Psyllid ID: psy17502

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
Protein Sequence
LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVYC
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccccEEEccccHHHHHHccccEEEEEEEccccHHHHHcHHHHHHHHHHcccccEEEEEEccccccHHHHcccccccEEEEEccccccccccccccHHHHHHHHHHHHccccccccccccccccccEEEcccHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHcccccccEEEEccccccccccccccccccccHHHHHHHHHHccccccccccEEEccHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHccccccccEEEEEEccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccccccccEEEEccccHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHcccccccEEEEEccccccccccccccHHHHHHHHHHHHcccccccccccccccccccEEcccccHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHcccccccEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHcccccccEEEcccHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHcccccccccEEEEEcccccccccccccccHHHHHHHHHHHHccccccccccccccccEEEEccccccccccccccccccccccccEEEEEcccHHHHEEcccccEEEEEEcccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
LLLTVASVhclypsysdviklttsnfddkviksdEVWIVEYyapwcghcqsFKDEYMKLATALKGVVKvgavnadeekslssshgvtgfptvkifsdkrnptpyqgartADAIIDVALEAIRQKVkggksggrkgssKAVVELTDsnfeklvynsddiwlveffapwcghcknlepHWEKAASELEGKVKLGAVDATVHQRIAGefnirgyptikffspgsrsasdaqeynggrtsQDIVTWALNkytenvpppeikqiVSEATFkeacedhplCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEavaqpdlenvleiggfgyPAMAVLNAKKMKYsllkgpfsydgINEFLRdlsygrghtapvkgaalpqinqvdawdgkdgelpqeedidlsdvdledlpkdefnfddkviksdEVWIVEYyapwcghcqsFKDEYMKLATALKVYC
Flexible Loop (DISEMBL)
LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAdeekslssshgvtgfptvkifsdkrnPTPYQGARTADAIIDVALEAIRQkvkggksggrkgsskavVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIagefnirgypTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVYC
Low Complexity Region (SEG)
LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQkvkggksggrkgsskavvELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVYC
Disordered region (IsUnstruct)
*LLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN************VTGFPTVKIFS********QGARTADAIIDVALEAIR*****************VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF*******************QDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWD***********************KDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVY*
Disordered Region (DISOPRED)
LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVA**********************VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKM********FSYDGINEFLRDLSYGRG***************VDAWDGKDGELPQ***********EDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKV**
Disordered Region (DISEMBL)
LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD*********GVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQK**************AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP***************TSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVYC
Disordered Region (DISPRO)
LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVK***********KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDA*****************DVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKV*C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVYC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	461	2.2.26 [Sep-21-2011]
Q63081	440	Protein disulfide-isomera	yes	N/A	0.885	0.927	0.582	1e-143
Q15084	440	Protein disulfide-isomera	yes	N/A	0.885	0.927	0.585	1e-143
Q5R6T1	440	Protein disulfide-isomera	yes	N/A	0.882	0.925	0.586	1e-142
Q922R8	440	Protein disulfide-isomera	yes	N/A	0.885	0.927	0.585	1e-142
P38660	439	Protein disulfide-isomera	N/A	N/A	0.874	0.917	0.583	1e-141
Q11067	440	Probable protein disulfid	yes	N/A	0.861	0.902	0.548	1e-132
Q9MAU6	447	Protein disulfide-isomera	yes	N/A	0.856	0.883	0.423	2e-93
O48773	440	Protein disulfide-isomera	no	N/A	0.854	0.895	0.400	1e-89
Q67UF5	441	Protein disulfide isomera	yes	N/A	0.876	0.916	0.380	3e-88
Q92249	369	Protein disulfide-isomera	N/A	N/A	0.462	0.577	0.408	2e-40

>sp|Q63081|PDIA6_RAT Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2

 Score =  508 bits (1307), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/429 (58%), Positives = 317/429 (73%), Gaps = 21/429 (4%)

Query: 7   SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV 66
           +V  LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K A+ALK V
Sbjct: 16  AVSALYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAASALKDV 75

Query: 67  VKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQKV 125
           VKVGAVNAD+ +SL   +GV GFPT+KIF ++K  P  YQG RT +AI+D AL A+RQ V
Sbjct: 76  VKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRQLV 135

Query: 126 K-----------GGKSG-GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKN 173
           K            GK G G   S K VVELTD  F+K V +S+D+W+VEF+APWCGHCKN
Sbjct: 136 KDRLGGRSGGYSSGKQGRGDSSSKKDVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKN 195

Query: 174 LEPHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE 229
           LEP W  AA+E++    GKVKL AVDATV+Q +A  + I+G+PTIK F  G        +
Sbjct: 196 LEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPV----D 251

Query: 230 YNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSS 289
           Y+GGRT  DIV+ AL+ +++N PPPE+ +I++E   K+ CE+H LC+VAVLPHILD  ++
Sbjct: 252 YDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKKTCEEHQLCVVAVLPHILDTGAT 311

Query: 290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSL 349
            RN+YLE+L KL DKYK+K+WGW+W+EA AQ +LEN L IGGFGYPAMA +NA+KMK++L
Sbjct: 312 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQYELENALGIGGFGYPAMAAINARKMKFAL 371

Query: 350 LKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVD 409
           LKG FS  GINEFLR+LS+GRG TAPV G + P I   + WDGKDGELP E+DIDLSDV+
Sbjct: 372 LKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPNITPREPWDGKDGELPVEDDIDLSDVE 431

Query: 410 LEDLPKDEF 418
           L+DL KDE 
Sbjct: 432 LDDLEKDEL 440

May function as a chaperone that inhibits aggregation of misfolded proteins. Plays a role in platelet aggregation and activation by agonists such as convulxin, collagen and thrombin.
Rattus norvegicus (taxid: 10116)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

>sp|Q15084|PDIA6_HUMAN Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1

 Score =  507 bits (1306), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/429 (58%), Positives = 317/429 (73%), Gaps = 21/429 (4%)

Query: 7   SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV 66
           +V+ LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K ATALK V
Sbjct: 16  AVNGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALKDV 75

Query: 67  VKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQKV 125
           VKVGAV+AD+  SL   +GV GFPT+KIF S+K  P  YQG RT +AI+D AL A+RQ V
Sbjct: 76  VKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIVDAALSALRQLV 135

Query: 126 K-----------GGKSGGRKGSSKA-VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKN 173
           K            GK G    SSK  V+ELTD +F+K V +S+D+W+VEF+APWCGHCKN
Sbjct: 136 KDRLGGRSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKN 195

Query: 174 LEPHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE 229
           LEP W  AASE++    GKVKL AVDATV+Q +A  + IRG+PTIK F  G        +
Sbjct: 196 LEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPV----D 251

Query: 230 YNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSS 289
           Y+GGRT  DIV+ AL+ +++N PPPE+ +I++E   K  CE+H LC+VAVLPHILD  ++
Sbjct: 252 YDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKRTCEEHQLCVVAVLPHILDTGAA 311

Query: 290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSL 349
            RN+YLE+L KL DKYK+K+WGW+W+EA AQ +LE  L IGGFGYPAMA +NA+KMK++L
Sbjct: 312 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAMAAINARKMKFAL 371

Query: 350 LKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVD 409
           LKG FS  GINEFLR+LS+GRG TAPV G A P I + + WDG+DGELP E+DIDLSDV+
Sbjct: 372 LKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLSDVE 431

Query: 410 LEDLPKDEF 418
           L+DL KDE 
Sbjct: 432 LDDLGKDEL 440

May function as a chaperone that inhibits aggregation of misfolded proteins. Plays a role in platelet aggregation and activation by agonists such as convulxin, collagen and thrombin.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5R6T1|PDIA6_PONAB Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1

 Score =  506 bits (1304), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/428 (58%), Positives = 316/428 (73%), Gaps = 21/428 (4%)

Query: 8   VHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVV 67
           V+ LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K ATALK VV
Sbjct: 17  VNGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALKDVV 76

Query: 68  KVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQKVK 126
           KVGAV+AD+  SL   +GV GFPT+KIF S+K  P  YQG RT +AI+D AL A+RQ VK
Sbjct: 77  KVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIVDAALSALRQLVK 136

Query: 127 -----------GGKSGGRKGSSKA-VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNL 174
                       GK G    SSK  V+ELTD +F+K V +S+D+W+VEF+APWCGHCKNL
Sbjct: 137 DRLGGQSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNL 196

Query: 175 EPHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEY 230
           EP W  AASE++    GKVKL AVDATV+Q +A  + IRG+PTIK F  G        +Y
Sbjct: 197 EPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPV----DY 252

Query: 231 NGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSC 290
           +GGRT  DIV+ AL+ +++N PPPE+ +I+SE   K  CE+H LC+V+VLPHILD  ++ 
Sbjct: 253 DGGRTRSDIVSRALDLFSDNAPPPELLEIISEDIAKRTCEEHQLCVVSVLPHILDTGAAG 312

Query: 291 RNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLL 350
           RN+YLE+L KL DKYK+K+WGW+W+EA AQ +LE  L IGGFGYPAMA +NA+KMK++LL
Sbjct: 313 RNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAMAAINARKMKFALL 372

Query: 351 KGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDL 410
           KG FS  GINEFLR+LS+GRG TAPV G A P I + + WDG+DGELP E+DIDLSDV+L
Sbjct: 373 KGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLSDVEL 432

Query: 411 EDLPKDEF 418
           +DL KDE 
Sbjct: 433 DDLGKDEL 440

May function as a chaperone that inhibits aggregation of misfolded proteins. Plays a role in platelet aggregation and activation by agonists such as convulxin, collagen and thrombin.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q922R8|PDIA6_MOUSE Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3

 Score =  506 bits (1304), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/429 (58%), Positives = 317/429 (73%), Gaps = 21/429 (4%)

Query: 7   SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV 66
           +V  LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K ATALK V
Sbjct: 16  AVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV 75

Query: 67  VKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQKV 125
           VKVGAVNAD+ +SL   +GV GFPT+KIF ++K  P  YQG RT +AI+D AL A+RQ V
Sbjct: 76  VKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRQLV 135

Query: 126 K-----------GGKSG-GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKN 173
           K            GK G G   S K VVELTD  F+K V +S+D+W+VEF+APWCGHCKN
Sbjct: 136 KDRLGGRSGGYSSGKQGRGDSSSKKDVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKN 195

Query: 174 LEPHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE 229
           LEP W  AA+E++    GKVKL AVDATV+Q +A  + I+G+PTIK F  G        +
Sbjct: 196 LEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPV----D 251

Query: 230 YNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSS 289
           Y+GGRT  DIV+ AL+ +++N PPPE+ +I++E   K+ CE+H LC+VAVLPHILD  ++
Sbjct: 252 YDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKKTCEEHQLCVVAVLPHILDTGAA 311

Query: 290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSL 349
            RN+YLE+L KL DKYK+K+WGW+W+EA AQ +LEN L IGGFGYPAMA +NA+KMK++L
Sbjct: 312 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQYELENALGIGGFGYPAMAAINARKMKFAL 371

Query: 350 LKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVD 409
           LKG FS  GINEFLR+LS+GRG TAPV G + P I   + WDGKDGELP E+DIDLSDV+
Sbjct: 372 LKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPTITPREPWDGKDGELPVEDDIDLSDVE 431

Query: 410 LEDLPKDEF 418
           L+DL KDE 
Sbjct: 432 LDDLEKDEL 440

May function as a chaperone that inhibits aggregation of misfolded proteins. Plays a role in platelet aggregation and activation by agonists such as convulxin, collagen and thrombin.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P38660|PDIA6_MESAU Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1

 Score =  500 bits (1287), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/425 (58%), Positives = 313/425 (73%), Gaps = 22/425 (5%)

Query: 11  LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG 70
           LY S  DVI+LT SNF+ +VI+S+ +W+VE+YAPWCGHCQ    E+ K ATALK VVKVG
Sbjct: 20  LYSSSDDVIELTPSNFNREVIQSNSLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVG 79

Query: 71  AVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQKVK--- 126
           AV+AD+ +SL   +GV GFPT+KIF ++K  P  YQG RT +AI+D AL A+RQ VK   
Sbjct: 80  AVDADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRQLVKDRL 139

Query: 127 --------GGKSG-GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPH 177
                    GK G G   S K V+ELTD  F+K V +SDD+W+VEF+APWCGHCKNLEP 
Sbjct: 140 SGRSGGYSSGKQGRGDSSSKKDVIELTDDTFDKNVLDSDDVWMVEFYAPWCGHCKNLEPE 199

Query: 178 WEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG 233
           W  AA+E++    GKVKL AVDATV+Q +A  + IRG+PTIK F  G        +Y+GG
Sbjct: 200 WATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIFQKGEAPV----DYDGG 255

Query: 234 RTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNN 293
           RT  DIV+ AL+ +++N PPPE+ +I++E   K+ CE+H LC+VAVLPHILD   + RN+
Sbjct: 256 RTRSDIVSRALDLFSDNAPPPELLEIINEDVAKKMCEEHQLCVVAVLPHILDT-GAARNS 314

Query: 294 YLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGP 353
           YLEIL KL DKYK+K+WGW+W+EA AQ +LEN L IGGFGYPAMA +NA+KMK++LLKG 
Sbjct: 315 YLEILLKLADKYKKKMWGWLWTEAGAQSELENALGIGGFGYPAMARINARKMKFALLKGS 374

Query: 354 FSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDL 413
           FS  GINEFLR+LS+GR  TAPV G + P I   + WDG+DGELP E+DIDLSDV+L+DL
Sbjct: 375 FSEQGINEFLRELSFGRASTAPVGGGSFPAITAREPWDGRDGELPVEDDIDLSDVELDDL 434

Query: 414 PKDEF 418
            KDE 
Sbjct: 435 EKDEL 439

May function as a chaperone that inhibits aggregation of misfolded proteins. Plays a role in platelet aggregation and activation by agonists such as convulxin, collagen and thrombin.

Mesocricetus auratus (taxid: 10036)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q11067|PDIA6_CAEEL Probable protein disulfide-isomerase A6 OS=Caenorhabditis elegans GN=tag-320 PE=3 SV=1

 Score =  473 bits (1218), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/416 (54%), Positives = 291/416 (69%), Gaps = 19/416 (4%)

Query: 3   LTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATA 62
           L + SV  +Y    DV++LT +NF  KVI SD++WIVE+YAPWCGHC+S   EY K A+A
Sbjct: 11  LAITSVCGMYSKKDDVVELTEANFQSKVINSDDIWIVEFYAPWCGHCKSLVPEYKKAASA 70

Query: 63  LKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAI 121
           LKGV KVGAV+  + +S+   + V GFPT+KIF +DK+ PT Y G RTA AI D  L   
Sbjct: 71  LKGVAKVGAVDMTQHQSVGGPYNVQGFPTLKIFGADKKKPTDYNGQRTAQAIADSVLAEA 130

Query: 122 RQKVKG-----------------GKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFF 164
           ++ V                       G  GS   VVELTD+NFE LV NS DIWLVEFF
Sbjct: 131 KKAVSARLGGKSSGSSSSGSGSGSGKRGGGGSGNEVVELTDANFEDLVLNSKDIWLVEFF 190

Query: 165 APWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSA 224
           APWCGHCK+LEP W+ AASEL+GKV+LGA+DATVH  +A +F IRG+PTIK+F+PGS   
Sbjct: 191 APWCGHCKSLEPQWKAAASELKGKVRLGALDATVHTVVANKFAIRGFPTIKYFAPGS-DV 249

Query: 225 SDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHIL 284
           SDAQ+Y+GGR S DIV WA  +  EN+P PE+ + +++   ++AC++  LCI A LPHIL
Sbjct: 250 SDAQDYDGGRQSSDIVAWASARAQENMPAPEVFEGINQQVVEDACKEKQLCIFAFLPHIL 309

Query: 285 DCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKK 344
           DCQS CRNNYL +L++  +K+K+ +WGWIW E  AQP LE   E+GGFGYPAM  LN +K
Sbjct: 310 DCQSECRNNYLAMLKEQSEKFKKNLWGWIWVEGAAQPALEESFEVGGFGYPAMTALNFRK 369

Query: 345 MKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQE 400
            KY++LKG F  DGI+EFLRDLSYG+G T+ ++G   P+I + + WDGKDG LP E
Sbjct: 370 NKYAVLKGSFGKDGIHEFLRDLSYGKGRTSSLRGDGFPKIQKTEKWDGKDGALPAE 425

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9MAU6|PDI22_ARATH Protein disulfide-isomerase like 2-2 OS=Arabidopsis thaliana GN=PDIL2-2 PE=2 SV=2

 Score =  343 bits (879), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 177/418 (42%), Positives = 253/418 (60%), Gaps = 23/418 (5%)

Query: 9   HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK 68
           + LY S S V++LT SNF  KV+ S+ V +VE++APWCGHCQS    + K+A+ LKG+  
Sbjct: 25  NALYGSSSPVLQLTPSNFKSKVLNSNGVVLVEFFAPWCGHCQSLTPTWEKVASTLKGIAT 84

Query: 69  VGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQ----- 123
           V A++AD  KS+S  +GV GFPT+K+F   + P  YQGAR A +I   A++ I+      
Sbjct: 85  VAAIDADAHKSVSQDYGVRGFPTIKVFVPGKPPIDYQGARDAKSISQFAIKQIKALLKDR 144

Query: 124 ---KVKGGKSGG-----RKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLE 175
              K  G K+GG     +K    A VEL  SNF++LV  S ++W+VEFFAPWCGHCK L 
Sbjct: 145 LDGKTSGTKNGGGSSEKKKSEPSASVELNSSNFDELVTESKELWIVEFFAPWCGHCKKLA 204

Query: 176 PHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT 235
           P W+KAA+ L+GKVKLG V+    Q I   F ++G+PTI  F  GS  +S    Y G R+
Sbjct: 205 PEWKKAANNLKGKVKLGHVNCDAEQSIKSRFKVQGFPTILVF--GSDKSSPVP-YEGARS 261

Query: 236 SQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYL 295
           +  I ++AL +   N  P E+ ++      ++ C    +C V+ LP ILD ++  RN YL
Sbjct: 262 ASAIESFALEQLESNAGPAEVTELTGPDVMEDKCGSAAICFVSFLPDILDSKAEGRNKYL 321

Query: 296 EILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFS 355
           E+L  + DK+K+  +G++W  A  QPDLE  + +GG+GYPAM  LNAKK  Y+ LK  F 
Sbjct: 322 EMLLSVADKFKKDPYGFVWVAAGKQPDLEKRVGVGGYGYPAMVALNAKKGAYAPLKSGFE 381

Query: 356 YDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDL 413
              + +F+++ + G     P+ G    +I + +AWDGKDGE+     +D  +  LEDL
Sbjct: 382 VKHLKDFVKEAAKGGKGNLPIDGTM--EIVKTEAWDGKDGEV-----VDADEFSLEDL 432

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|O48773|PDI23_ARATH Protein disulfide-isomerase 2-3 OS=Arabidopsis thaliana GN=PDIL2-3 PE=2 SV=1

 Score =  330 bits (847), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 164/409 (40%), Positives = 241/409 (58%), Gaps = 15/409 (3%)

Query: 10  CLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV 69
            LY S S V++LT SNF  KV+ S+ V +VE++APWCGHC++    + K+A  LKGV  V
Sbjct: 24  ALYGSSSPVVQLTASNFKSKVLNSNGVVLVEFFAPWCGHCKALTPTWEKVANILKGVATV 83

Query: 70  GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIR------- 122
            A++AD  +S +  +G+ GFPT+K+F   + P  YQGAR A +I + A + I+       
Sbjct: 84  AAIDADAHQSAAQDYGIKGFPTIKVFVPGKAPIDYQGARDAKSIANFAYKQIKGLLSDRL 143

Query: 123 ---QKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWE 179
               K  GG S  +K    A VEL  SNF+ LV  S+++W+VEFFAPWCGHCK L P W+
Sbjct: 144 EGKSKPTGGGSKEKKSEPSASVELNASNFDDLVIESNELWIVEFFAPWCGHCKKLAPEWK 203

Query: 180 KAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDI 239
           +AA  L+GKVKLG V+  V Q I   F ++G+PTI  F P     S    Y G R++  I
Sbjct: 204 RAAKNLQGKVKLGHVNCDVEQSIMSRFKVQGFPTILVFGP---DKSSPYPYEGARSASAI 260

Query: 240 VTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQ 299
            ++A      +  P E+ ++      ++ C    +C ++ LP ILD ++  RN YLE+L 
Sbjct: 261 ESFASELVESSAGPVEVTELTGPDVMEKKCGSAAICFISFLPDILDSKAEGRNKYLEMLL 320

Query: 300 KLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGI 359
            + +K+K++ + ++W  AV Q DLE  + +GG+GYPAM  +N KK  Y+ LK  F    +
Sbjct: 321 SVAEKFKKQPYSFMWVAAVTQMDLEKRVNVGGYGYPAMVAMNVKKGVYAPLKSAFELQHL 380

Query: 360 NEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDV 408
            EF++D   G     P+ G   P+I +   WDGKDGEL +E++  L ++
Sbjct: 381 LEFVKDAGTGGKGNVPMNGT--PEIVKTKEWDGKDGELIEEDEFSLDEL 427

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q67UF5|PDI23_ORYSJ Protein disulfide isomerase-like 2-3 OS=Oryza sativa subsp. japonica GN=PDIL2-3 PE=2 SV=1

 Score =  325 bits (834), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 161/423 (38%), Positives = 239/423 (56%), Gaps = 19/423 (4%)

Query: 6   ASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG 65
           + V  LY + S V++   +NF  KV+ S+ V +VE++APWCGHCQ     + K A  LKG
Sbjct: 19  SPVSALYSAGSPVLQFNPNNFKSKVLNSNGVVLVEFFAPWCGHCQQLTPIWEKAAGVLKG 78

Query: 66  VVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKV 125
           V  V A++AD  K L+  +G+ GFPT+K+F   + P  YQGAR    I++ AL  ++  +
Sbjct: 79  VATVAALDADAHKELAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIVEFALSQVKALL 138

Query: 126 KGGKSG--------------GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHC 171
           +   +G                K    A +EL   NF+KLV  S D+W+VEFFAPWCGHC
Sbjct: 139 RDRLNGKTSAGSGGKKSGGSSEKTEPSASIELNSQNFDKLVTKSKDLWIVEFFAPWCGHC 198

Query: 172 KNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYN 231
           K L P W+KAA  L+G+VKLG VD    + +  ++ + G+PTI  F     S      Y 
Sbjct: 199 KKLAPEWKKAAKNLKGQVKLGHVDCDAEKSLMSKYKVEGFPTILVFGADKESPFP---YQ 255

Query: 232 GGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCR 291
           G R +  I ++AL +   N  PPE+ ++      +E C    +C V+ LP ILD ++  R
Sbjct: 256 GARVASAIESFALEQLEANAAPPEVSELTGPDAMEEKCASAAICFVSFLPDILDSKAEGR 315

Query: 292 NNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLK 351
           N YLE+L  + +K+K+  + ++W+ A  Q DLE  + +GG+GYPAM  LN KK  Y+ L+
Sbjct: 316 NKYLELLLSVAEKFKKSPYSFVWTAAGKQADLEKQVGVGGYGYPAMVALNVKKGAYAPLR 375

Query: 352 GPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLE 411
             F  D I EF+++   G     P+ G   P I Q + WDGKDGE+ +E++  L ++  +
Sbjct: 376 SAFQLDEITEFVKEAGRGGKGNLPLDGT--PTIVQSEPWDGKDGEVIEEDEFSLEELMAD 433

Query: 412 DLP 414
           + P
Sbjct: 434 NSP 436

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q92249|ERP38_NEUCR Protein disulfide-isomerase erp38 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erp38 PE=2 SV=2

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/230 (40%), Positives = 132/230 (57%), Gaps = 17/230 (7%)

Query: 21  LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL---KGVVKVGAVNADEE 77
           L  SNFDD V+KS +  +VE++APWCGHC++    Y +LATAL   K  V++  V+AD E
Sbjct: 25  LIPSNFDDVVLKSGKPTLVEFFAPWCGHCKNLAPVYEELATALEYAKDKVQIAKVDADAE 84

Query: 78  KSLSSSHGVTGFPTVKIFSDK-RNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGS 136
           ++L    GV GFPT+K F  K   P  Y+G R  D++ +   E      K G    +KGS
Sbjct: 85  RALGKRFGVQGFPTLKFFDGKSEQPVDYKGGRDLDSLSNFIAE------KTGVKARKKGS 138

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL--EGKVKLGAV 194
           + ++V + +    K     D   LV F APWCGHCKNL P WEK A+    + ++ +  V
Sbjct: 139 APSLVNILNDATIKGAIGGDKNVLVAFTAPWCGHCKNLAPTWEKLAATFASDPEITIAKV 198

Query: 195 --DATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
             DA   ++ A E+ + G+PTIKFF  GS +  D   YNGGR+  D+V +
Sbjct: 199 DADAPTGKKSAAEYGVSGFPTIKFFPKGSTTPED---YNGGRSEADLVKF 245

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
270014675	432	hypothetical protein TcasGA2_TC004723 [T	0.900	0.960	0.650	1e-162
189233829	433	PREDICTED: similar to protein disulfide-	0.900	0.958	0.651	1e-161
156554116	437	PREDICTED: protein disulfide-isomerase A	0.902	0.951	0.638	1e-160
326499920	434	predicted protein [Hordeum vulgare subsp	0.904	0.960	0.647	1e-159
380019824	427	PREDICTED: protein disulfide-isomerase A	0.900	0.971	0.629	1e-159
340719942	428	PREDICTED: protein disulfide-isomerase A	0.869	0.936	0.641	1e-157
350408527	428	PREDICTED: protein disulfide-isomerase A	0.869	0.936	0.641	1e-157
66551889	427	PREDICTED: protein disulfide-isomerase A	0.900	0.971	0.620	1e-157
332020212	439	Protein disulfide-isomerase A6 [Acromyrm	0.885	0.929	0.637	1e-156
322794891	439	hypothetical protein SINV_06451 [Solenop	0.885	0.929	0.637	1e-155

>gi|270014675|gb|EFA11123.1| hypothetical protein TcasGA2_TC004723 [Tribolium castaneum]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/426 (65%), Positives = 337/426 (79%), Gaps = 11/426 (2%)

Query: 1   LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 60
           L L +AS   LYPS S+VI LTTSNFD KV+K DEVWIVE++APWCGHCQ+   EY K A
Sbjct: 10  LTLVLASALALYPSSSNVIDLTTSNFD-KVLKGDEVWIVEFFAPWCGHCQALVPEYTKAA 68

Query: 61  TALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALE 119
            ALKGVVKVGAVNADE K L   +GV GFPT+KIF ++K  P  Y GARTA  ++D AL+
Sbjct: 69  AALKGVVKVGAVNADEYKELGGRYGVRGFPTIKIFGANKDKPEDYNGARTAQGLVDAALQ 128

Query: 120 AIRQKVKGGKSGG-------RKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCK 172
           A++ KVK    GG       R   +K V+ELTDSNF+K V +S+D+WLVEFFAPWCGHCK
Sbjct: 129 AVKSKVKASLGGGSSGSGQVRSHDTKDVIELTDSNFDKQVLHSEDMWLVEFFAPWCGHCK 188

Query: 173 NLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG 232
           NL PHW KAA+EL+GKVKLGA+DATVHQ  A ++ ++GYPTIKFF+PG +++    +Y+G
Sbjct: 189 NLAPHWAKAATELKGKVKLGALDATVHQAQASKYGVQGYPTIKFFAPGKKTSDSVSDYDG 248

Query: 233 GRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRN 292
           GRT+ DIVTWAL K  ENVP PE+ QI+ +  FKEAC+   LC+VA+LPHILDCQS CRN
Sbjct: 249 GRTASDIVTWALEKLAENVPAPEVAQIIDQNMFKEACDQKSLCVVALLPHILDCQSDCRN 308

Query: 293 NYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKG 352
           NY+ IL++LG+KYK+K+WGW+WSEA AQ +LEN L+IGGFGYPAMAV+N +KMKYS+L+G
Sbjct: 309 NYINILKELGEKYKKKMWGWVWSEAGAQLELENALDIGGFGYPAMAVINPRKMKYSILRG 368

Query: 353 PFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLED 412
            FS DGINEFLRDLSYGRG+T+PVKG  LP+I  ++ WDGKDGELP EEDIDLSDVDL+ 
Sbjct: 369 SFSRDGINEFLRDLSYGRGNTSPVKGDKLPKIVSIEPWDGKDGELPPEEDIDLSDVDLDS 428

Query: 413 LPKDEF 418
             KDE 
Sbjct: 429 --KDEL 432

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233829|ref|XP_972053.2| PREDICTED: similar to protein disulfide-isomerase A6 [Tribolium castaneum]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 278/427 (65%), Positives = 338/427 (79%), Gaps = 12/427 (2%)

Query: 1   LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 60
           L L +AS   LYPS S+VI LTTSNFD KV+K DEVWIVE++APWCGHCQ+   EY K A
Sbjct: 10  LTLVLASALALYPSSSNVIDLTTSNFD-KVLKGDEVWIVEFFAPWCGHCQALVPEYTKAA 68

Query: 61  TALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALE 119
            ALKGVVKVGAVNADE K L   +GV GFPT+KIF ++K  P  Y GARTA  ++D AL+
Sbjct: 69  AALKGVVKVGAVNADEYKELGGRYGVRGFPTIKIFGANKDKPEDYNGARTAQGLVDAALQ 128

Query: 120 AIRQKVKGGKSGGRKGS--------SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHC 171
           A++ KVK    GG  GS        +K V+ELTDSNF+K V +S+D+WLVEFFAPWCGHC
Sbjct: 129 AVKSKVKASLGGGSSGSGQVRVSHDTKDVIELTDSNFDKQVLHSEDMWLVEFFAPWCGHC 188

