+..  |+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~C~~~~~-~~~~~~~~~~c~~-~~~~~~~c~gd~G~Pl~~~~~~~~~L~Gi~S~~~~~~c~  227 (251)
T d1pytd_         150 NGPIAAELQQGLQPVVDYATCSQRDW-WGTTVKETMVCAG-GDGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCN  227 (251)
T ss_dssp             CSCCCSBCBCCEEECBCHHHHTSTTT-TTTTCCTTEEEEC-CSCSSCCCCSCTTCEEEEESSSSEEEEEEEEECCSSCTT
T ss_pred             CCcccceeceeeccccCHHHHhhhhc-ccccccCceEEec-cCCCCccccCCCCCceEEeeCCEEEEEEEEEECCCCCCC
Confidence            77667778888899999999988765 3456788899997 35567899999999999999999999999999764  77


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..+.|.+||||++|++||+++||
T Consensus       228 ~~~~p~vyt~v~~y~~WI~~~i~  250 (251)
T d1pytd_         228 TFKKPTVFTRVSAYIDWINQKLQ  250 (251)
T ss_dssp             BTTBCEEEEEGGGGHHHHHHHTT
T ss_pred             CCCCCeEEEEHHHhHHHHHHhcc
Confidence            77889999999999999999986

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.1e-32  Score=201.71  Aligned_cols=160  Identities=28%  Similarity=0.540  Sum_probs=138.8

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCc-eeccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEF-RLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~-~~~~~~~~~~~~~Gwg~~~   82 (184)
                      .+.++++||+|+.   ++|||||+|++|+.              +++++.|+| ||.... .........+++.||+...
T Consensus        70 ~~~~i~~h~~~~~~~~~~diAll~L~~pv~--------------~~~~v~pi~-l~~~~~~~~~~~~~~~~~~~~~~~~~  134 (233)
T d2p3ub1          70 EVEVVIKHNRFTKETYDFDIAVLRLKTPIT--------------FRMNVAPAC-LPERDWAESTLMTQKTGIVSGFGRTH  134 (233)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCHHHHHHHTTTSSEEEEEESCBSS
T ss_pred             cceeEEEeecccccccccceeeeeccccee--------------ecccccccc-cCCcccccccccccceEEEecCCccc
Confidence            4677899999965   56999999999998              999999999 665443 3455667788899999877


Q ss_pred             CCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      ..+.....++...+++++.+.|...+.   ..+..+++|+.........|.+|+||||+++.+++|+|+||.||+..|+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~C~~~~~---~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~L~Gv~s~g~~c~~  211 (233)
T d2p3ub1         135 EKGRQSTRLKMLEVPYVDRNSCKLSSS---FIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCAR  211 (233)
T ss_dssp             TTSCBCSBCEEEEEEBCCHHHHHHHCS---SCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEEEECSSSSC
T ss_pred             cCCCccccccccccccccchhhhcccC---ceEeecceeeecccccCCCcCCCcccccEEecCCeEEEEEEEEECCCCCC
Confidence            776667778899999999999988876   56678889987667778899999999999999999999999999999998


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||++|++||+++||
T Consensus       212 ~~~p~vyt~v~~y~~WI~~~i~  233 (233)
T d2p3ub1         212 KGKYGIYTKVTAFLKWIDRSMK  233 (233)
T ss_dssp             TTCCEEEEEGGGGHHHHHHHTC
T ss_pred             CCCCEEEEEHHHHHHHHHHHhC
Confidence            8899999999999999999986

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-31  Score=199.50  Aligned_cols=161  Identities=34%  Similarity=0.646  Sum_probs=137.0

Q ss_pred             CceEEEcCCCCC----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          8 DSSLHVIPSISD----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         8 ~~~i~~Hp~y~~----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      +.++++||+|+.    ++|||||||++|+.              +++++.|+| +|..........+......||+....
T Consensus        70 v~~i~~hp~y~~~~~~~~DiAll~L~~~~~--------------~~~~v~pic-~~~~~~~~~~~~~~~~~~~g~~~~~~  134 (242)
T d1q3xa1          70 SEAVFIHEGYTHDAGFDNDIALIKLNNKVV--------------INSNITPIC-LPRKEAESFMRTDDIGTASGWGLTQR  134 (242)
T ss_dssp             EEEEEECTTCCTTSCCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCGGGGGGSSTTCEEEEEESSCCTT
T ss_pred             eeeeEEeeccccccccCccccccccCCCcc--------------ccccEEEEe-ccccccccccccceeeeeeecccccc
Confidence            568999999963    56999999999998              999999999 77766666677788889999988665


Q ss_pred             CCCCCcCceEEEEEeeCccccccccccc---CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE--eCCeEEEEEEEEecC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNY---GATINENILCAGVLSGGKDSCGGDSGGPLMYP--LDTKYYIIGVVSYGK  158 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~---~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~--~~~~~~L~Gi~s~~~  158 (184)
                      +. .+..++...+++++.++|++.+...   ...+.+.++|+.........|.+|+||||++.  .+++|+|+||+||+.
T Consensus       135 ~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~~~~~~~l~Gi~S~g~  213 (242)
T d1q3xa1         135 GF-LARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGS  213 (242)
T ss_dssp             SS-CCSBCEEEEEEEECHHHHHHHTSSTTSCTTCSCTTEEEECCSSCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEECC
T ss_pred             Cc-cccceeeeeccccCHHHHHhhhhcccccCceeccceeeeeccCCCccccccccccceEEeeCCCCeEEEEEEEEeCC
Confidence            54 5678999999999999999887642   24667889999866777789999999999997  457999999999986


Q ss_pred             -CCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        159 -KCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       159 -~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                       .|+..+.|.+||||+.|++||+++|+
T Consensus       214 ~~c~~~~~p~vft~v~~~~~WI~~~v~  240 (242)
T d1q3xa1         214 MNCGEAGQYGVYTKVINYIPWIENIIS  240 (242)
T ss_dssp             SSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEHHHhHHHHHHHHH
Confidence             48877889999999999999999874

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.3e-31  Score=197.52  Aligned_cols=158  Identities=28%  Similarity=0.497  Sum_probs=134.3

Q ss_pred             CCCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          6 GPDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         6 ~~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      ..+.+++.||.|+.   .+|||||+|++++.              ++.+++|+| +|....  ....+..+.++|||.+.
T Consensus        67 ~~~~~i~~hp~y~~~~~~~diAll~l~~~~~--------------~~~~~~~i~-l~~~~~--~~~~~~~~~~~g~g~~~  129 (232)
T d1orfa_          67 MLVKKEFPYPCYDPATREGDLKLLQLTEKAK--------------INKYVTILH-LPKKGD--DVKPGTMCQVAGWGRTH  129 (232)
T ss_dssp             ECEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CSSSSCCCC-CCSSCC--CCCTTCEEEEEESSCSS
T ss_pred             ceEEEEEecccccccccCcceeEeeecccee--------------eeeeEeeee-eccccc--ccccCceeeeccccccC
Confidence            35678999999955   66999999999998              999999999 775543  45678999999999988


Q ss_pred             CCCCCCcCceEEEEEeeCcccccccccc-cCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC--
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSN-YGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--  159 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~--  159 (184)
                      ..+..+..|+...+++++.++|++.+.. ....++++++|+.......+.|.+|+||||+++.    +|+||.||+..  
T Consensus       130 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~Pl~~~~----~l~GI~S~g~~~~  205 (232)
T d1orfa_         130 NSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEG----VFRGVTSFGLENK  205 (232)
T ss_dssp             SSSCCCSBCEEEEEEEECHHHHTSTTTTTTTTCCCTTEEEEECSSCCCBCCTTCTTCEEEETT----EEEEEEEECCTTC
T ss_pred             CcccCChhheEEEeecCCHHHHhhhhhcccCccccCceEEeccCCCCcccccccCCCeEEEcC----EEEEEEEEECCCC
Confidence            7777778899999999999999876542 2356789999998767778899999999999965    99999999754  


Q ss_pred             CCCCCCCeEEEeCc-chHHHHHhhhC
Q psy17330        160 CAEVGFPGVYTRVT-NYIQWIADNIS  184 (184)
Q Consensus       160 c~~~~~p~vft~v~-~~~~WI~~~i~  184 (184)
                      |+..+.|++||||+ .|++||+++|+
T Consensus       206 c~~~~~p~vyt~Vs~~y~~WI~~~i~  231 (232)
T d1orfa_         206 CGDPRGPGVYILLSKKHLNWIIMTIK  231 (232)
T ss_dssp             TTCTTSCEEEEECCHHHHHHHHHHHC
T ss_pred             CCCCCCCcEEEEeeHHHHHHHHHHhC
Confidence            77777899999997 79999999986

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=99.97  E-value=3.3e-31  Score=197.17  Aligned_cols=152  Identities=32%  Similarity=0.580  Sum_probs=133.0

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ...+++.||.|..   ++||||++|++|+.              +++.+.||| ||..    ....+..+.+.|||.+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~diALl~l~~~v~--------------~~~~~~pic-l~~~----~~~~~~~~~~~g~~~~~~  126 (222)
T d1hj8a_          66 SSSRVIRHPNYSSYNIDNDIMLIKLSKPAT--------------LNTYVQPVA-LPTS----CAPAGTMCTVSGWGNTMS  126 (222)
T ss_dssp             EEEEEEECTTCBTTTTBSCCEEEEESSCCC--------------CSSSCCCCB-CCSS----CCCTTCEEEEEESSCCCC
T ss_pred             cceEEEecccccccccCCcEEEEeccccee--------------eeceeEEEE-CCCc----CCCCCceEEEEecccccc
Confidence            3457788998855   56999999999999              999999999 7743    345688999999999877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .......|+...+++++.++|+..+.   ..+++.++|+++.....+.|.+|+||||+++.    +|+||.|++..|+..
T Consensus       127 ~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~C~~~~~~~~~~c~gdsGgPl~~~~----~l~Gi~S~g~~~~~~  199 (222)
T d1hj8a_         127 STADSNKLQCLNIPILSYSDCNNSYP---GMITNAMFCAGYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEP  199 (222)
T ss_dssp             SSCCTTBCEEEEEEBCCHHHHHHHST---TCCCTTEEEESCTTSSCBCCTTCTTCEEEETT----EEEEEEEECSSSSCT
T ss_pred             ccccccccEEEEEEEeCHHHHhhhcc---cccccceEEEccCCCCcccccCCcccEEEECC----EEEEEEEEecCCCCC
Confidence            77677889999999999999998876   66889999998767777899999999999964    899999999999988


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|.+||||+.|++||+++|+
T Consensus       200 ~~p~v~t~v~~y~~WI~~~i~  220 (222)
T d1hj8a_         200 GNPGVYAKVCIFNDWLTSTMA  220 (222)
T ss_dssp             TCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCEEEEEHHHHHHHHHHHHH
Confidence            899999999999999999984

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.7e-31  Score=198.11  Aligned_cols=158  Identities=27%  Similarity=0.494  Sum_probs=132.8

Q ss_pred             CCCceEEEcCCCCC------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeec
Q psy17330          6 GPDSSLHVIPSISD------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLG   79 (184)
Q Consensus         6 ~~~~~i~~Hp~y~~------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg   79 (184)
                      ..+.+|++||+|+.      .+|||||||++|+.              +++++.||| +|...  .....+..+++.|||
T Consensus        72 ~~v~~i~vhp~y~~~~~~~~~~DiAll~L~~pi~--------------~~~~v~pi~-l~~~~--~~~~~~~~~~~~g~g  134 (240)
T d2qy0b1          72 HPIRRVSVHPDYRQDESYNFEGDIALLELENSVT--------------LGPNLLPIC-LPDND--TFYDLGLMGYVSGFG  134 (240)
T ss_dssp             CCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCSG--GGGCTTCEEEEEECC
T ss_pred             EEEEEEEeccccccccccccCCCceEEecCCccc--------------cccccceEE-ecccc--cccccCceeeecccc
Confidence            46789999999954      45999999999999              999999999 77654  344568899999999


Q ss_pred             ccCCCCCCCcCceEEEEEeeCcccccccccccC--CCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeC--CeEEEEEEEE
Q psy17330         80 SVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYG--ATINENILCAGVLSGGKDSCGGDSGGPLMYPLD--TKYYIIGVVS  155 (184)
Q Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~--~~~~L~Gi~s  155 (184)
                      .....  .+..++...+.+++.++|+..+....  ..+.++++|+.........|.+|+|+||++..+  ++|+|+||.|
T Consensus       135 ~~~~~--~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~pl~~~~~~~~~~~l~Gi~S  212 (240)
T d2qy0b1         135 VMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVS  212 (240)
T ss_dssp             CCSSS--CCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEE
T ss_pred             ccccc--ccccceEEEEEEcCHHHHHHHhhccccCCceecceEEeccCCccceeeccccccceEEEeCCCCeEEEEEEEE
Confidence            86643  35677889999999999998775422  356889999986677778999999999999844  5899999999


Q ss_pred             ecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        156 YGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       156 ~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      |+.+|+..  |++||||++|++||+++||
T Consensus       213 ~g~~c~~~--p~vft~v~~~~~WI~~~i~  239 (240)
T d2qy0b1         213 WGIGCSRG--YGFYTKVLNYVDWIKKEME  239 (240)
T ss_dssp             ECSSSSSS--CEEEEEGGGGHHHHHHHTT
T ss_pred             ECCCCCCC--CeEEEEHHHHHHHHHHHhc
Confidence            99888753  8999999999999999986

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-31  Score=199.55  Aligned_cols=160  Identities=28%  Similarity=0.503  Sum_probs=138.2

Q ss_pred             CCceEEEcCCCCC-----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSISD-----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y~~-----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~   81 (184)
                      .+.++++||+|+.     .+|||||||++|+.              ++..+.|+| +|..........+..+...||+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~diAllkL~~~~~--------------~~~~~~p~~-l~~~~~~~~~~~~~~~~~~g~~~~  133 (235)
T d1rfna_          69 NVIRIIPHHNYNAAINKYNHDIALLELDEPLV--------------LNSYVTPIC-IADKEYTNIFLKFGSGYVSGWGRV  133 (235)
T ss_dssp             EEEEEEECTTCBTTTBSSTTCCEEEEESSCCC--------------CBTTBCCCB-CCCHHHHHHHHTTSEEEEEESCBS
T ss_pred             eeeEEeeccCCCCCcCccCceEEEEEeCCCcc--------------CCCccceee-eccccccccccccceEEEeccccc
Confidence            3568999999954     46999999999998              999999999 775554444557788899999988


Q ss_pred             CCCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC
Q psy17330         82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA  161 (184)
Q Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~  161 (184)
                      .........|+.+.+++++.+.|...+.   ..+.+..+|+.......+.|.+|+||||+++.+++|+|+||.|++..|+
T Consensus       134 ~~~~~~~~~l~~~~~~~~~~~~c~~~~~---~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~l~Gi~s~g~~~~  210 (235)
T d1rfna_         134 FHKGRSALVLQYLRVPLVDRATCLRSTK---FTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECA  210 (235)
T ss_dssp             STTSCBCSBCEEEEEEBCCHHHHHHHCS---SCCCTTEEEESCSSCSCBCCTTCTTCEEEEESSSCEEEEEEEEEESSSS
T ss_pred             cccccccCcceEEEEecccccccccccC---ceecCCeeEeecCCCCccccCCCCCceeEEecCCeEEEEEEEEeCCCCC
Confidence            7776667789999999999999988776   5567777887656777789999999999999999999999999999999


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..+.|.+||||++|++||+++|+
T Consensus       211 ~~~~p~vyt~v~~~~~WI~~~~~  233 (235)
T d1rfna_         211 MKGKYGIYTKVSRYVNWIKEKTK  233 (235)
T ss_dssp             CTTCCEEEEEGGGTHHHHHHHHC
T ss_pred             CCCCCEEEEEHHHHHHHHHHHhc
Confidence            88899999999999999999986

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=5.1e-31  Score=197.24  Aligned_cols=159  Identities=30%  Similarity=0.524  Sum_probs=135.1

Q ss_pred             CCCceEEEcCCCCC-----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecc
Q psy17330          6 GPDSSLHVIPSISD-----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGS   80 (184)
Q Consensus         6 ~~~~~i~~Hp~y~~-----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~   80 (184)
                      ..+.+|++||+|+.     ++|||||+|.+++.              ++.+++||| +|...  .....+..+++.||+.
T Consensus        64 ~~v~~i~~hp~~~~~~~~~~~diAll~l~~~~~--------------~~~~~~pic-~~~~~--~~~~~~~~~~~~g~~~  126 (232)
T d1fona_          64 INAGDLFVHPLWNSNCVACGNDIALVKLSRSAQ--------------LGDKVQLAN-LPPAG--DILPNEAPCYISGWGR  126 (232)
T ss_dssp             ECTTSEEECTTCCTTCGGGCCCCEEEECSSCCC--------------CTTSCCCCB-CCCTT--CCCCTTCCCEEEECTT
T ss_pred             ceeEEEEEccCccccccccccceeeeecccceE--------------Eeecceeee-cCccc--ccCCCCceeEeecccc
Confidence            36889999999965     47999999999999              999999999 66444  3445678899999999