Query: 172 KNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYN 231
           KNL PHW KAA+EL+GKVKLGA+DATVHQ  A ++ ++GYPTIKFF+PG +++    +Y+
Sbjct: 189 KNLAPHWAKAATELKGKVKLGALDATVHQAQASKYGVQGYPTIKFFAPGKKTSDSVSDYD 248

Query: 232 GGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCR 291
           GGRT+ DIVTWAL K  ENVP PE+ QI+ +  FKEAC+   LC+VA+LPHILDCQS CR
Sbjct: 249 GGRTASDIVTWALEKLAENVPAPEVAQIIDQNMFKEACDQKSLCVVALLPHILDCQSDCR 308

Query: 292 NNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLK 351
           NNY+ IL++LG+KYK+K+WGW+WSEA AQ +LEN L+IGGFGYPAMAV+N +KMKYS+L+
Sbjct: 309 NNYINILKELGEKYKKKMWGWVWSEAGAQLELENALDIGGFGYPAMAVINPRKMKYSILR 368

Query: 352 GPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLE 411
           G FS DGINEFLRDLSYGRG+T+PVKG  LP+I  ++ WDGKDGELP EEDIDLSDVDL+
Sbjct: 369 GSFSRDGINEFLRDLSYGRGNTSPVKGDKLPKIVSIEPWDGKDGELPPEEDIDLSDVDLD 428

Query: 412 DLPKDEF 418
              KDE 
Sbjct: 429 S--KDEL 433

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554116|ref|XP_001602967.1| PREDICTED: protein disulfide-isomerase A6-like [Nasonia vitripennis]

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/429 (63%), Positives = 327/429 (76%), Gaps = 13/429 (3%)

Query: 1   LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 60
           LLL    V C+YPS SDV+ LT +NFD+KVI SD +WIVE+YAPWCGHCQ  K EY K A
Sbjct: 11  LLLGAVGVQCMYPSSSDVVDLTPNNFDNKVINSDSIWIVEFYAPWCGHCQQLKPEYEKAA 70

Query: 61  TALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALE 119
           TALKG+VKVG VNAD+ KSL S   V GFPT+KIF +DK  P  Y GARTA  ++D AL+
Sbjct: 71  TALKGIVKVGGVNADDHKSLGSKFNVRGFPTIKIFGADKNKPEDYNGARTAQGLVDAALK 130

Query: 120 AIRQKVKG----------GKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCG 169
           A  +K +           G        SK V+ELTD NF+KLV NS+D+WLVEFFAPWCG
Sbjct: 131 AASEKARSTLSGKKSSSGGSKSEGSKDSKDVIELTDENFDKLVLNSEDMWLVEFFAPWCG 190

Query: 170 HCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE 229
           HCKNL P W  AASEL+GKVKLGA+DATVH   A ++ IRGYPTIK+F+PG + +    +
Sbjct: 191 HCKNLAPQWASAASELKGKVKLGALDATVHTIKASQYEIRGYPTIKYFAPGKKDSDSVSD 250

Query: 230 YNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSS 289
           Y+GGR S DIVTWAL+K  ENVP PE+ QI++E + K+ACED PLCIV+VLPHILDCQS 
Sbjct: 251 YDGGRISSDIVTWALDKLAENVPAPELTQIINEKSLKKACEDKPLCIVSVLPHILDCQSD 310

Query: 290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSL 349
           CRN+YL+IL  LG+K+K+K+WGW+W+EA AQP +E  LEIGGFGYPA+A +N KKMKYSL
Sbjct: 311 CRNDYLKILTTLGEKFKKKMWGWVWAEAGAQPHIEEALEIGGFGYPALAAVNIKKMKYSL 370

Query: 350 LKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVD 409
           LKG FS DGINEFLRDLSYGRG TAP+KG  LP+I + + WDGKD E PQEEDIDLSDVD
Sbjct: 371 LKGSFSQDGINEFLRDLSYGRGGTAPLKGTELPKIYETEPWDGKDAEPPQEEDIDLSDVD 430

Query: 410 LEDLPKDEF 418
           L++  KDE 
Sbjct: 431 LDE--KDEL 437

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326499920|dbj|BAJ90795.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 277/428 (64%), Positives = 332/428 (77%), Gaps = 11/428 (2%)

Query: 1   LLLTVA-SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKL 59
           LL+ +A S   +YPS SDVI+LT  NF+ +V++S E+W+VE+YAPWCGHCQ    EY K 
Sbjct: 8   LLVALANSAVAIYPSNSDVIELTDDNFN-QVLQSVEIWVVEFYAPWCGHCQRLVPEYTKA 66

Query: 60  ATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALE 119
           A ALKG+VKV A++AD+  S +  +GV GFPTVKIF DK  P  + G RTA  I D  ++
Sbjct: 67  AKALKGIVKVAAIDADKYPSFAGRYGVQGFPTVKIFVDKNKPQDFTGDRTAVGITDEVIK 126

Query: 120 AIRQKVKGGKSGGRKGSSKA---------VVELTDSNFEKLVYNSDDIWLVEFFAPWCGH 170
           AI+  +     G   GSSK+         VVELTDSNF+KLV NSDDIWLVEFFAPWCGH
Sbjct: 127 AIKNAISANLQGVPYGSSKSSKKSSSGDDVVELTDSNFDKLVLNSDDIWLVEFFAPWCGH 186

Query: 171 CKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEY 230
           CKNL PHW  AASEL+GKVKLGA+DATVH   A EFNIRGYPTIKFF  G+ S+S A+EY
Sbjct: 187 CKNLAPHWAAAASELKGKVKLGALDATVHSSKAQEFNIRGYPTIKFFPSGTSSSSGAEEY 246

Query: 231 NGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSC 290
            GGRTS DIV+WA+ K+ ENVPPP+I +IV+E TFK  C +H LC+V+VLPHILDCQ+SC
Sbjct: 247 TGGRTSSDIVSWAMQKHQENVPPPDIIEIVNEDTFKAGCSEHALCVVSVLPHILDCQASC 306

Query: 291 RNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLL 350
           RN YL  L+ LGDK+KQK+WGW+W+EA  QP+LE+ LEIGGFGYPA+AVLN KKMKYS+L
Sbjct: 307 RNEYLNTLRSLGDKFKQKLWGWLWAEAGKQPELESTLEIGGFGYPALAVLNVKKMKYSIL 366

Query: 351 KGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDL 410
           +G FS DGI EFLRDLSYGRG TAPVKGAALP+I   + WDGKDGELP  +DIDLSDVDL
Sbjct: 367 RGSFSEDGIKEFLRDLSYGRGTTAPVKGAALPEIQATEPWDGKDGELPTADDIDLSDVDL 426

Query: 411 EDLPKDEF 418
           ++LPK+E 
Sbjct: 427 DELPKEEL 434

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380019824|ref|XP_003693801.1| PREDICTED: protein disulfide-isomerase A6-like [Apis florea]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/424 (62%), Positives = 327/424 (77%), Gaps = 9/424 (2%)

Query: 1   LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 60
           +LL ++  HCLY S SDVI L  +NFD+ V+ SD +WIVE++APWCGHCQ    EY K A
Sbjct: 7   ILLLISGAHCLY-SNSDVINLKPNNFDNLVLNSDNIWIVEFFAPWCGHCQMLTPEYNKAA 65

Query: 61  TALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEA 120
           TALKG+VKVGAVNADE KSL + +G+ GFPT+KIF     P  Y G RTA  I+D AL  
Sbjct: 66  TALKGIVKVGAVNADEHKSLGAKYGIQGFPTIKIFGIDNKPEDYNGPRTAVGIVDAALNG 125

Query: 121 IRQKVK----GGKSGG--RKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNL 174
             QK +    G +S G  +   SK V+ELTD NF+K+V NSDD+WL+EF+APWCGHCKNL
Sbjct: 126 AGQKARRILGGKRSTGDFKSKDSKDVIELTDDNFDKIVMNSDDMWLIEFYAPWCGHCKNL 185

Query: 175 EPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR 234
            P W  AA+EL+GKVKLGA+DAT ++  AG++ I+GYPTIK+F+PG +S    QEY+GGR
Sbjct: 186 APIWASAATELKGKVKLGAIDATANRVKAGQYEIKGYPTIKYFAPGKKSTDFVQEYDGGR 245

Query: 235 TSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNY 294
           TS DIV WAL K  ENVP PE+ QI++E   +E CE+ PLC+++VLPHILDCQS CRN Y
Sbjct: 246 TSSDIVNWALEKLAENVPAPEVLQIINEKGLREVCENKPLCVISVLPHILDCQSECRNGY 305

Query: 295 LEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPF 354
           L+IL +LG+KYKQK+WGW+W+EA AQP +E  LEIGGFGYPA+A +N KKMKYSLLKG F
Sbjct: 306 LKILNELGEKYKQKMWGWVWTEAGAQPHIEEALEIGGFGYPALAAVNIKKMKYSLLKGSF 365

Query: 355 SYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLP 414
           SYDGINEFLRDLSYGRG TAP+KGA LP I +  +WDGKD ELPQEE+IDLSD+DL++  
Sbjct: 366 SYDGINEFLRDLSYGRGGTAPLKGAQLPTILETKSWDGKDAELPQEEEIDLSDIDLDE-- 423

Query: 415 KDEF 418
           KDE 
Sbjct: 424 KDEL 427

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719942|ref|XP_003398403.1| PREDICTED: protein disulfide-isomerase A6-like [Bombus terrestris]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 261/407 (64%), Positives = 310/407 (76%), Gaps = 6/407 (1%)

Query: 1   LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 60
           +LL +   HCLY S SDVI+L  +NFD  V+ SD VWIVE++APWCGHCQ    EY K A
Sbjct: 7   ILLLITGAHCLYSSNSDVIELKPNNFDSLVLNSDNVWIVEFFAPWCGHCQQLTPEYDKAA 66

Query: 61  TALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEA 120
           TALKG+VKVGAVNADE KSL S +G+ GFPT+KIF     P  Y G RTA  I+D AL A
Sbjct: 67  TALKGIVKVGAVNADEHKSLGSRYGIQGFPTIKIFGTDNKPEDYNGPRTATGIVDAALNA 126

Query: 121 IRQKVKGGKSGGRKGS------SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNL 174
             QK +    G R G       SK V+ELTD NF+K+V NS+D+WLVEF+APWCGHCKNL
Sbjct: 127 ASQKARRALGGKRSGGDSKSKDSKDVIELTDDNFDKIVMNSEDMWLVEFYAPWCGHCKNL 186

Query: 175 EPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR 234
            P W  AA+EL+GKVKLGA+DATV++  A ++ I+GYPTIK+F+PG +S+   QEY+GGR
Sbjct: 187 APIWASAATELKGKVKLGAIDATVNRVKASQYEIKGYPTIKYFAPGKKSSDSVQEYDGGR 246

Query: 235 TSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNY 294
           TS DIV W+L K  ENVP PE+ QI +E T +E CED PLC+V+VLPHILDCQS CRN Y
Sbjct: 247 TSSDIVNWSLEKVAENVPAPEVVQITNEKTLREVCEDKPLCVVSVLPHILDCQSDCRNGY 306

Query: 295 LEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPF 354
           L++L  LG+KYKQK+WGW+W+EA AQP +E  LEIGGFGYPA+A +N KKMKYSLLKG F
Sbjct: 307 LKVLNDLGEKYKQKMWGWLWAEAGAQPHIEEALEIGGFGYPALAAVNVKKMKYSLLKGSF 366

Query: 355 SYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEE 401
           SYDGINEFLRDLSYGRG TAP+KGA LP I +   WDGKD ELPQEE
Sbjct: 367 SYDGINEFLRDLSYGRGGTAPLKGAQLPTIFETKPWDGKDAELPQEE 413

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408527|ref|XP_003488434.1| PREDICTED: protein disulfide-isomerase A6-like [Bombus impatiens]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 261/407 (64%), Positives = 310/407 (76%), Gaps = 6/407 (1%)

Query: 1   LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 60
           +LL +   HCLY S SDVI+L  +NFD  V+ SD VWIVE++APWCGHCQ    EY K A
Sbjct: 7   ILLLITGAHCLYSSNSDVIELKPNNFDSLVLNSDNVWIVEFFAPWCGHCQQLTPEYDKAA 66

Query: 61  TALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEA 120
           TALKG+VKVGAVNADE KSL S +G+ GFPT+KIF     P  Y G RTA  I+D AL A
Sbjct: 67  TALKGIVKVGAVNADEHKSLGSRYGIQGFPTIKIFGTDNKPEDYNGPRTATGIVDAALNA 126

Query: 121 IRQKVKGGKSGGRKGS------SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNL 174
             QK +    G R G       SK V+ELTD NF+K+V NS+D+WLVEF+APWCGHCKNL
Sbjct: 127 ASQKARRALGGKRSGGDSKSKDSKDVIELTDDNFDKMVMNSEDMWLVEFYAPWCGHCKNL 186

Query: 175 EPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR 234
            P W  AA+EL+GKVKLGA+DATV++  A ++ I+GYPTIK+F+PG +S    QEY+GGR
Sbjct: 187 APIWASAATELKGKVKLGAIDATVNRVKASQYEIKGYPTIKYFAPGKKSFDSVQEYDGGR 246

Query: 235 TSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNY 294
           TS DIV W+L K  ENVP PE+ QI++E T +E CED PLC+V+VLPHILDCQS CRN Y
Sbjct: 247 TSSDIVNWSLEKVAENVPAPEVVQIINEKTLREVCEDKPLCVVSVLPHILDCQSDCRNGY 306

Query: 295 LEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPF 354
           L++L  LG+KYKQK+WGW+W+EA AQP +E  LEIGGFGYPA+A +N KKMKYSLLKG F
Sbjct: 307 LKVLNDLGEKYKQKMWGWLWAEAGAQPHIEEALEIGGFGYPALAAVNIKKMKYSLLKGSF 366

Query: 355 SYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEE 401
           SYDGINEFLRDLSYGRG TAP+KGA LP I +   WDGKD ELPQEE
Sbjct: 367 SYDGINEFLRDLSYGRGGTAPLKGAQLPTILETKPWDGKDAELPQEE 413

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66551889|ref|XP_395981.2| PREDICTED: protein disulfide-isomerase A6-like isoform 1 [Apis mellifera]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/424 (62%), Positives = 324/424 (76%), Gaps = 9/424 (2%)

Query: 1   LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 60
           +LL ++  HCLY S SDVI L  +NFD+ V+ SD VW+VE++APWCGHCQ    EY K A
Sbjct: 7   ILLLISGAHCLY-SNSDVINLKPNNFDNLVLNSDNVWVVEFFAPWCGHCQMLTPEYNKAA 65

Query: 61  TALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEA 120
           TALKG+VKVGA+NADE KSL + +G+ GFPT+KIF     P  Y G RTA  I+D AL  
Sbjct: 66  TALKGIVKVGAINADEHKSLGAKYGIQGFPTIKIFGIDNKPEDYNGPRTAAGIVDAALNV 125

Query: 121 IRQKVK----GGKSGG--RKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNL 174
             QK +    G +S G  +   SK V+ELTD  F+ +V NSDD+WL+EF+APWCGHCKNL
Sbjct: 126 AGQKARKILGGKRSTGDFKSKDSKDVIELTDDTFDNIVMNSDDMWLIEFYAPWCGHCKNL 185

Query: 175 EPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR 234
            P W  AA+EL+GKVKLGA+DAT ++  A ++ I+GYPTIK+F+PG +S    QEY+GGR
Sbjct: 186 APIWASAATELKGKVKLGAIDATANRVKASQYEIKGYPTIKYFAPGKKSTDFVQEYDGGR 245

Query: 235 TSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNY 294
           TS DIV WAL K  ENVP PE+ QI++E   +E CE+ PLC+++VLPHILDCQS CRN Y
Sbjct: 246 TSSDIVNWALEKLAENVPAPEVLQIINEKGLREVCENKPLCVISVLPHILDCQSECRNGY 305

Query: 295 LEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPF 354
           L+IL +LG+KYKQK+WGW+W+EA AQP +E  LEIGGFGYPA+A +N KKMKYSLLKG F
Sbjct: 306 LKILNELGEKYKQKMWGWVWTEAGAQPHIEEALEIGGFGYPALAAVNIKKMKYSLLKGSF 365

Query: 355 SYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLP 414
           SYDGINEFLRDLSYGRG TAP+KGA LP I +  +WDGKD ELPQEE+IDLSD+DL++  
Sbjct: 366 SYDGINEFLRDLSYGRGGTAPLKGAQLPTILETKSWDGKDAELPQEEEIDLSDIDLDE-- 423

Query: 415 KDEF 418
           KDE 
Sbjct: 424 KDEL 427

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020212|gb|EGI60656.1| Protein disulfide-isomerase A6 [Acromyrmex echinatior]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/416 (63%), Positives = 319/416 (76%), Gaps = 8/416 (1%)

Query: 9   HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK 68
           +C+Y S S V+ L  +NFD+ V+ SD +W+VE+YAPWCGHCQ    EY K ATALKGVVK
Sbjct: 26  NCMYASNSAVVDLRPNNFDNLVLNSDHIWVVEFYAPWCGHCQQLTPEYDKAATALKGVVK 85

Query: 69  VGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVK-- 126
           VGAVNADE KSL S +GV GFPT+KIF   + P  Y G R+A  I+D AL A  QKV+  
Sbjct: 86  VGAVNADEHKSLGSKYGVRGFPTIKIFGLDKKPEDYNGPRSAAGIVDAALNAASQKVRKV 145

Query: 127 -GGKSGG---RKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAA 182
            GGK+ G   +   SK V+ELTD NF+K V NS+D+WLVEF+APWCGHCKNL P W  AA
Sbjct: 146 LGGKTSGGESKSKDSKDVIELTDENFDKTVLNSEDMWLVEFYAPWCGHCKNLAPEWATAA 205

Query: 183 SELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
           +EL+GKVKLGA+DATV+   A ++ I+GYPTIKFF+PG + A   Q+Y+GGRTS DIV W
Sbjct: 206 TELKGKVKLGALDATVNTLKASKYEIKGYPTIKFFAPGKKDADSMQDYDGGRTSGDIVNW 265

Query: 243 ALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLG 302
           AL K  EN+P PE+ QI SE   + ACED P+C+V+VLPHILDCQS CRN YL+ L  LG
Sbjct: 266 ALEKLAENIPAPEVVQITSEKKLRAACEDKPICVVSVLPHILDCQSDCRNGYLKTLSTLG 325

Query: 303 DKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEF 362
           +KYK+K+WGW+W+EA AQP +E+ LEIGGFGYPA+A +N KKMKYSLLKG FSYDGINEF
Sbjct: 326 EKYKKKMWGWVWAEAGAQPHIEDALEIGGFGYPALAAVNIKKMKYSLLKGSFSYDGINEF 385

Query: 363 LRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEF 418
           LRDLSYGRG TAP+KGA LP I +   WDGKD E PQEE+IDLSDV+L+D  KDE 
Sbjct: 386 LRDLSYGRGGTAPLKGAQLPVIIETTPWDGKDAEPPQEEEIDLSDVNLDD--KDEL 439

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794891|gb|EFZ17811.1| hypothetical protein SINV_06451 [Solenopsis invicta]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 265/416 (63%), Positives = 318/416 (76%), Gaps = 8/416 (1%)

Query: 9   HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK 68
           +C+Y S S V+ L  +NFD+ V+ SD +WIVE+YAPWCGHCQ    EY K ATALKGVVK
Sbjct: 26  NCMYASNSAVVDLRPNNFDNLVLNSDHIWIVEFYAPWCGHCQQLTPEYDKAATALKGVVK 85

Query: 69  VGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVK-- 126
           VGAVNADE KSL S +GV GFPT+KIF   + P  Y G R+A  I+D AL A  QKV+  
Sbjct: 86  VGAVNADEHKSLGSKYGVRGFPTIKIFGLDKKPEDYNGPRSAAGIVDAALNAASQKVRKV 145

Query: 127 -GGKSGGRKGSSKA---VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAA 182
            GGK+ G +  SK    V+ELTD NF+K V NS+D+WLVEF+APWCGHCKNL P W  AA
Sbjct: 146 LGGKTSGGESKSKDPKDVIELTDENFDKNVLNSEDMWLVEFYAPWCGHCKNLAPEWAAAA 205

Query: 183 SELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
           +EL+GKVKLGA+DATV+     ++ I+GYPTIKFF+PG + A   Q+Y+GGRTS DIV W
Sbjct: 206 TELKGKVKLGALDATVNTLKTSKYEIKGYPTIKFFAPGKKDADSVQDYDGGRTSGDIVNW 265

Query: 243 ALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLG 302
           AL K  EN+P PE+ QI SE   + ACED P+C+V+VLPHILDCQS CRN YL+ L  LG
Sbjct: 266 ALEKLAENIPAPEVMQITSEQKLRAACEDKPICVVSVLPHILDCQSDCRNGYLKTLSNLG 325

Query: 303 DKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEF 362
           +KYK+K+WGW+W+EA AQP +E+ LEIGGFGYPA+A +N KKMKYSLLKG FSYDGINEF
Sbjct: 326 EKYKKKMWGWVWAEAGAQPHIEDALEIGGFGYPALAAVNIKKMKYSLLKGSFSYDGINEF 385

Query: 363 LRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEF 418
           LRDLSYGRG TAP+KGA LP I +   WDGKD E PQEEDIDLSDV+L++  KDE 
Sbjct: 386 LRDLSYGRGGTAPLKGAQLPVIIETTPWDGKDAEPPQEEDIDLSDVNLDE--KDEL 439

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
FB|FBgn0025678	433	CaBP1 "calcium-binding protein	0.898	0.956	0.610	2.6e-143
WB|WBGene00015168	440	tag-320 [Caenorhabditis elegan	0.683	0.715	0.537	3.7e-131
ZFIN|ZDB-GENE-030131-879	440	pdip5 "protein disulfide isome	0.891	0.934	0.564	6.4e-131
UNIPROTKB|E2RB37	440	PDIA6 "Uncharacterized protein	0.874	0.915	0.575	2.2e-130
UNIPROTKB|A6QNL5	453	PDIA6 "PDIA6 protein" [Bos tau	0.882	0.898	0.570	2.2e-130
UNIPROTKB|E1CAJ6	440	pdi-p5 "Protein disulfide isom	0.882	0.925	0.570	3.5e-130
UNIPROTKB|B5MCQ5	488	PDIA6 "Protein disulfide-isome	0.882	0.834	0.565	1.1e-128
UNIPROTKB|B7Z254	437	PDIA6 "cDNA FLJ58502, highly s	0.882	0.931	0.565	1.1e-128
UNIPROTKB|F8WA83	445	PDIA6 "Protein disulfide-isome	0.882	0.914	0.565	1.1e-128
UNIPROTKB|Q15084	440	PDIA6 "Protein disulfide-isome	0.882	0.925	0.565	1.1e-128

FB|FBgn0025678 CaBP1 "calcium-binding protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
 Identities = 260/426 (61%), Positives = 315/426 (73%)

Query:     1 LLLTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 60
             L   V SV   Y     V++LT SNFD +V+K D +W+VE+YAPWCGHCQS   EY KLA
Sbjct:    10 LAFVVGSVSAFYSPSDGVVELTPSNFDREVLKDDAIWVVEFYAPWCGHCQSLVPEYKKLA 69

Query:    61 TALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALE 119
              ALKGVVKVG+VNAD + +LS   GV GFPT+KIF ++K++PT Y G RTA AI + AL 
Sbjct:    70 KALKGVVKVGSVNADADSTLSGQFGVRGFPTIKIFGANKKSPTDYNGQRTAKAIAEAALA 129

Query:   120 AIRQXXX--------XXXXXXXXXXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHC 171
              +++                          ELT+ NF+KLV NSDDIWLVEFFAPWCGHC
Sbjct:   130 EVKKKVQGVLGGGGGSSSGGSGSSSGDDVIELTEDNFDKLVLNSDDIWLVEFFAPWCGHC 189

Query:   172 KNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYN 231
             KNL P W KAA EL+GKVKLGA+DAT HQ  A E+N+RGYPTIKFF  GS+ ASDAQEY+
Sbjct:   190 KNLAPEWAKAAKELKGKVKLGALDATAHQSKAAEYNVRGYPTIKFFPAGSKRASDAQEYD 249

Query:   232 GGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCR 291
             GGRT+ DIV+WA +K+  NVP PE+ +I++E+TF+ ACE  PLC+V+VLPHILDC + CR
Sbjct:   250 GGRTASDIVSWASDKHVANVPAPELIEIINESTFETACEGKPLCVVSVLPHILDCDAKCR 309

Query:   292 NNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLK 351
             N +L+ L+ LG+K+KQK WGW W+E   Q  LE  LE+GGFGYPAMAV+N KKMK+S+LK
Sbjct:   310 NKFLDTLRTLGEKFKQKQWGWAWAEGGQQLALEESLEVGGFGYPAMAVVNFKKMKFSVLK 369

Query:   352 GPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLE 411
             G FS DGINEFLRD+SYGRGHTAPV+GA  P I  VD WDGKDG+LP EEDIDLSD+DL+
Sbjct:   370 GSFSKDGINEFLRDISYGRGHTAPVRGAKKPAIVSVDPWDGKDGQLPTEEDIDLSDIDLD 429

Query:   412 DLPKDE 417
                KDE
Sbjct:   430 ---KDE 432

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:2000427 "positive regulation of apoptotic cell clearance" evidence=IMP;IDA

WB|WBGene00015168 tag-320 [Caenorhabditis elegans (taxid:6239)]

 Score = 965 (344.8 bits), Expect = 3.7e-131, Sum P(2) = 3.7e-131
 Identities = 179/333 (53%), Positives = 229/333 (68%)

Query:    96 SDKRNPTPYQGARTADAIIDVALEAIRQXXXXXXXXXXXXXXXXXX-------------- 141
             +DK+ PT Y G RTA AI D  L   ++                                
Sbjct:   105 ADKKKPTDYNGQRTAQAIADSVLAEAKKAVSARLGGKSSGSSSSGSGSGSGKRGGGGSGN 164

Query:   142 ---ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
                ELTD+NFE LV NS DIWLVEFFAPWCGHCK+LEP W+ AASEL+GKV+LGA+DATV
Sbjct:   165 EVVELTDANFEDLVLNSKDIWLVEFFAPWCGHCKSLEPQWKAAASELKGKVRLGALDATV 224

Query:   199 HQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQ 258
             H  +A +F IRG+PTIK+F+PGS   SDAQ+Y+GGR S DIV WA  +  EN+P PE+ +
Sbjct:   225 HTVVANKFAIRGFPTIKYFAPGS-DVSDAQDYDGGRQSSDIVAWASARAQENMPAPEVFE 283

Query:   259 IVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAV 318
              +++   ++AC++  LCI A LPHILDCQS CRNNYL +L++  +K+K+ +WGWIW E  
Sbjct:   284 GINQQVVEDACKEKQLCIFAFLPHILDCQSECRNNYLAMLKEQSEKFKKNLWGWIWVEGA 343

Query:   319 AQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKG 378
             AQP LE   E+GGFGYPAM  LN +K KY++LKG F  DGI+EFLRDLSYG+G T+ ++G
Sbjct:   344 AQPALEESFEVGGFGYPAMTALNFRKNKYAVLKGSFGKDGIHEFLRDLSYGKGRTSSLRG 403

Query:   379 AALPQINQVDAWDGKDGELPQEEDIDLSDVDLE 411
                P+I + + WDGKDG LP E+DIDLSD+DL+
Sbjct:   404 DGFPKIQKTEKWDGKDGALPAEDDIDLSDIDLD 436

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

ZFIN|ZDB-GENE-030131-879 pdip5 "protein disulfide isomerase-related protein (provisional)" [Danio rerio (taxid:7955)]

 Score = 1284 (457.0 bits), Expect = 6.4e-131, P = 6.4e-131
 Identities = 244/432 (56%), Positives = 308/432 (71%)

Query:     3 LTVASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATA 62
             LTV S + LY S  DV++L  SNF+ +VI+SD +W+VE+YAPWCGHC+S   E+ K ATA
Sbjct:    12 LTVLSAYGLYTSSDDVVELNPSNFNREVIQSDSLWLVEFYAPWCGHCKSLAPEWKKAATA 71

Query:    63 LKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI 121
             LKG+VKVGAV+AD+  SL   +GV GFPT+KIF  +K  P  YQG RT  AI+D AL A+
Sbjct:    72 LKGIVKVGAVDADQHNSLGGQYGVRGFPTIKIFGGNKHKPEDYQGGRTNQAIVDAALNAL 131

Query:   122 RQ------------XXXXXXXXXXXXXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCG 169
             R                               ELTD NF++ V  SDD+WLVEFFAPWCG
Sbjct:   132 RSLVKDRLGGKTGGSDYSRQSGGGAGNKKDVVELTDDNFDRTVLESDDVWLVEFFAPWCG 191

Query:   170 HCKNLEPHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSAS 225
             HCKNLEP W  AA+E++    GKVKL AVDATVHQ +A  F IRG+PTIK F    R   
Sbjct:   192 HCKNLEPEWTAAATEVKEQTKGKVKLAAVDATVHQGLASRFGIRGFPTIKVF----RKGE 247

Query:   226 DAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILD 285
             + ++Y GGRT  DIV  AL  Y++N+P PE++++++E   K+ CED+ LCI+AVLPHILD
Sbjct:   248 EPEDYQGGRTRSDIVARALELYSDNIPAPELQEVLNEGILKKTCEDYQLCIIAVLPHILD 307

Query:   286 CQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKM 345
               +S RN+YLE+++ + +KYK+K+WGW+W+EA AQ +LE  L IGGFGYPAMA +N++KM
Sbjct:   308 TGASGRNSYLEVMKTMAEKYKKKMWGWLWTEAGAQMELEASLGIGGFGYPAMAAINSRKM 367