Q ss_pred             cCCCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE-eCCeEEEEEEEEecCC
Q psy17330         81 VPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKK  159 (184)
Q Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~-~~~~~~L~Gi~s~~~~  159 (184)
                      ....+.....++...+++++.+.|.+... ....+++.++|+.  ......|.+|+||||++. .+++|+|+||.|++..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~c~~--~~~~~~~~gdsGgpl~~~~~~~~~~L~Gi~s~~~~  203 (232)
T d1fona_         127 LYTGGPLPDKLQQALLPTVDYEHCSQWDW-WGITVKKTMVCAG--GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSA  203 (232)
T ss_dssp             CCCSSSCCSBCEEEECCEECHHHHTSTTT-TGGGCCTTEEEEC--CSSSCSTTSCTTCEEEEECSSSCEEEEEEEEECCT
T ss_pred             ccCCCCCCCcceEEEEEEEcHHHhhhhhc-cCceeeeceeeec--cccccccccCCCCceEEEccCCCEEEEEEEEEcCC
Confidence            88777778899999999999999988654 3356788999997  566678999999999987 5689999999999764


Q ss_pred             --CCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        160 --CAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       160 --c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                        |...+.|++||||++|++||+++|+
T Consensus       204 ~~c~~~~~p~vyt~V~~y~~WI~~~i~  230 (232)
T d1fona_         204 FGCNTIKKPTVFTRVSAFIDWIDETIA  230 (232)
T ss_dssp             TCSSBTTBCEEEEEGGGSHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEHHHHHHHHHHHHH
Confidence              7666789999999999999999984

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.8e-31  Score=198.17  Aligned_cols=159  Identities=30%  Similarity=0.541  Sum_probs=132.7

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.+|++||+|..   ++|||||||.+|+.              ++++++|+| ||...  .....+..+.+.+||....
T Consensus        73 ~i~~i~~hp~~~~~~~~~diAli~L~~~~~--------------~~~~v~~~~-l~~~~--~~~~~~~~~~~~~~g~~~~  135 (243)
T d2fpza1          73 PVSRIIVHPQFYTAQIGADIALLELEEPVK--------------VSSHVHTVT-LPPAS--ETFPPGMPCWVTGWGDVDN  135 (243)
T ss_dssp             EEEEEEECTTCSCTTTSCCCEEEEESSCCC--------------CCSSSCCCB-CCCTT--CCCCTTCEEEEEESSCSBT
T ss_pred             eeeeeeccccccccccccchhhhcccCccc--------------cceeEEEee-cCchh--hccCCCceeEEEecccccC
Confidence            6678999999955   66999999999998              999999999 66544  3445678889999997765


Q ss_pred             CCC--CCcCceEEEEEeeCccccccccccc------CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEE
Q psy17330         84 GGP--LSPKLRHVQISVVDNPKCRQIFSNY------GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVS  155 (184)
Q Consensus        84 ~~~--~~~~l~~~~~~~~~~~~C~~~~~~~------~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s  155 (184)
                      ...  ....|+...+++++.++|++.+...      .......++|..  ......|.+|+||||+++.+++|+|+||.|
T Consensus       136 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~gdsGgpl~~~~~~~~~L~Gi~s  213 (243)
T d2fpza1         136 DERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKVNGTWLQAGVVS  213 (243)
T ss_dssp             TBCCCTTCBCEEEEEEEECHHHHHHHHHTTBCSCTTSCSSCTTEEEEC--CSSSBCCTTCTTCEEEEEETTEEEEEEEEE
T ss_pred             CCcCCCCcEeEEEEEeecCHHHhhhhhhcccccCCccceeeeeeEecC--CCCCCCccCCCCCeEEEeeCCEEEEEEEEE
Confidence            542  3557889999999999998876521      123455666765  677789999999999999999999999999


Q ss_pred             ecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        156 YGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       156 ~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ++..|+..+.|.+||||+.|++||+++||
T Consensus       214 ~~~~~~~~~~p~v~t~v~~y~~WI~~~i~  242 (243)
T d2fpza1         214 WGEGCAQPNRPGIYTRVTYYLDWIHHYVP  242 (243)
T ss_dssp             ECSSSSBTTBCEEEEEGGGGHHHHTTTSC
T ss_pred             ECCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            99999888889999999999999999986

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-30  Score=196.81  Aligned_cols=160  Identities=28%  Similarity=0.531  Sum_probs=135.8

Q ss_pred             CCceEEEcCCC------CC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEe
Q psy17330          7 PDSSLHVIPSI------SD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGC   77 (184)
Q Consensus         7 ~~~~i~~Hp~y------~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~G   77 (184)
                      .+.++++||.+      +.   .+|||||||++++.              +++++.|+| |+...  .....+..+.+.|
T Consensus        71 ~v~~~~~h~~~~~~~~~~~~~~~~DiAll~L~~~v~--------------~~~~~~p~~-l~~~~--~~~~~~~~~~~~G  133 (255)
T d1z8ga1          71 GVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLP--------------LTEYIQPVC-LPAAG--QALVDGKICTVTG  133 (255)
T ss_dssp             CEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCC--------------CCSSCCCCB-CCCTT--CCCCTTCEEEEEE
T ss_pred             EEEEEEEEeeeccccccccCCccccEEEEecCCccc--------------cCcccccce-ecccC--cccCCCcEEEeec
Confidence            46788999985      22   56999999999998              999999999 66544  2355688999999


Q ss_pred             ecccCCCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEe----CCeEEEEEE
Q psy17330         78 LGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL----DTKYYIIGV  153 (184)
Q Consensus        78 wg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~----~~~~~L~Gi  153 (184)
                      |+.....+.....++...+++++.+.|+..+. ....+.+.++|+.........|.+|+||||++..    .++|+|+||
T Consensus       134 ~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~-~~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~~~~~~~~~~l~Gi  212 (255)
T d1z8ga1         134 WGNTQYYGQQAGVLQEARVPIISNDVCNGADF-YGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGI  212 (255)
T ss_dssp             SSBSSTTSCBCSBCEEEEEEEECHHHHTSTTT-TTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEE
T ss_pred             cccccCCCcccceeEEEEEEEeCHHHhhhhhc-cCccccCcceEEecCCCCcccccCccccceEEecCCCCCCcEEEEEE
Confidence            99887777777889999999999999987765 2356677888877566777899999999999984    568999999


Q ss_pred             EEecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        154 VSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       154 ~s~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +||+.+|+....|++||||+.|++||+++|+
T Consensus       213 ~S~g~~c~~~~~p~vft~V~~y~~WI~~~i~  243 (255)
T d1z8ga1         213 VSWGTGCALAQKPGVYTKVSDFREWIFQAIK  243 (255)
T ss_dssp             EEEBSSSSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             EEECCCCCCCCCCEEEEEHHHhHHHHHHHHH
Confidence            9999999998899999999999999999874

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.8e-30  Score=193.74  Aligned_cols=159  Identities=25%  Similarity=0.364  Sum_probs=128.5

Q ss_pred             CCceEEEcCCCC---CCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSIS---DDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~---~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.+++.|+.|.   ..+|||||||++|+.              ++++++||| ||...  .....+..+.+.||+....
T Consensus        66 ~~~~~~~~~~~~~~~~~~DIAll~L~~~v~--------------~~~~v~pic-l~~~~--~~~~~~~~~~~~g~~~~~~  128 (234)
T d1si5h_          66 KCKQVLNVSQLVYGPEGSDLVLMKLARPAV--------------LDDFVSTID-LPNYG--STIPEKTSCSVYGWGYTGL  128 (234)
T ss_dssp             TTCEEEEEEEEEECSSTTCEEEEEESSCCC--------------CSSSCCCCB-CCCTT--CCCCTTCEEEEEESSCCCC
T ss_pred             eeEEEEeeccccCCCcccceEEEeeccCcc--------------ccccccccc-ccccc--ccCCcceeEEEeccccccc
Confidence            455667777662   256999999999998              999999999 77554  3445677788888876654


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .. ....|+...+.+++.+.|...+. ....++++++|+.......+.|.||+||||+++.+++|+|+||.|++..|+..
T Consensus       129 ~~-~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~s~g~~c~~~  206 (234)
T d1si5h_         129 IN-YDGLLRVAHLYIMGNEKCSQHHR-GKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIP  206 (234)
T ss_dssp             SS-CCCBCEEEEEEEECGGGTCC--------CCTTEEEEECSSSCCBCCTTCTTCEEEEECSSSEEEEEEECSCSCSSCT
T ss_pred             cc-ccceeEEEEeeccchhHhhhhhc-cccccCCccEEEccCCcCCCCCcCccccceEEecCCeEEEEEEEEeCCCCCCC
Confidence            43 46678999999999999988765 33567899999986667778999999999999999999999999999999888


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|.+||||+.|++||+++|+
T Consensus       207 ~~p~vyt~i~~~~~WI~~~i~  227 (234)
T d1si5h_         207 NRPGIFVRVAYYAKWIHKIIL  227 (234)
T ss_dssp             TCCEEEEEGGGGHHHHHHHHS
T ss_pred             CCCEEEEEHHHHHHHHHHHhh
Confidence            899999999999999999985

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-30  Score=194.20  Aligned_cols=161  Identities=31%  Similarity=0.570  Sum_probs=134.1

Q ss_pred             CCCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCce--eccCCCCeeeeEeecc
Q psy17330          6 GPDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFR--LDLSSGGLRGPGCLGS   80 (184)
Q Consensus         6 ~~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~--~~~~~~~~~~~~Gwg~   80 (184)
                      .++.++++||.|..   .+|||||||++|+.              ++.+|+|+| ||.....  .....+..+.+.|||.
T Consensus        69 ~~v~~i~~~~~~~~~~~~~DiAli~L~~~v~--------------~~~~v~pic-L~~~~~~~~~~~~~~~~~~~~g~g~  133 (240)
T d1autc_          69 LDIKEVFVHPNYSKSTTDNDIALLHLAQPAT--------------LSQTIVPIC-LPDSGLAERELNQAGQETLVTGWGY  133 (240)
T ss_dssp             EEEEEEEECTTCBTTTTBTCCEEEEESSCCC--------------CBTTBCCCB-CCCHHHHHHTTTSTTCEEEEEECCC
T ss_pred             eeeeccccceeeeccccccceeEEEeCCccc--------------CCcccccce-eccCcccccccccCCCeEEEEeecc
Confidence            34678999999955   56999999999999              999999999 7755432  3346778999999997


Q ss_pred             cCCCCC-----CCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEE
Q psy17330         81 VPGGGP-----LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVS  155 (184)
Q Consensus        81 ~~~~~~-----~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s  155 (184)
                      ......     ....+....+++++.+.|...+.   ....+..+|........+.|.||+|+||+++.+++|+|+||.|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~gd~G~pl~~~~~~~~~l~Gi~s  210 (240)
T d1autc_         134 HSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS---NMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVS  210 (240)
T ss_dssp             CCSCCSCCCSSCSSBCEEEEEEEECHHHHHHHCS---SCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEE
T ss_pred             ccCCCcccccccceeeecceeeEEeehhhhhhcc---cccccceeeeccccccCCCcCCccCceeEEcCCCCEEEEEEEE
Confidence            664432     24457788899999999988775   4556677777656777789999999999999999999999999


Q ss_pred             ecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        156 YGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       156 ~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ++..|+..+.|++||||+.|++||+++||
T Consensus       211 ~g~~c~~~~~p~vftrv~~y~~WI~~~i~  239 (240)
T d1autc_         211 WGEGCGLLHNYGVYTKVSRYLDWIHGHIR  239 (240)
T ss_dssp             ECSSSSCTTCCEEEECGGGTHHHHHHHHC
T ss_pred             eCCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            99999887889999999999999999986

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=2.1e-30  Score=193.30  Aligned_cols=154  Identities=25%  Similarity=0.448  Sum_probs=131.8

Q ss_pred             CCCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          6 GPDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         6 ~~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      .++.++++||+|+.   ++||||++|++++.              ++.++.||| +|...  .....+..++..|||...
T Consensus        70 ~~v~~i~~~~~~~~~~~~~diall~l~~~i~--------------~~~~v~pic-l~~~~--~~~~~~~~~~~~g~g~~~  132 (227)
T d1fi8a_          70 IPVVKIIPHPAYNSKTISNDIMLLKLKSKAK--------------RSSAVKPLN-LPRRN--VKVKPGDVCYVAGWGKLG  132 (227)
T ss_dssp             EEEEEEEECTTCBTTTTBSCCEEEEESSCCC--------------CCSSCCCCC-CCCTT--CCCCTTCEEEEEESCBSS
T ss_pred             EEEEEEEecccccCccccchhhhhhccCcee--------------eeeeEEEEE-ecccC--cccCCCCEEEEEeecccc
Confidence            35678999999965   66999999999999              999999999 77655  345678899999999988


Q ss_pred             CCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      ........++...+++++.++|...+.  ........+|+.........|.||+||||+++.    +|+||+|++..|+ 
T Consensus       133 ~~~~~~~~l~~~~~~~~~~~~c~~~~~--~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~----~l~Gi~S~g~~~~-  205 (227)
T d1fi8a_         133 PMGKYSDTLQEVELTVQEDQKCESYLK--NYFDKANEICAGDPKIKRASFRGDSGGPLVCKK----VAAGIVSYGQNDG-  205 (227)
T ss_dssp             TTCCBCSBCEEEEEEBCCHHHHHHHTT--TTCCTTTEEEESCTTSCCBCCTTCTTSEEEETT----EEEEEEEEEETTC-
T ss_pred             CCCCCCceeeEEEEEEEEchhhhhhhh--cccccceeeeeeeccccCCCcCCCcCCEEEECC----EEEEEEEEcCCCC-
Confidence            776667889999999999999998775  245567788887667778899999999999954    9999999998886 


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                       +.|.+||||+.|++||+++|+
T Consensus       206 -~~p~vyt~v~~y~~WI~~~i~  226 (227)
T d1fi8a_         206 -STPRAFTKVSTFLSWIKKTMK  226 (227)
T ss_dssp             -CSCEEEEEGGGGHHHHHHHHC
T ss_pred             -CCCeEEEEHHHHHHHHHHHHc
Confidence             459999999999999999986

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.3e-30  Score=190.45  Aligned_cols=151  Identities=30%  Similarity=0.502  Sum_probs=128.7

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||+|+.   .+|||||+|+.++.              +++++.|+| ||..    ....+..+.++|||....
T Consensus        67 ~~~~~~~~p~y~~~~~~~diAll~l~~~~~--------------~~~~v~pi~-l~~~----~~~~~~~~~~~Gwg~~~~  127 (221)
T d1lo6a_          67 SVVRAVIHPDYDAASHDQDIMLLRLARPAK--------------LSELIQPLP-LERD----CSANTTSCHILGWGKTAD  127 (221)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CBTTBCCCC-BCCC----TTCCCCEEEEEESSCCTT
T ss_pred             eccccccCCCcccccccceeEEeecccccc--------------eeeeEEecc-cccc----CCcccceEEEEecccccC
Confidence            3567899999955   66999999999998              999999999 6643    346788999999998766


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC-CCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~-~c~~  162 (184)
                      .+ ....++...+++++.++|++.+.   ....++++|..........|.+|+||||+++.    +|+||.||+. +|+.
T Consensus       128 ~~-~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~~~~~~~~~~~~c~gd~G~Pl~~~~----~l~Gi~S~g~~~c~~  199 (221)
T d1lo6a_         128 GD-FPDTIQCAYIHLVSREECEHAYP---GQITQNMLCAGDEKYGKDSCQGDSGGPLVCGD----HLRGLVSWGNIPCGS  199 (221)
T ss_dssp             SS-CCSBCEEEEEEEECHHHHHHHST---TTCCTTEEEEECTTTCCBCCTTTTTCEEEETT----EEEEEEEECCSSCCC
T ss_pred             CC-CCccceEEEEEEecHHHHHHHcC---CCccCCceeeeccccCCCCccCCCCCcEEECC----EEEEEEEEccCCCCC
Confidence            53 56789999999999999999886   45666677766567777889999999999976    8999999987 4887


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|.+||||+.|++||+++||
T Consensus       200 ~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1lo6a_         200 KEKPGVYTNVCRYTNWIQKTIQ  221 (221)
T ss_dssp             SSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCeEEEEHHHHHHHHHHHhC
Confidence            7889999999999999999987

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-30  Score=191.80  Aligned_cols=152  Identities=28%  Similarity=0.453  Sum_probs=130.7

Q ss_pred             CCCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          6 GPDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         6 ~~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      .++.++++||.|..   ++||||++|..++.              +++++.|+| ||...  .....+..+...|||...
T Consensus        69 ~~v~~i~~~~~~~~~~~~~diaL~~l~~~~~--------------~~~~~~pi~-l~~~~--~~~~~~~~~~~~g~g~~~  131 (224)
T d1t32a1          69 ITARRAIRHPQYNQRTIQNDIMLLQLSRRVR--------------RNRNVNPVA-LPRAQ--EGLRPGTLCTVAGWGRVS  131 (224)
T ss_dssp             EEEEEEEECTTCBTTTTBTCCEEEEESSCCC--------------CBTTBCCCC-CCCTT--CCCCTTCEEEEEESCCSS
T ss_pred             ecceeEEEeecccccccccceeEEeeccccc--------------cCcccCccc-ccccc--ccCCCCCEEEEecccccc
Confidence            35689999999955   56999999999998              999999999 77655  345678899999999766


Q ss_pred             CCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      ... ....++++.+++++.++|++.+.   ..+.++++|+.......+.|.+|+||||+++.    +|+||.|++..|+.
T Consensus       132 ~~~-~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~c~~~~~~~~~~c~gdsGgPl~~~~----~l~Gi~S~g~~~~~  203 (224)
T d1t32a1         132 MRR-GTDTLREVQLRVQRDRQCLRIFG---SYDPRRQICVGDRRERKAAFKGDSGGPLLCNN----VAHGIVSYGKSSGV  203 (224)
T ss_dssp             SSC-CCSBCEEEEEEBCCHHHHHHHST---TCCTTTEEEECCTTSSCBCCTTCTTCEEEETT----EEEEEEEECCTTCC
T ss_pred             cCC-CcceeeeeeeeecCHHHHHhhcC---cccccccceeecccccccccccCcCCeEEEcC----EEEEEEEEcCCCCC
Confidence            543 56689999999999999999876   56788999998667778899999999999965    99999999988875


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .  |++||||+.|++||+++|+
T Consensus       204 ~--p~vyt~v~~y~~WI~~~i~  223 (224)
T d1t32a1         204 P--PEVFTRVSSFLPWIRTTMR  223 (224)
T ss_dssp             S--CEEEEEGGGSHHHHHHHHC
T ss_pred             C--CcEEEEHHHhHHHHHHHHc
Confidence            3  9999999999999999986

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=6e-30  Score=190.40  Aligned_cols=152  Identities=29%  Similarity=0.485  Sum_probs=129.5

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.+|++||+|+.   ++|||||||++|+.              ++..+.|+| +|...  .....+..+++.|||.+..
T Consensus        70 ~V~~i~~hp~~~~~~~~~DiAll~L~~~~~--------------~~~~~~p~~-~~~~~--~~~~~~~~~~~~g~g~~~~  132 (224)
T d1eufa_          70 PVRRPIPHPDYNDETLANDIMLLKLTRKAD--------------ITDKVSPIN-LPRSL--AEVKPGMMCSVAGWGRLGV  132 (224)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CCSSCCCCC-CCCTT--CCCCTTCEEEEEESCBSST
T ss_pred             EEEEEEECCccccccccccceeeeccceeE--------------EeeeEeeee-eeccc--ccccCCceEEEecccceec
Confidence            4789999999965   56999999999998              999999999 66544  4566788999999999888


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .......++...+++++.++|...+.   ....+.++|..........|.+|+||||+++.    +|+||.|++..|+  
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~C~~~~~---~~~~~~~~~~~~~~~~~~~c~~dsGgpl~~~~----~l~Gi~s~g~~~~--  203 (224)
T d1eufa_         133 NMPSTDKLQEVDLEVQSEEKCIARFK---NYIPFTQICAGDPSKRKNSFSGDSGGPLVCNG----VAQGIVSYGRNDG--  203 (224)
T ss_dssp             TCCBCSBCEEEEEEBCCTHHHHTTCT---TCCTTTEEEESCTTSCCBCCTTCTTCEEEETT----EEEEEEEECCTTC--
T ss_pred             cccccccceeeeeccCCHHHHHHHhc---cccccceeeeeccccccccccCCCCCeEEEcC----EEEEEEEEcCCCC--
Confidence            77777888999999999999998876   44455666665456777899999999999965    9999999998876  


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|.+||||+.|++||+++||
T Consensus       204 ~~p~vft~V~~y~~WI~~~ik  224 (224)
T d1eufa_         204 TTPDVYTRISSFLSWIHSTMR  224 (224)
T ss_dssp             CSCEEEEEGGGTHHHHHHHTC
T ss_pred             CCCeEEEEHHHHHHHHHHHhC
Confidence            459999999999999999987

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=99.97  E-value=4.3e-30  Score=190.52  Aligned_cols=150  Identities=27%  Similarity=0.448  Sum_probs=129.2

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||+|+.   .+|||||+|++++.              +++++.|+| ||...   ....+..+.++||+.+..
T Consensus        69 ~v~~~~~h~~y~~~~~~~diAll~L~~~~~--------------~~~~v~pi~-l~~~~---~~~~~~~~~~~g~~~~~~  130 (222)
T d1eq9a_          69 DVEDAVVNKNYDDFLLRNDVALVHLTNPIK--------------FNDLVQPIK-LSTND---EDLESNPCTLTGWGSTRL  130 (222)
T ss_dssp             EEEEEEECTTCBTTTTBCCCEEEEESSCCC--------------CBTTBCCCE-ECSCC---TTCTTSEEEEEECCCSST
T ss_pred             eeeeEEEeecccccccccceehhhccCCcc--------------ccccccccc-ccccc---cccccceeEEeeeeeecC
Confidence            5688999999965   56999999999998              999999999 66543   345667899999998877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+.....++...+..++..+|.+.+.    ...+.++|+.. ....+.|.+|+||||+++.    +|+||+|++..|.. 
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~c~~~~~----~~~~~~~c~~~-~~~~~~c~~d~G~pl~~~~----~L~GI~s~~~~c~~-  200 (222)
T d1eq9a_         131 GGNTPNALQEIELIVHPQKQCERDQW----RVIDSHICTLT-KRGEGACHGDSGGPLVANG----AQIGIVSFGSPCAL-  200 (222)
T ss_dssp             TCCCCSBCEEEEEEEECHHHHHHHSS----SCCTTEEEECC-CTTCBCCTTCTTCEEEETT----EEEEEEEECSTTTS-
T ss_pred             CCCCCccceEEEEEEechHHhccccc----cccCcceEecc-CCCCCccccCCcCCEEEcC----EEEEEEEECCCCCC-
Confidence            77778889999999999999988764    56789999974 5566899999999999954    99999999998875 


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|.+||||+.|++||+++|+
T Consensus       201 ~~p~vyt~v~~y~~WI~~~i~  221 (222)
T d1eq9a_         201 GEPDVYTRVSSFVSWINANLK  221 (222)
T ss_dssp             SSCEEEEEGGGGHHHHHHTSC
T ss_pred             CCCcEEEEHHHHHHHHHHHhc
Confidence            579999999999999999986

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.9e-30  Score=193.32  Aligned_cols=158  Identities=29%  Similarity=0.550  Sum_probs=130.8

Q ss_pred             CCceEEEcCCCCC----------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeE
Q psy17330          7 PDSSLHVIPSISD----------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPG   76 (184)
Q Consensus         7 ~~~~i~~Hp~y~~----------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~   76 (184)
                      ++.++++||.|..          ++|||||||.+++.              +++++.|+| ++..........+..+.+.
T Consensus        80 ~v~~i~~hp~~~~~~~~~~~~~~~~DIAllkL~~~~~--------------~~~~v~pic-~~~~~~~~~~~~~~~~~~~  144 (259)
T d1elva1          80 TPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVK--------------MGPTVSPIC-LPGTSSDYNLMDGDLGLIS  144 (259)
T ss_dssp             CEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCC--------------CBTTBCCCB-CCCSSGGGCCCTTCEEEEE
T ss_pred             cceeEeecceeecccccccCCCcccceeeeeccccee--------------hhcccCcee-eccCccccccccceEEEEe
Confidence            4788999999943          46999999999998              999999999 7777767777889999999


Q ss_pred             eecccCCCCCCCcCceEEEEEeeCcccccccccc------cCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEe---CCe
Q psy17330         77 CLGSVPGGGPLSPKLRHVQISVVDNPKCRQIFSN------YGATINENILCAGVLSGGKDSCGGDSGGPLMYPL---DTK  147 (184)
Q Consensus        77 Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~------~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~---~~~  147 (184)
                      ||+.+.... ....++...+++++...|...+..      ....+.+.++|+.. ....+.|.+|+||||++..   +++
T Consensus       145 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~c~gDsGgPl~~~~~~~~~~  222 (259)
T d1elva1         145 GWGRTEKRD-RAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGG-EKGMDSCKGDSGGAFAVQDPNDKTK  222 (259)
T ss_dssp             ESCCCSSCS-SCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEEC-STTCBCCTTCTTCEEEEECSSCTTC
T ss_pred             ccccccccc-cccccccceeeEechhhceeeeecccccccccceeecceeeccC-CCCCccCCCCcCCeEEEEecCCCcE
Confidence            999876654 455788899999999999776542      12346788889874 5667899999999999984   458


Q ss_pred             EEEEEEEEecCCCCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        148 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       148 ~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      |+|+||+|++..|+.   |.+||||+.|.+||+++|+
T Consensus       223 ~~l~Gi~S~~~~c~~---p~vft~V~~~~~WI~~~i~  256 (259)
T d1elva1         223 FYAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQ  256 (259)
T ss_dssp             EEEEEEEEECSSTTS---EEEEEEGGGGHHHHHHHHH
T ss_pred             EEEEEEEEeCCCCCC---ceEEeEHHHHHHHHHHHHH
Confidence            999999999988864   8999999999999999874

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=1.2e-29  Score=189.98  Aligned_cols=159  Identities=32%  Similarity=0.518  Sum_probs=132.8

Q ss_pred             CCceEEEcCCCCC-----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSISD-----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y~~-----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~   81 (184)
                      .+.++++||+|+.     ++|||||||..++.              ++..++|+| ++...  ...+.+..+.+.|||..
T Consensus        73 ~v~~~~~~~~~~~~~~~~d~~iall~l~~~~~--------------~~~~~~pi~-~~~~~--~~~~~~~~~~~~g~g~~  135 (241)
T d1brup_          73 KVSKLVVHQDWNSNQLSNGNDIALLKLASPVS--------------LTDKIQLGC-LPAAG--TILPNNYVCYVTGWGRL  135 (241)
T ss_dssp             EEEEEEECTTCCTTCGGGCCCCEEEEESSCCC--------------CCSSCCCCB-CCCTT--CCCCTTCEEEEEESCCS
T ss_pred             ceeeeEEEeeeeeccccCCceEEEEecccccc--------------cccceeeee-ecccc--ccCCCceeEEEEeeecc
Confidence            3678899999954     45899999999998              999999999 55444  34567889999999988


Q ss_pred             CCCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEE-eCCeEEEEEEEEecCC-
Q psy17330         82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKK-  159 (184)
Q Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~-~~~~~~L~Gi~s~~~~-  159 (184)
                      .........++...+++++.++|++... ......+.++|+. .....+.|.+|+||||+++ .+++|+|+||.|++.. 
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~-~~~~~~~~~~~~~-~~~~~~~C~gdsGgPl~~~~~~~~~~L~Gi~S~g~~~  213 (241)
T d1brup_         136 QTNGASPDILQQGQLLVVDYATCSKPGW-WGSTVKTNMICAG-GDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSL  213 (241)
T ss_dssp             STTSCCCSBCEEEEEEEECHHHHTSTTT-TGGGCCTTEEEEC-CSSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTT
T ss_pred             CCCCcCCCcceEEEEEEeCHHHhCcccc-ccccccccceeec-CCCCccccCCCcccceEEEcCCCCEEEEEEEEECCCC
Confidence            7766667789999999999999987654 2245677788887 4667789999999999998 6779999999999876 


Q ss_pred             -CCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        160 -CAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       160 -c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                       |+..+.|++||||++|++||+++|+
T Consensus       214 ~c~~~~~p~vyt~v~~~~~WI~~~i~  239 (241)
T d1brup_         214 GCNYYHKPSVFTRVSNYIDWINSVIA  239 (241)
T ss_dssp             BSSCTTCCEEEEEGGGSHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEHHHHHHHHHHHHh
Confidence             5666789999999999999999985

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=99.97  E-value=7.3e-30  Score=189.80  Aligned_cols=153  Identities=34%  Similarity=0.572  Sum_probs=128.5

Q ss_pred             CceEEEcCCCCC-CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCC-
Q psy17330          8 DSSLHVIPSISD-DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGG-   85 (184)
Q Consensus         8 ~~~i~~Hp~y~~-~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~-   85 (184)
                      ..+++.||.|.. ++|||||||++|+.              ++..+.|+| +|...  .....+..+.+.|||.+..+. 
T Consensus        69 ~~~i~~h~~~~~~~~DiAll~L~~~v~--------------~~~~~~~i~-~~~~~--~~~~~~~~~~~~g~g~~~~~~~  131 (224)
T d1gdna_          69 LSSVRVHPSYSGNNNDLAILKLSTSIP--------------SGGNIGYAR-LAASG--SDPVAGSSATVAGWGATSEGGS  131 (224)
T ss_dssp             EEEEEECTTCBTTBSCCEEEEESSCCC--------------CBTTBCCCC-BCCTT--CCCCTTCEEEEEESCCSSTTCS
T ss_pred             EEEEEeeeccccccceeEEEeeccccc--------------cccccceee-ccccc--cccccceeeeeeccCccccCCC
Confidence            567899998844 67999999999999              999999999 55443  334578999999999876543 


Q ss_pred             CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCC
Q psy17330         86 PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGF  165 (184)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~  165 (184)
                      .....|+...+++++.++|+..+.  ...+.+.++|+.........|.+|+||||++   ++|+|+||+||+..|+..+.
T Consensus       132 ~~~~~l~~~~v~~i~~~~C~~~~~--~~~~~~~~~~~~~~~~~~~~c~~dsG~pl~~---~~~~l~GI~S~g~~c~~~~~  206 (224)
T d1gdna_         132 STPVNLLKVTVPIVSRATCRAQYG--TSAITNQMFCAGVSSGGKDSCQGDSGGPIVD---SSNTLIGAVSWGNGCARPNY  206 (224)
T ss_dssp             CCCSBCEEEEEEEECHHHHHHHHC--TTTSCTTEEEECCTTCCCBCCTTCTTCEEEC---TTCCEEEEEEECSSSSCTTC
T ss_pred             cCCCEeeeeEEEEeCHHHHhcccc--cCccccceeeeecCCCCccccccccCCceEe---cCCEEEEEEEeCCCCCCCCC
Confidence            345678999999999999998876  3456788888876677778999999999996   34699999999999998889


Q ss_pred             CeEEEeCcchHHHHHhh
Q psy17330        166 PGVYTRVTNYIQWIADN  182 (184)
Q Consensus       166 p~vft~v~~~~~WI~~~  182 (184)
                      |++||||+.|++||+..
T Consensus       207 p~vyt~v~~y~~WIe~~  223 (224)
T d1gdna_         207 SGVYASVGALRSFIDTY  223 (224)
T ss_dssp             CEEEEETTTTHHHHHHH
T ss_pred             CEEEEEHHHHHHHHHHC
Confidence            99999999999999764

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=99.97  E-value=7.9e-30  Score=190.21  Aligned_cols=151  Identities=32%  Similarity=0.596  Sum_probs=129.2

Q ss_pred             CceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCC
Q psy17330          8 DSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGG   84 (184)
Q Consensus         8 ~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~   84 (184)
                      ...++.||.|..   ++||||++|++++.              ++++++||| ||...    ...+..+.++|||.+...
T Consensus        71 ~~~~~~~~~~~~~~~~~diAl~~l~~~~~--------------~~~~~~pic-L~~~~----~~~~~~~~~~gwg~~~~~  131 (228)
T d1fxya_          71 VEVVIKHNRFTKETYDFDIAVLRLKTPIT--------------FRMNVAPAS-LPTAP----PATGTKCLISGWGNTASS  131 (228)
T ss_dssp             EEEEEECTTCBTTTTBTCCEEEEESSCCC--------------CBTTBCCCC-CCSSC----CCTTCEEEEEESSCCCSS
T ss_pred             eeccceeeeeeccccccceeehhcccccc--------------ccccccccc-ccccc----cccccEEEEEecccccCC
Confidence            356778888843   66999999999998              999999999 77543    345678999999987665