Query:   346 KYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDL 405
             K++LLKG FS  GI+EFLR+LS GRG TA V G ALP+IN V AWDGKDGELP E+DIDL
Sbjct:   368 KFALLKGSFSETGIHEFLRELSVGRGSTATVGGGALPKINTVQAWDGKDGELPMEDDIDL 427

Query:   406 SDVDLEDLPKDE 417
             SDVDL+DL KDE
Sbjct:   428 SDVDLDDLEKDE 439

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|E2RB37 PDIA6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1279 (455.3 bits), Expect = 2.2e-130, P = 2.2e-130
 Identities = 244/424 (57%), Positives = 308/424 (72%)

Query:    11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG 70
             LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K+ATALK VVKVG
Sbjct:    20 LYSSSDDVIELTPSNFNREVIQSDNLWLVEFYAPWCGHCQRLTPEWKKVATALKDVVKVG 79

Query:    71 AVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQX----- 124
             AV+AD+ +SL   +GV GFPT+KIF S+K  P  YQG+RT +AI+D AL A+RQ      
Sbjct:    80 AVDADKHQSLGGQYGVQGFPTIKIFGSNKNRPEDYQGSRTGEAIVDAALGALRQLVKDRL 139

Query:   125 -------XXXXXXXXXXXXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPH 177
                                     ELTD +F+K V +SDD+W+VEF+APWCGHCKNLEP 
Sbjct:   140 GGRGGGYSSGKQGRSESSNKKDVIELTDDSFDKNVLDSDDVWMVEFYAPWCGHCKNLEPE 199

Query:   178 WEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG 233
             W  AA+E++    GKVKL AVDATV+Q +A  + IRG+PTIK F  G        EY GG
Sbjct:   200 WAAAATEVKEQTKGKVKLAAVDATVNQLLASRYGIRGFPTIKIFQKGE----SPMEYEGG 255

Query:   234 RTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNN 293
             RT  DIV+ AL+ ++EN PPPE+ +I++E   K+ CE+H LC+VAVLPHILD  ++ RN+
Sbjct:   256 RTRSDIVSRALDLFSENAPPPELLEIINEDIAKKTCEEHQLCVVAVLPHILDTGAAGRNS 315

Query:   294 YLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGP 353
             YLE+L KL DKYK+K+WGW+W+EA AQ +LEN L IGGFGYPAMA +NA+KMK++LLKG 
Sbjct:   316 YLEVLLKLADKYKKKMWGWLWTEAGAQSELENALGIGGFGYPAMAAINARKMKFALLKGS 375

Query:   354 FSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDL 413
             FS  GINEFLR+LS+GRG TAPV G A P I+  + WDGKDGELP E+DIDLSDV+L+DL
Sbjct:   376 FSEQGINEFLRELSFGRGSTAPVGGGAFPTISTREPWDGKDGELPVEDDIDLSDVELDDL 435

Query:   414 PKDE 417
              +DE
Sbjct:   436 ERDE 439

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|A6QNL5 PDIA6 "PDIA6 protein" [Bos taurus (taxid:9913)]

 Score = 1279 (455.3 bits), Expect = 2.2e-130, P = 2.2e-130
 Identities = 244/428 (57%), Positives = 310/428 (72%)

Query:     7 SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV 66
             +V+ LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K ATALK V
Sbjct:    29 TVNGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALKDV 88

Query:    67 VKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQX- 124
             VKVGAV+AD+ +SL   +GV GFPT+KIF S+K  P  YQG RT +AI+D AL A+RQ  
Sbjct:    89 VKVGAVDADKHQSLGGQYGVQGFPTIKIFGSNKNKPEDYQGGRTGEAIVDAALSALRQLV 148

Query:   125 -----------XXXXXXXXXXXXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKN 173
                                         ELTD NF+K V +S+D+W+VEF+APWCGHCKN
Sbjct:   149 KDRLGGRGSGYSSGKQGRGDSSSKKDVIELTDDNFDKNVLDSEDVWMVEFYAPWCGHCKN 208

Query:   174 LEPHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE 229
             LEP W  AA+E++    GKVKL AVDATV+Q +A  + IRG+PTIK F  G        +
Sbjct:   209 LEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPV----D 264

Query:   230 YNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSS 289
             Y+GGRT  DIV+ AL+ +++N PPPE+ +I++E   K+ CE+H LC+VAVLPHILD  ++
Sbjct:   265 YDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDVAKKTCEEHQLCVVAVLPHILDTGAA 324

Query:   290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSL 349
              RN+YLE+L KL DKYK+K+WGW+W+EA AQ +LEN L IGGFGYPAMA +NA+KMK++L
Sbjct:   325 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELENALGIGGFGYPAMAAINARKMKFAL 384

Query:   350 LKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVD 409
             LKG FS  GINEFLR+LS+GRG TAPV G A P I+  + WDGKDGELP E+DIDLSDV+
Sbjct:   385 LKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTISTREPWDGKDGELPVEDDIDLSDVE 444

Query:   410 LEDLPKDE 417
             L+DL KDE
Sbjct:   445 LDDLEKDE 452

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|E1CAJ6 pdi-p5 "Protein disulfide isomerase P5" [Sus scrofa (taxid:9823)]

 Score = 1277 (454.6 bits), Expect = 3.5e-130, P = 3.5e-130
 Identities = 244/428 (57%), Positives = 311/428 (72%)

Query:     7 SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV 66
             +V+ LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K+ATALK V
Sbjct:    16 AVNGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKVATALKDV 75

Query:    67 VKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQX- 124
             VKVGAV+AD+ +SL   +GV GFPT+KIF S+K  P  YQG RT +AI+D AL A+RQ  
Sbjct:    76 VKVGAVDADKHQSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIVDAALSALRQLV 135

Query:   125 -----------XXXXXXXXXXXXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKN 173
                                         ELTD  F+K V +S+D+W+VEF+APWCGHCKN
Sbjct:   136 KDRLGGRGGGYSSGKQGRSEGSGKKDVIELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKN 195

Query:   174 LEPHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE 229
             LEP W  AA+E++    GKVKL AVDATV+Q +A  + IRG+PTIK F  G        +
Sbjct:   196 LEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPV----D 251

Query:   230 YNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSS 289
             Y+GGRT  DIVT AL+ +++N PPPE+ +I+SE   K++CE+H LC+VAVLPHILD  ++
Sbjct:   252 YDGGRTRSDIVTRALDLFSDNAPPPELLEIISEDVAKKSCEEHQLCVVAVLPHILDTGAA 311

Query:   290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSL 349
              RN+YLE+L KL DKYK+K+WGW+W+EA AQ +LE+ L IGGFGYPAMA +NA+KMK++L
Sbjct:   312 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQTELEHALGIGGFGYPAMAAINARKMKFAL 371

Query:   350 LKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVD 409
             LKG FS  GINEFLR+LS+GRG TAPV G A P I+  + WDGKDGELP E+DIDLSDV+
Sbjct:   372 LKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPAISTREPWDGKDGELPVEDDIDLSDVE 431

Query:   410 LEDLPKDE 417
             L+DL KDE
Sbjct:   432 LDDLEKDE 439

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|B5MCQ5 PDIA6 "Protein disulfide-isomerase A6" [Homo sapiens (taxid:9606)]

 Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
 Identities = 242/428 (56%), Positives = 307/428 (71%)

Query:     7 SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV 66
             +V+ LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K ATALK V
Sbjct:    64 AVNGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALKDV 123

Query:    67 VKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQX- 124
             VKVGAV+AD+  SL   +GV GFPT+KIF S+K  P  YQG RT +AI+D AL A+RQ  
Sbjct:   124 VKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIVDAALSALRQLV 183

Query:   125 -----------XXXXXXXXXXXXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKN 173
                                         ELTD +F+K V +S+D+W+VEF+APWCGHCKN
Sbjct:   184 KDRLGGRSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKN 243

Query:   174 LEPHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE 229
             LEP W  AASE++    GKVKL AVDATV+Q +A  + IRG+PTIK F  G        +
Sbjct:   244 LEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPV----D 299

Query:   230 YNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSS 289
             Y+GGRT  DIV+ AL+ +++N PPPE+ +I++E   K  CE+H LC+VAVLPHILD  ++
Sbjct:   300 YDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKRTCEEHQLCVVAVLPHILDTGAA 359

Query:   290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSL 349
              RN+YLE+L KL DKYK+K+WGW+W+EA AQ +LE  L IGGFGYPAMA +NA+KMK++L
Sbjct:   360 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAMAAINARKMKFAL 419

Query:   350 LKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVD 409
             LKG FS  GINEFLR+LS+GRG TAPV G A P I + + WDG+DGELP E+DIDLSDV+
Sbjct:   420 LKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLSDVE 479

Query:   410 LEDLPKDE 417
             L+DL KDE
Sbjct:   480 LDDLGKDE 487

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|B7Z254 PDIA6 "cDNA FLJ58502, highly similar to Protein disulfide-isomerase A6 (EC 5.3.4.1)" [Homo sapiens (taxid:9606)]

 Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
 Identities = 242/428 (56%), Positives = 307/428 (71%)

Query:     7 SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV 66
             +V+ LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K ATALK V
Sbjct:    13 AVNGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALKDV 72

Query:    67 VKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQX- 124
             VKVGAV+AD+  SL   +GV GFPT+KIF S+K  P  YQG RT +AI+D AL A+RQ  
Sbjct:    73 VKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIVDAALSALRQLV 132

Query:   125 -----------XXXXXXXXXXXXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKN 173
                                         ELTD +F+K V +S+D+W+VEF+APWCGHCKN
Sbjct:   133 KDRLGGRSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKN 192

Query:   174 LEPHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE 229
             LEP W  AASE++    GKVKL AVDATV+Q +A  + IRG+PTIK F  G        +
Sbjct:   193 LEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPV----D 248

Query:   230 YNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSS 289
             Y+GGRT  DIV+ AL+ +++N PPPE+ +I++E   K  CE+H LC+VAVLPHILD  ++
Sbjct:   249 YDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKRTCEEHQLCVVAVLPHILDTGAA 308

Query:   290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSL 349
              RN+YLE+L KL DKYK+K+WGW+W+EA AQ +LE  L IGGFGYPAMA +NA+KMK++L
Sbjct:   309 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAMAAINARKMKFAL 368

Query:   350 LKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVD 409
             LKG FS  GINEFLR+LS+GRG TAPV G A P I + + WDG+DGELP E+DIDLSDV+
Sbjct:   369 LKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLSDVE 428

Query:   410 LEDLPKDE 417
             L+DL KDE
Sbjct:   429 LDDLGKDE 436

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

UNIPROTKB|F8WA83 PDIA6 "Protein disulfide-isomerase A6" [Homo sapiens (taxid:9606)]

 Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
 Identities = 242/428 (56%), Positives = 307/428 (71%)

Query:     7 SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV 66
             +V+ LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K ATALK V
Sbjct:    21 AVNGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALKDV 80

Query:    67 VKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQX- 124
             VKVGAV+AD+  SL   +GV GFPT+KIF S+K  P  YQG RT +AI+D AL A+RQ  
Sbjct:    81 VKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIVDAALSALRQLV 140

Query:   125 -----------XXXXXXXXXXXXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKN 173
                                         ELTD +F+K V +S+D+W+VEF+APWCGHCKN
Sbjct:   141 KDRLGGRSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKN 200

Query:   174 LEPHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE 229
             LEP W  AASE++    GKVKL AVDATV+Q +A  + IRG+PTIK F  G        +
Sbjct:   201 LEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPV----D 256

Query:   230 YNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSS 289
             Y+GGRT  DIV+ AL+ +++N PPPE+ +I++E   K  CE+H LC+VAVLPHILD  ++
Sbjct:   257 YDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKRTCEEHQLCVVAVLPHILDTGAA 316

Query:   290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSL 349
              RN+YLE+L KL DKYK+K+WGW+W+EA AQ +LE  L IGGFGYPAMA +NA+KMK++L
Sbjct:   317 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAMAAINARKMKFAL 376

Query:   350 LKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVD 409
             LKG FS  GINEFLR+LS+GRG TAPV G A P I + + WDG+DGELP E+DIDLSDV+
Sbjct:   377 LKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLSDVE 436

Query:   410 LEDLPKDE 417
             L+DL KDE
Sbjct:   437 LDDLGKDE 444

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q15084 PDIA6 "Protein disulfide-isomerase A6" [Homo sapiens (taxid:9606)]

 Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
 Identities = 242/428 (56%), Positives = 307/428 (71%)

Query:     7 SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV 66
             +V+ LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K ATALK V
Sbjct:    16 AVNGLYSSSDDVIELTPSNFNREVIQSDSLWLVEFYAPWCGHCQRLTPEWKKAATALKDV 75

Query:    67 VKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQX- 124
             VKVGAV+AD+  SL   +GV GFPT+KIF S+K  P  YQG RT +AI+D AL A+RQ  
Sbjct:    76 VKVGAVDADKHHSLGGQYGVQGFPTIKIFGSNKNRPEDYQGGRTGEAIVDAALSALRQLV 135

Query:   125 -----------XXXXXXXXXXXXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKN 173
                                         ELTD +F+K V +S+D+W+VEF+APWCGHCKN
Sbjct:   136 KDRLGGRSGGYSSGKQGRSDSSSKKDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKN 195

Query:   174 LEPHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE 229
             LEP W  AASE++    GKVKL AVDATV+Q +A  + IRG+PTIK F  G        +
Sbjct:   196 LEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPV----D 251

Query:   230 YNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSS 289
             Y+GGRT  DIV+ AL+ +++N PPPE+ +I++E   K  CE+H LC+VAVLPHILD  ++
Sbjct:   252 YDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAKRTCEEHQLCVVAVLPHILDTGAA 311

Query:   290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSL 349
              RN+YLE+L KL DKYK+K+WGW+W+EA AQ +LE  L IGGFGYPAMA +NA+KMK++L
Sbjct:   312 GRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAMAAINARKMKFAL 371

Query:   350 LKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVD 409
             LKG FS  GINEFLR+LS+GRG TAPV G A P I + + WDG+DGELP E+DIDLSDV+
Sbjct:   372 LKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLSDVE 431

Query:   410 LEDLPKDE 417
             L+DL KDE
Sbjct:   432 LDDLGKDE 439

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006457 "protein folding" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R6T1	PDIA6_PONAB	5, ., 3, ., 4, ., 1	0.5864	0.8828	0.925	yes	N/A
Q15084	PDIA6_HUMAN	5, ., 3, ., 4, ., 1	0.5850	0.8850	0.9272	yes	N/A
Q9MAU6	PDI22_ARATH	5, ., 3, ., 4, ., 1	0.4234	0.8568	0.8836	yes	N/A
Q67UF5	PDI23_ORYSJ	5, ., 3, ., 4, ., 1	0.3806	0.8763	0.9160	yes	N/A
P38660	PDIA6_MESAU	5, ., 3, ., 4, ., 1	0.5835	0.8741	0.9179	N/A	N/A
Q11067	PDIA6_CAEEL	5, ., 3, ., 4, ., 1	0.5480	0.8611	0.9022	yes	N/A
Q63081	PDIA6_RAT	5, ., 3, ., 4, ., 1	0.5827	0.8850	0.9272	yes	N/A
Q922R8	PDIA6_MOUSE	5, ., 3, ., 4, ., 1	0.5850	0.8850	0.9272	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	461
cd02983	130	cd02983, P5_C, P5 family, C-terminal redox inactiv	1e-70
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	3e-59
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	7e-48
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	6e-44
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	5e-42
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	1e-37
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	7e-37
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	9e-34
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	2e-32
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	2e-31
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	6e-31
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	2e-30
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	6e-30
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	7e-30
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	2e-29
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	5e-29
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	7e-29
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	9e-27
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	1e-25
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	1e-25
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	1e-25
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	2e-25
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	3e-23
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	1e-22
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	7e-22
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	4e-20
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	6e-20
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	3e-18
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	3e-18
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	4e-17
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	3e-16
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	4e-16
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	4e-16
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	5e-16
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	1e-15
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	2e-15
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	5e-15
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	1e-14
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	2e-14
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	7e-14
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	9e-14
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	2e-13
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	7e-13
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	7e-13
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	8e-13
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	1e-12
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	2e-12
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	3e-12
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	4e-12
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	2e-11
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	3e-11
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	3e-11
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	7e-11
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	2e-10
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	5e-10
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	7e-10
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	1e-09
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	2e-09
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	4e-09
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	6e-09
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	6e-09
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	9e-09
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	1e-08
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	1e-08
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	3e-08
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	7e-08
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	1e-07
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	2e-07
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	2e-07
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	3e-07
cd03006	113	cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP	4e-07
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	5e-07
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	5e-07
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	8e-07
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	1e-06
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	1e-06
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	1e-06
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	2e-06
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	3e-06
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	3e-06
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	7e-06
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	3e-05
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	5e-05
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	2e-04
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	2e-04
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	2e-04
cd02953	104	cd02953, DsbDgamma, DsbD gamma family; DsbD gamma	4e-04
cd02972	98	cd02972, DsbA_family, DsbA family; consists of Dsb	4e-04
cd02963	111	cd02963, TRX_DnaJ, TRX domain, DnaJ domain contain	6e-04
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	0.001
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	0.001
cd03006	113	cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP	0.001
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	0.001
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	0.002
pfam07243	527	pfam07243, Phlebovirus_G1, Phlebovirus glycoprotei	0.002
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	0.003

>gnl|CDD|239281 cd02983, P5_C, P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score =  219 bits (560), Expect = 1e-70
 Identities = 81/130 (62%), Positives = 99/130 (76%)

Query: 253 PPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGW 312
            PEI ++ SE  F+E CE+  LCI+A LPHILDCQ+SCRN YLEIL+ + +K+K+K WGW
Sbjct: 1   APEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGW 60

Query: 313 IWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGH 372
           +W+EA AQ DLE  L IGGFGYPAM  +N +KMK++ LKG FS DGINEFLR+LSYGRG 
Sbjct: 61  LWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRGP 120

Query: 373 TAPVKGAALP 382
           T PV G    
Sbjct: 121 TLPVNGLPKV 130

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. Length = 130

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score =  189 bits (481), Expect = 3e-59
 Identities = 66/106 (62%), Positives = 82/106 (77%), Gaps = 3/106 (2%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
            VVELTDSNF+K V NSDD+WLVEF+APWCGHCKNL P W+KAA  L+G VK+GAVDA V
Sbjct: 1   DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV 60

Query: 199 HQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL 244
           HQ +A ++ +RG+PTIK F  G    +  Q+Y GGRT++ IV+ AL
Sbjct: 61  HQSLAQQYGVRGFPTIKVFGAG---KNSPQDYQGGRTAKAIVSAAL 103

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score =  159 bits (405), Expect = 7e-48
 Identities = 61/103 (59%), Positives = 80/103 (77%), Gaps = 1/103 (0%)

Query: 17  DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE 76
           DV++LT SNFD KV+ SD+VW+VE+YAPWCGHC++   E+ K A ALKG+VKVGAV+AD 
Sbjct: 1   DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV 60

Query: 77  EKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVAL 118
            +SL+  +GV GFPT+K+F + K +P  YQG RTA AI+  AL
Sbjct: 61  HQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAAL 103

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  159 bits (405), Expect = 6e-44
 Identities = 112/452 (24%), Positives = 183/452 (40%), Gaps = 67/452 (14%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK---GVVKVGAV 72
            DV+ LT  NFDD  IKS E  +VE+YAPWCGHC+S   EY K A  LK     +K+  V
Sbjct: 1   EDVLVLTKDNFDD-FIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKV 59

Query: 73  NADEEKSLSSSHGVTGFPTVKIFSD-KRNPTPYQGARTADAIIDVALEAIRQKVKGGKSG 131
           +A EEK L+  +GV+G+PT+KIF + + + + Y G R AD I+                 
Sbjct: 60  DATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYM-------------- 105

Query: 132 GRKGSSKAVVELTD-SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVK 190
            +K S  AV E+   ++ E  +   DD+ ++ FF       +  +     A    +    
Sbjct: 106 -KKQSGPAVKEIETVADLEAFL-ADDDVVVIGFFKDLDS--ELNDTFLSVAEKLRDVYFF 161

Query: 191 LGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTEN 250
                        G F       + F            +        D+  +      E+
Sbjct: 162 FAHSSDVAAFAKLGAFPDS---VVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIR---AES 215

Query: 251 VPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVW 310
           +P       V E T + A +      + VL + +D              +   K++ K  
Sbjct: 216 LPL------VGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFV 269

Query: 311 GW-IWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKM-KYSLLKGPFSYDGINEFLRDLSY 368
            + +  E     +LE    +    +PA+A+ + +   KY + +  FS + +  F++D   
Sbjct: 270 NFAVADEEDFGRELEY-FGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLD 328

Query: 369 GRGHTAPVKGAALPQINQ--VDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIK 426
           G+     +K   +P+ ++  V    GK                         NFD+ V+ 
Sbjct: 329 GK-LKPYLKSEPIPEDDEGPVKVLVGK-------------------------NFDEIVLD 362

Query: 427 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
             +  +VE+YAPWCGHC++    Y +LA   K
Sbjct: 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYK 394

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  144 bits (365), Expect = 5e-42
 Identities = 52/105 (49%), Positives = 69/105 (65%), Gaps = 6/105 (5%)

Query: 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATV 198
           VELTD NF++LV +S D  LVEF+APWCGHCK L P +EK A EL+  GKV +  VD T 
Sbjct: 1   VELTDDNFDELVKDSKD-VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA 59

Query: 199 HQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243
           +  +  E+ +RGYPTIK F  GS+   +  +Y G RT + +V + 
Sbjct: 60  NNDLCSEYGVRGYPTIKLFPNGSK---EPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  132 bits (334), Expect = 1e-37
 Identities = 49/108 (45%), Positives = 67/108 (62%), Gaps = 8/108 (7%)

Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVHQ 200
           LT SNF+++V  S+   LVEF+APWCGHCKNL P +EK A EL+    + L  VDAT  +
Sbjct: 1   LTASNFDEIV-LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEK 59

Query: 201 RIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYT 248
            +A  F + G+PTIKFF  G        +Y GGR  + IV + +N+ +
Sbjct: 60  DLASRFGVSGFPTIKFFPKG----KKPVDYEGGRDLEAIVEF-VNEKS 102

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score =  130 bits (329), Expect = 7e-37
 Identities = 47/104 (45%), Positives = 62/104 (59%), Gaps = 4/104 (3%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
           V  LTD NF++ V  SD   LV+F+APWCG CK L P +EK A E +  VK   VDA  +
Sbjct: 2   VKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADEN 61

Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243
             +A E+ +RG+PTIKFF  G +      +Y G RT  D+V + 
Sbjct: 62  PDLASEYGVRGFPTIKFFKNGKK----VSDYVGARTKDDLVAFI 101

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  121 bits (307), Expect = 9e-34
 Identities = 41/100 (41%), Positives = 64/100 (64%), Gaps = 4/100 (4%)

Query: 19  IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADE 76
           ++LT  NFD+ ++K  +  +VE+YAPWCGHC++   EY KLA  LK  G V V  V+   
Sbjct: 1   VELTDDNFDE-LVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA 59

Query: 77  EKSLSSSHGVTGFPTVKIFSD-KRNPTPYQGARTADAIID 115
              L S +GV G+PT+K+F +  + P  Y+G RT +++++
Sbjct: 60  NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVE 99

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  118 bits (299), Expect = 2e-32
 Identities = 44/97 (45%), Positives = 64/97 (65%), Gaps = 3/97 (3%)

Query: 21  LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG--VVKVGAVNADEEK 78
           LT SNFD+ ++ S++  +VE+YAPWCGHC++   EY KLA  LK    + +  V+A  EK
Sbjct: 1   LTASNFDE-IVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEK 59

Query: 79  SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
            L+S  GV+GFPT+K F   + P  Y+G R  +AI++
Sbjct: 60  DLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVE 96

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score =  115 bits (291), Expect = 2e-31
 Identities = 46/99 (46%), Positives = 63/99 (63%)

Query: 17  DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE 76
            V  LT  NFD++V KSD+  +V++YAPWCG C++   EY KLA   K  VK   V+ADE
Sbjct: 1   VVKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADE 60

Query: 77  EKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
              L+S +GV GFPT+K F + +  + Y GART D ++ 
Sbjct: 61  NPDLASEYGVRGFPTIKFFKNGKKVSDYVGARTKDDLVA 99

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score =  114 bits (288), Expect = 6e-31
 Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 4/107 (3%)

Query: 138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
            +V+ LT  +F +LV N  + WLV+F+APWCG C+ L P   KAA  L+GKVK+G+VD  
Sbjct: 1   PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ 60

Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG-GRTSQDIVTWA 243
            ++ +  + NIR YPTI+ +      AS    YNG  R +  I+ + 
Sbjct: 61  KYESLCQQANIRAYPTIRLYPGN---ASKYHSYNGWHRDADSILEFI 104

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score =  113 bits (285), Expect = 2e-30
 Identities = 49/107 (45%), Positives = 70/107 (65%), Gaps = 6/107 (5%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAAS--ELEGKVKLGAVDA 196
            VVELTDSNF+K+V +     LVEF+APWCGHCKNL P +EK A+    E  V +  VDA
Sbjct: 1   NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA 60

Query: 197 T-VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
              ++ +A ++ + G+PT+KFF  GS   ++  +Y GGR  +D+V +
Sbjct: 61  DEANKDLAKKYGVSGFPTLKFFPKGS---TEPVKYEGGRDLEDLVKF 104

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score =  121 bits (305), Expect = 6e-30
 Identities = 52/109 (47%), Positives = 72/109 (66%), Gaps = 9/109 (8%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAA---SELEGKVKLGA 193
           S+ V  LTDS F+K +   ++I LV+F+APWCGHCK L P ++KAA    E + ++ L +
Sbjct: 31  SEHVTVLTDSTFDKFI-TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLAS 89

Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
           VDAT    +A EF +RGYPTIKFF+ G+        Y+GGRT+  IV+W
Sbjct: 90  VDATEEMELAQEFGVRGYPTIKFFNKGNP-----VNYSGGRTADGIVSW 133

Length = 477

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score =  111 bits (280), Expect = 7e-30
 Identities = 50/108 (46%), Positives = 77/108 (71%), Gaps = 3/108 (2%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV--DAT 197
           V ELT  NF+K+V+N++   LVEF+APWCGHCKNL+P + KAA EL+G V++ AV  D  
Sbjct: 2   VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED 61

Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE-YNGGRTSQDIVTWAL 244
            ++ + G++ ++G+PT+K F P  +++  A E YNG R+++ IV + L
Sbjct: 62  KNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score =  110 bits (276), Expect = 2e-29
 Identities = 46/108 (42%), Positives = 67/108 (62%), Gaps = 9/108 (8%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL--EGKVKLGAVDA 196
            VV LTD +F K +     + LV F+APWCGHCK ++P + KAA+EL  +GK  L AVD 
Sbjct: 1   DVVHLTDEDFRKFLKKEKHV-LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDC 59

Query: 197 TV--HQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
           T   H  +  E+N++G+PT K+F  G       ++Y G RT++DI+ +
Sbjct: 60  TKPEHDALKEEYNVKGFPTFKYFENGKFV----EKYEGERTAEDIIEF 103

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score =  109 bits (275), Expect = 5e-29
 Identities = 49/108 (45%), Positives = 66/108 (61%), Gaps = 7/108 (6%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
           V +LT  NFD  V  ++   +VE+YAPWCGHC++ K EY K A  L G+V+V AV+ DE+
Sbjct: 2   VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED 61

Query: 78  --KSLSSSHGVTGFPTVKIF-----SDKRNPTPYQGARTADAIIDVAL 118
             K L   +GV GFPT+K+F     + K     Y G R+A AI+D  L
Sbjct: 62  KNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score =  109 bits (273), Expect = 7e-29
 Identities = 49/109 (44%), Positives = 64/109 (58%), Gaps = 11/109 (10%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVD 195
            V++L DS  +      +DIWLV+F+APWCGHCK LEP W +  +EL+     V++G +D
Sbjct: 1   LVLDLDDSFKD---VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLD 57

Query: 196 ATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL 244
           AT +  IA EF +RGYPTIK           A  Y G RT  DIV +A 
Sbjct: 58  ATAYSSIASEFGVRGYPTIKLLKGDL-----AYNYRGPRTKDDIVEFAN 101

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score =  103 bits (258), Expect = 9e-27
 Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 9/107 (8%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE---GKVKLGAVD 195
            V+ELT+ NF+  +  ++    V+FFAPWCGHCK L P WE+ A +       VK+  VD
Sbjct: 1   GVLELTEDNFDHHI--AEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVD 58

Query: 196 ATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
            T H+ +  EF +RGYPT+  F  G +      +Y G R    +  +
Sbjct: 59  CTQHRELCSEFQVRGYPTLLLFKDGEK----VDKYKGTRDLDSLKEF 101

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score =  100 bits (250), Expect = 1e-25
 Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
             VI LT  +F + V+   E W+V++YAPWCG CQ+   E  K A ALKG VKVG+V+  
Sbjct: 1   PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ 60

Query: 76  EEKSLSSSHGVTGFPTVKIFSDKR-NPTPYQG-ARTADAIID 115
           + +SL     +  +PT++++         Y G  R AD+I++
Sbjct: 61  KYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILE 102

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score =  100 bits (250), Expect = 1e-25
 Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 4/102 (3%)

Query: 17  DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV--VKVGAVNA 74
           +V++LT SNFD  V    +  +VE+YAPWCGHC++   EY KLA        V +  V+A
Sbjct: 1   NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA 60

Query: 75  DEE-KSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAII 114
           DE  K L+  +GV+GFPT+K F      P  Y+G R  + ++
Sbjct: 61  DEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLV 102

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score =  104 bits (260), Expect = 1e-25
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 8/120 (6%)