Q ss_pred             C-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         85 G-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        85 ~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      . .....|++..+++++.++|++.+.   ..+.+.++|+.........|.+|+||||+++.    +|+||+|++..|+..
T Consensus       132 ~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~c~~~~~~~~~~~~gd~G~Pl~~~~----~l~Gi~s~g~~~~~~  204 (228)
T d1fxya_         132 GADYPDELQCLDAPVLSQAKCEASYP---GKITSNMFCVGFLEGGKDSCQGDSGGPVVCNG----QLQGVVSWGDGCAQK  204 (228)
T ss_dssp             SCCCCSSCEEEEEEBCCHHHHHHHST---TTCCTTEEEESCTTCSCBCCTTCTTCEEEETT----EEEEEEEECSSSSBT
T ss_pred             CCCCCchhEEEEEEEeCHHHHhhhcC---CcccceeeEeecCCCCcccccCccCccEEEeC----EEEEEEEECCCCCCC
Confidence            3 346789999999999999998876   67788999997667778899999999999965    999999999999887


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|.+||||+.|++||+++|+
T Consensus       205 ~~p~vft~v~~~~~WI~~~i~  225 (228)
T d1fxya_         205 NKPGVYTKVYNYVKWIKNTIA  225 (228)
T ss_dssp             TBCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCEEEEEHHHHHHHHHHHHH
Confidence            889999999999999999974

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.3e-30  Score=189.46  Aligned_cols=151  Identities=26%  Similarity=0.498  Sum_probs=126.5

Q ss_pred             CCceEEEcCCCCC------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecc
Q psy17330          7 PDSSLHVIPSISD------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGS   80 (184)
Q Consensus         7 ~~~~i~~Hp~y~~------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~   80 (184)
                      ...++..||.|..      .+|||||+|++|+.              ++.++.|+| +|...    ...+..++++|||.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~dIAll~L~~~~~--------------~~~~~~~i~-l~~~~----~~~~~~~~~~g~g~  127 (225)
T d1npma_          67 QVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSAN--------------LGDKVKPVQ-LANLC----PKVGQKCIISGWGT  127 (225)
T ss_dssp             CEEEEEECTTCCSSCTTCCTTCCEEEEESSCCC--------------CSSSSCCCE-ECSSC----CCTTCEEEEEESSC
T ss_pred             eeeeeEEEEeeeccCcccchhhhhhhhcccccc--------------ccccccccc-ccccc----ccCCceEEEeccce
Confidence            3456788886632      56999999999999              999999999 66543    35678999999998


Q ss_pred             cCCCC-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC
Q psy17330         81 VPGGG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  159 (184)
Q Consensus        81 ~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~  159 (184)
                      +...+ ..+..|+...+++++.++|++.++   ..++++++|+.. ....+.|.||+||||+++    |+|+||.|++..
T Consensus       128 ~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~C~~~-~~~~~~c~gd~G~pl~~~----~~l~Gi~S~g~~  199 (225)
T d1npma_         128 VTSPQENFPNTLNCAEVKIYSQNKCERAYP---GKITEGMVCAGS-SNGADTCQGDSGGPLVCD----GMLQGITSWGSD  199 (225)
T ss_dssp             SSSSSCCCCSBCEEEEEEECCHHHHHHHST---TTCCTTEEEEEC-TTCCBCCTTCTTCEEEET----TEEEEEEEECCS
T ss_pred             ecCCCCCCCCccEEEEEEEecHHHHhhhcc---CCcCCCEEEecC-CCCCccccCCCCceEEEc----cEEEEEEEECCC
Confidence            76543 346789999999999999998876   678999999984 456788999999999995    499999999865


Q ss_pred             -CCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        160 -CAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       160 -c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                       |+..+.|++||||+.|.+||+++|+
T Consensus       200 ~c~~~~~p~vyt~V~~~~~WI~~~i~  225 (225)
T d1npma_         200 PCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             SSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             CCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence             7777789999999999999999985

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2e-29  Score=187.12  Aligned_cols=152  Identities=30%  Similarity=0.554  Sum_probs=130.7

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.++++||.|+.   .+|||||+|++++.              ++..+.|+| +|...    ...+..+.+.||+.+..
T Consensus        66 ~~~~~~~~~~~~~~~~~~diAll~l~~~~~--------------~~~~~~p~c-l~~~~----~~~~~~~~~~g~~~~~~  126 (223)
T d1hj9a_          66 SASKSIVHPSYNSNTLNNDIMLIKLKSAAS--------------LNSRVASIS-LPTSC----ASAGTQCLISGWGNTKS  126 (223)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CBTTBCCCB-CCSSC----CCTTCEEEEEESSCCCS
T ss_pred             ceeeEEeccccccccccchhhhhhccccee--------------eeeeeeccc-ccccc----ccccceEEEEeeccccC
Confidence            4567899999965   66999999999998              999999999 66443    34567899999987765


Q ss_pred             CC-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         84 GG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        84 ~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      .. ..+..++...+++++.++|++.+.   ..+.++++|+.........|.+|+|+||+++.    +|+||+||+..|+.
T Consensus       127 ~~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~c~~~~~~~~~~~~gd~g~pl~~~~----~L~Gi~S~g~~c~~  199 (223)
T d1hj9a_         127 SGTSYPDVLKCLKAPILSDSSCKSAYP---GQITSNMFCAYGLEGKGDSCQGDSGGPVVCSG----KLQGIVSWGSGCQA  199 (223)
T ss_dssp             SSCCCCSSCEEEEEECCCHHHHHHHST---TTCCTTEEECCCCCCCCCCCTTCTTCEEEETT----EEEEEEEECSCCCC
T ss_pred             CCCCCCccceEEEEeecCHHHHHHHhC---CcccccceEEeecCCCcccccCCCCceeEEeC----EEEEEEEEcCCCCC
Confidence            53 345779999999999999999876   67788999998666777899999999999965    89999999999998


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||++|++||+++|+
T Consensus       200 ~~~p~vyt~v~~~~~WI~~~i~  221 (223)
T d1hj9a_         200 KNKPGVYTKVCNYVSWIKQTIA  221 (223)
T ss_dssp             CCCCCEEEEGGGGHHHHHHHHT
T ss_pred             CCCCEEEEEHHHHHHHHHHHHh
Confidence            8899999999999999999985

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.96  E-value=1.5e-29  Score=188.41  Aligned_cols=151  Identities=26%  Similarity=0.362  Sum_probs=129.2

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||+|+.   .+|||||+|++|+.              |+.+++|+| ||..+  .....+..+.+.||+....
T Consensus        71 ~v~~~~~~~~~~~~~~~~diall~L~~~v~--------------~~~~~~p~~-l~~~~--~~~~~~~~~~~~g~~~~~~  133 (224)
T d3rp2a_          71 KVEKQIIHESYNSVPNLHDIMLLKLEKKVE--------------LTPAVNVVP-LPSPS--DFIHPGAMCWAAGWGKTGV  133 (224)
T ss_dssp             EEEEEEECTTCCSSSCCSCCEEEEESSCCC--------------CBTTBCCCC-CCCTT--CCCCTTCEEEEEESSEEET
T ss_pred             eEEEEEecccccccccccceeeeeecceeE--------------eccccceEE-ecccc--cccCCCcEEEEeeeeeeec
Confidence            4688999999955   66999999999999              999999999 77554  4456688999999998877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+.....|++..+++++.++|.+.+.    .....++|+.........|.+|+||||+++.    +|+||+||+..|+  
T Consensus       134 ~~~~~~~l~~~~~~~~~~~~C~~~~~----~~~~~~~~~~~~~~~~~~c~~d~G~Pl~~~~----~l~Gi~S~g~~~~--  203 (224)
T d3rp2a_         134 RDPTSYTLREVELRIMDEKACVDYRY----YEYKFQVCVGSPTTLRAAFMGDSGGPLLCAG----VAHGIVSYGHPDA--  203 (224)
T ss_dssp             TEEECSBCEEEEEEEECGGGTTTTTC----CCTTTEEEECCTTSCCBCCTTTTTCEEEETT----EEEEEEEECCTTC--
T ss_pred             CCCccceeeEEEEEccCHHHhhhccc----ccccceeeeccCcccccCcCCCcCCeEEEcC----EEEEEEEECCCCC--
Confidence            76667789999999999999998764    4567788887567777889999999999964    9999999987765  


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +.|.+||||++|++||+++|+
T Consensus       204 ~~p~vyt~v~~~~~WI~~vi~  224 (224)
T d3rp2a_         204 KPPAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             CSCEEEEEHHHHHHHHHHHHC
T ss_pred             CCCeEEEEHHHHHHHHHHHhC
Confidence            459999999999999999985

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-29  Score=187.53  Aligned_cols=156  Identities=26%  Similarity=0.409  Sum_probs=129.2

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.+++.||.|..   .+|||||+|++++.              ++++++||| ||...   .......+.+.|||.+..
T Consensus        74 ~~~~i~~h~~~~~~~~~~diAll~l~~~~~--------------~~~~~~pic-L~~~~---~~~~~~~~~~~g~g~~~~  135 (240)
T d1mzaa_          74 EIKKFIPFSRVTSDPQSNDIMLVKLQTAAK--------------LNKHVKMLH-IRSKT---SLRSGTKCKVTGWGATDP  135 (240)
T ss_dssp             EEEEEEECCCSSCSSSSSCCEEEEESSCCC--------------CBTTBCCCC-BCSSC---CCCTTCEEEEEECCCSST
T ss_pred             eeeeeeeeccccccccCcceEEEeecceee--------------eeecccccc-ccccc---cccceeeEEEEEeccccC
Confidence            3577899999966   56999999999999              999999999 66444   234556788999998754


Q ss_pred             C-CCCCcCceEEEEEeeCccccccccccc-CCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC
Q psy17330         84 G-GPLSPKLRHVQISVVDNPKCRQIFSNY-GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA  161 (184)
Q Consensus        84 ~-~~~~~~l~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~  161 (184)
                      . +..+..|+...+++++.++|++..... .....+.++|+.......+.|.+|+||||+++.    +|+||.|++..|+
T Consensus       136 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~gDsGgPl~~~~----~l~Gi~S~g~~c~  211 (240)
T d1mzaa_         136 DSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICKG----VFHAIVSGGHECG  211 (240)
T ss_dssp             TCSSCCSBCEEEEEEECCHHHHTSTTTTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEETT----EEEEEECSSCCSS
T ss_pred             CcCcCCcccEEEEEEEecHHHhhhhhhccCCcccccceEEeccCCCCccCccCCCCCeEEECC----EEEEEEEeCCCCC
Confidence            3 455678999999999999998765421 234578899998767778899999999999965    9999999999998


Q ss_pred             CCCCCeEEEeCc-chHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVT-NYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~-~~~~WI~~~i~  184 (184)
                      ....|.+||||+ +|++||+++|+
T Consensus       212 ~~~~p~vftrvs~~y~~WI~~~i~  235 (240)
T d1mzaa_         212 VATKPGIYTLLTKKYQTWIKSNLV  235 (240)
T ss_dssp             CTTCCEEEEECCHHHHHHHHHHTC
T ss_pred             CCCCCeEEEEEHHHHHHHHHHHcc
Confidence            888899999997 68999999985

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=196.16  Aligned_cols=163  Identities=20%  Similarity=0.355  Sum_probs=114.5

Q ss_pred             CCceEEEcCCCCC------------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceec---cCCCC
Q psy17330          7 PDSSLHVIPSISD------------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLD---LSSGG   71 (184)
Q Consensus         7 ~~~~i~~Hp~y~~------------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~---~~~~~   71 (184)
                      ++.++++||+|+.            ++|||||||++|+.              |+++|+||| ||..+....   ...+.
T Consensus        72 ~v~~i~~Hp~y~~~~~~~~~~~~~~~~DIALl~L~~~~~--------------~s~~v~PIc-Lp~~~~~~~~~~~~~~~  136 (287)
T d1rrka1          72 EIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK--------------YGQTIRPIC-LPCTEGTTRALRLPPTT  136 (287)
T ss_dssp             EEEEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCC--------------CBTTBCCCB-CTTBHHHHHHTTCCTTC
T ss_pred             eeEEEEecCCccccccccccCCCcccccEEEEecccCcc--------------ccceEEEEe-cCCccccccccccCCcc
Confidence            5788999999963            46999999999998              999999999 886543221   11222


Q ss_pred             eeeeEeecccCCC-------CCCCcCceEEEEEeeCcccccc---ccc---------ccCCCCCCCeEEeeecC--CCCC
Q psy17330         72 LRGPGCLGSVPGG-------GPLSPKLRHVQISVVDNPKCRQ---IFS---------NYGATINENILCAGVLS--GGKD  130 (184)
Q Consensus        72 ~~~~~Gwg~~~~~-------~~~~~~l~~~~~~~~~~~~C~~---~~~---------~~~~~~~~~~~C~~~~~--~~~~  130 (184)
                      .+...+|+.....       ......++...+.+.+...|..   ...         .....++++||||+...  ...+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~~  216 (287)
T d1rrka1         137 TCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPN  216 (287)
T ss_dssp             CHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCC
T ss_pred             eEeecCceeecCCCccccccccCCceeEEEEEEEeccchhhhhhhhhhccccccccccccccccCCceEecccCCCcCCC
Confidence            2222333322211       1234566777888877665422   111         12246789999997433  3456


Q ss_pred             CCCCCCCCeeEEEeCCeEEEEEEEEecCC--CC--------CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CA--------EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       131 ~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~--c~--------~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .|.||+||||+++.+++|+|+||+|||..  |.        ....|.+||||+.|.+||+++|+
T Consensus       217 ~C~GDSGgPL~~~~~~~~~lvGI~S~G~~~~~~~~~~~~~~~~~~~~vyt~V~~y~~WI~~~i~  280 (287)
T d1rrka1         217 TCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ  280 (287)
T ss_dssp             CCGGGTTCEEEEEETTEEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTT
T ss_pred             CCCCCccCCeEEecCCeEEEEEEEEecCCcCcCCCCCCCcCCCCCCcEEEEHHHHHHHHHHHhc
Confidence            79999999999999999999999999743  32        22357899999999999999985

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=99.96  E-value=1.9e-28  Score=183.00  Aligned_cols=155  Identities=29%  Similarity=0.536  Sum_probs=127.2

Q ss_pred             ceEEEcCCCCC-----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          9 SSLHVIPSISD-----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         9 ~~i~~Hp~y~~-----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ..+.+||.|..     ++|||||||++++.              ++..++||| ||...  ........+++.|||....
T Consensus        75 ~~~~~~~~~~~~~~~~~~diall~l~~~~~--------------~~~~~~pic-L~~~~--~~~~~~~~~~~~g~g~~~~  137 (236)
T d1elta_          75 NSVFIHSGWNSDDVAGGYDIALLRLNTQAS--------------LNSAVQLAA-LPPSN--QILPNNNPCYITGWGKTST  137 (236)
T ss_dssp             EEEEECTTCCTTCGGGCCCCEEEEESSCCC--------------CSSSCCCCC-CCCTT--CCCCTTCCEEEEESCCSST
T ss_pred             eEEEEeeeecccccccCceEEEeeccCcce--------------eecccceee-cCchh--cccCCCceEEEeccccccc
Confidence            45678888744     45999999999998              999999999 67544  3445567899999998877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC--CCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCA  161 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~--~c~  161 (184)
                      .......+++..+++++.++|...... .......++|+.  ......|.+|+||||+++.+++|+|+||.||+.  +|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~c~gdsGgpl~~~~~~~~~l~GI~s~~~~~~c~  214 (236)
T d1elta_         138 GGPLSDSLKQAWLPSVDHATCSSSGWW-GSTVKTTMVCAG--GGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCN  214 (236)
T ss_dssp             TCCCCSBCEEEECCEECHHHHTSTTTT-GGGSCTTEEEEC--CSSCBCCTTCTTCEEEEEETTEEEEEEEEEECCSSCTT
T ss_pred             CcccCccceeeeeEEEcHHHhhhhccc-ccccceeeeecC--CccccccccccccceEEEECCeEEEEEEEEEeCCCCCC
Confidence            766677889999999999999876552 234456666665  555678999999999999999999999999964  577


Q ss_pred             CCCCCeEEEeCcchHHHHHhhh
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i  183 (184)
                      ..+.|.+||||++|++||+++|
T Consensus       215 ~~~~p~vyt~v~~y~~WI~~vi  236 (236)
T d1elta_         215 ASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             CTTCCEEEEEGGGGHHHHHHHC
T ss_pred             CCCCCEEEEEHHHHHHHHHHhC
Confidence            7788999999999999999986

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-30  Score=192.95  Aligned_cols=153  Identities=26%  Similarity=0.405  Sum_probs=128.1