Query: 139 AVVELTDSNFEKLVYNSDDI----WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV 194
           A+V L D NFEKL   S       W V+F+APWC HC+ + P WE+ A  L+G+V +  +
Sbjct: 31  ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADL 90

Query: 195 DATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPP 254
           DAT    +A  F I+GYPT+  F  G       Q   G R+++ +  +AL  + + +  P
Sbjct: 91  DATRALNLAKRFAIKGYPTLLLFDKGKMY----QYEGGDRSTEKLAAFALGDFKKALGAP 146

Length = 224

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 99.6 bits (249), Expect = 2e-25
 Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 5/105 (4%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDAT 197
           V  +   NF+++V +SD   LVEF+APWCGHCK L P +E+ A +L+G   V +  +DAT
Sbjct: 2   VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61

Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
            +  +  EF + G+PTI FF  G +S     +Y G RT +D++ +
Sbjct: 62  AND-VPSEFVVDGFPTILFFPAGDKSNP--IKYEGDRTLEDLIKF 103

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 93.9 bits (234), Expect = 3e-23
 Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE---GKVKLGAVD 195
            V+ L  ++F   +  S   WLVEF+A WCGHC+   P W+K A +L      V++ AVD
Sbjct: 2   PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD 61

Query: 196 --ATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243
                +  +  +F + GYPT+++F P S+ A+D  +  G    +D+    
Sbjct: 62  CADEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQEG--PERDVNELR 109

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 99.4 bits (248), Expect = 1e-22
 Identities = 56/208 (26%), Positives = 87/208 (41%), Gaps = 28/208 (13%)

Query: 50  QSFKDEYMKLATALKGV-VKVGAVNADEEKSLSSSHGV--TGFPTVKIFS-DKRNPTPYQ 105
           +  ++ +++ A   +G  V     + ++        G+    FP V I   +     P  
Sbjct: 251 EELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMD 310

Query: 106 GARTADAIIDVALEAIRQKVKGGKSGGRKGSSKA----------VVELTDSNFEKLVYNS 155
               +        E +   VK    G  K   K+          V  L   NF+++V + 
Sbjct: 311 QEEFSS-------ENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDE 363

Query: 156 DDIWLVEFFAPWCGHCKNLEPHWEKAASEL---EGKVKLGAVDATVHQRIAGEFNIRGYP 212
               LVEF+APWCGHCKNL P +E+ A +    E  V +  +DAT +      F + G+P
Sbjct: 364 TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPPFEVEGFP 421

Query: 213 TIKFFSPGSRSASDAQEYNGGRTSQDIV 240
           TIKF   G +S      Y+G RT +D  
Sbjct: 422 TIKFVPAGKKSEP--VPYDGDRTLEDFS 447

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 97.5 bits (243), Expect = 7e-22
 Identities = 46/103 (44%), Positives = 61/103 (59%), Gaps = 5/103 (4%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK---GVVKVGAV 72
             V  LT S FD K I  +E+ +V++YAPWCGHC+    EY K A  LK     + + +V
Sbjct: 32  EHVTVLTDSTFD-KFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASV 90

Query: 73  NADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
           +A EE  L+   GV G+PT+K F+ K NP  Y G RTAD I+ 
Sbjct: 91  DATEEMELAQEFGVRGYPTIKFFN-KGNPVNYSGGRTADGIVS 132

Length = 477

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 84.6 bits (210), Expect = 4e-20
 Identities = 34/78 (43%), Positives = 49/78 (62%)

Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD+NF++ + +SD   LV+F+APWCG CK + P  E+ A E EGKVK   ++   +  I
Sbjct: 1   LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDI 60

Query: 203 AGEFNIRGYPTIKFFSPG 220
           A ++ IR  PT+  F  G
Sbjct: 61  AAKYGIRSIPTLLLFKNG 78

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 84.3 bits (209), Expect = 6e-20
 Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 5/103 (4%)

Query: 17  DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNA 74
           DV+ LT  +F  K +K ++  +V +YAPWCGHC+  K E+ K AT LK  G   + AV+ 
Sbjct: 1   DVVHLTDEDFR-KFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDC 59

Query: 75  --DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
              E  +L   + V GFPT K F + +    Y+G RTA+ II+
Sbjct: 60  TKPEHDALKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIE 102

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 79.5 bits (197), Expect = 3e-18
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV--VKVGAVNAD 75
           V  +   NFD+ V+ SD+  +VE+YAPWCGHC++    Y +LA  LKG   V +  ++A 
Sbjct: 2   VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61

Query: 76  EEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIID 115
               + S   V GFPT+  F   DK NP  Y+G RT + +I 
Sbjct: 62  -ANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIK 102

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 79.5 bits (196), Expect = 3e-18
 Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 1/101 (0%)

Query: 17  DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE 76
           +++ L   +FD  V  S E+W V +Y+P C HC      + + A  + GV+++GAVN  +
Sbjct: 2   EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD 60

Query: 77  EKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVA 117
           ++ L  S GV  +P++ +F    NP  Y G R+ ++++  A
Sbjct: 61  DRMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVKFA 101

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 76.2 bits (188), Expect = 4e-17
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           NFD KV+ SD+VW+VE+YAPWCGHC++   E+ K A ALK
Sbjct: 9   NFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALK 48

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 8/112 (7%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK---GVVKVGAVN- 73
           VI L  ++F+  ++ S   W+VE+YA WCGHC++F   + KLA  L+    VV+V AV+ 
Sbjct: 3   VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDC 62

Query: 74  ADEEKS-LSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQK 124
           ADEE   L    GVTG+PT++ F          G +      DV    +R+ 
Sbjct: 63  ADEENVALCRDFGVTGYPTLRYFPPFSKEAT-DGLKQEGPERDV--NELREA 111

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 73.7 bits (181), Expect = 4e-16
 Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 5/104 (4%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
           +V L   +F+  V NS +IW V F++P C HC +L P W + A E++G +++GAV+    
Sbjct: 3   IVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD 61

Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243
           + +     +  YP++  F     S  + ++Y G R+ + +V +A
Sbjct: 62  RMLCRSQGVNSYPSLYVF----PSGMNPEKYYGDRSKESLVKFA 101

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 135 GSSKAVVELTDSNFEKLVYNSDDIW--LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLG 192
            ++  + ++T++NFE+ V  S      LV+F+APWCG CK L P  EK A+E +GK KL 
Sbjct: 20  MAAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLA 79

Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPG 220
            V+      +A +F ++  PT+  F  G
Sbjct: 80  KVNCDAEPMVAAQFGVQSIPTVYAFKDG 107

Length = 304

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 73.3 bits (180), Expect = 5e-16
 Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 6/97 (6%)

Query: 27  DDKVI--KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV---VKVGAVNADEEKSLS 81
           DD     + +++W+V++YAPWCGHC+  +  + ++   LK     V+VG ++A    S++
Sbjct: 6   DDSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIA 65

Query: 82  SSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVAL 118
           S  GV G+PT+K+         Y+G RT D I++ A 
Sbjct: 66  SEFGVRGYPTIKLLKGDLAYN-YRGPRTKDDIVEFAN 101

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 71.4 bits (176), Expect = 1e-15
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE 205
             FE+L+ ++  + +V+F+APWCG CK + P  E+ A E   KVK   VD   +  +A E
Sbjct: 1   EEFEELIKSAKPV-VVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEE 58

Query: 206 FNIRGYPTIKFF 217
           + +R  PT  FF
Sbjct: 59  YGVRSIPTFLFF 70

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV---VKVGAV 72
             V  L   NFD+ V+   +  +VE+YAPWCGHC++    Y +LA   K     V +  +
Sbjct: 346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKM 405

Query: 73  NADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIID 115
           +A           V GFPT+K      K  P PY G RT +    
Sbjct: 406 DATAND--VPPFEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSK 448

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 70.4 bits (173), Expect = 5e-15
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 5/101 (4%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV---VKVGAVNA 74
           V++LT  NFD  +  ++    V+++APWCGHC+     + +LA         VK+  V+ 
Sbjct: 2   VLELTEDNFDHHI--AEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC 59

Query: 75  DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
            + + L S   V G+PT+ +F D      Y+G R  D++ +
Sbjct: 60  TQHRELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKE 100

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 15/199 (7%)

Query: 52  FKDEYMKLATALKGVVKVGAVNADEEKSLSSSH-GVTGFPTVKIFSDKRN---PTPYQGA 107
           +K    K+A  L+       ++ ++  S +  H  +  FP +   S       P   +  
Sbjct: 265 YKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGRYLLPPAKESF 324

Query: 108 RTADAII----DVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEF 163
            + +A+I    DV    + + +K       +     V  +  + FE++V+ SD   L+E 
Sbjct: 325 DSVEALIEFFKDVEAGKVEKSIKSEPI--PEEQDGPVKVVVGNTFEEIVFKSDKDVLLEI 382

Query: 164 FAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGS 221
           +APWCGHCKNLEP + +   + +    + +  ++ T ++    EF+   +PTI F   G 
Sbjct: 383 YAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGE 442

Query: 222 RSASDAQEYNGGRTSQDIV 240
           R       Y G RT +   
Sbjct: 443 R---TPIPYEGERTVEGFK 458

Length = 477

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 123 QKVKGGKSGGRKGSS---KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWE 179
           ++++     GR G       V+  T    +KL+   D   +++F+APWCG C+N  P +E
Sbjct: 17  ERIEDAAKCGRCGHDLFDGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFE 75

Query: 180 KAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSR 222
             A+E  GKV+   V+    + ++  F IR  PTI  F  G  
Sbjct: 76  DVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQV 118

Length = 139

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 67.0 bits (164), Expect = 7e-14
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 9/104 (8%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV 198
           VVELTDSN+  ++   +  W++EF+APWC  C+ L+P WE+ A   +   + +  VD T 
Sbjct: 3   VVELTDSNWTLVL---EGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ 59

Query: 199 HQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
              ++G F +   PTI     G       + Y G R  +D++++
Sbjct: 60  EPGLSGRFFVTALPTIYHAKDG-----VFRRYQGPRDKEDLISF 98

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 66.9 bits (164), Expect = 9e-14
 Identities = 29/95 (30%), Positives = 51/95 (53%)

Query: 21  LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL 80
           LT +NFD+ +  SD+  +V+++APWCG C+       +LA   +G VK   +N DE   +
Sbjct: 1   LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDI 60

Query: 81  SSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
           ++ +G+   PT+ +F + +      GA    A+  
Sbjct: 61  AAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQ 95

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSS 83
            F++ +  +  V +V+++APWCG C++      +LA      VK   V+ DE   L+  
Sbjct: 1  EEFEELIKSAKPV-VVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEE 58

Query: 84 HGVTGFPTVKIFSD 97
          +GV   PT   F +
Sbjct: 59 YGVRSIPTFLFFKN 72

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 64.2 bits (157), Expect = 7e-13
 Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           NFD+ ++K  +  +VE+YAPWCGHC++   EY KLA  LK
Sbjct: 7   NFDE-LVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELK 45

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 68.9 bits (169), Expect = 7e-13
 Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 2/98 (2%)

Query: 18  VIKLTTSNFDDKVIK-SDEV-WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
           +  +T +NF+ +VI+ S EV  +V+++APWCG C+       KLA   KG  K+  VN D
Sbjct: 25  IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD 84

Query: 76  EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113
            E  +++  GV   PTV  F D +    +QGA+    +
Sbjct: 85  AEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQL 122

Length = 304

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 64.3 bits (156), Expect = 8e-13
 Identities = 31/101 (30%), Positives = 55/101 (54%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
           S  ++ LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++ 
Sbjct: 2   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 61

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
             +   A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 62  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 102

Length = 109

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 67.0 bits (163), Expect = 1e-12
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 16  SDVIKLTTSNFDDKVIKSDEV----WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
           + ++ L   NF+     S       W V++YAPWC HC+     + +LA ALKG V V  
Sbjct: 30  NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVAD 89

Query: 72  VNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKV 125
           ++A    +L+    + G+PT+ +F   +      G R+ + +   AL   ++ +
Sbjct: 90  LDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKAL 143

Length = 224

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 138 KAVVELTDSNFEKLVY--NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAV 194
           +AVV L+ +  E L      +   LV  +APWC  C+ +E  +E+ A +L G  VK+   
Sbjct: 1   EAVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKF 60

Query: 195 DATVHQRIAGEFN--IRGYPTIKFFSPGSR 222
           +A   QR   +    ++ +PTI FF   SR
Sbjct: 61  NADGEQREFAKEELQLKSFPTILFFPKNSR 90

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 32  KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNAD-EEKSLSSSH-GVTG 88
           + ++  +V  YAPWC  CQ+ +  Y +LA  L G  VKV   NAD E++  +     +  
Sbjct: 19  RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS 78

Query: 89  FPTVKIFS-DKRNPTPYQG-ARTADAI 113
           FPT+  F  + R P  Y    R  D++
Sbjct: 79  FPTILFFPKNSRQPIKYPSEQRDVDSL 105

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           +F + V+   E W+V++YAPWCG CQ+   E  K A ALK
Sbjct: 10  DFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALK 49

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 21/40 (52%), Positives = 29/40 (72%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           NFD++V KSD+  +V++YAPWCG C++   EY KLA   K
Sbjct: 9   NFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYK 48

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           NFD+ ++ S++  +VE+YAPWCGHC++   EY KLA  LK
Sbjct: 5   NFDE-IVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELK 43

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 10/102 (9%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL------EGKVKLGA 193
           +V LT  N + ++  S ++ LV F+A WC   + L P +E+AA+++       GKV  G 
Sbjct: 3   IVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGK 61

Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT 235
           VD      IA  + I  YPT+K F  G       +EY G R+
Sbjct: 62  VDCDKESDIADRYRINKYPTLKLFRNGMMM---KREYRGQRS 100

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 13/109 (11%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNA 74
           S+V++LT SN+   V++ +  W++E+YAPWC  CQ  + E+ + A     + + V  V+ 
Sbjct: 1   SNVVELTDSNWTL-VLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDV 57

Query: 75  DEEKSLSSSHGVTGFPTVKIFSDK----RNPTPYQGARTADAIIDVALE 119
            +E  LS    VT  PT  I+  K    R    YQG R  + +I    E
Sbjct: 58  TQEPGLSGRFFVTALPT--IYHAKDGVFRR---YQGPRDKEDLISFIEE 101

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 146 SNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG 204
            NF++++  S  +  +V+F+AP     K L P  E+ A E +G+  L  V+     +IA 
Sbjct: 1   QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQ 60

Query: 205 EFNIRGYPTIKFFSPG 220
           +F ++  PT+  F+ G
Sbjct: 61  QFGVQALPTVYLFAAG 76

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 25  NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADEEKSLSS 82
            F++ V KSD+  ++E YAPWCGHC++ +  Y +L    K    + V  +N    ++   
Sbjct: 366 TFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLE 425

Query: 83  SHGVTGFPTVKIF-SDKRNPTPYQGARTADAIID 115
               + FPT+    + +R P PY+G RT +   +
Sbjct: 426 EFSWSAFPTILFVKAGERTPIPYEGERTVEGFKE 459

Length = 477

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 55.8 bits (134), Expect = 7e-10
 Identities = 24/80 (30%), Positives = 45/80 (56%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
          +I LT  +FD  V+K+D   +V+++A WCG C+       ++A   +G + V  +N D+ 
Sbjct: 5  IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64

Query: 78 KSLSSSHGVTGFPTVKIFSD 97
             +  +G+ G PT+ +F +
Sbjct: 65 PGTAPKYGIRGIPTLLLFKN 84

Length = 109

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 24  SNFDDKVIKSDEVWIV-EYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSS 82
            NF   + +S +V +V +++AP     +       +LA   +G   +  VN D +  ++ 
Sbjct: 1   QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQ 60

Query: 83  SHGVTGFPTVKIFSDKRNPTPYQGARTADAI 113
             GV   PTV +F+  +    +QGA+  + +
Sbjct: 61  QFGVQALPTVYLFAAGQPVDGFQGAQPEEQL 91

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 17  DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE 76
           +VI  T    D K+++ D   +++++APWCG C++F   +  +A    G V+   VN + 
Sbjct: 36  EVINATGETLD-KLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA 94

Query: 77  EKSLSSSHGVTGFPTVKIF 95
           E+ LS+   +   PT+ IF
Sbjct: 95  ERELSARFRIRSIPTIMIF 113

Length = 139

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 408 VDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           V+L D      NFD  V    +  +VE+YAPWCGHC++   EY KLA    
Sbjct: 3   VELTDS-----NFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFA 48

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 52.9 bits (128), Expect = 6e-09
 Identities = 21/40 (52%), Positives = 29/40 (72%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           NFD+ V+ SD+  +VE+YAPWCGHC++    Y +LA  LK
Sbjct: 9   NFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLK 48

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 18/112 (16%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQ-----------SFKDEYMKLATALK 64
           S+++ LT+ N DD +++S E+ +V +YA WC   Q             K+E+        
Sbjct: 1   SEIVSLTSGNIDD-ILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPD-----A 54

Query: 65  GVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPT-PYQGARTADAIID 115
           G V  G V+ D+E  ++  + +  +PT+K+F +       Y+G R+ +A+ +
Sbjct: 55  GKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAE 106

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 52.6 bits (126), Expect = 9e-09
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 19 IKLTTSNFD-DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
          + + TS  + +  +  +E+ IV++YA WCG C+     Y + +     +V V  V+ DE 
Sbjct: 2  VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFV-KVDVDEL 60

Query: 78 KSLSSSHGVTGFPTVKIF 95
            ++    +T  PT K+F
Sbjct: 61 SEVAEKENITSMPTFKVF 78

Length = 98

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
           NFD  V  ++   +VE+YAPWCGHC++ K EY K A  L
Sbjct: 9   NFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKEL 47

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 53.0 bits (126), Expect = 1e-08
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 134 KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193
           + ++ A  E  D     L        LV+F+APWC  C+   P  E+ A E  G V++ A
Sbjct: 10  ELATAASFEELDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVA 69

Query: 194 VDAT-VHQRIAGEFN--IRGYPTIKFFSPGSRSASDAQEY 230
           V+    +  +A EF   +R  PT+  F  G          
Sbjct: 70  VNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGK 109

Length = 127

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
           + + FE  + + +++ +V+F+A WCG CK + P +E+ + E   K+    VD      +A
Sbjct: 7   SQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKE-YTKMVFVKVDVDELSEVA 64

Query: 204 GEFNIRGYPTIKFFSPGS 221
            + NI   PT K F  GS
Sbjct: 65  EKENITSMPTFKVFKNGS 82

Length = 98

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 49.8 bits (119), Expect = 7e-08
 Identities = 26/68 (38%), Positives = 36/68 (52%)

Query: 150 KLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIR 209
           KL + SD + LV + +P CG C+ L+P   K   E +G V    +D    Q IA    I 
Sbjct: 7   KLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIM 66

Query: 210 GYPTIKFF 217
           G PT++FF
Sbjct: 67  GTPTVQFF 74

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV---HQRIAGEFNIRGYPTIKF 216
           LV F+APWC  C+ L P   + A   +G VK  AVD       ++    + + G PT+  
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNKG-VKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59

Query: 217 FSPGSR 222
           F PG  
Sbjct: 60  FGPGIG 65

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 413 LPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           L  ++F    K +K ++  +V +YAPWCGHC+  K E+ K AT LK
Sbjct: 5   LTDEDF---RKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELK 47

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 34  DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNAD-EEKSLSSSH-GVTGFP 90
            E W+V  YAPWC  CQ+ +  Y +LA  L G  VKV    AD ++K  +     +  FP
Sbjct: 365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424

Query: 91  TVKIF 95
           T+ +F
Sbjct: 425 TILLF 429

Length = 457

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 35  EVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNAD-EEKSLSSSHGVTG-FPT 91
           E W+V  YAPWC  CQ+ +  Y++LA  L G  VKV    AD ++K  +      G FPT
Sbjct: 372 EAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPT 431

Query: 92  VKIFSDKRNPTP 103
           +  F  K +  P
Sbjct: 432 ILFFP-KHSSRP 442

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|239304 cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 16  SDVIKLTTSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
           S V+       D         EV +V YYAPW    Q+ + E+ ++A  L   V   A+N
Sbjct: 9   SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAIN 68

Query: 74  A--DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
               + K     H    FP + ++   R P  Y+G   A  +  
Sbjct: 69  CWWPQGKCRKQKH-FFYFPVIHLYYRSRGPIEYKGPMRAPYMEK 111

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. Length = 113

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 137 SKAVVELTDSNFEKLVY--NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGA 193
           S+ VV L+ +  E L+   N  + WLV  +APWC  C+ +E  +E+ A +L G  VK+  
Sbjct: 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAK 403

Query: 194 VDATVHQR--IAGEFNIRGYPTIKFFSPGS 221
             A   Q+     E  +  +PTI  F   S
Sbjct: 404 FRADGDQKEFAKQELQLGSFPTILLFPKNS 433

Length = 457

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-VHQRIAGEFNIRGYP 212
           N +D   V F+A WC    +  PH+   +S +  +++  A++ + +   +   + + G+P
Sbjct: 16  NREDYTAVLFYASWCPFSASFRPHFNALSS-MFPQIRHLAIEESSIKPSLLSRYGVVGFP 74

Query: 213 TIKFFSPGSRSASDAQEYNGGRT 235
           TI  F+   R       YNG RT
Sbjct: 75  TILLFNSTPRV-----RYNGTRT 92

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 48.0 bits (113), Expect = 8e-07
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA-D 75
          D   L+ S    K +      +V+++APWC  C++      +LA    G V+V AVN  D
Sbjct: 21 DGAPLSLSELKGKPV------LVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDD 74

Query: 76 EEKSLSSSHG--VTGFPTVKIFSD 97
          E   L++  G  V   PT+ +F D
Sbjct: 75 ENPDLAAEFGVAVRSIPTLLLFKD 98

Length = 127

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 412 DLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
            L    F   DK I  +E+ +V++YAPWCGHC+    EY K A  LK
Sbjct: 36  VLTDSTF---DKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLK 79

Length = 477

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 416 DEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVY 460
           D  +F+  ++ S   W+VE+YA WCGHC++F   + KLA  L+ +
Sbjct: 7   DAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW 51

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 22/67 (32%), Positives = 38/67 (56%)

Query: 32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPT 91
          +SD + +V Y +P CG C++ K    K+     G V    ++ DE++ ++ + G+ G PT
Sbjct: 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPT 70

Query: 92 VKIFSDK 98
          V+ F DK
Sbjct: 71 VQFFKDK 77

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 32  KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-SLSSSHGVTGFP 90
             ++   V +YA WC    SF+  +  L++     ++  A+     K SL S +GV GFP
Sbjct: 16  NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFP 74

Query: 91  TVKIFSDKRNPTP---YQGARTADAIID 115
           T+ +F    N TP   Y G RT D++  
Sbjct: 75  TILLF----NSTPRVRYNGTRTLDSLAA 98

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 421 DDKVI--KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           DD     + +++W+V++YAPWCGHC+  +  + ++   LK
Sbjct: 6   DDSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELK 45

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 405 LSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
           LS  ++E L K E        + ++  +V  YAPWC  CQ+ +  Y +LA  L
Sbjct: 6   LSRAEIEALAKGE--------RRNQSTLVVLYAPWCPFCQAMEASYEELAEKL 50

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 43.5 bits (102), Expect = 7e-06
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE---EKSLSSSHGVTGFPTVKI 94
          +V +YAPWC  CQ+ +   +     L   VK  AV+ DE    +     +GV G PT+ +
Sbjct: 1  LVLFYAPWCPFCQALR-PVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59

Query: 95 F 95
          F
Sbjct: 60 F 60

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVY 460
            F++ V KSD+  ++E YAPWCGHC++ +  Y +L    K  
Sbjct: 366 TFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN 407

Length = 477

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 137 SKAVVELTDSNFEKLVY--NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGA 193
           S  VV L+    E L+      + WLV  +APWC  C+ +E  + + A +L G  VK+  
Sbjct: 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAK 409

Query: 194 VDATVHQR--IAGEFNIRGYPTIKFF 217
             A   Q+     E  +  +PTI FF
Sbjct: 410 FRADGDQKEFAKQELQLGSFPTILFF 435

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 431 WIVEYYAPWCGHCQSFKDEYMKLATALK 458
           W V++YAPWC HC+     + +LA ALK
Sbjct: 55  WFVKFYAPWCSHCRKMAPAWERLAKALK 82

Length = 224

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
            F++ +  +  V +V+++APWCG C++      +LA 
Sbjct: 2   EFEELIKSAKPV-VVDFWAPWCGPCKAIAPVLEELAE 37

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 15/81 (18%)

Query: 384 INQVDAWDGKDGELPQEEDI-------DLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYY 436
           I + D     D       DI        LS   +E+L K E           E W+V  Y
Sbjct: 322 IKEEDNGAANDNGNAAVADIFNSQNVVALSRAGIENLLKLE--------NRKEPWLVVLY 373

Query: 437 APWCGHCQSFKDEYMKLATAL 457
           APWC  CQ+ +  Y +LA  L
Sbjct: 374 APWCPFCQAMEASYEELAEKL 394

Length = 457

>gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 160 LVEFFAPWCGHCKNLEP---HWEKAASELEGKVKLGAVDAT----VHQRIAGEFNIRGYP 212
            V+F A WC  CK  E       +  + L+  V L   D T        +   F + G P
Sbjct: 15  FVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPP 74

Query: 213 TIKFFSPGSR 222
           T  F+ PG  
Sbjct: 75  TYLFYGPGGE 84

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. Length = 104

>gnl|CDD|239270 cd02972, DsbA_family, DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191
           +VEFF P C +C   EP  EK     +G V++
Sbjct: 1   IVEFFDPLCPYCYLFEPELEKLLYADDGGVRV 32

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. Length = 98

>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 143 LTDSNFEKLVY--NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVH 199
           LT S +E  +   +    +L++  + WC  C ++EP W++   ELE   V +  V+A   
Sbjct: 9   LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE 68

Query: 200 QRIAGEFNIRGYPTI 214
           +R+A +      P I
Sbjct: 69  RRLARKLGAHSVPAI 83

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. Length = 111

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
           NFD+ +  SD+  +V+++APWCG C+       +LA
Sbjct: 5   NFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELA 40

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 415 KDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
           + EF   +  +  +E+ IV++YA WCG C+     Y + + 
Sbjct: 8   QAEF---ESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSK 45

Length = 98

>gnl|CDD|239304 cd03006, PDI_a_EFP1_N, PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 14/46 (30%), Positives = 26/46 (56%)

Query: 412 DLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
           D  K + ++ +++    EV +V YYAPW    Q+ + E+ ++A  L
Sbjct: 13  DFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKL 58

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. Length = 113

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 38  IVEYYAPWCGHCQSFKDE---YMKLATALKGVVKVGAVNADE-------------EKSLS 81
           +V +  P C +C+    E      +   LK    V  VN D+             EK L+
Sbjct: 9   LVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKELA 68

Query: 82  SSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDV 116
             +GV G PT+     D +      G    +  + +
Sbjct: 69  RKYGVRGTPTIVFLDGDGKEVARLPGYLPPEEFLKL 104

Length = 105

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 403 IDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
           + LS   +E+L K E           E W+V  YAPWC  CQ+ +  Y++LA  L
Sbjct: 354 VSLSRPGIENLLKLEER--------KEAWLVVLYAPWCPFCQAMEASYLELAEKL 400

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|219345 pfam07243, Phlebovirus_G1, Phlebovirus glycoprotein G1

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 49  CQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK 93
           CQ   D+Y       KGV K+G     E K+ +++  V  F   K
Sbjct: 147 CQKNSDDYSGPKRYSKGVCKIGLHTYKECKTGTTNFEVVPFIVFK 191

This family consists of several Phlebovirus glycoprotein G1 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi. Length = 527

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
           NFD  +  ++    V+++APWCGHC+
Sbjct: 9   NFDHHI--AEGNHFVKFFAPWCGHCK 32