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||.|+.   ++|||||||++++.              +++++.|+| ||...  .....+..+.+.|||.+..
T Consensus        70 ~v~~i~~~~~~~~~~~~~DiAll~L~~~i~--------------~~~~v~~~~-l~~~~--~~~~~~~~~~~~G~~~~~~  132 (227)
T d1fq3a_          70 PVKRPIPHPAYNPKNFSNDIMLLQLERKAK--------------RTRAVQPLR-LPSNK--AQVKPGQTCSVAGWGQTAP  132 (227)
T ss_dssp             EEEEECCCTTCCTTTTTTCCEEEEESSCCC--------------CCSSCCCCC-CCCSS--CCCCTTCEEECCCSCCSTT
T ss_pred             EEEEEEecccCCCCCCCcchhhhhcccccc--------------cceeEEEEe-ecccc--cccCCCCEEEEEeeccccC
Confidence            4678999999965   66999999999998              999999999 66544  3456788999999999877


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+.....++...+.+++.++|++.+..  ....+...|..........|.+|+||||+++.    +|+||+|++..|+. 
T Consensus       133 ~~~~~~~l~~~~~~~~~~~~C~~~~~~--~~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~~----~l~GI~s~g~~~~~-  205 (227)
T d1fq3a_         133 LGKHSHTLQEVKMTVQEDRKCESDLRH--YYDSTIELCVGDPEIKKTSFKGDSGGPLVCNK----VAQGIVSYGRNNGM-  205 (227)
T ss_dssp             TSCCCSBCCBCEEECCCHHHHTTTCTT--TCCTTTEECCSCTTSSCBCCTTCTTCBCBSSS----SCCCEECCCCTTSC-
T ss_pred             cccccccceEEEEEEEcHHHhhhhhcc--cccccceeeeeccccccccccCCCCceEEEeC----EEEEEEEEcCCCCC-
Confidence            777778899999999999999988762  33345555555456777899999999999964    99999999988875 


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                       .|.+||||++|++||+++|+
T Consensus       206 -~p~vyt~v~~y~~WI~~~i~  225 (227)
T d1fq3a_         206 -PPRACTKVSSFVHWIKKTMK  225 (227)
T ss_dssp             -SCCCEECHHHHHHHHHHHTT
T ss_pred             -CCcEEEEHHHHHHHHHHHHH
Confidence             38999999999999999986

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.5e-28  Score=184.01  Aligned_cols=152  Identities=28%  Similarity=0.532  Sum_probs=128.6

Q ss_pred             CCceEEEcCCCCC--------------CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCe
Q psy17330          7 PDSSLHVIPSISD--------------DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGL   72 (184)
Q Consensus         7 ~~~~i~~Hp~y~~--------------~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~   72 (184)
                      ++++++.||.|+.              .+|||||||++++.              +++.+.|+| ||..+    ...+..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiAll~L~~~i~--------------~~~~~~~i~-lp~~~----~~~~~~  127 (237)
T d1ao5a_          67 LVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPAD--------------ITDVVKPIA-LPTKE----PKPGSK  127 (237)
T ss_dssp             CEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCC--------------CCSSSCCCC-CCCSC----CCTTCE
T ss_pred             EEEEEeecccccccccccccccCccccccceeeeccCcccc--------------cccccceec-cCCCC----Ccccce
Confidence            5678899998853              46999999999998              999999999 77543    346789


Q ss_pred             eeeEeecccCCC-CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEE
Q psy17330         73 RGPGCLGSVPGG-GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYII  151 (184)
Q Consensus        73 ~~~~Gwg~~~~~-~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~  151 (184)
                      ++++|||..... ......+....+..++.+.|.....   ..+.++++|+.......+.|.+|+|+||+++.    +|+
T Consensus       128 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~---~~~~~~~~~~~~~~~~~~~c~gdsG~pl~~~~----~l~  200 (237)
T d1ao5a_         128 CLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYL---QKVTDVMLCAGEMGGGKDTCRDDSGGPLICDG----ILQ  200 (237)
T ss_dssp             EEEEESCCSSCC-CCCCSBCEEEEEEEECHHHHHHHCS---SCCCTTEEEEECTTCSCBCCTTCTTCEEEETT----EEE
T ss_pred             EEEeeeeeeccccccCCccceeeEEEEEehHHhhhhhc---CCCCCCeEEEccCCCCCcccCCCCCCeeEEcc----EEE
Confidence            999999976554 3446678889999999999998876   67788999997666777899999999999964    999


Q ss_pred             EEEEecCC-CCCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        152 GVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       152 Gi~s~~~~-c~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ||.||+.. |+..+.|.+||||+.|++||+++|+
T Consensus       201 Gi~S~g~~~c~~~~~p~vft~V~~y~~WI~~~i~  234 (237)
T d1ao5a_         201 GTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM  234 (237)
T ss_dssp             EEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHH
T ss_pred             EEEEEecCCCCCCCCCeEEEEHHHHHHHHHHHHH
Confidence            99999864 8777889999999999999999884

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=99.96  E-value=6.1e-29  Score=185.22  Aligned_cols=150  Identities=27%  Similarity=0.572  Sum_probs=122.8

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.+|++||+|..   ++|||||+|++++.              ++.++.|+| ++..    ....+..+.++|||.+..
T Consensus        69 ~v~~i~~~~~y~~~~~~~diAll~l~~~~~--------------~~~~~~pi~-l~~~----~~~~~~~~~~~g~g~~~~  129 (226)
T d1azza_          69 QSTDFTVHENYNSFVISNDIAVIRLPVPVT--------------LTAAIATVG-LPST----DVGVGTVVTPTGWGLPSD  129 (226)
T ss_dssp             EECCEEECTTCBTTTTBSCCEEEECSSCCC--------------CCSSSCCCB-CCSS----CCCTTCEEEEEESSCSST
T ss_pred             EeeeeeeccccccccccchhhhhhcCCccc--------------eeecccccc-cccc----ccccccceeeecccccCC
Confidence            4688999999965   66999999999998              999999999 5543    345678899999998765


Q ss_pred             CC-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCC-
Q psy17330         84 GG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-  161 (184)
Q Consensus        84 ~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~-  161 (184)
                      .. .....|++..+++++.++|+..+.   .. .+.+.|.. .....+.|.+|+||||+++.    +|+||+|++..|+ 
T Consensus       130 ~~~~~~~~l~~~~~~~~~~~~C~~~~~---~~-~~~~~~~~-~~~~~~~c~gdsG~Pl~~~~----~l~Gi~S~g~~~~~  200 (226)
T d1azza_         130 SALGISDVLRQVDVPIMSNADCDAVYG---IV-TDGNICID-STGGKGTCNGDSGGPLNYNG----LTYGITSFGAAAGC  200 (226)
T ss_dssp             TCSSSCSBCEECCEEEECHHHHHHHHS---CC-CTTEEEEC-CTTTCBCCTTCTTCEEEETT----EEEEEEEEEETTCT
T ss_pred             CcCccccEeEEEEEEEEeHHHhhhhhC---cc-cccceecc-ccCCCccccCCcCCCEEEcC----EEEEEEEEeCCCCC
Confidence            43 345678899999999999999876   33 34445544 25667889999999999864    9999999998765 


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..+.|++||||+.|.+||+++|.
T Consensus       201 ~~~~p~v~t~v~~y~~WI~~~~g  223 (226)
T d1azza_         201 EAGYPDAFTRVTYFLDWIQTQTG  223 (226)
T ss_dssp             TSCCCEEEEESGGGHHHHHHHHC
T ss_pred             CCCCCEEEEEHHHhHHHHHHHhC
Confidence            55679999999999999999874

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-28  Score=184.58  Aligned_cols=160  Identities=29%  Similarity=0.510  Sum_probs=131.4

Q ss_pred             CCCceEEEcCCC---CCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          6 GPDSSLHVIPSI---SDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         6 ~~~~~i~~Hp~y---~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      .+..+.+.|+.|   ...+||||++|++++.              +++.+.|+| ++...  ........++..||+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~DiAl~~L~~~~~--------------~~~~~~p~~-l~~~~--~~~~~~~~~~~~g~~~~~  145 (247)
T d1rjxb_          83 EPHVQEIEVSRLFLEPTRKDIALLKLSSPAV--------------ITDKVIPAC-LPSPN--YVVADRTECFITGWGETQ  145 (247)
T ss_dssp             CTTCEEEEEEEEEECSSSCCEEEEEESSCCC--------------CCSSCCCCB-CCCTT--CCCCTTCEEEEEECCC--
T ss_pred             cceeeEEeeccccCCCccchhhhhhhhcccc--------------ccccccccc-ccccc--cccCCCceeeeccccccc
Confidence            345567777766   3477999999999998              999999999 65443  345667788899998765


Q ss_pred             CCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      .. .....++...+.+++.+.|..... ......+.++|+.......+.|.||+|+||++..+++|+|+||+||+..|+.
T Consensus       146 ~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~S~~~~c~~  223 (247)
T d1rjxb_         146 GT-FGAGLLMEAQLPVIENKVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCAR  223 (247)
T ss_dssp             ---CCCSBCEEEEEEEECHHHHTSTTT-TTTCSCTTEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEECTTSCCBB
T ss_pred             CC-CCCCcceEEEEEEEchHHhhhhhc-cCcccccceeEEeccCCCcccccCCccceEEEeeCCEEEEEEEEEeCCCCCC
Confidence            44 456788899999999999977655 2356778899998667788899999999999999999999999999999988


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|.+||||++|++||+++|+
T Consensus       224 ~~~p~v~t~v~~~~~WI~~~i~  245 (247)
T d1rjxb_         224 PNKPGVYVRVSRFVTWIEGVMR  245 (247)
T ss_dssp             TTBCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCEEEEEHHHHHHHHHHHHh
Confidence            7889999999999999999984

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-28  Score=182.14  Aligned_cols=151  Identities=25%  Similarity=0.368  Sum_probs=125.0

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||.|+.   .+|||||+|.+|+.              ++..+.|+| ++...  .....+..+...||+....
T Consensus        69 ~~~~~~~~p~~~~~~~~~diall~l~~~~~--------------~~~~~~pi~-~~~~~--~~~~~~~~~~~~g~~~~~~  131 (224)
T d1nn6a_          69 EVIKQFRHPKYNTSTLHHDIMLLKLKEKAS--------------LTLAVGTLP-FPSQF--NFVPPGRMCRVAGWGRTGV  131 (224)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCC--------------CCSSCCCCC-CCSCC--CCCCTTCEEEEEECCCCSS
T ss_pred             eEEEEEEeecccccccccchhhhcccCCcc--------------ccccccccc-ccccc--cccCCCceeeecccccccc
Confidence            4568899999965   56999999999998              999999999 66444  3445678899999998777


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  163 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~  163 (184)
                      .+.....++...+++++.++|+..+.    ......+|+.......+.|.+|+||||++..    +|+||.|++..|.. 
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~C~~~~~----~~~~~~~~~~~~~~~~~~c~gDsG~PL~~~~----~l~GI~s~g~~~~~-  202 (224)
T d1nn6a_         132 LKPGSDTLQEVKLRLMDPQACSHFRD----FDHNLQLCVGNPRKTKSAFKGDSGGPLLCAG----VAQGIVSYGRSDAK-  202 (224)
T ss_dssp             SCCCCSBCEEEEEEBCCGGGGTTSTT----CCTTTEEEECCTTTC--CCCCCTTCEEEETT----EEEEEEEECCTTCC-
T ss_pred             CCCccccceEEEEEecCHHHHhhhcc----cccceeeeccCccccccccCCCccceEEECC----EEEEEEEECCCCCC-
Confidence            76677889999999999999988765    3456777776556677899999999999964    99999999876654 


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                       .|.+||||+.|.+||+++|+
T Consensus       203 -~p~vyt~v~~y~~WI~~~i~  222 (224)
T d1nn6a_         203 -PPAVFTRISHYRPWINQILQ  222 (224)
T ss_dssp             -SCEEEEEHHHHHHHHHHHHH
T ss_pred             -CCeEEEEHHHHHHHHHHHHh
Confidence             59999999999999999984

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-28  Score=180.97  Aligned_cols=154  Identities=29%  Similarity=0.443  Sum_probs=128.8

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.++++||.|+.   ++|||||+|++++.              +++++.|+| +|...  .....+..+.+.|||.+..
T Consensus        71 ~v~~i~~~~~y~~~~~~~diAll~l~~~~~--------------~~~~v~p~~-l~~~~--~~~~~~~~~~~~g~~~~~~  133 (228)
T d1bioa_          71 DVLRAVPHPDSQPDTIDHDLLLLQLSEKAT--------------LGPAVRPLP-WQRVD--RDVAPGTLCDVAGWGIVNH  133 (228)
T ss_dssp             EEEEEEECTTCCTTCCTTCCEEEEESSCCC--------------CBTTBCCCC-BCCSC--CCCCTTCEEEEEESSCCST
T ss_pred             cceeeeeeecccCCCcccceehhhccccce--------------eeeEEeeec-ccccc--cccccCceEEEecceeecC
Confidence            5678999999965   56999999999999              999999999 66443  4556788899999999887


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC-CCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~-c~~  162 (184)
                      .+.....++...+++++.++|...+.  .........|+. .....+.|.+|+|+||+++.    +|+||+|++.. |+.
T Consensus       134 ~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~gdsG~Pl~~~~----~LvGi~S~g~~~c~~  206 (228)
T d1bioa_         134 AGRRPDSLQHVLLPVLDRATCNRRTH--HDGAITERLMCA-ESNRRDSCKGDSGGPLVCGG----VLEGVVTSGSRVCGN  206 (228)
T ss_dssp             TCCCCSBCEEEEEEEECHHHHHSTTT--TTTCCCTTEEEE-CCSSCBCCTTTTTCEEEETT----EEEEEECCSCCCSSC
T ss_pred             CCCCCCcceEEEEEEeCHHHHhhhhc--ccccccccceee-cccCCCcccCCcCccEEEcC----EEEEEEEECCCCCCC
Confidence            77777889999999999999988765  233445556665 36677899999999999964    99999999754 777


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|.+||||+.|++||+++|+
T Consensus       207 ~~~p~v~t~v~~~~~WI~~~i~  228 (228)
T d1bioa_         207 RKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             TTSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCEEEEEHHHHHHHHHHHhC
Confidence            7889999999999999999984

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.96  E-value=2.2e-28  Score=182.78  Aligned_cols=139  Identities=30%  Similarity=0.575  Sum_probs=118.1

Q ss_pred             CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCC-CCCcCceEEEEEe
Q psy17330         20 DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGG-PLSPKLRHVQISV   98 (184)
Q Consensus        20 ~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~   98 (184)
                      .+|||||+|.+++.              +++.+.|+| ++...    ......+.++|||.+.... .....++...+++
T Consensus        92 ~~Diall~L~~~v~--------------~~~~i~~i~-l~~~~----~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~  152 (235)
T d1tona_          92 SNDLMLLHLSEPAD--------------ITGGVKVID-LPTKE----PKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHL  152 (235)
T ss_dssp             TTCCEEEEESSCCC--------------CCSSCCCCC-CCCSC----CCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEE
T ss_pred             ccceeEEEecCccc--------------cCCcccccc-ccccc----ccccceeEEEEccccccccccccccceeeeeee
Confidence            56999999999998              999999999 65433    3456788999999876553 3456789999999


Q ss_pred             eCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC-CCCCCCCCeEEEeCcchHH
Q psy17330         99 VDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTNYIQ  177 (184)
Q Consensus        99 ~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~-~c~~~~~p~vft~v~~~~~  177 (184)
                      ++.++|+..+.   ....+.++|+.......+.|.+|+||||+++.    +|+||.||+. .|+..+.|.+||||++|++
T Consensus       153 ~~~~~C~~~~~---~~~~~~~~c~~~~~~~~~~c~gdsG~Pl~~~~----~l~Gi~S~g~~~c~~~~~p~vyt~v~~y~~  225 (235)
T d1tona_         153 LSNEKCIETYK---DNVTDVMLCAGEMEGGKDTCAGDSGGPLICDG----VLQGITSGGATPCAKPKTPAIYAKLIKFTS  225 (235)
T ss_dssp             ECGGGCGGGGS---TTGGGGEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEECCCCSSCSCTTCCEEEEEGGGGHH
T ss_pred             eCHHHHHHHhC---CCCCCCceEeCcCCCCccccCCCcCCeEEEcC----EEEEEEEeCCCCCCCCCCCeEEEEHHHHHH
Confidence            99999999886   56788899998667777899999999999964    9999999987 4777778999999999999