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	461
KOG0190|consensus	493		100.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	100.0
PTZ00102	477	disulphide isomerase; Provisional	100.0
KOG0912|consensus	375		100.0
KOG0191|consensus	383		99.97
KOG4277|consensus	468		99.96
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.95
KOG0190|consensus	493		99.94
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.93
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.92
KOG0191|consensus	383		99.89
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.89
PTZ00102	477	disulphide isomerase; Provisional	99.88
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.87
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.86
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.86
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.86
KOG0910|consensus	150		99.85
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.85
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.85
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.83
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.82
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.82
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.82
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.81
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.8
PRK09381	109	trxA thioredoxin; Provisional	99.8
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.8
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.8
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.8
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.79
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.78
PHA02278	103	thioredoxin-like protein	99.78
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.78
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.78
PRK10996	139	thioredoxin 2; Provisional	99.77
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.77
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.77
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.77
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	99.76
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.76
KOG0912|consensus	375		99.75
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.75
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.75
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.75
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.74
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.74
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.73
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.73
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.73
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.72
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.72
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.71
KOG0910|consensus	150		99.71
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.71
KOG4277|consensus	468		99.71
PTZ00062	204	glutaredoxin; Provisional	99.7
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.7
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.7
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.69
KOG1731|consensus	606		99.69
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.69
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.69
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.69
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.68
PLN02309	457	5'-adenylylsulfate reductase	99.67
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.66
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.66
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.66
KOG0907|consensus	106		99.66
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.66
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.65
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.64
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.64
PTZ00051	98	thioredoxin; Provisional	99.64
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.63
PRK09381	109	trxA thioredoxin; Provisional	99.62
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.62
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.62
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.62
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.61
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.59
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.59
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.58
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.58
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.58
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.58
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.57
PHA02278	103	thioredoxin-like protein	99.57
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.57
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.56
PRK10996	139	thioredoxin 2; Provisional	99.56
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.56
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.56
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.54
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.54
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.53
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.52
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.52
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.51
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.51
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.51
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.5
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.49
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.49
PLN02309	457	5'-adenylylsulfate reductase	99.48
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.48
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.48
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.47
KOG0908|consensus	288		99.46
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.45
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.44
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.42
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.41
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.41
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.41
KOG0907|consensus	106		99.4
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.36
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.35
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.34
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	99.34
PTZ00051	98	thioredoxin; Provisional	99.33
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.33
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.32
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.31
KOG1731|consensus	606		99.29
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.28
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.27
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.27
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.25
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.24
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.24
PHA02125	75	thioredoxin-like protein	99.23
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.23
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.22
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.19
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.15
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.15
KOG0908|consensus	288		99.12
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	99.12
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.12
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.11
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.11
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.08
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.07
KOG0913|consensus	248		99.07
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.05
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.05
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.05
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.03
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.03
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.02
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.02
PTZ00062	204	glutaredoxin; Provisional	99.01
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.0
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.97
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.97
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.97
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.97
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.95
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.94
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.93
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.89
KOG0914|consensus	265		98.84
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.84
smart00594	122	UAS UAS domain.	98.79
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.78
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.75
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.75
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.75
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.75
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.74
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.73
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.71
PHA02125	75	thioredoxin-like protein	98.7
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.67
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.64
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.64
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.62
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.62
KOG2501|consensus	157		98.6
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.6
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.59
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.55
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.52
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.5
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.5
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.48
KOG1672|consensus	211		98.48
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.47
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.47
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.47
PTZ00056	199	glutathione peroxidase; Provisional	98.46
PLN02412	167	probable glutathione peroxidase	98.45
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	98.44
KOG0913|consensus	248		98.41
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.41
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.41
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.39
KOG0911|consensus	227		98.38
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.37
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	98.37
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.35
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.34
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.3
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.29
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.29
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.28
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.28
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.25
PF13728	215	TraF: F plasmid transfer operon protein	98.25
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.25
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.24
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.24
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.24
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.23
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.21
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.21
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.2
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	98.2
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.2
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.17
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	98.16
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.15
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.15
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.15
smart00594	122	UAS UAS domain.	98.13
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.11
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.11
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.1
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.09
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	98.07
KOG2603|consensus	331		98.07
KOG0914|consensus	265		98.03
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.99
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	97.98
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.95
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.94
PRK13728	181	conjugal transfer protein TrbB; Provisional	97.94
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	97.94
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.93
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	97.93
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.91
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.89
KOG2603|consensus	331		97.88
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.85
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.85
PTZ00256	183	glutathione peroxidase; Provisional	97.81
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	97.81
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	97.8
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	97.76
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	97.76
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	97.75
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.74
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.74
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.72
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	97.66
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	97.65
cd03071	116	PDI_b'_NRX PDIb' family, NRX subgroup, redox inact	97.65
PRK11200	85	grxA glutaredoxin 1; Provisional	97.65
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.65
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.64
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.63
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	97.62
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	97.59
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.57
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.54
PF13728	215	TraF: F plasmid transfer operon protein	97.53
KOG3425|consensus	128		97.52
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	97.46
KOG2501|consensus	157		97.46
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	97.43
PRK10606	183	btuE putative glutathione peroxidase; Provisional	97.43
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.43
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.4
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	97.38
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.38
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	97.38
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	97.37
PTZ00056	199	glutathione peroxidase; Provisional	97.37
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	97.33
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.31
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	97.31
PRK13190	202	putative peroxiredoxin; Provisional	97.28
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	97.28
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	97.26
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	97.24
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.22
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.22
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.21
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.2
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.18
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.17
PRK15000	200	peroxidase; Provisional	97.16
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.09
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.09
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.07
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.07
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.05
KOG3414|consensus	142		97.03
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.02
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.02
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.0
COG2143	182	Thioredoxin-related protein [Posttranslational mod	96.98
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	96.96
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.95
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	96.9
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	96.89
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	96.89
PTZ00137	261	2-Cys peroxiredoxin; Provisional	96.89
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	96.88
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	96.82
PLN02412	167	probable glutathione peroxidase	96.81
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.79
PRK13599	215	putative peroxiredoxin; Provisional	96.76
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.74
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	96.73
PRK13189	222	peroxiredoxin; Provisional	96.7
KOG0911|consensus	227		96.69
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	96.67
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	96.62
PHA03050	108	glutaredoxin; Provisional	96.61
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.59
PRK10329	81	glutaredoxin-like protein; Provisional	96.57
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	96.53
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	96.52
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	96.52
KOG1672|consensus	211		96.43
KOG3425|consensus	128		96.4
PRK11200	85	grxA glutaredoxin 1; Provisional	96.4
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.36
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	96.34
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.31
PTZ00253	199	tryparedoxin peroxidase; Provisional	96.25
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	96.25
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	96.25
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	96.23
PRK13191	215	putative peroxiredoxin; Provisional	96.22
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	96.04
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	95.88
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	95.81
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	95.81
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	95.78
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	95.75
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	95.64
PTZ00256	183	glutathione peroxidase; Provisional	95.59
KOG3170|consensus	240		95.58
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	95.58
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	95.52
PRK10638	83	glutaredoxin 3; Provisional	95.52
KOG3414|consensus	142		95.5
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	95.47
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	95.41
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	95.38
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	95.35
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	95.25
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	95.08
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	95.04
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	95.01
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	94.83
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	94.8
PRK10606	183	btuE putative glutathione peroxidase; Provisional	94.65
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	94.63
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	94.62
KOG3171|consensus	273		94.6
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	94.45
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	94.31
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	94.18
PRK10824	115	glutaredoxin-4; Provisional	94.02
KOG2640|consensus	319		94.0
KOG1752|consensus	104		93.95
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	93.85
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	93.8
cd02978	72	KaiB_like KaiB-like family; composed of the circad	93.62
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	93.47
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	93.38
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	93.26
PHA03050	108	glutaredoxin; Provisional	93.2
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	92.89
PRK10329	81	glutaredoxin-like protein; Provisional	92.86
PRK13190	202	putative peroxiredoxin; Provisional	92.65
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	92.46
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	92.28
KOG3170|consensus	240		92.03
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	91.91
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	91.81
COG1331	667	Highly conserved protein containing a thioredoxin	91.51
KOG2640|consensus	319		91.37
PRK15000	200	peroxidase; Provisional	91.22
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	91.21
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	90.92
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	90.67
PRK10638	83	glutaredoxin 3; Provisional	89.99
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	89.69
PRK09301	103	circadian clock protein KaiB; Provisional	88.53
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	88.45
PTZ00253	199	tryparedoxin peroxidase; Provisional	88.33
cd03070	91	PDI_b_ERp44 PDIb family, ERp44 subfamily, first re	88.25
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	88.22
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	88.15
PRK13191	215	putative peroxiredoxin; Provisional	88.06
PRK10824	115	glutaredoxin-4; Provisional	87.42
PTZ00137	261	2-Cys peroxiredoxin; Provisional	87.33
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	86.84
PRK13189	222	peroxiredoxin; Provisional	86.81
KOG3171|consensus	273		86.67
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	86.27
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	85.9
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	85.87
PF07689	82	KaiB: KaiB domain; InterPro: IPR011649 The cyanoba	84.6
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	84.48
PRK13599	215	putative peroxiredoxin; Provisional	83.37
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	83.19
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	82.68
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	82.2
KOG1752|consensus	104		81.55
cd02990	136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	80.91
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	80.74
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	80.52

>KOG0190|consensus

Probab=100.00  E-value=1e-68  Score=505.86  Aligned_cols=386  Identities=28%  Similarity=0.460  Sum_probs=319.8

Q ss_pred             CCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCCcc
Q psy17502         14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTGFP   90 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~~P   90 (461)
                      ..++|++||.+||++ ++..++++||.||||||+||+++.|+|+++|+.++.   .+.+++|||+++.++|.+|+|+|||
T Consensus        23 ~~~~Vl~Lt~dnf~~-~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP  101 (493)
T KOG0190|consen   23 AEEDVLVLTKDNFKE-TINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP  101 (493)
T ss_pred             cccceEEEecccHHH-HhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence            468899999999999 999999999999999999999999999999999976   5999999999999999999999999


Q ss_pred             EEEEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcC-hhhhhhhhhcCCCeEEEEEeCCCCh
Q psy17502         91 TVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELT-DSNFEKLVYNSDDIWLVEFFAPWCG  169 (461)
Q Consensus        91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~  169 (461)
                      ||.+|++|.....|.|.+++++|+.||+++..+               ++..+. .++...+ +..++.++|+|+.+-  
T Consensus       102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gP---------------a~~~l~~~~~a~~~-l~~~~~~vig~F~d~--  163 (493)
T KOG0190|consen  102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQSGP---------------ASKTLKTVDEAEEF-LSKKDVVVIGFFKDL--  163 (493)
T ss_pred             eEEEEecCCcceeccCcccHHHHHHHHHhccCC---------------CceecccHHHHHhh-ccCCceEEEEEeccc--
Confidence            999999997789999999999999999998743               455665 4555554 566888999999874  


Q ss_pred             hhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCccc--ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        170 HCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRG--YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       170 ~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~--~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                        ......|..+|..+++.+.|++   +.+.+++++++...  .|.++++++.+   +....|+|.++.+.|.+||..+.
T Consensus       164 --~~~~~~~~~~a~~l~~d~~F~~---ts~~~~~~~~~~~~~~~~~i~l~kk~d---~~~~~~~~~~~~~~l~~Fi~~~~  235 (493)
T KOG0190|consen  164 --ESLAESFFDAASKLRDDYKFAH---TSDSDVAKKLELNTEGTFPIVLFKKFD---ELLVKYDGSFTPELLKKFIQENS  235 (493)
T ss_pred             --ccchHHHHHHHHhccccceeec---cCcHhHHhhccCCCCCcceEEeccccc---cchhhcccccCHHHHHHHHHHhc
Confidence              2223678888888889999995   46778888888763  34588888774   35666789999999999999877


Q ss_pred             cCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhh
Q psy17502        248 TENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVL  327 (461)
Q Consensus       248 ~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~l  327 (461)
                           .|++..++.......+...-...++++..    ......+.++..++++|++|++++ .|+.+|...+++.++.|
T Consensus       236 -----~plv~~ft~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~~~~vAk~f~~~l-~Fi~~d~e~~~~~~~~~  305 (493)
T KOG0190|consen  236 -----LPLVTEFTVANNAKIYSSFVKLGLDFFVF----FKCNRFEELRKKFEEVAKKFKGKL-RFILIDPESFARVLEFF  305 (493)
T ss_pred             -----ccccceecccccceeeccccccceeEEec----cccccHHHHHHHHHHHHHhcccce-EEEEEChHHhhHHHHhc
Confidence                 89999998876665554433333444322    234468899999999999999986 77777877788899999


Q ss_pred             CCCCCCCc-cEEEEccCccccccCCCCCCHHHHHHHHHHHhcCCCCCCCcCCCCCCCcccccCCCCCCCCCCcccccccC
Q psy17502        328 EIGGFGYP-AMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLS  406 (461)
Q Consensus       328 gl~~~~~P-~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~  406 (461)
                      |+.....| .+++.+....||.+..++++.++|+.|+.+++.|++ +|++||||||     ++||+.    |+      +
T Consensus       306 Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~-~p~~kSqpiP-----e~~~~~----pV------k  369 (493)
T KOG0190|consen  306 GLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKV-KPHLKSQPIP-----EDNDRS----PV------K  369 (493)
T ss_pred             CcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCcc-ccccccCCCC-----cccccC----Ce------E
Confidence            99976777 444555555899888888999999999999999999 5999999999     455544    32      3


Q ss_pred             ccccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502        407 DVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       407 ~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      .+ ++      +||+++|+|++|||||+||||||||||+|+|+|+|||++|++
T Consensus       370 vv-Vg------knfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~  415 (493)
T KOG0190|consen  370 VV-VG------KNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD  415 (493)
T ss_pred             EE-ee------cCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcC
Confidence            33 33      799999999999999999999999999999999999999986

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=100.00  E-value=2.8e-49  Score=396.08  Aligned_cols=386  Identities=27%  Similarity=0.449  Sum_probs=309.2

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      ++|++||+++|++ +++++++++|.|||+||++|+++.|.|.++++.+.+   ++.|+.|||++++++|++++|.++||+
T Consensus         1 ~~v~~l~~~~~~~-~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~   79 (462)
T TIGR01130         1 EDVLVLTKDNFDD-FIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTL   79 (462)
T ss_pred             CCceECCHHHHHH-HHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEE
Confidence            4689999999999 788889999999999999999999999999998864   499999999999999999999999999


Q ss_pred             EEEcCCCC-CccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcC-hhhhhhhhhcCCCeEEEEEeCCCChh
Q psy17502         93 KIFSDKRN-PTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELT-DSNFEKLVYNSDDIWLVEFFAPWCGH  170 (461)
Q Consensus        93 ~~~~~g~~-~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~~  170 (461)
                      ++|++|+. ...|.|.++.+.+.+|+.+.+.               +++..++ .++++.++ ..+.+.+|+|+...   
T Consensus        80 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~---------------~~~~~i~~~~~~~~~~-~~~~~~vi~~~~~~---  140 (462)
T TIGR01130        80 KIFRNGEDSVSDYNGPRDADGIVKYMKKQSG---------------PAVKEIETVADLEAFL-ADDDVVVIGFFKDL---  140 (462)
T ss_pred             EEEeCCccceeEecCCCCHHHHHHHHHHhcC---------------CCceeecCHHHHHHHH-hcCCcEEEEEECCC---
Confidence            99998876 6899999999999999998873               3355664 67777765 55778888888652   


Q ss_pred             hhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCC--CHHHHHHHHHhhcc
Q psy17502        171 CKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR--TSQDIVTWALNKYT  248 (461)
Q Consensus       171 c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~--~~~~i~~fi~~~~~  248 (461)
                      .......|.++|..+++.+.+...  ..+..++..++... |.+.+|+..... .....|.|+.  +.++|..||..+. 
T Consensus       141 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~fi~~~~-  215 (462)
T TIGR01130       141 DSELNDTFLSVAEKLRDVYFFFAH--SSDVAAFAKLGAFP-DSVVLFKPKDED-EKFSKVDGEMDTDVSDLEKFIRAES-  215 (462)
T ss_pred             CcHHHHHHHHHHHHhhhccceEEe--cCCHHHHhhcCCCC-CcEEEecccccc-cccccccCcccCCHHHHHHHHHHcC-
Confidence            357788999999999876663322  23456677788763 777777754221 1223567764  5689999999877 


Q ss_pred             CCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccC-cceEEEecccccchhHHHhh
Q psy17502        249 ENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQ-KVWGWIWSEAVAQPDLENVL  327 (461)
Q Consensus       249 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~-~~f~~v~~d~~~~~~~~~~l  327 (461)
                          .|.+.+++..+....+..+ +.+++++...   ......+.+.+.++++|++|++ .+ .|+++|......++..+
T Consensus       216 ----~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~i-~f~~~d~~~~~~~~~~~  286 (462)
T TIGR01130       216 ----LPLVGEFTQETAAKYFESG-PLVVLYYNVD---ESLDPFEELRNRFLEAAKKFRGKFV-NFAVADEEDFGRELEYF  286 (462)
T ss_pred             ----CCceEeeCCcchhhHhCCC-CceeEEEEec---CCchHHHHHHHHHHHHHHHCCCCeE-EEEEecHHHhHHHHHHc
Confidence                8999999877665554443 5555554321   1222357888999999999997 54 78888877788899999


Q ss_pred             CCCCCCCccEEEEccCc-cccccCCCCCCHHHHHHHHHHHhcCCCCCCCcCCCCCCCcccccCCCCCCCCCCcccccccC
Q psy17502        328 EIGGFGYPAMAVLNAKK-MKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLS  406 (461)
Q Consensus       328 gl~~~~~P~l~i~~~~~-~k~~~~~~~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~  406 (461)
                      |+.+..+|+++|++..+ .+|.+..+.++.++|.+|++++++|+++ +.++|+++|+.                +++.+.
T Consensus       287 ~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~-~~~~se~~p~~----------------~~~~v~  349 (462)
T TIGR01130       287 GLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLK-PYLKSEPIPED----------------DEGPVK  349 (462)
T ss_pred             CCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCC-eeeccCCCCcc----------------CCCccE
Confidence            99977799999999876 6777655589999999999999999995 99999999842                223344


Q ss_pred             ccccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502        407 DVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       407 ~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      .++.       +||+++|.+++++|||.||||||++|+.+.|.|++||+.+++
T Consensus       350 ~l~~-------~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~  395 (462)
T TIGR01130       350 VLVG-------KNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKD  395 (462)
T ss_pred             EeeC-------cCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhc
Confidence            4543       699999999999999999999999999999999999999975

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=100.00  E-value=3.9e-49  Score=395.73  Aligned_cols=368  Identities=27%  Similarity=0.444  Sum_probs=291.9

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC---CceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK---GVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~---~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      +.+..|+.++|++ ++++++.++|.|||+||++|+++.|+|.++++.+.   .++.++.|||++++++|++|+|.++||+
T Consensus        32 ~~v~~l~~~~f~~-~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~  110 (477)
T PTZ00102         32 EHVTVLTDSTFDK-FITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI  110 (477)
T ss_pred             CCcEEcchhhHHH-HHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence            6799999999999 78888999999999999999999999999998875   3599999999999999999999999999


Q ss_pred             EEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhh
Q psy17502         93 KIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCK  172 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~  172 (461)
                      ++|++|+.. .|.|.++.+.|.+|+.+.+.               +++..++.........+...+++++++...   ..
T Consensus       111 ~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~  171 (477)
T PTZ00102        111 KFFNKGNPV-NYSGGRTADGIVSWIKKLTG---------------PAVTEVESASEIKLIAKKIFVAFYGEYTSK---DS  171 (477)
T ss_pred             EEEECCceE-EecCCCCHHHHHHHHHHhhC---------------CCceeecCHHHHHHhhccCcEEEEEEeccC---Cc
Confidence            999988655 99999999999999999873               345566554333333455566777777654   45


Q ss_pred             hhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCC
Q psy17502        173 NLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVP  252 (461)
Q Consensus       173 ~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~  252 (461)
                      .....|.++|..+++...|+.+...            ..|.+.+++..    +....+.+..+.++|.+||..+.     
T Consensus       172 ~~~~~f~~~a~~~~~~~~F~~~~~~------------~~~~~~~~~~~----~~~~~~~~~~~~~~l~~fI~~~~-----  230 (477)
T PTZ00102        172 ELYKKFEEVADKHREHAKFFVKKHE------------GKNKIYVLHKD----EEGVELFMGKTKEELEEFVSTES-----  230 (477)
T ss_pred             HHHHHHHHHHHhccccceEEEEcCC------------CCCcEEEEecC----CCCcccCCCCCHHHHHHHHHHcC-----
Confidence            7788999999999888888765211            23667888765    23333334458899999999876     


Q ss_pred             CCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchh-HHHhhCCCC
Q psy17502        253 PPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPD-LENVLEIGG  331 (461)
Q Consensus       253 ~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~-~~~~lgl~~  331 (461)
                      .|.+.+++..+....+..+..+  ++++.     ..++.+.+.+.++++|++|+++. .|+++|...+.. +++.||+. 
T Consensus       231 ~P~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~A~~~~~~~-~f~~vd~~~~~~~~~~~~gi~-  301 (477)
T PTZ00102        231 FPLFAEINAENYRRYISSGKDL--VWFCG-----TTEDYDKYKSVVRKVARKLREKY-AFVWLDTEQFGSHAKEHLLIE-  301 (477)
T ss_pred             CCceeecCccchHHHhcCCccE--EEEec-----CHHHHHHHHHHHHHHHHhccCce-EEEEEechhcchhHHHhcCcc-
Confidence            8999999888776655444432  32221     24456678899999999999996 788888777665 78899998 


Q ss_pred             CCCccEEEEccCccccccCCC---CCCHHHHHHHHHHHhcCCCCCCCcCCCCCCCcccccCCCCCCCCCCcccccccCcc
Q psy17502        332 FGYPAMAVLNAKKMKYSLLKG---PFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDV  408 (461)
Q Consensus       332 ~~~P~l~i~~~~~~k~~~~~~---~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v  408 (461)
                       .+|++++.+..+ +|.+..+   ..+.++|.+|++++.+|++ +++++|+|+|..                ++.++..+
T Consensus       302 -~~P~~~i~~~~~-~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~-~~~~~se~~p~~----------------~~~~v~~l  362 (477)
T PTZ00102        302 -EFPGLAYQSPAG-RYLLPPAKESFDSVEALIEFFKDVEAGKV-EKSIKSEPIPEE----------------QDGPVKVV  362 (477)
T ss_pred             -cCceEEEEcCCc-ccCCCccccccCCHHHHHHHHHHHhCCCC-CcccccCCCCCC----------------CCCCeEEe
Confidence             589999887543 6654332   3689999999999999999 599999999842                22334445


Q ss_pred             ccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502        409 DLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       409 ~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +.       +||+++|.+++++|||.||||||+||++++|+|+++|+.+++
T Consensus       363 ~~-------~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~  406 (477)
T PTZ00102        363 VG-------NTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD  406 (477)
T ss_pred             cc-------cchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc
Confidence            43       699999999999999999999999999999999999999864

>KOG0912|consensus

Probab=100.00  E-value=9.3e-31  Score=226.69  Aligned_cols=322  Identities=19%  Similarity=0.301  Sum_probs=233.8

Q ss_pred             cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC-----CceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK-----GVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~-----~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      |+.+|++. ++..+..++|.|||.||..++.++|.|+++|..++     +++.+|.|||+.+..++.+|.|..|||+.+|
T Consensus         1 lt~~N~~~-il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf   79 (375)
T KOG0912|consen    1 LTSENIDS-ILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF   79 (375)
T ss_pred             CccccHHH-hhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee
Confidence            46789998 89999999999999999999999999999998763     4799999999999999999999999999999


Q ss_pred             cCCCCCc-cccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEc-ChhhhhhhhhcCCCeEEEEEeCCCChhhhh
Q psy17502         96 SDKRNPT-PYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVEL-TDSNFEKLVYNSDDIWLVEFFAPWCGHCKN  173 (461)
Q Consensus        96 ~~g~~~~-~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~  173 (461)
                      ++|.... +|+|.|+++++.+||.++....+.               +. +-.++.... ...+-.+|+++...   ...
T Consensus        80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~---------------Ef~sl~~l~n~~-~p~K~~vIgyF~~k---dsp  140 (375)
T KOG0912|consen   80 RNGEMMKREYRGQRSVEALIEFIEKQLSDPIN---------------EFESLDQLQNLD-IPSKRTVIGYFPSK---DSP  140 (375)
T ss_pred             eccchhhhhhccchhHHHHHHHHHHHhccHHH---------------HHHhHHHHHhhh-ccccceEEEEeccC---CCc
Confidence            9997665 899999999999999999854432               33 223344332 32444566666533   345


Q ss_pred             hhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCC-CHHHHHHHHHhhccCCCC
Q psy17502        174 LEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR-TSQDIVTWALNKYTENVP  252 (461)
Q Consensus       174 ~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~-~~~~i~~fi~~~~~~~~~  252 (461)
                      ....+.++|..+++...|..--    .++.....-.+.+ +++|+++..  .....|.|.+ +.+.++.||.+..     
T Consensus       141 ey~~~~kva~~lr~dc~f~V~~----gD~~~~~~~~~~~-~~~f~pd~~--~~~~~f~G~~~nf~el~~Wi~dKc-----  208 (375)
T KOG0912|consen  141 EYDNLRKVASLLRDDCVFLVGF----GDLLKPHEPPGKN-ILVFDPDHS--EPNHEFLGSMTNFDELKQWIQDKC-----  208 (375)
T ss_pred             hHHHHHHHHHHHhhccEEEeec----cccccCCCCCCCc-eEEeCCCcC--CcCcccccccccHHHHHHHHHhcc-----
Confidence            6788999999999876664310    1111222222222 566665522  2233699985 7899999999977     


Q ss_pred             CCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcc--eEEEecccccchhHHHhhCCC
Q psy17502        253 PPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV--WGWIWSEAVAQPDLENVLEIG  330 (461)
Q Consensus       253 ~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~--f~~v~~d~~~~~~~~~~lgl~  330 (461)
                      .|.|+++|-++.-+--.++.|.++++..++       +.+.....-..++++..+..  ++++..|+......+..||-+
T Consensus       209 vpLVREiTFeN~EELtEEGlPflILf~~kd-------D~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs  281 (375)
T KOG0912|consen  209 VPLVREITFENAEELTEEGLPFLILFRKKD-------DKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKS  281 (375)
T ss_pred             hhhhhhhhhccHHHHhhcCCceEEEEecCC-------cccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCCC
Confidence            899999987765544446778877765443       22223233344555554332  688899988888889999999


Q ss_pred             CCCCccEEEEccCcc-ccccCCCCCCHHHHHHHHHHHhcCCCCCCCcCCCCCC
Q psy17502        331 GFGYPAMAVLNAKKM-KYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALP  382 (461)
Q Consensus       331 ~~~~P~l~i~~~~~~-k~~~~~~~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP  382 (461)
                      ..++|.|+|-+...+ -++.+++-+.+..|.+|+.++.+|+++ ...--.+-|
T Consensus       282 ~~DLPviaIDsF~Hmylfp~f~di~~pGkLkqFv~DL~sgklH-refH~~~d~  333 (375)
T KOG0912|consen  282 PDDLPVIAIDSFRHMYLFPDFNDINIPGKLKQFVADLHSGKLH-REFHEGPDP  333 (375)
T ss_pred             cccCcEEEeeccceeeecCchhhhcCccHHHHHHHHHhCchhh-HHhhcCCCC
Confidence            889999999877652 333344556788999999999999997 444333333

>KOG0191|consensus

Probab=99.97  E-value=9.1e-30  Score=246.09  Aligned_cols=237  Identities=47%  Similarity=0.901  Sum_probs=204.8

Q ss_pred             cCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCcc
Q psy17502         11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFP   90 (461)
Q Consensus        11 ~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   90 (461)
                      +.........++..+|...+.....+++|.||+|||+||+.+.|+|.+++..+++++.++.|||+.++++|++|+|+++|
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfP  103 (383)
T KOG0191|consen   24 LYLASGVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFP  103 (383)
T ss_pred             hhccccchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCc
Confidence            33444556666777777767888899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCC-ceeEcChhhhhhhhhcCCCeEEEEEeCCCCh
Q psy17502         91 TVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSK-AVVELTDSNFEKLVYNSDDIWLVEFFAPWCG  169 (461)
Q Consensus        91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~  169 (461)
                      |+.+|..|..+..|.|.++.+.+.+|+...+.+.....        .. .+..++..++...+.+.+..++|.||+|||+
T Consensus       104 tl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~  175 (383)
T KOG0191|consen  104 TLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKL--------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCG  175 (383)
T ss_pred             EEEEEcCCCceeeccCcccHHHHHHHHHHhhccccccc--------cCCceEEccccchhhhhhccCcceEEEEeccccH
Confidence            99999988678899999999999999999886655421        23 4888999999998888899999999999999


Q ss_pred             hhhhhhHHHHHHHHHhc--CceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcC-cccccCCCCHHHHHHHHHhh
Q psy17502        170 HCKNLEPHWEKAASELE--GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASD-AQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       170 ~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~-~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|+.+.+.|.+++..+.  ..+.++.+||+....++.++++.++|++++|+++.    . ...|.|.++.+.|.+|+...
T Consensus       176 ~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~----~~~~~~~~~R~~~~i~~~v~~~  251 (383)
T KOG0191|consen  176 HCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGE----EDIYYYSGLRDSDSIVSFVEKK  251 (383)
T ss_pred             HhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCC----cccccccccccHHHHHHHHHhh
Confidence            99999999999999886  57999999999899999999999999999999983    4 56678899999999999987


Q ss_pred             ccCCCCCCcceee
Q psy17502        247 YTENVPPPEIKQI  259 (461)
Q Consensus       247 ~~~~~~~p~v~~~  259 (461)
                      .......+.+.++
T Consensus       252 ~~~~~~~~~~~~~  264 (383)
T KOG0191|consen  252 ERRNIPEPELKEI  264 (383)
T ss_pred             cCCCCCCcccccc
Confidence            6443223334333

>KOG4277|consensus

Probab=99.96  E-value=3.9e-28  Score=209.95  Aligned_cols=311  Identities=23%  Similarity=0.391  Sum_probs=216.9

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      |.+|++ .|.+  .+..+.|+|.||||||+||+++.|.|.++..++++   .|.+++.||+.-+.++.++||+||||+.+
T Consensus        30 VeDLdd-kFkd--nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~  106 (468)
T KOG4277|consen   30 VEDLDD-KFKD--NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKF  106 (468)
T ss_pred             hhhhhH-Hhhh--cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEE
Confidence            555543 3444  45667999999999999999999999999988875   49999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcCh--hhhhhhhhcCCCeEEEEEeCCCChhhh
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTD--SNFEKLVYNSDDIWLVEFFAPWCGHCK  172 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~~~~~~~~~v~f~~~~c~~c~  172 (461)
                      |+++ ....|+|.++.++|++|..+...+.               +..+++  ..++.+ ...+.+.+|+|-+.    ..
T Consensus       107 ~kgd-~a~dYRG~R~Kd~iieFAhR~a~ai---------------I~pi~enQ~~fehl-q~Rhq~ffVf~Gtg----e~  165 (468)
T KOG4277|consen  107 FKGD-HAIDYRGGREKDAIIEFAHRCAAAI---------------IEPINENQIEFEHL-QARHQPFFVFFGTG----EG  165 (468)
T ss_pred             ecCC-eeeecCCCccHHHHHHHHHhcccce---------------eeecChhHHHHHHH-hhccCceEEEEeCC----CC
Confidence            9975 7789999999999999999876332               334544  334433 45678888888754    34