Q ss_pred             HHHhhhC
Q psy17330        178 WIADNIS  184 (184)
Q Consensus       178 WI~~~i~  184 (184)
                      ||+++|+
T Consensus       226 WI~~~i~  232 (235)
T d1tona_         226 WIKKVMK  232 (235)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-28  Score=184.17  Aligned_cols=163  Identities=30%  Similarity=0.511  Sum_probs=128.4

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCc-eeccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEF-RLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~-~~~~~~~~~~~~~Gwg~~~   82 (184)
                      .+.+++.||.|..   .+|||||||++|+.              ++.+++|+| ||.... ......+..+.+.|||.+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~DiAll~L~~~v~--------------~~~~i~pic-l~~~~~~~~~~~~~~~~~~~~~~~~~  136 (254)
T d2bz6h1          72 RVAQVIIPSTYVPGTTNHDIALLRLHQPVV--------------LTDHVVPLC-LPERTFSERTLAFVRFSLVSGWGQLL  136 (254)
T ss_dssp             EEEEEEEETTCCTTSCSSCCEEEEESSCCC--------------CBTTBCCCB-CCCHHHHHHTGGGCCEEEEEESCBSS
T ss_pred             eeeeeeecccccccccccceeEEEecCccc--------------ccceEeeee-cCccccccccccCCceEEEeccCccC
Confidence            3467899999955   56999999999998              999999999 764432 2344567889999999987


Q ss_pred             CCCCCCcCceEEEEEeeCccccccccc-c-cCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFS-N-YGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKC  160 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~-~-~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c  160 (184)
                      ...............+...+.|..... . .....++.++|..........|.+|+||||++..+++|+|+||.||+..|
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgPl~~~~~~~~~lvGi~S~g~~c  216 (254)
T d2bz6h1         137 DRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGC  216 (254)
T ss_dssp             TTSCBCSBCEEEEEEEECHHHHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEECSSS
T ss_pred             CCCcccccceeeeecccchhhhhhhhhcccccccccccceeeeccCCCcccccCccccceEEccCCeEEEEEEEEeCCCC
Confidence            766555555666666666554433222 1 22455677777765567778999999999999999999999999999999


Q ss_pred             CCCCCCeEEEeCcchHHHHHhhhC
Q psy17330        161 AEVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       161 ~~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      +..+.|.+||||+.|++||+++|+
T Consensus       217 ~~~~~p~vytrv~~~~~WI~~~i~  240 (254)
T d2bz6h1         217 ATVGHFGVYTRVSQYIEWLQKLMR  240 (254)
T ss_dssp             SCTTCCEEEEEGGGGHHHHHHHHT
T ss_pred             CCCCCCEEEEEHHHHHHHHHHHHh
Confidence            988899999999999999999985

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=5.6e-28  Score=180.71  Aligned_cols=146  Identities=30%  Similarity=0.523  Sum_probs=123.0

Q ss_pred             CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEEee
Q psy17330         20 DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISVV   99 (184)
Q Consensus        20 ~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~   99 (184)
                      .+|||||||..++.              ++..+.|+| ++....  ....+......||+.+.........++...++++
T Consensus        91 ~~diAll~l~~~~~--------------~~~~~~p~~-l~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~  153 (240)
T d1gvkb_          91 GYDIALLRLAQSVT--------------LNSYVQLGV-LPRAGT--ILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTV  153 (240)
T ss_dssp             CCCCEEEEESSCCC--------------CBTTBCCCC-CCCTTC--CCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEE
T ss_pred             CcceeeecccCccc--------------cccccccee-eccCcc--ccccccceeEeccccccccccccceeeEEEEEEE
Confidence            66999999999999              999999999 665443  3345567778999988777777788999999999


Q ss_pred             CcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC--CCCCCCCeEEEeCcchHH
Q psy17330        100 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYTRVTNYIQ  177 (184)
Q Consensus       100 ~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~--c~~~~~p~vft~v~~~~~  177 (184)
                      +.+.|..... ......+.++|+. .....+.|.||+|+||++..+++|+|+||.||+..  |...+.|.+||||+.|++
T Consensus       154 ~~~~~~~~~~-~~~~~~~~~~c~~-~~~~~~~c~gDsG~pl~~~~~~~~~lvGI~S~~~~~~c~~~~~p~vyt~v~~~~~  231 (240)
T d1gvkb_         154 DYAICSSSSY-WGSTVKNSMVCAG-GDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYIS  231 (240)
T ss_dssp             CHHHHTSTTT-TGGGCCTTEEEEC-CSSSCBCCTTCTTCEEEEEETTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHH
T ss_pred             cHHHhcceec-cCCccCCceEEec-CCCCCccccCccccceEEEECCEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHH
Confidence            9999877765 2346688999998 35667899999999999999999999999999875  566678999999999999


Q ss_pred             HHHhhhC
Q psy17330        178 WIADNIS  184 (184)
Q Consensus       178 WI~~~i~  184 (184)
                      ||+++|+
T Consensus       232 WI~~~i~  238 (240)
T d1gvkb_         232 WINNVIA  238 (240)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999984

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.7e-28  Score=182.72  Aligned_cols=151  Identities=26%  Similarity=0.476  Sum_probs=111.6

Q ss_pred             CceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCC
Q psy17330          8 DSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGG   84 (184)
Q Consensus         8 ~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~   84 (184)
                      +..+..||.|+.   .+|||||+|++++.              ++++++||| ||...    ......++..||+.+...
T Consensus        70 ~~~~~~~~~~~~~~~~~Diall~L~~~v~--------------~~~~v~pi~-l~~~~----~~~~~~~~~~g~~~~~~~  130 (228)
T d1sgfa_          70 MSLLNEHTPQPEDDYSNDLMLLRLSKPAD--------------ITDVVKPIT-LPTEE----PKLGSTCLASGWGSTTPI  130 (228)
T ss_dssp             GGGC----CCTTCBCTTCCEEEEESSCCC--------------CCSSCCCCC-CCCSC----CCTTCEEEEC-------C
T ss_pred             eeeecccCCCCccccccceeEEeeccccc--------------cCCceeeEe-cCccc----cccCcceEEEeeeeccCC
Confidence            345678898865   56999999999999              999999999 77543    345678899999877554


Q ss_pred             -CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC-CCCC
Q psy17330         85 -GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAE  162 (184)
Q Consensus        85 -~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~-~c~~  162 (184)
                       +.....|+...+++++.++|+..+.   ....+.++|+.........|.+|+|+||+++.    +|+||+|++. .|+.
T Consensus       131 ~~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~G~pl~~~~----~l~Gv~S~g~~~c~~  203 (228)
T d1sgfa_         131 KFKYPDDLQCVNLKLLPNEDCDKAHE---MKVTDAMLCAGEMDGGSYTCEHDSGGPLICDG----ILQGITSWGPEPCGE  203 (228)
T ss_dssp             ---------CEEEEEECTHHHHTTCS---SBCCTTEEEEEECSSSEEECCCCTTCEEEETT----EEEEEECCCCSSCCC
T ss_pred             ccCCCCccEEEEEEEeCHHHhhhhcc---CCcccceEEeccCCCCccccCCCcCCcEEEeC----EEEEEEEECCCCCCC
Confidence             3456788999999999999988765   55677888887666667889999999999965    9999999986 5877


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ...|++||||+.|++||+++|+
T Consensus       204 ~~~p~vyt~V~~~~~WI~~~i~  225 (228)
T d1sgfa_         204 PTEPSVYTKLIKFSSWIRETMA  225 (228)
T ss_dssp             SSCCEEEEESGGGHHHHHHHHH
T ss_pred             CCCCeEEEEHHHHHHHHHHHHh
Confidence            7889999999999999999874

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=99.95  E-value=8.6e-28  Score=179.26  Aligned_cols=154  Identities=27%  Similarity=0.394  Sum_probs=125.8

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      .+.+|++||+|+.   .+|||||+|+++.               +.++++|+| ||..........+..+++.|||... 
T Consensus        70 ~v~~i~~hp~y~~~~~~~DiALl~L~~~~---------------~~~~v~pi~-l~~~~~~~~~~~~~~~~~~g~~~~~-  132 (230)
T d2hlca_          70 NSERIISHSMFNPDTYLNDVALIKIPHVE---------------YTDNIQPIR-LPSGEELNNKFENIWATVSGWGQSN-  132 (230)
T ss_dssp             ECSEEEECTTCBTTTTBTCCEEEECSCCC---------------CCSSCCCCB-CCCGGGGGCCCTTCEEEEEESSCCS-
T ss_pred             eeEeEEeeecccccccccceeEEEeeccc---------------ccccceeEE-eeccccccccccceeEEEEeecccc-
Confidence            4788999999965   5699999998764               778899999 7877666666778889999998643 


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCC-CC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKC-AE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c-~~  162 (184)
                        .....++...+..++.++|.+.+.  .....+.++|+. .......|.+|+|+|+++.+  +|+|+||.||+.+| +.
T Consensus       133 --~~~~~~~~~~~~~~~~~~c~~~~~--~~~~~~~~~~~~-~~~~~~~~~gdsGgp~~~~~--~~~l~Gi~S~~~~~~~~  205 (230)
T d2hlca_         133 --TDTVILQYTYNLVIDNDRCAQEYP--PGIIVESTICGD-TSDGKSPCFGDSGGPFVLSD--KNLLIGVVSFVSGAGCE  205 (230)
T ss_dssp             --SCCCBCEEEEEEEECHHHHHTTSC--TTSSCTTEEEEC-CTTSCBCCTTCTTCEEEEGG--GTEEEEEEEECCTTCTT
T ss_pred             --ccchhhheeeeccccchhhhhccc--cccccccceEec-cccCccccccccCCCeEECC--CeEEEEEEEEeCCCCCC
Confidence              234568889999999999988765  345567788886 46667889999999999864  57999999998763 45


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|.+||||++|.+||+++|+
T Consensus       206 ~~~p~vyt~V~~y~~WI~~~~~  227 (230)
T d2hlca_         206 SGKPVGFSRVTSYMDWIQQNTG  227 (230)
T ss_dssp             SCCCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCeEEEEhHHhHHHHHHHhC
Confidence            6789999999999999999874

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=99.95  E-value=2.6e-27  Score=177.13  Aligned_cols=159  Identities=29%  Similarity=0.465  Sum_probs=130.6

Q ss_pred             CCceEEEcCCCCC-----CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeeccc
Q psy17330          7 PDSSLHVIPSISD-----DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSV   81 (184)
Q Consensus         7 ~~~~i~~Hp~y~~-----~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~   81 (184)
                      .++++++||+|+.     ++|||||+|++++.              ++..+.|+| +|...  .....+..+++.||+..
T Consensus        73 ~v~~~~~h~~~~~~~~~~~~diall~l~~~~~--------------~~~~~~pi~-~~~~~--~~~~~~~~~~~~g~~~~  135 (241)
T d1m9ua_          73 NVDSYTMHENYGAGTASYSNDIAILHLATSIS--------------LGGNIQAAV-LPANN--NNDYAGTTCVISGWGRT  135 (241)
T ss_dssp             EEEEEEECTTTTCSSSTTTTCCEEEEESSCCC--------------CCSSCCCCC-CCSCS--SCCCTTCEEEEEESSCS
T ss_pred             cceeeeeeeeeccccccccccceeeeccceee--------------eeeceeeee-eeccc--cccccceEEEEeecccc
Confidence            3578999999964     45999999999999              999999999 66544  35568889999999988


Q ss_pred             CCCCCCCcCceEEEEEeeCcccccccccccC-CCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC--
Q psy17330         82 PGGGPLSPKLRHVQISVVDNPKCRQIFSNYG-ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--  158 (184)
Q Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~-~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~--  158 (184)
                      ...+.....++...+++++.++|++.+.... ....+..+|........+.|.+|+||||++.. +.|+|+||+|+..  
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sGgpl~~~~-~~~~l~Gi~s~~~~~  214 (241)
T d1m9ua_         136 DGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPD-GGTRVVGVTSWVVSS  214 (241)
T ss_dssp             SSSSCCCSBCEEEEEEBCCHHHHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEES-SSEEEEEEEEECCBC
T ss_pred             cCCCCCCCcceEEEEEeechhHhhhhhhcccccccccceeEeecccCCcCcccCCCCcceEEec-CCEEEEEEEEEEEcC
Confidence            7776667889999999999999998876432 34567777776566777899999999999875 4578999998753  


Q ss_pred             --CCCCCCCCeEEEeCcchHHHHHhhh
Q psy17330        159 --KCAEVGFPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       159 --~c~~~~~p~vft~v~~~~~WI~~~i  183 (184)
                        .|+..+.|++||||++|.+||+++.
T Consensus       215 g~~~~~~~~p~vft~V~~y~~WI~~n~  241 (241)
T d1m9ua_         215 GLGACLPDYPSVYTRVSAYLGWIGDNS  241 (241)
T ss_dssp             TTSCBCTTSCEEEEEGGGTHHHHHHHC
T ss_pred             CCCCCCCCCCEEEEEHHHhHHHHHHcc
Confidence              4666678999999999999999863

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.95  E-value=1.3e-27  Score=177.96  Aligned_cols=152  Identities=27%  Similarity=0.495  Sum_probs=118.0

Q ss_pred             CceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCC
Q psy17330          8 DSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGG   84 (184)
Q Consensus         8 ~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~   84 (184)
                      +..+.+||+|+.   ++|||||||++++.              +     |+|++|..    ....+..+.+.||+.....
T Consensus        65 i~~~~i~~~~~~~~~~~DIAllkL~~~~~--------------~-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~  121 (223)
T d1os8a_          65 VRSTKVLQAPGYNGTGKDWALIKLAQPIN--------------Q-----PTLKIATT----TAYNQGTFTVAGWGANREG  121 (223)
T ss_dssp             EEEEEEEECTTCSSSSCCCEEEEESSCCC--------------S-----CCCEECCS----STTSSSEEEEEESSCSSTT
T ss_pred             ceeeeeeecccccccceeeeeeeeeeeee--------------c-----cccccccc----ccccccceEEeeccccccc
Confidence            445666776644   56999999999876              3     45533322    2356788999999987766


Q ss_pred             CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEe-eecCCCCCCCCCCCCCeeEEE-eCCeEEEEEEEEecCCCCC
Q psy17330         85 GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCA-GVLSGGKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~-~~~~~~~~~c~~d~G~pl~~~-~~~~~~L~Gi~s~~~~c~~  162 (184)
                      ......++...+++++.++|+..+..  ......++|. .......+.|.+|+|+||+++ ..++|+|+||.||+..|+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~~~~~~~~~~~~~~~~~~c~~~~G~pl~~~~~~~~~~L~Gi~s~~~~c~~  199 (223)
T d1os8a_         122 GSQQRYLLKANVPFVSDAACRSAYGN--ELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCAR  199 (223)
T ss_dssp             CCCCSBCEEEEEEEECHHHHHHHHGG--GSCTTTEEEESCTTTCCCBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSC
T ss_pred             cccccccccceeeEeCHHHhhhhhcC--CCccCcceeeeccccCCcCccccccccceEEecCCCeEEEEEEEEeCCCCCC
Confidence            66677899999999999999887762  2334444444 433456678999999999997 4569999999999999988


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|++||||++|.+||+++|+
T Consensus       200 ~~~p~vft~V~~y~~WI~~~~k  221 (223)
T d1os8a_         200 PGYPGVYTEVSTFASAIASAAR  221 (223)
T ss_dssp             TTCCEEEEEHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEHHHHHHHHHHHHh
Confidence            8899999999999999999885

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.8e-27  Score=173.50  Aligned_cols=145  Identities=23%  Similarity=0.314  Sum_probs=118.9

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      ++.+++.||.|+.   .+|||||||++++.              ++++++|+| ||..+  .....+..+++.||+....
T Consensus        73 ~~~~~~~~~~~~~~~~~~diAll~L~~~~~--------------~~~~v~pic-l~~~~--~~~~~~~~~~~~G~~~~~~  135 (221)
T d1fuja_          73 FSVAQVFLNNYDAENKLNDILLIQLSSPAN--------------LSASVATVQ-LPQQD--QPVPHGTQCLAMGWGRVGA  135 (221)
T ss_dssp             EEEEEEEECCCBTTTTBCCCEEEEESSCCC--------------CCSSCCCCB-CCCTT--CCCCTTCEEEEEESSBSCS
T ss_pred             eeeeeEEEeeecCCCCccEEEEEEcccccc--------------ccceEEEEE-ecccc--cccCCCceEEEeccccccc
Confidence            4577899999955   56999999999999              999999999 77655  3456788999999999887