Q ss_pred             hhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcC-cccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCC
Q psy17502        173 NLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFN-IRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENV  251 (461)
Q Consensus       173 ~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~-i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~  251 (461)
                      .+...|..+|...-.-..|..    ..++++..++ .+..|.+.+|++.     ....| ...+.+++.+||.+..    
T Consensus       166 PL~d~fidAASe~~~~a~FfS----aseeVaPe~~~~kempaV~VFKDe-----tf~i~-de~dd~dLseWinRER----  231 (468)
T KOG4277|consen  166 PLFDAFIDAASEKFSVARFFS----ASEEVAPEENDAKEMPAVAVFKDE-----TFEIE-DEGDDEDLSEWINRER----  231 (468)
T ss_pred             cHHHHHHHHhhhheeeeeeec----cccccCCcccchhhccceEEEccc-----eeEEE-ecCchhHHHHHHhHhh----
Confidence            667777777765433333332    2344444443 4557999999976     23332 2234688999998765    


Q ss_pred             CCCcceeecCHHHHHHHhcCCCeEEEEEeCCcc-ccChhhHHHHHHHHHHHHHhccCcc-----eEEEecccccchhHHH
Q psy17502        252 PPPEIKQIVSEATFKEACEDHPLCIVAVLPHIL-DCQSSCRNNYLEILQKLGDKYKQKV-----WGWIWSEAVAQPDLEN  325 (461)
Q Consensus       252 ~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~va~~~~~~~-----f~~v~~d~~~~~~~~~  325 (461)
                       .|.+...+..... ++....+++++.+...-. ..++.+...+....+++|+.+|+..     |.|.+.|+.   .+++
T Consensus       232 -f~~fLa~dgflL~-EiG~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGn---D~~n  306 (468)
T KOG4277|consen  232 -FPGFLAADGFLLA-EIGASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGN---DLAN  306 (468)
T ss_pred             -ccchhhcccchHH-HhCcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchh---HHHH
Confidence             5555544433333 333344455555443211 1245667788899999999999763     778888853   3444


Q ss_pred             hhCCCCCCCccEEEEccCccccccCCC---CCCHHHHHHHHHHHhcCCC
Q psy17502        326 VLEIGGFGYPAMAVLNAKKMKYSLLKG---PFSYDGINEFLRDLSYGRG  371 (461)
Q Consensus       326 ~lgl~~~~~P~l~i~~~~~~k~~~~~~---~~~~~~i~~Fi~~~~~Gkl  371 (461)
                      .+-+..-..|.++|++..+..|.+.+.   ..+.++|.+||++-..|-+
T Consensus       307 qilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqFientsegI~  355 (468)
T KOG4277|consen  307 QILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFIENTSEGID  355 (468)
T ss_pred             HHHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHHHhccccccc
Confidence            444444457999999988866766433   4578999999999555543

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.95  E-value=6.6e-25  Score=194.79  Aligned_cols=321  Identities=19%  Similarity=0.322  Sum_probs=220.3

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHH---h--hHH-HHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCC
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQ---S--FKD-EYMKLATALKG-VVKVGAVNADEEKSLSSSHGVT   87 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~---~--~~~-~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~   87 (461)
                      .+.|++||.+||.+ ++++.+...|+||.|--++-.   +  +.. .++-+|+-+.. .|.||.||..++..+++++|+.
T Consensus        33 kDRVi~LneKNfk~-~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~  111 (383)
T PF01216_consen   33 KDRVIDLNEKNFKR-ALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE  111 (383)
T ss_dssp             S--CEEE-TTTHHH-HHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred             ccceEEcchhHHHH-HHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence            46799999999999 899999999999988643221   1  222 34556666654 4999999999999999999999


Q ss_pred             CccEEEEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhc-CCCeEEEEEeCC
Q psy17502         88 GFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYN-SDDIWLVEFFAP  166 (461)
Q Consensus        88 ~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~  166 (461)
                      ..+++++|++| ...+|.|.++++.+++|+...+.               .+|..++.+.-.+.+.+ ...+.+|+||.+
T Consensus       112 E~~SiyVfkd~-~~IEydG~~saDtLVeFl~dl~e---------------dPVeiIn~~~e~~~Fe~ied~~klIGyFk~  175 (383)
T PF01216_consen  112 EEGSIYVFKDG-EVIEYDGERSADTLVEFLLDLLE---------------DPVEIINNKHELKAFERIEDDIKLIGYFKS  175 (383)
T ss_dssp             STTEEEEEETT-EEEEE-S--SHHHHHHHHHHHHS---------------SSEEEE-SHHHHHHHHH--SS-EEEEE-SS
T ss_pred             ccCcEEEEECC-cEEEecCccCHHHHHHHHHHhcc---------------cchhhhcChhhhhhhhhcccceeEEEEeCC
Confidence            99999999987 67899999999999999999983               45766655433222222 447899999987


Q ss_pred             CChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccC-CCCHHHHHHHHHh
Q psy17502        167 WCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG-GRTSQDIVTWALN  245 (461)
Q Consensus       167 ~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g-~~~~~~i~~fi~~  245 (461)
                      .   .......|..+|..+.+.|.|..+   .++.+|++++++ .-.+-+|++..   +.+....| +.+.++|.+||.+
T Consensus       176 ~---~s~~yk~FeeAAe~F~p~IkFfAt---fd~~vAk~L~lK-~nev~fyepF~---~~pi~ip~~p~~e~e~~~fi~~  245 (383)
T PF01216_consen  176 E---DSEHYKEFEEAAEHFQPYIKFFAT---FDKKVAKKLGLK-LNEVDFYEPFM---DEPITIPGKPYTEEELVEFIEE  245 (383)
T ss_dssp             T---TSHHHHHHHHHHHHCTTTSEEEEE----SHHHHHHHT-S-TT-EEEE-TTS---SSEEEESSSS--HHHHHHHHHH
T ss_pred             C---CcHHHHHHHHHHHhhcCceeEEEE---ecchhhhhcCcc-ccceeeecccc---CCCccCCCCCCCHHHHHHHHHH
Confidence            4   345788999999999999999875   678999999997 78899999885   35666665 4788999999999


Q ss_pred             hccCCCCCCcceeecCHHHHHHHhc-CCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcc-eEEEecccccchhH
Q psy17502        246 KYTENVPPPEIKQIVSEATFKEACE-DHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV-WGWIWSEAVAQPDL  323 (461)
Q Consensus       246 ~~~~~~~~p~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~-f~~v~~d~~~~~~~  323 (461)
                      |.     .|.++.++..+.+..... -....+++|.    +....+-..+++.++++|+...+.. ..++|+|.+.++-+
T Consensus       246 h~-----rptlrkl~~~~m~e~Wedd~~g~hIvaFa----ee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPll  316 (383)
T PF01216_consen  246 HK-----RPTLRKLRPEDMFETWEDDIDGIHIVAFA----EEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLL  316 (383)
T ss_dssp             T------S-SEEE--GGGHHHHHHSSSSSEEEEEE------TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHH
T ss_pred             hc-----hhHhhhCChhhhhhhhcccCCCceEEEEe----cCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchh
Confidence            87     899999998888776543 2455566653    2334456778899999999988764 78999998887765


Q ss_pred             H----HhhCCCCCCCccEEEEccCc--ccc-ccCC--CCCCHHHHHHHHHHHhcCCCC
Q psy17502        324 E----NVLEIGGFGYPAMAVLNAKK--MKY-SLLK--GPFSYDGINEFLRDLSYGRGH  372 (461)
Q Consensus       324 ~----~~lgl~~~~~P~l~i~~~~~--~k~-~~~~--~~~~~~~i~~Fi~~~~~Gkl~  372 (461)
                      .    +.|||.-. -|.|.+++...  ..| .+..  +..|.+.++.||+++++|++.
T Consensus       317 v~yWE~tF~Idl~-~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~  373 (383)
T PF01216_consen  317 VPYWEKTFGIDLS-RPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKIN  373 (383)
T ss_dssp             HHHHHHHHTT-TT-S-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCT
T ss_pred             HHHHHhhcCcccc-CCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCCC
Confidence            4    45888754 59999999876  233 3332  245899999999999999985

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>KOG0190|consensus

Probab=99.94  E-value=2.8e-25  Score=211.23  Aligned_cols=261  Identities=26%  Similarity=0.465  Sum_probs=205.1

Q ss_pred             CCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcccHhhhhhcCccccc
Q psy17502        136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVHQRIAGEFNIRGYP  212 (461)
Q Consensus       136 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~~~l~~~~~i~~~P  212 (461)
                      ....|..|+.++|.+.+ ..+..++|.||||||+||+.+.|.|.++|..++.   .+..+.|||+.+.++|.+|+|++||
T Consensus        23 ~~~~Vl~Lt~dnf~~~i-~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP  101 (493)
T KOG0190|consen   23 AEEDVLVLTKDNFKETI-NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP  101 (493)
T ss_pred             cccceEEEecccHHHHh-ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence            35679999999999985 7889999999999999999999999999999974   6999999999999999999999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHH
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRN  292 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  292 (461)
                      |+.+|++|    .....|+|.++++.|+.|++++.     .|....+.+......+....+..++.++.....     ..
T Consensus       102 TlkiFrnG----~~~~~Y~G~r~adgIv~wl~kq~-----gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~-----~~  167 (493)
T KOG0190|consen  102 TLKIFRNG----RSAQDYNGPREADGIVKWLKKQS-----GPASKTLKTVDEAEEFLSKKDVVVIGFFKDLES-----LA  167 (493)
T ss_pred             eEEEEecC----CcceeccCcccHHHHHHHHHhcc-----CCCceecccHHHHHhhccCCceEEEEEeccccc-----ch
Confidence            99999999    33689999999999999999987     788888999999999998889999998765211     11


Q ss_pred             HHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy17502        293 NYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGH  372 (461)
Q Consensus       293 ~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~Gkl~  372 (461)
                         +.+...|...++.. .|...   ...++++.+++...+.|.+++++....++..+.+.++.+.|.+||+....+-. 
T Consensus       168 ---~~~~~~a~~l~~d~-~F~~t---s~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv-  239 (493)
T KOG0190|consen  168 ---ESFFDAASKLRDDY-KFAHT---SDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLV-  239 (493)
T ss_pred             ---HHHHHHHHhccccc-eeecc---CcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhccccc-
Confidence               34556666666664 44422   34667888888744466688887766555556889999999999988753322 


Q ss_pred             CCCcCCCCCCCcccccCCCCCCCCCCcccccccCccccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHHHH
Q psy17502        373 TAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMK  452 (461)
Q Consensus       373 ~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~~~  452 (461)
                               ..                        .+.       .++..+..+.=++=+.+|--.-|..-..+.+.|++
T Consensus       240 ---------~~------------------------ft~-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  279 (493)
T KOG0190|consen  240 ---------TE------------------------FTV-------ANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEE  279 (493)
T ss_pred             ---------ce------------------------ecc-------cccceeeccccccceeEEeccccccHHHHHHHHHH
Confidence                     11                        101       13333333334555666777888889999999999


Q ss_pred             HHHHHhh
Q psy17502        453 LATALKV  459 (461)
Q Consensus       453 la~~~k~  459 (461)
                      +|+.||.
T Consensus       280 vAk~f~~  286 (493)
T KOG0190|consen  280 VAKKFKG  286 (493)
T ss_pred             HHHhccc
Confidence            9999984

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.93  E-value=7.1e-25  Score=194.60  Aligned_cols=201  Identities=17%  Similarity=0.251  Sum_probs=158.6

Q ss_pred             CccchhHHHhcCCCeEEEEEEC---CCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCCccEEEEEcC
Q psy17502         22 TTSNFDDKVIKSDEVWIVEYYA---PWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD   97 (461)
Q Consensus        22 ~~~~f~~~~~~~~~~~lv~f~~---~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~   97 (461)
                      ..+.|.+ -+ ++...++.|++   +||++|+.+.|.++++++.+.+ ++.++.+|.+++++++++|+|.++||+++|++
T Consensus         9 ~~~~~~~-~~-~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~   86 (215)
T TIGR02187         9 LKELFLK-EL-KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEE   86 (215)
T ss_pred             HHHHHHH-hc-CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeC
Confidence            3455444 23 45566878988   9999999999999999998854 35677777779999999999999999999999


Q ss_pred             CCCC-ccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhH
Q psy17502         98 KRNP-TPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEP  176 (461)
Q Consensus        98 g~~~-~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~  176 (461)
                      |+.. .+|.|..+.+++.+|+...+. ...            ....++.+..+.+-...+.+.++.|+++||++|+.+.+
T Consensus        87 g~~~~~~~~G~~~~~~l~~~i~~~~~-~~~------------~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~  153 (215)
T TIGR02187        87 GKDGGIRYTGIPAGYEFAALIEDIVR-VSQ------------GEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVL  153 (215)
T ss_pred             CeeeEEEEeecCCHHHHHHHHHHHHH-hcC------------CCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHH
Confidence            8776 489999999999999987742 111            11245544444332223445556699999999999999


Q ss_pred             HHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        177 HWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       177 ~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      .+.+++... +.+.+..+|.+.+++++++|+|.++|++++++.+     .  .+.|....+.+.+|+.+
T Consensus       154 ~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~-----~--~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       154 MAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGV-----E--EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             HHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCC-----E--EEECCCCHHHHHHHHHh
Confidence            999998874 6799999999999999999999999999998765     2  28898899999999864

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.92  E-value=1.1e-24  Score=170.55  Aligned_cols=107  Identities=23%  Similarity=0.393  Sum_probs=99.3

Q ss_pred             cCCCCCCceEcCccchhHH--HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhH-hhcCCC
Q psy17502         11 LYPSYSDVIKLTTSNFDDK--VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS-SSHGVT   87 (461)
Q Consensus        11 ~~~~~~~v~~l~~~~f~~~--~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~-~~~~i~   87 (461)
                      +|+..++|++|+++||++.  +++++++++|.||||||++|+.+.|.|+++|+++++.+.|++|||+++.++| ++|+|+
T Consensus         4 ~~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~   83 (113)
T cd03006           4 FFSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF   83 (113)
T ss_pred             ccCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc
Confidence            5667789999999999983  2688899999999999999999999999999999888999999999999999 589999


Q ss_pred             CccEEEEEcCCCCCccccCCcchhHHHHHH
Q psy17502         88 GFPTVKIFSDKRNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        88 ~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i  117 (461)
                      ++||+++|++|+....|.|.++.+.|..|+
T Consensus        84 ~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          84 YFPVIHLYYRSRGPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             ccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence            999999999998889999999999999874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>KOG0191|consensus

Probab=99.89  E-value=1.1e-21  Score=189.76  Aligned_cols=280  Identities=29%  Similarity=0.535  Sum_probs=198.6

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      ...++...+...+...+.+++|.||++||++|+.+.+.|.++++.+++.+.++.|||+.+..+|.+|+|.++||+.+|.+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~  110 (383)
T KOG0191|consen   31 VSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRP  110 (383)
T ss_pred             hhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcC
Confidence            33445566666667888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhhccCCC--CCCc-ceeecCHHHHHHHh-cCCCeEEEEEeCCccccChhhHHHHH
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNKYTENV--PPPE-IKQIVSEATFKEAC-EDHPLCIVAVLPHILDCQSSCRNNYL  295 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~--~~p~-v~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~  295 (461)
                      +    .....|.|..+.+.+..|+........  ..+. +.+++..+...... ....+.+.++.|+     ....+.+.
T Consensus       111 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPw-----c~~ck~l~  181 (383)
T KOG0191|consen  111 G----KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPW-----CGHCKKLA  181 (383)
T ss_pred             C----CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccc-----cHHhhhcC
Confidence            8    368889999999999999988764322  1233 55554444332222 3445556656676     33445566


Q ss_pred             HHHHHHHHhccC-cceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHHHhcCCCCCC
Q psy17502        296 EILQKLGDKYKQ-KVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTA  374 (461)
Q Consensus       296 ~~~~~va~~~~~-~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~Gkl~~~  374 (461)
                      ..+.++|..+++ ....+..+|......+++.+++.  .+|++.++.........+.+.-+.++|..|+++...-...++
T Consensus       182 ~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~--~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~  259 (383)
T KOG0191|consen  182 PEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVR--GYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEP  259 (383)
T ss_pred             hHHHHHHHHhccCcceEEEeeccchHHHHhhhhccc--CCceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCc
Confidence            788899988874 22466666766677888999998  689998887665412234567799999999999874432111


Q ss_pred             CcCCCCCCCcccccCCCCCCCCCCcccccccCccccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHHHHHH
Q psy17502        375 PVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA  454 (461)
Q Consensus       375 ~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~~~la  454 (461)
                      .     +.+..      +++...|.        + .     +..+|.. .....++.++.||+|||+||..+.|.|+..|
T Consensus       260 ~-----~~~~~------~~~~~~~~--------~-~-----d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (383)
T KOG0191|consen  260 E-----LKEIE------DKDTFSPT--------F-L-----DTAEFLD-SLEKKKNKFVKFYAPWCGHCGGFAPVYEDKA  313 (383)
T ss_pred             c-----ccccc------Cccccccc--------h-h-----hhhhhhh-hhHHhhhhHhhhhcchhhcccccchhHHHHH
Confidence            1     11110      00000000        0 0     0001111 1234568899999999999999999999999


Q ss_pred             HH
Q psy17502        455 TA  456 (461)
Q Consensus       455 ~~  456 (461)
                      ..
T Consensus       314 ~~  315 (383)
T KOG0191|consen  314 EL  315 (383)
T ss_pred             hc
Confidence            87

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.89  E-value=1.9e-22  Score=157.08  Aligned_cols=99  Identities=30%  Similarity=0.823  Sum_probs=94.1

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      +|++||.++|++ .+.++++++|+||++||++|+++.|.|+++++++++.+.|++|||++++.+|++++|+++||+++|+
T Consensus         2 ~~~~l~~~~f~~-~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   80 (101)
T cd03003           2 EIVTLDRGDFDA-AVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP   80 (101)
T ss_pred             CeEEcCHhhHHH-HhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence            688999999999 6777899999999999999999999999999999988999999999999999999999999999999


Q ss_pred             CCCCCccccCCcchhHHHHH
Q psy17502         97 DKRNPTPYQGARTADAIIDV  116 (461)
Q Consensus        97 ~g~~~~~y~g~~~~~~i~~~  116 (461)
                      +|+...+|.|.++.+.|.+|
T Consensus        81 ~g~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          81 SGMNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             CCCCcccCCCCCCHHHHHhh
Confidence            99888999999999999887

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.88  E-value=8.7e-21  Score=190.60  Aligned_cols=224  Identities=22%  Similarity=0.357  Sum_probs=180.2

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh-hHhhcCCCCccEEEEE
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS-LSSSHGVTGFPTVKIF   95 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~P~l~~~   95 (461)
                      .+..+|.++|.. ....+.+.++.+  ..+.....+.+.+.++|+++++++.|+.+|+++.+. +++.+|+..+|++.+.
T Consensus       233 ~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~  309 (477)
T PTZ00102        233 LFAEINAENYRR-YISSGKDLVWFC--GTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQ  309 (477)
T ss_pred             ceeecCccchHH-HhcCCccEEEEe--cCHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCcccCceEEEE
Confidence            367788889988 666555443333  256677789999999999999999999999999886 8999999999998887


Q ss_pred             cCCCCCccccC----CcchhHHHHHHHHHHhhhhcCC-CCCC-CCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCCh
Q psy17502         96 SDKRNPTPYQG----ARTADAIIDVALEAIRQKVKGG-KSGG-RKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCG  169 (461)
Q Consensus        96 ~~g~~~~~y~g----~~~~~~i~~~i~~~~~~~~~~~-~~~~-~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~  169 (461)
                      ..++. ..+.+    ..+.+.|.+|+........... ++.. ......++..++.++|.+.+.+.+++++|.||++||+
T Consensus       310 ~~~~~-y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~  388 (477)
T PTZ00102        310 SPAGR-YLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCG  388 (477)
T ss_pred             cCCcc-cCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCH
Confidence            63322 22333    3789999999999876543311 1111 1223456888999999998778889999999999999


Q ss_pred             hhhhhhHHHHHHHHHhcC--ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        170 HCKNLEPHWEKAASELEG--KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       170 ~c~~~~~~~~~~a~~~~~--~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +|+.+.|.|.++|+.+++  .+.++.+|++.+...+++++++++|++++|+++.+   ....|.|.++.++|.+||.++.
T Consensus       389 ~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~---~~~~~~G~~~~~~l~~~i~~~~  465 (477)
T PTZ00102        389 HCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGER---TPIPYEGERTVEGFKEFVNKHA  465 (477)
T ss_pred             HHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCc---ceeEecCcCCHHHHHHHHHHcC
Confidence            999999999999998864  59999999999998999999999999999998742   3567999999999999999876

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.87  E-value=1.3e-21  Score=153.49  Aligned_cols=101  Identities=38%  Similarity=0.779  Sum_probs=93.7

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      .+++|+.++|++.+.+.+++++|.||++||++|+.+.|.|+++++++++.+.|+.|||++++++|++++|+++||+++|.
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~   81 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP   81 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence            57899999999966667789999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CC-CCCccccCCcc-hhHHHHHH
Q psy17502         97 DK-RNPTPYQGART-ADAIIDVA  117 (461)
Q Consensus        97 ~g-~~~~~y~g~~~-~~~i~~~i  117 (461)
                      +| +...+|.|..+ .++|.+|+
T Consensus        82 ~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          82 GNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             CCCCCceEccCCCCCHHHHHhhC
Confidence            87 78889999987 99998875

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.86  E-value=2.3e-21  Score=152.93  Aligned_cols=101  Identities=30%  Similarity=0.634  Sum_probs=92.6

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC------CceEEEEEecCCchhhHhhcCCCCc
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK------GVVKVGAVNADEEKSLSSSHGVTGF   89 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~------~~v~~~~vd~~~~~~l~~~~~i~~~   89 (461)
                      ++|++|++++|++ +++.+++++|.||||||++|+++.|.|+++++.++      +++.++.|||++++++|++|+|+++
T Consensus         1 ~~v~~l~~~~f~~-~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~   79 (108)
T cd02996           1 SEIVSLTSGNIDD-ILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKY   79 (108)
T ss_pred             CceEEcCHhhHHH-HHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcC
Confidence            4689999999999 78888999999999999999999999999998763      2589999999999999999999999


Q ss_pred             cEEEEEcCCC-CCccccCCcchhHHHHHH
Q psy17502         90 PTVKIFSDKR-NPTPYQGARTADAIIDVA  117 (461)
Q Consensus        90 P~l~~~~~g~-~~~~y~g~~~~~~i~~~i  117 (461)
                      ||+++|++|+ ....|.|.++.++|.+||
T Consensus        80 Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          80 PTLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            9999999987 458899999999999885

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.86  E-value=1.9e-21  Score=150.68  Aligned_cols=99  Identities=21%  Similarity=0.343  Sum_probs=90.0

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEEC--CCCH---hHHhhHHHHHHHHHHcCCceEEEEEec-----CCchhhHhhcCC
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYA--PWCG---HCQSFKDEYMKLATALKGVVKVGAVNA-----DEEKSLSSSHGV   86 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~--~~c~---~C~~~~~~~~~~a~~~~~~v~~~~vd~-----~~~~~l~~~~~i   86 (461)
                      .+++||+.||++ ++++++.+||.|||  |||+   +|+++.|++.+++..    |.+++|||     .++.+||++|+|
T Consensus         2 g~v~L~~~nF~~-~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~I   76 (116)
T cd03007           2 GCVDLDTVTFYK-VIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYKL   76 (116)
T ss_pred             CeeECChhhHHH-HHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhCC
Confidence            478999999999 89999999999999  9999   999999999888753    88999999     467889999999


Q ss_pred             C--CccEEEEEcCCC--CCccccCC-cchhHHHHHHHHH
Q psy17502         87 T--GFPTVKIFSDKR--NPTPYQGA-RTADAIIDVALEA  120 (461)
Q Consensus        87 ~--~~P~l~~~~~g~--~~~~y~g~-~~~~~i~~~i~~~  120 (461)
                      +  +||||++|++|.  .+..|.|. ++.++|++||.++
T Consensus        77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            9  999999999885  56789997 9999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.86  E-value=4.6e-21  Score=150.27  Aligned_cols=102  Identities=37%  Similarity=0.671  Sum_probs=96.5

Q ss_pred             ceEcCccchhHHHhcC-CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         18 VIKLTTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~-~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      |..+|+++|++ .+.+ +++++|+||++||++|+.+.|.|.++++.+.+++.|+.|||++++.+|++|+|.++|++++|+
T Consensus         1 v~~lt~~~f~~-~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   79 (103)
T PF00085_consen    1 VIVLTDENFEK-FINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFK   79 (103)
T ss_dssp             SEEESTTTHHH-HHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred             CEECCHHHHHH-HHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence            67899999999 5554 899999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCCCCccccCCcchhHHHHHHHHH
Q psy17502         97 DKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        97 ~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +|+...+|.|.++.+.|.+||+++
T Consensus        80 ~g~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   80 NGKEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCHHHHHHHHHcC
Confidence            998888999999999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>KOG0910|consensus

Probab=99.85  E-value=2.2e-21  Score=153.74  Aligned_cols=106  Identities=26%  Similarity=0.462  Sum_probs=101.6

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ..+..++..+|++.++++..|++|.|||+||++|+.+.|.+++++.++.|++.|++||.+++.+|+.+|+|+.+||+++|
T Consensus        43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf  122 (150)
T KOG0910|consen   43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF  122 (150)
T ss_pred             ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence            46778899999998999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++|+...++.|..+.+.+.+||.+.+
T Consensus       123 knGe~~d~~vG~~~~~~l~~~i~k~l  148 (150)
T KOG0910|consen  123 KNGEKVDRFVGAVPKEQLRSLIKKFL  148 (150)
T ss_pred             ECCEEeeeecccCCHHHHHHHHHHHh
Confidence            99999999999999999999999875

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.85  E-value=3.7e-21  Score=151.35  Aligned_cols=108  Identities=18%  Similarity=0.305  Sum_probs=94.8

Q ss_pred             CCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHh--HH--hhHHHHHHHHHHc--CCceEEEEEecCCchhhHhhcCC
Q psy17502         13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGH--CQ--SFKDEYMKLATAL--KGVVKVGAVNADEEKSLSSSHGV   86 (461)
Q Consensus        13 ~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~--C~--~~~~~~~~~a~~~--~~~v~~~~vd~~~~~~l~~~~~i   86 (461)
                      ...+.|++||++||++.+.+++.++++.|+++||++  |+  .+.|.+.++|.++  .+++.|++||++++++||++|||
T Consensus         6 ~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I   85 (120)
T cd03065           6 DGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL   85 (120)
T ss_pred             CCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence            345689999999999966666668888889999976  99  7788888888887  67899999999999999999999


Q ss_pred             CCccEEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         87 TGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        87 ~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +++||+++|++|+.+. |.|.++.+.|.+|+.+..
T Consensus        86 ~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          86 DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence            9999999999997655 999999999999998753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.85  E-value=1.6e-19  Score=181.06  Aligned_cols=226  Identities=25%  Similarity=0.471  Sum_probs=180.0

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEE--CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCC--Ccc
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYY--APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVT--GFP   90 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~--~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~--~~P   90 (461)
                      ..+..+|..++.. ..+.+ +.++.|+  ......|+.+...+.++|+++.+ .+.|+.+|+...+.+++.+|+.  .+|
T Consensus       217 p~v~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P  294 (462)
T TIGR01130       217 PLVGEFTQETAAK-YFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFP  294 (462)
T ss_pred             CceEeeCCcchhh-HhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCc
Confidence            3467788888888 55544 4444443  44666789999999999999996 8999999999999999999998  699


Q ss_pred             EEEEEcCCC-CCccccC-CcchhHHHHHHHHHHhhhhcCCCCCCC--CCCCCceeEcChhhhhhhhhcCCCeEEEEEeCC
Q psy17502         91 TVKIFSDKR-NPTPYQG-ARTADAIIDVALEAIRQKVKGGKSGGR--KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAP  166 (461)
Q Consensus        91 ~l~~~~~g~-~~~~y~g-~~~~~~i~~~i~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~  166 (461)
                      +++++...+ ....+.+ ..+.+.|.+|+..............+.  ......+..++..+|.+.+.+.+..++|.||++
T Consensus       295 ~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~  374 (462)
T TIGR01130       295 AVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAP  374 (462)
T ss_pred             eEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECC
Confidence            999997332 3344555 788999999999987544432111111  112456788999999998878889999999999


Q ss_pred             CChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        167 WCGHCKNLEPHWEKAASELEG---KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       167 ~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      ||++|+.+.+.|.++|+.+++   .+.|+.+|++.+. +.. +++.++|++++|+.+.+  ..+..|.|..+.++|.+|+
T Consensus       375 wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~--~~~~~~~g~~~~~~l~~~l  450 (462)
T TIGR01130       375 WCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAGKK--SEPVPYDGDRTLEDFSKFI  450 (462)
T ss_pred             CCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCCCC--cCceEecCcCCHHHHHHHH
Confidence            999999999999999999987   7999999998764 334 99999999999998743  2456799999999999999


Q ss_pred             Hhhc
Q psy17502        244 LNKY  247 (461)
Q Consensus       244 ~~~~  247 (461)
                      .++.
T Consensus       451 ~~~~  454 (462)
T TIGR01130       451 AKHA  454 (462)
T ss_pred             HhcC
Confidence            8876

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.83  E-value=3.8e-20  Score=144.19  Aligned_cols=99  Identities=33%  Similarity=0.618  Sum_probs=90.0