Q ss_pred             CCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC-CCCC
Q psy17330         84 GGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAE  162 (184)
Q Consensus        84 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~-~c~~  162 (184)
                      .+.....++...+++.+...|..           ...|.. .....+.|.+|+||||+++.    +|+||.||+. +|+.
T Consensus       136 ~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~c~gd~G~pl~~~~----~l~Gi~s~~~~gc~~  199 (221)
T d1fuja_         136 HDPPAQVLQELNVTVVTFFCRPH-----------NICTFV-PRRKAGICFGDSGGPLICDG----IIQGIDSFVIWGCAT  199 (221)
T ss_dssp             SSCBCSBCEEEEEEEECTTCCTT-----------EEEEEC-SSSSCBCCTTCTTCEEEETT----EEEEEEEECSSSTTC
T ss_pred             ccccCccceeeeeeeeeeccccc-----------cceecc-ccCCCceeCCccCCCEEEeC----EEEEEEEEEECCCCC
Confidence            77777888888888876443322           223433 46777899999999999975    9999999975 6887


Q ss_pred             CCCCeEEEeCcchHHHHHhhhC
Q psy17330        163 VGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       163 ~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      .+.|.+||||+.|++||+++||
T Consensus       200 ~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1fuja_         200 RLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             SSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCeEEEEHHHhHHHHHHHhC
Confidence            7889999999999999999987

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.2e-27  Score=173.38  Aligned_cols=144  Identities=22%  Similarity=0.344  Sum_probs=118.0

Q ss_pred             CceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCC
Q psy17330          8 DSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGG   84 (184)
Q Consensus         8 ~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~   84 (184)
                      +..++.||.|+.   .+|||||+|++|+.              ++.+++||| +|..+  ........+++.||+.....
T Consensus        71 ~~~~~~~~~~~~~~~~~diall~l~~~~~--------------~~~~~~pi~-l~~~~--~~~~~~~~~~~~g~~~~~~~  133 (218)
T d2z7fe1          71 AVQRIFENGYDPVNLLNDIVILQLNGSAT--------------INANVQVAQ-LPAQG--RRLGNGVQCLAMGWGLLGRN  133 (218)
T ss_dssp             EEEEEEESCCBTTTTBSCCEEEEESSCCC--------------CSSSCCCCC-CCCTT--CCCCTTCEEEEEESSBCSSS
T ss_pred             eeeeEeeeccccccccceEEEeeccccce--------------eeeeeeeee-eccCc--cccCCCcEEEEeccceeecc
Confidence            356678999965   56999999999999              999999999 77655  34456789999999988777


Q ss_pred             CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC-CCCCC
Q psy17330         85 GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAEV  163 (184)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~-~c~~~  163 (184)
                      +.....|+...+++.+ +.|..           .+.|+.......+.|.+|+||||+++.    +|+||.||+. +|+..
T Consensus       134 ~~~~~~l~~~~~~~~~-~~c~~-----------~~~~~~~~~~~~~~C~gdsG~Pl~~~~----~l~GI~s~~~~~c~~~  197 (218)
T d2z7fe1         134 RGIASVLQELNVTVVT-SLCRR-----------SNVCTLVRGRQAGVCFGDSGSPLVCNG----LIHGIASFVRGGCASG  197 (218)
T ss_dssp             CCBCSBCEEEEEEEEC-TTCCT-----------TSEEEECTTSCCBCCTTCTTCEEEETT----EEEEEEEEESSSTTCS
T ss_pred             cccccceeEEEecccc-cccce-----------eeeeeeecCcccCccccccCCCEEECC----EEEEEEEEecCCCCCC
Confidence            6667789999998886 45643           356766455666789999999999965    9999999975 47777


Q ss_pred             CCCeEEEeCcchHHHHHhhhC
Q psy17330        164 GFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       164 ~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ..|.+||||++|++||+++||
T Consensus       198 ~~p~vft~v~~~~~WI~~~i~  218 (218)
T d2z7fe1         198 LYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             SSCEEEEEGGGGHHHHHHHHC
T ss_pred             CcCEEEEEhHHhHHHHHHHhC
Confidence            789999999999999999986

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=99.95  E-value=4e-27  Score=176.00  Aligned_cols=153  Identities=30%  Similarity=0.539  Sum_probs=123.8

Q ss_pred             CCceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCC
Q psy17330          7 PDSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPG   83 (184)
Q Consensus         7 ~~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~   83 (184)
                      +....+.||.|+.   .+|||||||++|+.              ++.+++|+| ||...    ...+..+.++||+....
T Consensus        68 ~~~~~~~~~~~~~~~~~~DiaLl~L~~~v~--------------~~~~i~pic-l~~~~----~~~~~~~~~~g~~~~~~  128 (234)
T d1op0a_          68 PKEKFICPNKNNNEVLDKDIMLIKLDKPIS--------------NSKHIAPLS-LPSSP----PSVGSVCRIMGWGSITP  128 (234)
T ss_dssp             EEEEEECTTCCTTCTTSSCCEEEEESSCCC--------------CBTTBCCCC-CCSSC----CCTTCEEEEEESSCSSS
T ss_pred             eeeeccccccccccccchhhhhhhcCCcee--------------ccceeeccc-ccccC----cccceEEEEeeeccccc
Confidence            3456678888854   66999999999998              999999999 77533    34688999999997665


Q ss_pred             CC-CCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC-CCC
Q psy17330         84 GG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCA  161 (184)
Q Consensus        84 ~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~-~c~  161 (184)
                      .. .....++...+++++.+.|...+.  .......++|........+.|.+|+|+||+++.    +|+||.||+. .|+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~G~Pl~~~~----~l~Gi~S~g~~~c~  202 (234)
T d1op0a_         129 VKETFPDVPYCANINLLDHAVCQAGYP--ELLAEYRTLCAGIVQGGKDTCGGDSGGPLICNG----QFQGIVSYGAHPCG  202 (234)
T ss_dssp             SSCCCCSSCEEEEEEEECHHHHHHHCT--TCCTTSCEEEEECTTCCCBCCTTCTTCEEEETT----EEEEEEEECCSSTT
T ss_pred             cccccccccccccceEechHHhccccc--CcceeeeeeeecccccccccccCCCCceEEEcC----EEEEEEEEcCCCCC
Confidence            43 456678999999999999988775  233445566665556777899999999999964    9999999986 477


Q ss_pred             CCCCCeEEEeCcchHHHHHhhhC
Q psy17330        162 EVGFPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       162 ~~~~p~vft~v~~~~~WI~~~i~  184 (184)
                      ....|.+||||+.|++||+++|+
T Consensus       203 ~~~~p~vft~v~~y~~WI~~~i~  225 (234)
T d1op0a_         203 QGPKPGIYTNVFDYTDWIQRNIA  225 (234)
T ss_dssp             CTTSCEEEEESGGGHHHHHHHHH
T ss_pred             CCCCCeEEEEHHHHHHHHHHHHh
Confidence            77889999999999999999874

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.9e-27  Score=173.03  Aligned_cols=144  Identities=26%  Similarity=0.378  Sum_probs=119.6

Q ss_pred             CceEEEcCCCCC---CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCC
Q psy17330          8 DSSLHVIPSISD---DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGG   84 (184)
Q Consensus         8 ~~~i~~Hp~y~~---~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~   84 (184)
                      +.++++||.|+.   .+|||||||++++.              +..++.|+| ++...  .....+..+.+.|||.....
T Consensus        72 ~~~~~~~~~~~~~~~~~DIAll~L~~~i~--------------~~~~~~~~~-l~~~~--~~~~~~~~~~~~g~~~~~~~  134 (225)
T d1a7sa_          72 SISSMSENGYDPQQNLNDLMLLQLDREAN--------------LTSSVTILP-LPLQN--ATVEAGTRCQVAGWGSQRSG  134 (225)
T ss_dssp             EEEEEECSSCBTTTTBSCCEEEEESSCCC--------------CBTTBCCCC-CCCTT--CCCCTTCEEEEEESCCSSTT
T ss_pred             eeeeeeeeeccccccccccchhhcCCccc--------------ccccceeEE-eeccc--cccCCCceeEeccccccccc
Confidence            356788999955   56999999999998              899999999 55433  34566789999999998777


Q ss_pred             CCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCC
Q psy17330         85 GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVG  164 (184)
Q Consensus        85 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~  164 (184)
                      +.....++...+++++.++|....           .|+.........|.+|+||||+++.    +|+||.||+..|+. .
T Consensus       135 ~~~~~~l~~~~~~~~~~~~C~~~~-----------~~~~~~~~~~~~c~gdsG~Pl~~~~----~l~Gi~S~~~~~c~-~  198 (225)
T d1a7sa_         135 GRLSRFPRFVNVTVTPEDQCRPNN-----------VCTGVLTRRGGICNGDGGTPLVCEG----LAHGVASFSLGPCG-R  198 (225)
T ss_dssp             CCCCSSCEEEEEEECCGGGSCTTE-----------EEEECSSSSCBCCTTCTTCEEEETT----EEEEEEEEECSSTT-S
T ss_pred             cccccceeEEEEEEeehhhccccc-----------ceeeecccccccccCCCCCCEEEeC----EEEEEEEECCCCCC-C
Confidence            767788999999999999996543           4554456677899999999999964    99999999987665 4


Q ss_pred             CCeEEEeCcchHHHHHhhhC
Q psy17330        165 FPGVYTRVTNYIQWIADNIS  184 (184)
Q Consensus       165 ~p~vft~v~~~~~WI~~~i~  184 (184)
                      .|.+||||++|.+||+++|+
T Consensus       199 ~p~v~t~v~~y~~WI~~~i~  218 (225)
T d1a7sa_         199 GPDFFTRVALFRDWIDGVLN  218 (225)
T ss_dssp             SCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCEEEEHHHHHHHHHHHHC
Confidence            59999999999999999873

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.94  E-value=1.1e-26  Score=173.53  Aligned_cols=139  Identities=25%  Similarity=0.381  Sum_probs=116.8

Q ss_pred             CCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCC-CCCcCceEEEEEe
Q psy17330         20 DSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGG-PLSPKLRHVQISV   98 (184)
Q Consensus        20 ~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~   98 (184)
                      .+|||||||++|+.              +++.++|+| ||..    ....+..+++.|||...... .....|+...+++
T Consensus        94 ~~Diali~L~~pv~--------------~~~~v~p~~-l~~~----~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~  154 (237)
T d1gvza_          94 SHDLMLLRLAQPAR--------------ITDAVKILD-LPTQ----EPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRL  154 (237)
T ss_dssp             TTCCEEEEESSCCC--------------CBTTBCCCC-CCSS----CCCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEE
T ss_pred             ccceEEEEECCcee--------------ccccccccc-cccc----ccccceeEEEEeeeeeccccccccceeeEEEEEe
Confidence            56999999999998              999999999 7743    34567889999999875543 3456789999999


Q ss_pred             eCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC-CCCCCCCeEEEeCcchHH
Q psy17330         99 VDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQ  177 (184)
Q Consensus        99 ~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~-c~~~~~p~vft~v~~~~~  177 (184)
                      ++.+.|...++   ....+..+|..........|.+|+||||+++.    +|+||.||+.. |+..+.|.+||||+.|++
T Consensus       155 ~~~~~C~~~~~---~~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~~----~l~Gv~s~g~~~c~~~~~p~v~t~v~~y~~  227 (237)
T d1gvza_         155 QSNEKCARAYP---EKMTEFVLCATHRDDSGSICLGDSGGALICDG----VFQGITSWGYSECADFNDNFVFTKVMPHKK  227 (237)
T ss_dssp             ECGGGGCSSCG---GGCCTTEEEEECSSTTCEECGGGTTCEEEETT----EEEEEECCCSSSCEETTTSCCEEESGGGHH
T ss_pred             ecHHHHHhhcc---cccccccccceecccccccccCCCCCcEEEcC----EEEEEEEeccCCCCCCCCCeEEEEHHHHHH
Confidence            99999999877   45667778877566777899999999999965    99999999875 666678999999999999


Q ss_pred             HHHhhhC
Q psy17330        178 WIADNIS  184 (184)
Q Consensus       178 WI~~~i~  184 (184)
                      ||+++|+
T Consensus       228 WI~~~i~  234 (237)
T d1gvza_         228 WIKETIE  234 (237)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=99.50  E-value=2.5e-16  Score=115.10  Aligned_cols=132  Identities=12%  Similarity=0.095  Sum_probs=83.9

Q ss_pred             CCceEEEcCCCC----CCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccC
Q psy17330          7 PDSSLHVIPSIS----DDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVP   82 (184)
Q Consensus         7 ~~~~i~~Hp~y~----~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~   82 (184)
                      ++.+++.||.|.    .++|+|||||+.++.              .  ...+++ ++.    .....+..+++.||+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~DiAll~l~~~~~--------------~--~~~~~~-~~~----~~~~~~~~~~~~G~~~~~  136 (215)
T d1p3ca_          78 NMTEFYVPSGYINTGASQYDFAVIKTDTNIG--------------N--TVGYRS-IRQ----VTNLTGTTIKISGYPGDK  136 (215)
T ss_dssp             EEEEEECCHHHHHHCCGGGCCEEEEESSCHH--------------H--HHCCCC-BCC----CSCCTTCEEEEEECCHHH
T ss_pred             EEeEEEEecccccCCCccceEEEEEeccCCC--------------c--cccccc-ccc----ccccCCceeEEEcCCCCc
Confidence            567788999873    356999999998876              1  223444 332    234568999999998643


Q ss_pred             CCCCCCcCceEEEEEeeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         83 GGGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      ........+............|.               +.    .....|.||+||||+.   ..++|+||.|++..|+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~----~~~~~~~G~SGgPl~~---~~~~lvGi~s~g~~~~~  194 (215)
T d1p3ca_         137 MRSTGKVSQWEMSGSVTREDTNL---------------AY----YTIDTFSGNSGSAMLD---QNQQIVGVHNAGYSNGT  194 (215)
T ss_dssp             HHHHSSCCCEEEEEECCEECSSE---------------EE----ECCCCCTTCTTCEEEC---TTSCEEEECCEEEGGGT
T ss_pred             CCCcccceeeEeeeccccccccc---------------ce----eecccCCCCccCeEEC---CCCEEEEEEEeccCCCC
Confidence            32211112222211111111111               11    1235799999999994   34589999999877654


Q ss_pred             C-CCCeEEEeCcchHHHHHh
Q psy17330        163 V-GFPGVYTRVTNYIQWIAD  181 (184)
Q Consensus       163 ~-~~p~vft~v~~~~~WI~~  181 (184)
                      . ..+.+|++|..|++||++
T Consensus       195 ~~~~~~i~~~v~~~i~wi~~  214 (215)
T d1p3ca_         195 INGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             EEEEEBCCHHHHHHHHHHHT
T ss_pred             CCCCeEEEeEHHHHHHHHHc
Confidence            2 247789999999999986

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.48  E-value=4.5e-15  Score=112.03  Aligned_cols=79  Identities=20%  Similarity=0.291  Sum_probs=56.8

Q ss_pred             eCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecC-CCC--CCCCCeEEEeCcch
Q psy17330         99 VDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCA--EVGFPGVYTRVTNY  175 (184)
Q Consensus        99 ~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~-~c~--~~~~p~vft~v~~~  175 (184)
                      +....|......+...+...++|+.........|+||+||||+++.+   .++|++|++. .|.  ..+.|++||||+.|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~c~GDSGGPL~~~~g---~~vGvvsgg~s~c~~c~~~~p~vYtrV~~~  233 (263)
T d1arba_         157 ISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSPEK---RVLGQLHGGPSSCSATGTNRSDQYGRVFTS  233 (263)
T ss_dssp             EEEECSCCEEECTTSSSCSSEEEEECCTTSCCCCTTCTTCEEECTTS---CEEEEEEECSCCTTCCGGGSEEEEEEHHHH
T ss_pred             eecccccchhhccCCCCCccEEEEEecCCCccccCCCCcceEEecCC---CEEEEEEEEEeCCcCCCCCCCceEEEEEEe
Confidence            33444444444345677889999986677778999999999998533   5888888875 232  23679999999988


Q ss_pred             HHHHH
Q psy17330        176 IQWIA  180 (184)
Q Consensus       176 ~~WI~  180 (184)
                      ..||.
T Consensus       234 ~~~~~  238 (263)
T d1arba_         234 WTGGG  238 (263)
T ss_dssp             HHTTS
T ss_pred             eccCC
Confidence            65553

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=99.07  E-value=2.7e-10  Score=80.43  Aligned_cols=57  Identities=21%  Similarity=0.215  Sum_probs=46.2

Q ss_pred             eEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHHHH
Q psy17330        119 ILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI  179 (184)
Q Consensus       119 ~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~WI  179 (184)
                      ..|..........|.|||||||++.+    .++||.|++..|+....+.+|++|+.++++.
T Consensus       126 ~~~~~~~~~~~~~~~GDSGgPl~~~~----~~vGi~s~g~~~~~~~~~~~~~pv~~~l~~~  182 (187)
T d1hpga_         126 GPVYNMVRTTACSAGGDSGGAHFAGS----VALGIHSGSSGCSGTAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             EEEEEEEEECCCCCTTCTTCEEEETT----EEEEEEEEESCCBTTBCCCEEEEHHHHHHHH
T ss_pred             ccEeccEEcCcccccCCCCCeEEECC----EEEEEEEEEecCCCCCCCEEEEEHHHHHHHh
Confidence            34443234556789999999999865    7999999999988777889999999998875

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.49  E-value=7e-07  Score=64.05  Aligned_cols=121  Identities=10%  Similarity=0.025  Sum_probs=66.4

Q ss_pred             CCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEEe
Q psy17330         19 DDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQISV   98 (184)
Q Consensus        19 ~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~   98 (184)
                      ...|+|||+|+.+..              ......+.+ .+..........+....+.||......    .........+
T Consensus        90 ~~~D~all~l~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~~~~----~~~~~~~~~~  150 (216)
T d2o8la1          90 GEGDLAIVKFSPNEQ--------------NKHIGEVVK-PATMSNNAETQTNQNITVTGYPGDKPV----ATMWESKGKI  150 (216)
T ss_dssp             SSSCCEEEEECCCTT--------------SCCTTTSSC-CCEECCCTTCCTTCEEEEEECCTTSST----TCEEEEEEEE
T ss_pred             cCCceEEEEeccccc--------------cccccccee-eeeccccccccCCceeEEEEccCCCce----eeEEEEeeEE
Confidence            356999999998776              222222222 221122223445677778888642211    1122222222


Q ss_pred             eCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCc-chHH
Q psy17330         99 VDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT-NYIQ  177 (184)
Q Consensus        99 ~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~-~~~~  177 (184)
                      ...              ....+...     ...|.|++||||+.. +  ..++||.+++..+..    ...+++. ...+
T Consensus       151 ~~~--------------~~~~l~~~-----~~~~~G~SGgPv~~~-~--g~vVGI~s~g~~~~~----~~~v~~~~~~~~  204 (216)
T d2o8la1         151 TYL--------------KGEAMQYD-----LSTTGGNSGSPVFNE-K--NEVIGIHWGGVPNEF----NGAVFINENVRN  204 (216)
T ss_dssp             EEE--------------ETTEEEES-----CCCCTTCTTCEEECT-T--SCEEEEEEEEETTTE----EEEEECCHHHHH
T ss_pred             EEc--------------cCCeEEEe-----cCcCCCCCCCcEECC-C--CEEEEEEeeecCCCC----cceEecCHHHHH
Confidence            221              22233222     356899999999943 2  379999998754332    2334444 5789


Q ss_pred             HHHhhhC
Q psy17330        178 WIADNIS  184 (184)
Q Consensus       178 WI~~~i~  184 (184)
                      ||+++|+
T Consensus       205 ~i~~~i~  211 (216)
T d2o8la1         205 FLKQNIE  211 (216)
T ss_dssp             HHHHHCT
T ss_pred             HHHHhhh
Confidence            9999874

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.37  E-value=1.3e-06  Score=63.92  Aligned_cols=103  Identities=13%  Similarity=0.099  Sum_probs=58.1

Q ss_pred             CCCCCeEEEEeceecccCcccccccCCcccCCCCCCCcccCCCCCceeccCCCCeeeeEeecccCCCCCCCcCceEEEEE
Q psy17330         18 SDDSHYQILHLEQRKKSKACKPSQLGGVARLPGPAGPGCSLPWGEFRLDLSSGGLRGPGCLGSVPGGGPLSPKLRHVQIS   97 (184)
Q Consensus        18 ~~~~DiAllkL~~~~~~~~~~~~~l~~~~~~~~~v~piCllp~~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~   97 (184)
                      ..+.|||||+|+.+.....           +...+.|+. |...+   ....|..++++||....    ....+......
T Consensus       116 ~~~~D~All~l~~~~~~~~-----------~~~~~~~~~-l~~s~---~~~~G~~v~~~GyP~~~----~~~~~~~~~~~  176 (242)
T d1agja_         116 GAGVDLALIRLKPDQNGVS-----------LGDKISPAK-IGTSN---DLKDGDKLELIGYPFDH----KVNQMHRSEIE  176 (242)
T ss_dssp             CTTSCCEEEEECCCTTSCC-----------HHHHSCCCE-ECCST---TCCTTCEEEEEECCTTT----STTCCEEEEEE
T ss_pred             CCcCcEEEEEecccccccc-----------ccccCccee-ecccc---cccCCcEEEEEEcCCCC----ccceeEecccc
Confidence            4456999999986643110           223456666 44322   35678899999996421    11222222222


Q ss_pred             eeCcccccccccccCCCCCCCeEEeeecCCCCCCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCC
Q psy17330         98 VVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  162 (184)
Q Consensus        98 ~~~~~~C~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~  162 (184)
                      +....               ..++..     ...+.|+|||||+.. +  +.|+||.+++..+..
T Consensus       177 ~~~~~---------------~~~~~~-----~~~~~G~SGgPl~~~-~--g~vVGI~~~~~~~~~  218 (242)
T d1agja_         177 LTTLS---------------RGLRYY-----GFTVPGNSGSGIFNS-N--GELVGIHSSKVSHLD  218 (242)
T ss_dssp             ECCGG---------------GSEEEE-----CCCCGGGTTCEEECT-T--SEEEEEEEEEEECSS
T ss_pred             ccccc---------------ccEEEe-----cccCCccCCCcEECC-C--CeEEEEEeEeecCCC
Confidence            21111               112222     245779999999843 2  379999998765543

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.02  E-value=1e-05  Score=56.44  Aligned_cols=45  Identities=29%  Similarity=0.342  Sum_probs=36.1

Q ss_pred             CCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHHHH
Q psy17330        131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI  179 (184)
Q Consensus       131 ~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~WI  179 (184)
                      ..+|||||||+..+    .++||++.+..++......+|++|..+++++
T Consensus       132 ~~~GdSGGPv~~~~----~~vGi~sgg~~~~~~~~~~~~~pv~~~l~~~  176 (181)
T d2sgaa_         132 AQPGDSGGSLFAGS----TALGLTSGGSGNCRTGGTTFYQPVTEALSAY  176 (181)
T ss_dssp             CCTTCTTCEEEETT----EEEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             ccCCCcCCeeEECC----EEEEEEEEecCCCCCCceEEEEEHHHHHHHh
Confidence            34799999999744    7999999987766544568999999888775

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=97.29  E-value=0.00075  Score=46.69  Aligned_cols=41  Identities=34%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             CCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcch
Q psy17330        131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  175 (184)
Q Consensus       131 ~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~  175 (184)
                      ...|||||||+..+    .++||.+.+..++......+|+.|...
T Consensus       136 ~~~GdSGGPv~~~~----~~vGi~~~g~~~~~~~~~~~~~Pi~~~  176 (185)
T d2qaaa1         136 AEPGDSGGPLYSGT----RAIGLTSGGSGNCSSGGTTFFQPVTEA  176 (185)
T ss_dssp             CCTTCTTCEEEETT----EEEEEEEEEEEETTTEEEEEEEEHHHH
T ss_pred             ecCCcccceeEECC----EEEEEEEEeecCCCCCceEEEEEHHHH
Confidence            44799999999743    799999987665543334677776544

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=97.20  E-value=0.0035  Score=43.54  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=31.6

Q ss_pred             CCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHHHHHh
Q psy17330        132 CGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD  181 (184)
Q Consensus       132 c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~WI~~  181 (184)
                      -.|++||||+...+....++||.+.|.+.     -+..+.|.  .++|++
T Consensus       153 ~~G~cGgplv~~~~~~~~IvGih~aG~~g-----~G~a~~it--~e~i~~  195 (199)
T d2bhga1         153 RAGYAGGAVLAKDGADTFIVGTHSAGGNG-----VGYCSCVS--RSMLQK  195 (199)
T ss_dssp             CTTCTTCEEEEEETTEEEEEEEEEEEETT-----EEEEEECC--HHHHHH
T ss_pred             CCCCcCCeEEEecCCeEEEEEEEeCCCCC-----EEEEEEcc--HHHHHH
Confidence            35789999998887888999999987431     25556664  566654

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.71  E-value=0.003  Score=44.67  Aligned_cols=51  Identities=22%  Similarity=0.131  Sum_probs=31.3

Q ss_pred             CCCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCC--------CCeEEEeCcchHHHHHhhh
Q psy17330        130 DSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVG--------FPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       130 ~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~--------~p~vft~v~~~~~WI~~~i  183 (184)
                      ..-.|.+||||+... |  .++||.+.........        .......+....+++++.+
T Consensus       158 ~i~~G~SGGPv~n~~-G--~vVGI~~~~~~~~~~~~~~~~~~~gi~faIP~~~v~~~l~~l~  216 (221)
T d2z9ia2         158 AINPGNSGGALVNMN-A--QLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELI  216 (221)
T ss_dssp             CCCTTCTTEEEECTT-S--EEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHH
T ss_pred             cccCCCCCCccCcCC-C--EEEEEEEEEecccccccccccCccCeEEEEEHHHHHHHHHHHH
Confidence            345678999999764 3  8999998754432111        0134566666677776543

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.57  E-value=0.01  Score=42.18  Aligned_cols=49  Identities=20%  Similarity=0.263  Sum_probs=33.2

Q ss_pred             CCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeCcchHHHHHhhh
Q psy17330        132 CGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       132 c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v~~~~~WI~~~i  183 (184)
                      -.|++||||+...+   .++||.+....-.....-.....+....+++++.+
T Consensus       179 ~~G~SGGPl~n~~G---~VIGI~~~~~~~~~~~~i~faIp~~~i~~~l~~l~  227 (228)
T d1l1ja_         179 NPGNSGGPLLNIHG---EVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTIL  227 (228)
T ss_dssp             CTTTTTSEEECSSS---EEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGC
T ss_pred             CCCCCCCcEECCCC---EEEEEEEEEecCCCCCCEEEEEEHHHHHHHHHHhc
Confidence            46899999996543   89999976533222112345677788888887765

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=96.55  E-value=0.012  Score=41.66  Aligned_cols=47  Identities=23%  Similarity=0.505  Sum_probs=33.0

Q ss_pred             CCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCCCCeEEEeC-cchHHHHHhh
Q psy17330        131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV-TNYIQWIADN  182 (184)
Q Consensus       131 ~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~v-~~~~~WI~~~  182 (184)
                      .-.|++||||+-..+|  .++||.+.+..-..   -..|+-+ ..|.++|.+.
T Consensus       144 t~~GnSGGPlvd~~dG--~VVGIhs~~~~~~~---~n~~~~i~~~~~~~l~~~  191 (219)
T d1lvmb_         144 TKDGQCGSPLVSTRDG--FIVGIHSASNFTNT---NNYFTSVPKNFMELLTNQ  191 (219)
T ss_dssp             CCTTCTTCEEEETTTC--CEEEEEEEEETTSS---SEEEEECCTTHHHHHHCG
T ss_pred             cCCCCCCCceEEcCCC--EEEEEEEeeecccc---eEEEEecCHHHHHHHhhc
Confidence            4568999999985433  89999998644322   3567777 4477777653

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.46  E-value=0.0076  Score=43.36  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=19.5

Q ss_pred             CCCCCCCCeeEEEeCCeEEEEEEEEecCC
Q psy17330        131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKK  159 (184)
Q Consensus       131 ~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~  159 (184)
                      ...|+|||||+-. +|  .++||.+.+.+
T Consensus       181 ~~~G~SGgPv~n~-~G--~vVGI~~~g~~  206 (246)
T d1qtfa_         181 TEVGNSGSGIFNL-KG--ELIGIHSGKGG  206 (246)
T ss_dssp             CCGGGTTCEEECT-TC--CEEEEEEEEET
T ss_pred             ccCCCCCCcEECC-CC--eEEEEEecccC
Confidence            4568999999943 23  79999987644

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=96.31  E-value=0.00057  Score=47.65  Aligned_cols=29  Identities=31%  Similarity=0.344  Sum_probs=22.3

Q ss_pred             CCCCCCCCCCCeeEEEeCCeEEEEEEEEecCC
Q psy17330        128 GKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  159 (184)
Q Consensus       128 ~~~~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~  159 (184)
                      ....++||+|||++...+   .++||.|.+..
T Consensus       135 ~~~~~~GdSGGPv~~~~g---~vvGI~sgg~~  163 (198)
T d2h5ca1         135 NACMGRGDSGGSWITSAG---QAQGVMSGGNV  163 (198)
T ss_dssp             CSCCBTTCTTCEEECTTC---BEEEEEEEECC
T ss_pred             eeeeecccccccEEcCCC---EEEEEEccccc
Confidence            345678999999997533   69999998653

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.042  Score=39.47  Aligned_cols=50  Identities=14%  Similarity=0.011  Sum_probs=32.0

Q ss_pred             CCCCCCCCeeEEEeCCeEEEEEEEEecCCCCCC-CCCeEEEeCcchHHHHHhhh
Q psy17330        131 SCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV-GFPGVYTRVTNYIQWIADNI  183 (184)
Q Consensus       131 ~c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~-~~p~vft~v~~~~~WI~~~i  183 (184)
                      .-.|.+||||+...+   .|+||.+........ ........+....+++++.+
T Consensus       195 i~~GnSGGPl~n~~G---~vIGI~t~~~~~~~~~~gi~faIP~~~~~~~~~~l~  245 (249)
T d1ky9a2         195 INRGNAGGALVNLNG---ELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMV  245 (249)
T ss_dssp             CTTSCCCSEEECTTS---CEEEEEECSSTTSCCCSSSEEEEEHHHHHHHHHHHH
T ss_pred             ecCCCCCceEECCCC---EEEEEEEEEeccCCCcccEEEEEEHHHHHHHHHHHH
Confidence            345789999986543   799999876443221 11345566666667776654

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.068  Score=37.03  Aligned_cols=48  Identities=19%  Similarity=0.217  Sum_probs=27.4

Q ss_pred             CCCCCCCeeEEEeCCeEEEEEEEEecCCCCCCC----CCeEEEeCcchHHHHHhh
Q psy17330        132 CGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVG----FPGVYTRVTNYIQWIADN  182 (184)
Q Consensus       132 c~~d~G~pl~~~~~~~~~L~Gi~s~~~~c~~~~----~p~vft~v~~~~~WI~~~  182 (184)
                      -.|++||||+...+   .++||.+.........    .......+....+++++.
T Consensus       155 ~~G~SGGPv~n~~G---~vVGI~~~~~~~~~~~~~~~~i~faIP~~~v~~~l~~l  206 (210)
T d2qf3a1         155 NHGNSGGALVNSLG---ELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKL  206 (210)
T ss_dssp             CTTCTTCEEEETTC---CEEEEEEEEC--------CCSCEEEEEHHHHHHHHHHH
T ss_pred             EeccCCCceEeecC---EEEEEEEEEeeccCCCccccceEEEEEHHHHHHHHHHH
Confidence            45789999998743   7999998765432111    112334555555555543

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.031  Score=38.70  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=18.8

Q ss_pred             CCCCCCCeeEEEeCCeEEEEEEEEecC
Q psy17330        132 CGGDSGGPLMYPLDTKYYIIGVVSYGK  158 (184)
Q Consensus       132 c~~d~G~pl~~~~~~~~~L~Gi~s~~~  158 (184)
                      -.|++||||+... |  .++||.+...
T Consensus       164 ~~G~SGGPv~d~~-G--~vVGI~s~~~  187 (205)
T d1lcya2         164 DFGNAGGPLVNLD-G--EVIGVNTMKV  187 (205)
T ss_dssp             STTTTTSEEEETT-S--CEEEEEEEEE
T ss_pred             CCCCCcCcEECCC-C--EEEEEEeeEc
Confidence            3589999998764 3  7999998754

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Human rhinovirus 2 [TaxId: 12130]

Probab=90.92  E-value=0.92  Score=30.48  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=19.2

Q ss_pred             CCCCCCCeeEEEeCCeEEEEEEEEecCC
Q psy17330        132 CGGDSGGPLMYPLDTKYYIIGVVSYGKK  159 (184)
Q Consensus       132 c~~d~G~pl~~~~~~~~~L~Gi~s~~~~  159 (184)
                      -.|+.|+||+.++    .++||.+.|.+
T Consensus       143 ~~g~cg~~~~~~~----~i~G~h~~g~~  166 (180)
T d1cqqa_         143 KSGYCGGVLYKIG----QVLGIHVGGNG  166 (180)
T ss_dssp             CTTCTTCEEEETT----EEEEEEEEECS
T ss_pred             CCcccCCeEEECC----CEEEEEeccCC
Confidence            3477899999765    79999998754