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      ++|++|+.++|++ +++++  ++|.|||+||++|+.+.|.|+++++.+++ ++.++.|||++++.+|++|+|.++||+++
T Consensus         1 ~~v~~l~~~~f~~-~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~   77 (101)
T cd02994           1 SNVVELTDSNWTL-VLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH   77 (101)
T ss_pred             CceEEcChhhHHH-HhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence            4689999999998 66443  89999999999999999999999998765 59999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVAL  118 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~  118 (461)
                      |++|+ ...|.|.++.++|.+|++
T Consensus        78 ~~~g~-~~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          78 AKDGV-FRRYQGPRDKEDLISFIE  100 (101)
T ss_pred             eCCCC-EEEecCCCCHHHHHHHHh
Confidence            99885 578999999999999986

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.82  E-value=6.5e-20  Score=145.19  Aligned_cols=101  Identities=47%  Similarity=0.856  Sum_probs=92.1

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC--chhhHhhcCCCCccEEEE
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE--EKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~   94 (461)
                      .|++|++++|++.+.+.+++++|.||++||++|+++.|.|+++++.+.+.+.++.|||++  ++++|++|+|+++|++++
T Consensus         1 ~v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~   80 (109)
T cd03002           1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV   80 (109)
T ss_pred             CeEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence            378999999999555666789999999999999999999999999998889999999998  889999999999999999


Q ss_pred             EcCCC-----CCccccCCcchhHHHHHH
Q psy17502         95 FSDKR-----NPTPYQGARTADAIIDVA  117 (461)
Q Consensus        95 ~~~g~-----~~~~y~g~~~~~~i~~~i  117 (461)
                      |.+|+     ....|.|.++.+.+.+||
T Consensus        81 ~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          81 FRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             EeCCCcccccccccccCccCHHHHHHHh
Confidence            99775     467899999999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=5.3e-20  Score=161.90  Aligned_cols=109  Identities=30%  Similarity=0.577  Sum_probs=102.2

Q ss_pred             CCCCceEcCccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccE
Q psy17502         14 SYSDVIKLTTSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPT   91 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   91 (461)
                      ....|.++|+.||.+.++++.  .|+||+||+|||++|+++.|.+++++.+++|++.+++|||++++.++.+|||+.+|+
T Consensus        21 ~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPt  100 (304)
T COG3118          21 AAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPT  100 (304)
T ss_pred             ccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCe
Confidence            345699999999999777644  499999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         92 VKIFSDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        92 l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      +++|.+|+.+..|.|....+.+.+|+.++..
T Consensus       101 V~af~dGqpVdgF~G~qPesqlr~~ld~~~~  131 (304)
T COG3118         101 VYAFKDGQPVDGFQGAQPESQLRQFLDKVLP  131 (304)
T ss_pred             EEEeeCCcCccccCCCCcHHHHHHHHHHhcC
Confidence            9999999999999999999999999999863

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.82  E-value=1.7e-19  Score=141.30  Aligned_cols=101  Identities=58%  Similarity=1.071  Sum_probs=92.6

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      +|.++++++|.+.+.+.+++++|+||++||++|+++.|.|.++++++.+++.++.+||+++++++++++|+++|++++|.
T Consensus         1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~   80 (103)
T cd03001           1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFG   80 (103)
T ss_pred             CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence            47899999999955566667999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CC-CCCccccCCcchhHHHHHH
Q psy17502         97 DK-RNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        97 ~g-~~~~~y~g~~~~~~i~~~i  117 (461)
                      +| .....|.|.++.+.|.+|+
T Consensus        81 ~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          81 AGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCCcceeecCCCCCHHHHHHHh
Confidence            77 5567899999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.81  E-value=1.1e-19  Score=141.97  Aligned_cols=99  Identities=32%  Similarity=0.712  Sum_probs=90.6

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ++++||.++|++ .+.++ .++|.||++||++|+.+.|.|.++++++++   ++.++.|||++++.+|++|+|.++|+++
T Consensus         1 ~~~~l~~~~f~~-~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   78 (102)
T cd03005           1 GVLELTEDNFDH-HIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLL   78 (102)
T ss_pred             CeeECCHHHHHH-HhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEE
Confidence            478999999999 56555 599999999999999999999999999976   6999999999999999999999999999


Q ss_pred             EEcCCCCCccccCCcchhHHHHHH
Q psy17502         94 IFSDKRNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        94 ~~~~g~~~~~y~g~~~~~~i~~~i  117 (461)
                      +|++|+...+|.|.++.++|.+||
T Consensus        79 ~~~~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          79 LFKDGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EEeCCCeeeEeeCCCCHHHHHhhC
Confidence            999988888899999999988875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.80  E-value=3.7e-19  Score=139.32  Aligned_cols=103  Identities=17%  Similarity=0.336  Sum_probs=93.5

Q ss_pred             CCceeEcChhhhhhh--hhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhh-hhcCcccccE
Q psy17502        137 SKAVVELTDSNFEKL--VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA-GEFNIRGYPT  213 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~--~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~-~~~~i~~~P~  213 (461)
                      .++|+.++.++|.+.  +.+++++++|.||++||++|+.+.|.|+++|+.+++.+.|+.|||+.+..+| ++|+|.++||
T Consensus         8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT   87 (113)
T cd03006           8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV   87 (113)
T ss_pred             CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence            357999999999986  2578899999999999999999999999999999888999999999999999 5899999999


Q ss_pred             EEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      +++|++|    .....|.|.++.+.|..|+
T Consensus        88 l~lf~~g----~~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          88 IHLYYRS----RGPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             EEEEECC----ccceEEeCCCCHHHHHhhC
Confidence            9999987    4578899999999998874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.80  E-value=4.3e-19  Score=140.29  Aligned_cols=107  Identities=24%  Similarity=0.521  Sum_probs=99.5

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      ++.|++++.++|.+.+++.+++++|+||++||++|+.+.|.|+++++++.+++.++.||++..+.++++|+|+++|++++
T Consensus         2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   81 (109)
T PRK09381          2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   81 (109)
T ss_pred             CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence            46799999999998677778899999999999999999999999999998889999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |++|+....+.|..+.+.|..|+..++
T Consensus        82 ~~~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         82 FKNGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            999887888999999999999998764

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.80  E-value=6e-18  Score=147.51  Aligned_cols=177  Identities=21%  Similarity=0.386  Sum_probs=145.7

Q ss_pred             hhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC-CCHHHHHHHHHhhccCC
Q psy17502        172 KNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG-RTSQDIVTWALNKYTEN  250 (461)
Q Consensus       172 ~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~~~  250 (461)
                      ......|.++|+.+++.+.|+.+   .+.++++++++.. |+|++|++++   +....|.|. ++.++|.+||..+.   
T Consensus         6 ~~~~~~f~~~A~~~~~~~~F~~~---~~~~~~~~~~~~~-p~i~~~k~~~---~~~~~y~~~~~~~~~l~~fI~~~~---   75 (184)
T PF13848_consen    6 SELFEIFEEAAEKLKGDYQFGVT---FNEELAKKYGIKE-PTIVVYKKFD---EKPVVYDGDKFTPEELKKFIKKNS---   75 (184)
T ss_dssp             SHHHHHHHHHHHHHTTTSEEEEE---E-HHHHHHCTCSS-SEEEEEECTT---TSEEEESSSTTSHHHHHHHHHHHS---
T ss_pred             cHHHHHHHHHHHhCcCCcEEEEE---cHHHHHHHhCCCC-CcEEEeccCC---CCceecccccCCHHHHHHHHHHhc---
Confidence            56788999999999989999997   4677999999997 9999999863   357889998 89999999999988   


Q ss_pred             CCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCC
Q psy17502        251 VPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIG  330 (461)
Q Consensus       251 ~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~  330 (461)
                        .|.+.+++..+....+..+.+.+++++.+    .+.+..+.+.+.++.+|+++++++ .|+++|....+++++.||+.
T Consensus        76 --~P~v~~~t~~n~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~a~~~~~~~-~f~~~d~~~~~~~~~~~~i~  148 (184)
T PF13848_consen   76 --FPLVPELTPENFEKLFSSPKPPVLILFDN----KDNESTEAFKKELQDIAKKFKGKI-NFVYVDADDFPRLLKYFGID  148 (184)
T ss_dssp             --STSCEEESTTHHHHHHSTSSEEEEEEEET----TTHHHHHHHHHHHHHHHHCTTTTS-EEEEEETTTTHHHHHHTTTT
T ss_pred             --cccccccchhhHHHHhcCCCceEEEEEEc----CCchhHHHHHHHHHHHHHhcCCeE-EEEEeehHHhHHHHHHcCCC
Confidence              89999999877666555555545555533    346678899999999999999986 77777877778899999999


Q ss_pred             CCCCccEEEEccCc-cccccCCCCCCHHHHHHHHHH
Q psy17502        331 GFGYPAMAVLNAKK-MKYSLLKGPFSYDGINEFLRD  365 (461)
Q Consensus       331 ~~~~P~l~i~~~~~-~k~~~~~~~~~~~~i~~Fi~~  365 (461)
                      +.++|+++|++..+ .++.++.++++.++|.+|+++
T Consensus       149 ~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  149 EDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             TSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             CccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            88999999999665 444456889999999999986

...

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.80  E-value=3.1e-19  Score=156.46  Aligned_cols=110  Identities=27%  Similarity=0.606  Sum_probs=98.3

Q ss_pred             CCCceEcCccchhHHHhc----CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCcc
Q psy17502         15 YSDVIKLTTSNFDDKVIK----SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFP   90 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~----~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   90 (461)
                      .+.|++||+++|++.+..    .+++++|+||+|||++|+++.|.|+++++++++.+.++.|||++++++|++|+|+++|
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P  108 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP  108 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence            467999999999994332    2479999999999999999999999999999988999999999999999999999999


Q ss_pred             EEEEEcCCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         91 TVKIFSDKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      |+++|.+|+....+.|.++.+++.+|+.+.....
T Consensus       109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~  142 (224)
T PTZ00443        109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA  142 (224)
T ss_pred             EEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence            9999999866666678899999999999987543

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.80  E-value=2.2e-19  Score=141.80  Aligned_cols=101  Identities=17%  Similarity=0.350  Sum_probs=90.9

Q ss_pred             eEcCccchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         19 IKLTTSNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        19 ~~l~~~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ..++.++|.+.++.  .+++++|.||+|||++|+.+.|.|+++++++++ ++.+++|||++++.++++++|+++||+++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~   86 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI   86 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence            35688889875654  568999999999999999999999999999976 599999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~  119 (461)
                      ++|+....+.|..+.+.+.+|+.+
T Consensus        87 ~~g~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          87 INGQVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             ECCEEEEEecCCCCHHHHHHHHhc
Confidence            999877778999999999999874

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.79  E-value=9e-19  Score=135.10  Aligned_cols=94  Identities=22%  Similarity=0.414  Sum_probs=85.7

Q ss_pred             cchhHHHhcC-CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCc
Q psy17502         24 SNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPT  102 (461)
Q Consensus        24 ~~f~~~~~~~-~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~  102 (461)
                      ++|++.+.+. +++++|.||++||++|+.+.|.++++++.+.+.+.++.||++++++++++|+|.++|++++|++|+...
T Consensus         1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~   80 (96)
T cd02956           1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD   80 (96)
T ss_pred             CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee
Confidence            3677745444 579999999999999999999999999999888999999999999999999999999999999988888


Q ss_pred             cccCCcchhHHHHHH
Q psy17502        103 PYQGARTADAIIDVA  117 (461)
Q Consensus       103 ~y~g~~~~~~i~~~i  117 (461)
                      ++.|..+.+.|..|+
T Consensus        81 ~~~g~~~~~~l~~~l   95 (96)
T cd02956          81 GFQGAQPEEQLRQML   95 (96)
T ss_pred             eecCCCCHHHHHHHh
Confidence            899999999999886

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.78  E-value=1.2e-18  Score=137.38  Aligned_cols=101  Identities=30%  Similarity=0.627  Sum_probs=88.5

Q ss_pred             CceEcCccchhHHHh--cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-chhhHhh-cCCCCccE
Q psy17502         17 DVIKLTTSNFDDKVI--KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-EKSLSSS-HGVTGFPT   91 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~--~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-~~~l~~~-~~i~~~P~   91 (461)
                      .|++++.++|+.++.  +++++++|.||++||++|+++.|.|.++++.++++ +.++.|||+. +..+|++ ++|+++||
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt   81 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT   81 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence            588999999999443  35689999999999999999999999999999874 9999999997 6788874 99999999


Q ss_pred             EEEEcCC-CCCccccCC-cchhHHHHHH
Q psy17502         92 VKIFSDK-RNPTPYQGA-RTADAIIDVA  117 (461)
Q Consensus        92 l~~~~~g-~~~~~y~g~-~~~~~i~~~i  117 (461)
                      +++|.+| .....|.|. ++.++|..||
T Consensus        82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            9999865 467889995 8999999885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PHA02278 thioredoxin-like protein

Probab=99.78  E-value=5.9e-19  Score=135.83  Aligned_cols=94  Identities=15%  Similarity=0.204  Sum_probs=84.1

Q ss_pred             CccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc----hhhHhhcCCCCccEEEEEcC
Q psy17502         22 TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE----KSLSSSHGVTGFPTVKIFSD   97 (461)
Q Consensus        22 ~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~P~l~~~~~   97 (461)
                      +.++|.+ .++++++++|.|||+||++|+.+.|.++++++++..++.|++||++.+    ++++++|+|.++||+++|++
T Consensus         3 ~~~~~~~-~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~   81 (103)
T PHA02278          3 SLVDLNT-AIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD   81 (103)
T ss_pred             CHHHHHH-HHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence            3467888 678889999999999999999999999999988666678999999976    68999999999999999999


Q ss_pred             CCCCccccCCcchhHHHHH
Q psy17502         98 KRNPTPYQGARTADAIIDV  116 (461)
Q Consensus        98 g~~~~~y~g~~~~~~i~~~  116 (461)
                      |+.+.++.|..+.+.+.++
T Consensus        82 G~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         82 GQLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             CEEEEEEeCCCCHHHHHhh
Confidence            9989999999888888765

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.78  E-value=8.3e-19  Score=137.62  Aligned_cols=100  Identities=40%  Similarity=0.761  Sum_probs=92.4

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC--CceEEEEEecCC--chhhHhhcCCCCccEE
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADE--EKSLSSSHGVTGFPTV   92 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~--~~v~~~~vd~~~--~~~l~~~~~i~~~P~l   92 (461)
                      +|++|++.+|++ .++++++++|+||++||++|+++.|.+.++++.+.  +.+.++.+||++  ++.++++++|+++|++
T Consensus         1 ~~~~l~~~~~~~-~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~   79 (104)
T cd02997           1 DVVHLTDEDFRK-FLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTF   79 (104)
T ss_pred             CeEEechHhHHH-HHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEE
Confidence            478899999998 77888899999999999999999999999999987  568999999998  8999999999999999


Q ss_pred             EEEcCCCCCccccCCcchhHHHHHH
Q psy17502         93 KIFSDKRNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~~~i~~~i  117 (461)
                      ++|++|+....|.|..+.+.+.+|+
T Consensus        80 ~~~~~g~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          80 KYFENGKFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEEeCCCeeEEeCCCCCHHHHHhhC
Confidence            9999988788999999999998875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.78  E-value=1.3e-18  Score=135.95  Aligned_cols=99  Identities=47%  Similarity=0.909  Sum_probs=92.0

Q ss_pred             cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC--ceEEEEEecCCchhhHhhcCCCCccEEEEEcCC
Q psy17502         21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG--VVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDK   98 (461)
Q Consensus        21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~--~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g   98 (461)
                      |+.++|.+ ++.++++++|+||++||++|+.+.+.|+++++.+++  ++.++.+||+++++++++|+|.++|++++|++|
T Consensus         1 l~~~~~~~-~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~   79 (102)
T TIGR01126         1 LTASNFDD-IVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG   79 (102)
T ss_pred             CchhhHHH-HhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence            57889999 677888999999999999999999999999999987  699999999999999999999999999999987


Q ss_pred             CCCccccCCcchhHHHHHHHHH
Q psy17502         99 RNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        99 ~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +.+..|.|..+.+.+..|+.++
T Consensus        80 ~~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        80 KKPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             CcceeecCCCCHHHHHHHHHhc
Confidence            6688999999999999999864

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PRK10996 thioredoxin 2; Provisional

Probab=99.77  E-value=2.6e-18  Score=141.16  Aligned_cols=104  Identities=27%  Similarity=0.527  Sum_probs=97.6

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ..+++++.++|++ +++++++++|.||++||++|+.+.|.|.++++++.+++.++.||++++++++++|+|+++|++++|
T Consensus        35 ~~~i~~~~~~~~~-~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~  113 (139)
T PRK10996         35 GEVINATGETLDK-LLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIF  113 (139)
T ss_pred             CCCEEcCHHHHHH-HHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEE
Confidence            4578899999999 788889999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      ++|+....+.|..+.+.|.+|+.+.
T Consensus       114 ~~G~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        114 KNGQVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             ECCEEEEEEcCCCCHHHHHHHHHHh
Confidence            9998888899999999999999865

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.77  E-value=3e-18  Score=134.44  Aligned_cols=99  Identities=39%  Similarity=0.753  Sum_probs=89.1

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC--ceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG--VVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~--~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      |.+|+.++|++.+.+.+++++|+||++||++|+.+.|.|.++++.+++  .+.++.+||+.+ +++..+++.++|++++|
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~   80 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF   80 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence            678999999994455568999999999999999999999999999876  599999999987 68899999999999999


Q ss_pred             cCCC--CCccccCCcchhHHHHHH
Q psy17502         96 SDKR--NPTPYQGARTADAIIDVA  117 (461)
Q Consensus        96 ~~g~--~~~~y~g~~~~~~i~~~i  117 (461)
                      .+|+  ...+|.|..+...|.+||
T Consensus        81 ~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          81 PAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             cCCCcCCceEccCCcCHHHHHhhC
Confidence            9876  567899999999999885

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.77  E-value=1.5e-18  Score=134.20  Aligned_cols=91  Identities=16%  Similarity=0.278  Sum_probs=78.9

Q ss_pred             ccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCC
Q psy17502         23 TSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNP  101 (461)
Q Consensus        23 ~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~  101 (461)
                      .++|++.+.. .+++++|.|||+||++|+.+.|.+++++.++.+.+.|++||++++++++++|+|+++||+++|++|+.+
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v   81 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM   81 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence            3567773332 567999999999999999999999999999988899999999999999999999999999999999888


Q ss_pred             ccccCCcchhHH
Q psy17502        102 TPYQGARTADAI  113 (461)
Q Consensus       102 ~~y~g~~~~~~i  113 (461)
                      .+..|..+...|
T Consensus        82 ~~~~G~~~~~~~   93 (114)
T cd02954          82 KIDLGTGNNNKI   93 (114)
T ss_pred             EEEcCCCCCceE
Confidence            777776555443

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.77  E-value=2.1e-18  Score=133.14  Aligned_cols=84  Identities=29%  Similarity=0.555  Sum_probs=78.2

Q ss_pred             cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-CchhhHhhcCCCCccEEEEEcCCCCCccccCCcch
Q psy17502         32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTA  110 (461)
Q Consensus        32 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~  110 (461)
                      .++++++|.|||+||++|+.+.|.|+++++.+++ +.++.||++ +.++++++|+|+++||+++|++| ...+|.|.++.
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~   93 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL   93 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence            4678999999999999999999999999999875 889999998 78999999999999999999988 78899999999


Q ss_pred             hHHHHHH
Q psy17502        111 DAIIDVA  117 (461)
Q Consensus       111 ~~i~~~i  117 (461)
                      +.|.+|+
T Consensus        94 ~~l~~f~  100 (100)
T cd02999          94 DSLAAFY  100 (100)
T ss_pred             HHHHhhC
Confidence            9999885

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.76  E-value=1.9e-17  Score=133.29  Aligned_cols=119  Identities=65%  Similarity=1.223  Sum_probs=109.3

Q ss_pred             CcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCC
Q psy17502        254 PEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFG  333 (461)
Q Consensus       254 p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~  333 (461)
                      |.+.++++++.+...|..+++|+++++|++.+++.++++.+++.++++|++|+++.+.|+|+|...+..+++.||+++.+
T Consensus         2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~   81 (130)
T cd02983           2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG   81 (130)
T ss_pred             CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence            67889999999998998899999999999889899999999999999999999995588999988888899999998778


Q ss_pred             CccEEEEccCccccccCCCCCCHHHHHHHHHHHhcCCCC
Q psy17502        334 YPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGH  372 (461)
Q Consensus       334 ~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~Gkl~  372 (461)
                      +|++++++..++||..+.+++|.++|.+|++++++|++.
T Consensus        82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl~  120 (130)
T cd02983          82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRGP  120 (130)
T ss_pred             CCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCcc
Confidence            999999998767998788999999999999999999985

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.76  E-value=9.5e-18  Score=130.55  Aligned_cols=100  Identities=32%  Similarity=0.814  Sum_probs=91.4

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      .++.++.++|++.+ ..+++++|.||++||++|+.+.+.|.++|+.+++.+.|+.+||+.++.+|++++|.++|++++|+
T Consensus         2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   80 (101)
T cd03003           2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP   80 (101)
T ss_pred             CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence            47789999999876 56689999999999999999999999999999988999999999999999999999999999999


Q ss_pred             CCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        219 PGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      +|    .....|.|.++.++|.+|.
T Consensus        81 ~g----~~~~~~~G~~~~~~l~~f~  101 (101)
T cd03003          81 SG----MNPEKYYGDRSKESLVKFA  101 (101)
T ss_pred             CC----CCcccCCCCCCHHHHHhhC
Confidence            87    3567899999999998873

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>KOG0912|consensus

Probab=99.75  E-value=4.3e-17  Score=142.23  Aligned_cols=200  Identities=23%  Similarity=0.445  Sum_probs=143.6

Q ss_pred             cChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-----CceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       143 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-----~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ++.++++.. .+++..++|.|||+||+.++.+.|+|.++|..++     +++.+|.|||+.+..++.+|.|..|||+.+|
T Consensus         1 lt~~N~~~i-l~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf   79 (375)
T KOG0912|consen    1 LTSENIDSI-LDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF   79 (375)
T ss_pred             CccccHHHh-hccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee
Confidence            356677775 4779999999999999999999999999998886     5799999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHH
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEI  297 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  297 (461)
                      ++|-.   ....|.|.++.+.+.+||.++.     --.+.++.+.+.+.....+..-.++++++.      .+...+ +.
T Consensus        80 rnG~~---~~rEYRg~RsVeaL~efi~kq~-----s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~------kdspey-~~  144 (375)
T KOG0912|consen   80 RNGEM---MKREYRGQRSVEALIEFIEKQL-----SDPINEFESLDQLQNLDIPSKRTVIGYFPS------KDSPEY-DN  144 (375)
T ss_pred             eccch---hhhhhccchhHHHHHHHHHHHh-----ccHHHHHHhHHHHHhhhccccceEEEEecc------CCCchH-HH
Confidence            99931   3447999999999999999887     223666666667766666566667777663      122222 56


Q ss_pred             HHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCc-cccccCCCCC-CHHHHHHHHHHH
Q psy17502        298 LQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKK-MKYSLLKGPF-SYDGINEFLRDL  366 (461)
Q Consensus       298 ~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~-~k~~~~~~~~-~~~~i~~Fi~~~  366 (461)
                      ++++|.-+++.. .|+..-++    +..  .....+.+ +.++++.. ..-..+.|.+ +.+.+.+||++=
T Consensus       145 ~~kva~~lr~dc-~f~V~~gD----~~~--~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dK  207 (375)
T KOG0912|consen  145 LRKVASLLRDDC-VFLVGFGD----LLK--PHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDK  207 (375)
T ss_pred             HHHHHHHHhhcc-EEEeeccc----ccc--CCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhc
Confidence            788888888876 33211111    111  11111222 44556554 2222456766 568899999873

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.75  E-value=9.1e-18  Score=131.52  Aligned_cols=102  Identities=40%  Similarity=0.820  Sum_probs=92.9

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      .+..++.++|++.+.+.+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+||+++.++|++++|.++|++++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~   81 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP   81 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence            46789999999988777889999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCCCCCcCcccccCCCC-HHHHHHHH
Q psy17502        219 PGSRSASDAQEYNGGRT-SQDIVTWA  243 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~-~~~i~~fi  243 (461)
                      +|++   ....|.|..+ .++|.+|+
T Consensus        82 ~g~~---~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          82 GNAS---KYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             CCCC---CceEccCCCCCHHHHHhhC
Confidence            8732   5778999886 99998885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.75  E-value=6.9e-18  Score=132.62  Aligned_cols=100  Identities=42%  Similarity=0.849  Sum_probs=89.9

Q ss_pred             CceEcCccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC--CceEEEEEecCC-chhhHhhcCCCCccEE
Q psy17502         17 DVIKLTTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADE-EKSLSSSHGVTGFPTV   92 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~--~~v~~~~vd~~~-~~~l~~~~~i~~~P~l   92 (461)
                      +|.+|+.++|++ +++ .+++++|+||++||++|+++.|.|.++++.++  +.+.++.+||++ ++++|++++|+++|++
T Consensus         1 ~~~~l~~~~~~~-~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~   79 (105)
T cd02998           1 NVVELTDSNFDK-VVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTL   79 (105)
T ss_pred             CeEEcchhcHHH-HhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence            367899999999 555 45599999999999999999999999999987  469999999999 9999999999999999


Q ss_pred             EEEcCC-CCCccccCCcchhHHHHHH
Q psy17502         93 KIFSDK-RNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        93 ~~~~~g-~~~~~y~g~~~~~~i~~~i  117 (461)
                      ++|.+| +....|.|.++.+.|.+|+
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          80 KFFPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EEEeCCCCCccccCCccCHHHHHhhC
Confidence            999865 5678899999999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.75  E-value=1.8e-17  Score=129.79  Aligned_cols=103  Identities=36%  Similarity=0.730  Sum_probs=95.7

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      |..+|.++|++.+.+++++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++.++.++++|+|.++|++++|++
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   80 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN   80 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence            46789999999986668999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      |    .....|.|..+.+.|.+||.+|
T Consensus        81 g----~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   81 G----KEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             T----EEEEEEESSSSHHHHHHHHHHH
T ss_pred             C----cEEEEEECCCCHHHHHHHHHcC
Confidence            8    4566899999999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.74  E-value=8.6e-18  Score=128.89  Aligned_cols=98  Identities=17%  Similarity=0.221  Sum_probs=91.1

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCC--CHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPW--CGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~--c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      .+...++..||++ .+..+..++|.||++|  |++|+.+.|.++++++++.+++.|++||++++++++.+|+|+++||++
T Consensus        10 ~~~~~~~~~~~~~-~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli   88 (111)
T cd02965          10 HGWPRVDAATLDD-WLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL   88 (111)
T ss_pred             cCCcccccccHHH-HHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence            4577899999998 7788899999999997  999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCccccCCcchhHHH
Q psy17502         94 IFSDKRNPTPYQGARTADAII  114 (461)
Q Consensus        94 ~~~~g~~~~~y~g~~~~~~i~  114 (461)
                      +|++|+.+..+.|..+.+++.
T Consensus        89 ~fkdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          89 FFRDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             EEECCEEEEEEeCccCHHHHh
Confidence            999998888999988877664

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.74  E-value=9.5e-18  Score=138.10  Aligned_cols=98  Identities=16%  Similarity=0.426  Sum_probs=85.5

Q ss_pred             cccCCCCCCceEcCccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCC
Q psy17502          9 HCLYPSYSDVIKLTTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGV   86 (461)
Q Consensus         9 ~~~~~~~~~v~~l~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i   86 (461)
                      ...+...+.+.++++++|++.+.. .+++++|.||++||++|+.+.|.|+++++++++ ++.|++||++++++++++|+|
T Consensus        21 ~~~~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V  100 (152)
T cd02962          21 QPLYMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV  100 (152)
T ss_pred             CCccCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc
Confidence            334445678999999999994333 346999999999999999999999999999875 599999999999999999999


Q ss_pred             CC------ccEEEEEcCCCCCccccC
Q psy17502         87 TG------FPTVKIFSDKRNPTPYQG  106 (461)
Q Consensus        87 ~~------~P~l~~~~~g~~~~~y~g  106 (461)
                      ..      +||+++|++|+...++.|
T Consensus       101 ~~~~~v~~~PT~ilf~~Gk~v~r~~G  126 (152)
T cd02962         101 STSPLSKQLPTIILFQGGKEVARRPY  126 (152)
T ss_pred             eecCCcCCCCEEEEEECCEEEEEEec
Confidence            88      999999999988888877

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.73  E-value=1.7e-17  Score=128.94  Aligned_cols=96  Identities=17%  Similarity=0.330  Sum_probs=85.2

Q ss_pred             cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCchhhHhhcCCCCccEEEEEcCCC
Q psy17502         21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKR   99 (461)
Q Consensus        21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~   99 (461)
                      -+.++|++ +++++++++|+|||+||++|+.+.|.++++++.+++. +.|+.||++ +++++++|+|+++||+++|++|+
T Consensus         5 ~~~~~~~~-~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~   82 (102)
T cd02948           5 NNQEEWEE-LLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE   82 (102)
T ss_pred             cCHHHHHH-HHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence            46788898 7888999999999999999999999999999999754 889999999 78899999999999999999998


Q ss_pred             CCccccCCcchhHHHHHHHH
Q psy17502        100 NPTPYQGARTADAIIDVALE  119 (461)
Q Consensus       100 ~~~~y~g~~~~~~i~~~i~~  119 (461)
                      ...+..|. +.+.+.++|..
T Consensus        83 ~~~~~~G~-~~~~~~~~i~~  101 (102)
T cd02948          83 LVAVIRGA-NAPLLNKTITE  101 (102)
T ss_pred             EEEEEecC-ChHHHHHHHhh
Confidence            77778885 77788877753

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.73  E-value=1.8e-17  Score=129.17  Aligned_cols=98  Identities=41%  Similarity=0.886  Sum_probs=90.0

Q ss_pred             eEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHc--CCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL--KGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        19 ~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~--~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      ++|+.++|.+ .++++++++|+||++||++|+.+.|.|.++++.+  .+.+.++.|||++++.++++|+|+++|++++|.
T Consensus         1 ~~l~~~~~~~-~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~   79 (101)
T cd02961           1 VELTDDNFDE-LVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFP   79 (101)
T ss_pred             CcccHHHHHH-HHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEc
Confidence            3688899999 7777779999999999999999999999999999  567999999999999999999999999999999


Q ss_pred             CC-CCCccccCCcchhHHHHHH
Q psy17502         97 DK-RNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        97 ~g-~~~~~y~g~~~~~~i~~~i  117 (461)
                      ++ ....+|.|..+.+.+.+|+
T Consensus        80 ~~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          80 NGSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CCCcccccCCCCcCHHHHHhhC
Confidence            76 7888999999999998874

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.73  E-value=2.3e-17  Score=128.43  Aligned_cols=95  Identities=19%  Similarity=0.282  Sum_probs=79.8

Q ss_pred             CccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch---hhHhhcCCCCccEEEEEcC
Q psy17502         22 TTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK---SLSSSHGVTGFPTVKIFSD   97 (461)
Q Consensus        22 ~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~P~l~~~~~   97 (461)
                      +.++|++.+.+ .+++++|.|||+||++|+.+.|.++++++++ +.+.|+.||++++.   +++++|+|+++||+++|++
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~   80 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD   80 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence            45678884332 3789999999999999999999999999999 56999999998874   8999999999999999999


Q ss_pred             CCCCccccCCcchhHHHHHHH
Q psy17502         98 KRNPTPYQGARTADAIIDVAL  118 (461)
Q Consensus        98 g~~~~~y~g~~~~~~i~~~i~  118 (461)
                      |+...++.|.. ...+.+-+.
T Consensus        81 G~~v~~~~G~~-~~~l~~~~~  100 (103)
T cd02985          81 GEKIHEEEGIG-PDELIGDVL  100 (103)
T ss_pred             CeEEEEEeCCC-HHHHHHHHH
Confidence            98888899954 455555443

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.72  E-value=5e-17  Score=127.13  Aligned_cols=98  Identities=36%  Similarity=0.845  Sum_probs=85.8

Q ss_pred             eEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        19 ~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      +++ +++|++ + .++++++|.||++||++|+.+.|.|+++++.+++   .+.++.+||+..+.++++++|.++|++++|
T Consensus         3 ~~~-~~~~~~-~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~   79 (104)
T cd03000           3 LDL-DDSFKD-V-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLL   79 (104)
T ss_pred             eec-hhhhhh-h-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEE
Confidence            344 378887 5 4567999999999999999999999999999853   499999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      .+| ....|.|..+.+.+..|+++.
T Consensus        80 ~~~-~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          80 KGD-LAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             cCC-CceeecCCCCHHHHHHHHHhh
Confidence            765 567799999999999999864

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>TIGR01068 thioredoxin thioredoxin

Probab=99.72  E-value=4.1e-17  Score=127.18  Aligned_cols=100  Identities=29%  Similarity=0.570  Sum_probs=89.7

Q ss_pred             cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502         21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN  100 (461)
Q Consensus        21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~  100 (461)
                      ++.++|.+.+...+++++|+||++||++|+.+.|.+.++++++.+++.|+.||+++++.++++|+|.++|++++|++|+.
T Consensus         1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~   80 (101)
T TIGR01068         1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE   80 (101)
T ss_pred             CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence            46778888443445699999999999999999999999999998889999999999999999999999999999998887


Q ss_pred             CccccCCcchhHHHHHHHHH
Q psy17502        101 PTPYQGARTADAIIDVALEA  120 (461)
Q Consensus       101 ~~~y~g~~~~~~i~~~i~~~  120 (461)
                      ...+.|..+.+.+..|+.+.
T Consensus        81 ~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        81 VDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             eeeecCCCCHHHHHHHHHhh
Confidence            78889999999999999864

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.71  E-value=6.7e-17  Score=125.42  Aligned_cols=100  Identities=19%  Similarity=0.345  Sum_probs=85.5

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeC--CCCh---hhhhhhHHHHHHHHHhcCceEEEEEeC-----cccHhhhhhcCcc
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFA--PWCG---HCKNLEPHWEKAASELEGKVKLGAVDA-----TVHQRIAGEFNIR  209 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~--~~c~---~c~~~~~~~~~~a~~~~~~i~f~~v~~-----~~~~~l~~~~~i~  209 (461)
                      ++.|+..+|++.+ ..++.++|.||+  |||+   +|+.+.+.|.+++.    .+.+|.|||     +++.+||++|+|+
T Consensus         3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~   77 (116)
T cd03007           3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD   77 (116)
T ss_pred             eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence            6789999999976 778899999999  9998   77777777777664    489999999     5678999999999


Q ss_pred             --cccEEEEEcCCCCCCcCcccccCC-CCHHHHHHHHHhh
Q psy17502        210 --GYPTIKFFSPGSRSASDAQEYNGG-RTSQDIVTWALNK  246 (461)
Q Consensus       210 --~~P~i~~~~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~  246 (461)
                        ++|||++|++|..  ..+..|+|. ++.++|++||.++
T Consensus        78 ~~gyPTl~lF~~g~~--~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          78 KESYPVIYLFHGGDF--ENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             cCCCCEEEEEeCCCc--CCCccCCCCcccHHHHHHHHHhc
Confidence              9999999998821  246789996 9999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>KOG0910|consensus

Probab=99.71  E-value=5.1e-17  Score=129.04  Aligned_cols=104  Identities=34%  Similarity=0.553  Sum_probs=96.5

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      +...+..+|++.+++++.|++|.|+|+||++|+.+.|.+++++..+.+.++|+.+|.+++.+++.+|+|..+||+++|++
T Consensus        45 ~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfkn  124 (150)
T KOG0910|consen   45 FNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKN  124 (150)
T ss_pred             ccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEEC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |    +....+.|..+.+.+.+||.+..
T Consensus       125 G----e~~d~~vG~~~~~~l~~~i~k~l  148 (150)
T KOG0910|consen  125 G----EKVDRFVGAVPKEQLRSLIKKFL  148 (150)
T ss_pred             C----EEeeeecccCCHHHHHHHHHHHh
Confidence            9    45668889999999999998753

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.71  E-value=9.8e-17  Score=126.44  Aligned_cols=101  Identities=35%  Similarity=0.697  Sum_probs=89.9

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc------CceEEEEEeCcccHhhhhhcCccccc
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE------GKVKLGAVDATVHQRIAGEFNIRGYP  212 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~------~~i~f~~v~~~~~~~l~~~~~i~~~P  212 (461)
                      .+..++.++|++.+ +.+++++|.||++||++|+.+.+.|+++|+.++      +.+.|+.+||+.+.+++++|+|.++|
T Consensus         2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P   80 (108)
T cd02996           2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP   80 (108)
T ss_pred             ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence            47889999999875 677899999999999999999999999998764      25899999999999999999999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      ++++|++|..   ....|.|.++.++|.+||
T Consensus        81 tl~~~~~g~~---~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          81 TLKLFRNGMM---MKREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEEeCCcC---cceecCCCCCHHHHHhhC
Confidence            9999998831   357899999999999985

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>KOG4277|consensus

Probab=99.71  E-value=1.6e-16  Score=138.19  Aligned_cols=186  Identities=30%  Similarity=0.567  Sum_probs=125.8

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccc
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEY  230 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y  230 (461)
                      .++..|+|.||+|||+||+.+.|+|.++...+++   .++.+++||+..+.++.+++|++||||.+|+.+     ....|
T Consensus        41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd-----~a~dY  115 (468)
T KOG4277|consen   41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD-----HAIDY  115 (468)
T ss_pred             ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC-----eeeec
Confidence            4567999999999999999999999999988874   599999999999999999999999999999987     78899


Q ss_pred             cCCCCHHHHHHHHHhhccCCCCCCcceeecCHH-HHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcc
Q psy17502        231 NGGRTSQDIVTWALNKYTENVPPPEIKQIVSEA-TFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV  309 (461)
Q Consensus       231 ~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~  309 (461)
                      .|.++.++|++|..+-.     .|.+..++... ....+...+.+..+++     +.++.   -+.+.+.++|...    
T Consensus       116 RG~R~Kd~iieFAhR~a-----~aiI~pi~enQ~~fehlq~Rhq~ffVf~-----Gtge~---PL~d~fidAASe~----  178 (468)
T KOG4277|consen  116 RGGREKDAIIEFAHRCA-----AAIIEPINENQIEFEHLQARHQPFFVFF-----GTGEG---PLFDAFIDAASEK----  178 (468)
T ss_pred             CCCccHHHHHHHHHhcc-----cceeeecChhHHHHHHHhhccCceEEEE-----eCCCC---cHHHHHHHHhhhh----
Confidence            99999999999997754     56666665422 2333334445545543     21122   2233444444432    


Q ss_pred             eEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHHH
Q psy17502        310 WGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDL  366 (461)
Q Consensus       310 f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~  366 (461)
                      |.+...- ..+.+++-... +....|++++++-.  .|.. ..+.+.+++.+||+.-
T Consensus       179 ~~~a~Ff-SaseeVaPe~~-~~kempaV~VFKDe--tf~i-~de~dd~dLseWinRE  230 (468)
T KOG4277|consen  179 FSVARFF-SASEEVAPEEN-DAKEMPAVAVFKDE--TFEI-EDEGDDEDLSEWINRE  230 (468)
T ss_pred             eeeeeee-ccccccCCccc-chhhccceEEEccc--eeEE-EecCchhHHHHHHhHh
Confidence            2222111 11112221111 12257999988533  3433 2345678899999764

>PTZ00062 glutaredoxin; Provisional

Probab=99.70  E-value=3.3e-16  Score=134.95  Aligned_cols=162  Identities=14%  Similarity=0.182  Sum_probs=116.7

Q ss_pred             CccchhHHHhcCC-CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502         22 TTSNFDDKVIKSD-EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN  100 (461)
Q Consensus        22 ~~~~f~~~~~~~~-~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~  100 (461)
                      +.+.|++ +++++ +.++++|+|+||++|+++.|.+.++++++.+ +.|+.||++        |+|.++|++++|++|+.
T Consensus         5 ~~ee~~~-~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~~~g~~   74 (204)
T PTZ00062          5 KKEEKDK-LIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFYQNSQL   74 (204)
T ss_pred             CHHHHHH-HHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEEECCEE
Confidence            4567888 55544 7899999999999999999999999999854 999999977        99999999999999999


Q ss_pred             CccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEE---eCCCChhhhhhhHH
Q psy17502        101 PTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEF---FAPWCGHCKNLEPH  177 (461)
Q Consensus       101 ~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f---~~~~c~~c~~~~~~  177 (461)
                      +.++.|.. +..+..++.+.....              +. ....+...+. .+++++++..=   ..|+|++|+.....
T Consensus        75 i~r~~G~~-~~~~~~~~~~~~~~~--------------~~-~~~~~~v~~l-i~~~~Vvvf~Kg~~~~p~C~~C~~~k~~  137 (204)
T PTZ00062         75 INSLEGCN-TSTLVSFIRGWAQKG--------------SS-EDTVEKIERL-IRNHKILLFMKGSKTFPFCRFSNAVVNM  137 (204)
T ss_pred             EeeeeCCC-HHHHHHHHHHHcCCC--------------CH-HHHHHHHHHH-HhcCCEEEEEccCCCCCCChhHHHHHHH
Confidence            89988765 778888888775211              00 1112334443 34444333322   22699999888777


Q ss_pred             HHHHHHHhcCceEEEEEeCcccHhhhhh----cCcccccEEEE
Q psy17502        178 WEKAASELEGKVKLGAVDATVHQRIAGE----FNIRGYPTIKF  216 (461)
Q Consensus       178 ~~~~a~~~~~~i~f~~v~~~~~~~l~~~----~~i~~~P~i~~  216 (461)
                      +.+.      .+.|..+|...++++.+.    -|..++|.|++
T Consensus       138 L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI  174 (204)
T PTZ00062        138 LNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV  174 (204)
T ss_pred             HHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence            7752      466777777666554333    35556787665

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.70  E-value=1.5e-16  Score=125.78  Aligned_cols=104  Identities=45%  Similarity=0.918  Sum_probs=92.9

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc--cHhhhhhcCcccccEEEEE
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV--HQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~--~~~l~~~~~i~~~P~i~~~  217 (461)
                      ++.++.+++.+.+.+.+.+++|.||++||++|+.+.+.|.++++.+.+.+.|+.+||+.  +.+++++|+|.++|++++|
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~   81 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF   81 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence            67899999999887778889999999999999999999999999998889999999998  8899999999999999999


Q ss_pred             cCCCCC-CcCcccccCCCCHHHHHHHH
Q psy17502        218 SPGSRS-ASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       218 ~~~~~~-~~~~~~y~g~~~~~~i~~fi  243 (461)
                      +++... ......|.|.++.++|.+||
T Consensus        82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          82 RPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             eCCCcccccccccccCccCHHHHHHHh
Confidence            988411 01456799999999999998

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.70  E-value=1.3e-16  Score=125.66  Aligned_cols=102  Identities=19%  Similarity=0.341  Sum_probs=91.5

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChh--hh--hhhHHHHHHHHHh--cCceEEEEEeCcccHhhhhhcCccccc
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGH--CK--NLEPHWEKAASEL--EGKVKLGAVDATVHQRIAGEFNIRGYP  212 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~--c~--~~~~~~~~~a~~~--~~~i~f~~v~~~~~~~l~~~~~i~~~P  212 (461)
                      .+..+|+++|++.+.+++.++++.|++.||++  |+  .+.|.+.++|..+  .+.+.|++||++.+++++++|+|.++|
T Consensus        10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iP   89 (120)
T cd03065          10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEED   89 (120)
T ss_pred             ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcccc
Confidence            58889999999998888889999999999976  99  7788888888877  678999999999999999999999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      |+++|++|     +...|.|.++.+.|.+||.+
T Consensus        90 Tl~lfk~G-----~~v~~~G~~~~~~l~~~l~~  117 (120)
T cd03065          90 SIYVFKDD-----EVIEYDGEFAADTLVEFLLD  117 (120)
T ss_pred             EEEEEECC-----EEEEeeCCCCHHHHHHHHHH
Confidence            99999998     33459999999999999975

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.69  E-value=1.4e-16  Score=153.55  Aligned_cols=109  Identities=28%  Similarity=0.659  Sum_probs=93.8

Q ss_pred             cccCCCCCCceEcCccchhHHHhc---CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCch-hhH-h
Q psy17502          9 HCLYPSYSDVIKLTTSNFDDKVIK---SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEK-SLS-S   82 (461)
Q Consensus         9 ~~~~~~~~~v~~l~~~~f~~~~~~---~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~-~l~-~   82 (461)
                      ..++ .+..|++||.+||++ +++   .++++||.||||||++|+.+.|.|+++++++.+. +.|+.|||+.+. .++ +
T Consensus       345 ~dl~-~~~~Vv~L~~~nf~~-~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~  422 (463)
T TIGR00424       345 ADIF-DSNNVVSLSRPGIEN-LLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQ  422 (463)
T ss_pred             cccc-CCCCeEECCHHHHHH-HHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHH
Confidence            3444 566899999999999 543   7789999999999999999999999999999874 899999999764 454 7


Q ss_pred             hcCCCCccEEEEEcCCC-CCcccc-CCcchhHHHHHHHH
Q psy17502         83 SHGVTGFPTVKIFSDKR-NPTPYQ-GARTADAIIDVALE  119 (461)
Q Consensus        83 ~~~i~~~P~l~~~~~g~-~~~~y~-g~~~~~~i~~~i~~  119 (461)
                      +|+|.++||+++|++|. ....|. |.++.+.|..||+.
T Consensus       423 ~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       423 ELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             HcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence            89999999999999774 467797 58999999999974

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>KOG1731|consensus

Probab=99.69  E-value=9.8e-17  Score=152.31  Aligned_cols=232  Identities=20%  Similarity=0.358  Sum_probs=147.5

Q ss_pred             cccccCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCC--chhhH
Q psy17502          7 SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADE--EKSLS   81 (461)
Q Consensus         7 ~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~--~~~l~   81 (461)
                      ...++++..+.|++|+.++|...+...++..+|.||++|||||+++.|.|.++|+.+..   -+.++.|||.+  +..+|
T Consensus        30 ~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC  109 (606)
T KOG1731|consen   30 SNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC  109 (606)
T ss_pred             CCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence            34566777899999999999995555666999999999999999999999999998864   58999999964  57899


Q ss_pred             hhcCCCCccEEEEEcCCCCC----ccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeE-cChhhhhhhhhcCC
Q psy17502         82 SSHGVTGFPTVKIFSDKRNP----TPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVE-LTDSNFEKLVYNSD  156 (461)
Q Consensus        82 ~~~~i~~~P~l~~~~~g~~~----~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~~~~~~~~  156 (461)
                      +.|+|.+||+|.+|..+...    ..+.|.....++...+.+.+.+.......+.++.-. ++.. -+-+++.+.+....
T Consensus       110 Ref~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~-pl~~~~~~~~l~~~~~~~~  188 (606)
T KOG1731|consen  110 REFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFD-PLKDTTTLEELDEGISTTA  188 (606)
T ss_pred             hhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCC-CCCCcchHHHHhccccccc
Confidence            99999999999999843222    456777778888887777665443311111222111 1211 12233333322222


Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCC
Q psy17502        157 DIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT  235 (461)
Q Consensus       157 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~  235 (461)
                      ..+.+.|-..      ...-.+..+-..+. +.+....+-+++.-.+.. +++.+.|...++++|....--+..+.++..
T Consensus       189 ~yvAiv~e~~------~s~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y  261 (606)
T KOG1731|consen  189 NYVAIVFETE------PSDLGWANLLNDLPSKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAY  261 (606)
T ss_pred             ceeEEEEecC------CcccHHHHHHhhccCCCcceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHH
Confidence            3444555322      12224444444443 234444444444444555 889999999999999432212222333334


Q ss_pred             HHHHHHHHHhh
Q psy17502        236 SQDIVTWALNK  246 (461)
Q Consensus       236 ~~~i~~fi~~~  246 (461)
                      .+.|-+++-+.
T Consensus       262 ~~~I~~~lg~~  272 (606)
T KOG1731|consen  262 VKKIDDLLGDK  272 (606)
T ss_pred             HHHHHHHhcCc
Confidence            46666666444

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.69  E-value=1.4e-16  Score=124.66  Aligned_cols=93  Identities=22%  Similarity=0.351  Sum_probs=83.8

Q ss_pred             cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCC----chhhHhhcCCCCccEEEEEc
Q psy17502         24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADE----EKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~P~l~~~~   96 (461)
                      ++|.+ +++++++++|+||++||++|+.+.+.+   .++++.+++++.++.||+++    .++++++|+|.++||+++|+
T Consensus         2 ~~~~~-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~   80 (104)
T cd02953           2 AALAQ-ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG   80 (104)
T ss_pred             HHHHH-HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence            46777 788899999999999999999999988   67888887689999999987    57899999999999999998


Q ss_pred             --CCCCCccccCCcchhHHHHHH
Q psy17502         97 --DKRNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        97 --~g~~~~~y~g~~~~~~i~~~i  117 (461)
                        +|+.+.++.|..+.++|.+++
T Consensus        81 ~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          81 PGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CCCCCCCcccccccCHHHHHHHh
Confidence              688889999999999998876

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.69  E-value=3e-16  Score=124.20  Aligned_cols=97  Identities=36%  Similarity=0.779  Sum_probs=79.7

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCC--chhhHhhcCCCCccE
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADE--EKSLSSSHGVTGFPT   91 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~--~~~l~~~~~i~~~P~   91 (461)
                      .+++|+.++|.+.+.+.+++++|.||++||++|+.+.|.|+++++++++   .+.|+.|||+.  ++++|++|+|+++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            5889999999995555567999999999999999999999999998853   59999999864  578999999999999


Q ss_pred             EEEEcCCCCC----ccccCC-cchhHH
Q psy17502         92 VKIFSDKRNP----TPYQGA-RTADAI  113 (461)
Q Consensus        92 l~~~~~g~~~----~~y~g~-~~~~~i  113 (461)
                      +++|++|...    ..|.|. +..+.+
T Consensus        82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~  108 (114)
T cd02992          82 LRYFPPFSKEATDGLKQEGPERDVNEL  108 (114)
T ss_pred             EEEECCCCccCCCCCcccCCccCHHHH
Confidence            9999976422    345665 444443

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.69  E-value=4.3e-17  Score=129.28  Aligned_cols=93  Identities=18%  Similarity=0.319  Sum_probs=81.6

Q ss_pred             CCceEcCccchhHHHhcC--CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~--~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ..+.++++++|.+.+.+.  +++++|+||+|||++|+.+.|.++++++++.+ +.|++||++++ +++++|+|.++||++
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~   81 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLL   81 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence            457899999999944444  27999999999999999999999999999865 89999999988 999999999999999


Q ss_pred             EEcCCCCCccccCCcch
Q psy17502         94 IFSDKRNPTPYQGARTA  110 (461)
Q Consensus        94 ~~~~g~~~~~y~g~~~~  110 (461)
                      +|++|+...++.|..+.
T Consensus        82 ~f~~G~~v~~~~G~~~~   98 (113)
T cd02957          82 VYKNGELIDNIVGFEEL   98 (113)
T ss_pred             EEECCEEEEEEecHHHh
Confidence            99999888888775433

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.68  E-value=5.7e-16  Score=121.15  Aligned_cols=101  Identities=64%  Similarity=1.180  Sum_probs=92.5

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      +..++.+++.+.+.+.+.+++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++++.+++++++|.++|++++|++
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~   81 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA   81 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence            57889999999877777789999999999999999999999999998889999999999999999999999999999998


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHH
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      +.   .....|.|..+.++|.+|+
T Consensus        82 ~~---~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          82 GK---NSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CC---cceeecCCCCCHHHHHHHh
Confidence            73   2567899999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.67  E-value=4.5e-16  Score=150.05  Aligned_cols=107  Identities=29%  Similarity=0.638  Sum_probs=93.7

Q ss_pred             CCCCceEcCccchhHHHh--cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecC-CchhhHh-hcCCCC
Q psy17502         14 SYSDVIKLTTSNFDDKVI--KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNAD-EEKSLSS-SHGVTG   88 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~--~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~-~~~~l~~-~~~i~~   88 (461)
                      ++..|+.|+.++|++++.  +.+++++|.||+|||++|+.+.|.|+++++++.+. +.|++|||+ ++.++|+ +|+|.+
T Consensus       343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~  422 (457)
T PLN02309        343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS  422 (457)
T ss_pred             CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence            456899999999999442  47789999999999999999999999999999764 999999999 8889996 699999


Q ss_pred             ccEEEEEcCCC-CCccccC-CcchhHHHHHHHHH
Q psy17502         89 FPTVKIFSDKR-NPTPYQG-ARTADAIIDVALEA  120 (461)
Q Consensus        89 ~P~l~~~~~g~-~~~~y~g-~~~~~~i~~~i~~~  120 (461)
                      +||+++|.+|. ....|.| .++.+.|..|+...
T Consensus       423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            99999998664 5678975 79999999999863

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.66  E-value=8.2e-16  Score=119.69  Aligned_cols=98  Identities=35%  Similarity=0.745  Sum_probs=87.2

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      .|+.++.++|++.+ ++  .++|.||++||++|+.+.|.|.++++.+++ .+.|+.+|++.++.++++|+|.++|+++++
T Consensus         2 ~v~~l~~~~f~~~~-~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~   78 (101)
T cd02994           2 NVVELTDSNWTLVL-EG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA   78 (101)
T ss_pred             ceEEcChhhHHHHh-CC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence            47889999999865 33  378999999999999999999999998764 699999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~  244 (461)
                      ++|     ....|.|..+.++|.+|+.
T Consensus        79 ~~g-----~~~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          79 KDG-----VFRRYQGPRDKEDLISFIE  100 (101)
T ss_pred             CCC-----CEEEecCCCCHHHHHHHHh
Confidence            887     3467999999999999985

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.66  E-value=3e-16  Score=123.85  Aligned_cols=90  Identities=21%  Similarity=0.303  Sum_probs=80.5

Q ss_pred             CceEcCc-cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         17 DVIKLTT-SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        17 ~v~~l~~-~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      .+..+++ ++|.+ .++++++++|+||+|||++|+.+.|.++++++++.+ +.|++||+++.++++++|+|..+||+++|
T Consensus         5 ~v~~i~~~~~~~~-~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f   82 (113)
T cd02989           5 KYREVSDEKEFFE-IVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILF   82 (113)
T ss_pred             CeEEeCCHHHHHH-HHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence            4677777 88998 778889999999999999999999999999998865 89999999999999999999999999999


Q ss_pred             cCCCCCccccCCc
Q psy17502         96 SDKRNPTPYQGAR  108 (461)
Q Consensus        96 ~~g~~~~~y~g~~  108 (461)
                      ++|+.+.++.|..
T Consensus        83 k~G~~v~~~~g~~   95 (113)
T cd02989          83 KNGKTVDRIVGFE   95 (113)
T ss_pred             ECCEEEEEEECcc
Confidence            9997776665543

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.66  E-value=5.7e-16  Score=119.36  Aligned_cols=91  Identities=25%  Similarity=0.483  Sum_probs=84.4

Q ss_pred             hHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccC
Q psy17502         27 DDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQG  106 (461)
Q Consensus        27 ~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g  106 (461)
                      +..+.+.+++++++||++||+.|+.+.|.++++++++.+++.++.+|++++++++++++|.++|++++|++|+...++.|
T Consensus         6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g   85 (97)
T cd02949           6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISG   85 (97)
T ss_pred             HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeC
Confidence            34456788899999999999999999999999999998889999999999999999999999999999999988889999


Q ss_pred             CcchhHHHHHH
Q psy17502        107 ARTADAIIDVA  117 (461)
Q Consensus       107 ~~~~~~i~~~i  117 (461)
                      ..+.+++.+|+
T Consensus        86 ~~~~~~~~~~l   96 (97)
T cd02949          86 VKMKSEYREFI   96 (97)
T ss_pred             CccHHHHHHhh
Confidence            99999998886

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>KOG0907|consensus

Probab=99.66  E-value=3.5e-16  Score=120.28  Aligned_cols=84  Identities=25%  Similarity=0.503  Sum_probs=75.9

Q ss_pred             cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchh
Q psy17502         32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTAD  111 (461)
Q Consensus        32 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~  111 (461)
                      ..+++++|.|||+|||+|+.+.|.+.+++.++.+ +.|.+||+++.++++++++|+..||+++|++|+...++.|.... 
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~-   96 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA-   96 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH-
Confidence            3458999999999999999999999999999988 99999999999999999999999999999999999898887665 


Q ss_pred             HHHHHH
Q psy17502        112 AIIDVA  117 (461)
Q Consensus       112 ~i~~~i  117 (461)
                      .+.+.+
T Consensus        97 ~l~~~i  102 (106)
T KOG0907|consen   97 ELEKKI  102 (106)
T ss_pred             HHHHHH
Confidence            444444

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.66  E-value=9.6e-16  Score=123.35  Aligned_cols=105  Identities=15%  Similarity=0.248  Sum_probs=87.8

Q ss_pred             CccchhHHHh-cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE-EEcCCC
Q psy17502         22 TTSNFDDKVI-KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK-IFSDKR   99 (461)
Q Consensus        22 ~~~~f~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~-~~~~g~   99 (461)
                      +..+|++.+. .++++++|.|||+||++|+.+.|.++++++++++.+.|++||+++++++++.|+|++.|+++ +|++|+
T Consensus        10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~   89 (142)
T PLN00410         10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH   89 (142)
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence            3577888444 45779999999999999999999999999999888999999999999999999999877666 888887


Q ss_pred             -CCccccC--------CcchhHHHHHHHHHHhhhhc
Q psy17502        100 -NPTPYQG--------ARTADAIIDVALEAIRQKVK  126 (461)
Q Consensus       100 -~~~~y~g--------~~~~~~i~~~i~~~~~~~~~  126 (461)
                       ...+..|        ..+.+++.+-+....+...+
T Consensus        90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~  125 (142)
T PLN00410         90 IMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK  125 (142)
T ss_pred             EEEEEecccccccccccCCHHHHHHHHHHHHHHHhc
Confidence             5666677        56777888877777665544

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.65  E-value=1.3e-15  Score=125.30  Aligned_cols=99  Identities=17%  Similarity=0.299  Sum_probs=87.1

Q ss_pred             ccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc--hhhHhhcCCCCccEEEEEc-CCC
Q psy17502         23 TSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE--KSLSSSHGVTGFPTVKIFS-DKR   99 (461)
Q Consensus        23 ~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~P~l~~~~-~g~   99 (461)
                      ...|++ ++..+++++|+||++||++|+.+.|.+.++++++.+++.|+.||++..  ..++++|+|.++|++++|. +|+
T Consensus        10 ~~~~~~-a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~   88 (142)
T cd02950          10 STPPEV-ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN   88 (142)
T ss_pred             cCCHHH-HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence            456676 778889999999999999999999999999999987778888887654  5899999999999999996 788


Q ss_pred             CCccccCCcchhHHHHHHHHHHh
Q psy17502        100 NPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus       100 ~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      ...++.|..+.+.|..++...+.
T Consensus        89 ~v~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          89 EEGQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHHc
Confidence            88889999999999999988774

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.64  E-value=9.5e-16  Score=118.43  Aligned_cols=93  Identities=22%  Similarity=0.452  Sum_probs=79.8

Q ss_pred             ccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502         23 TSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN  100 (461)
Q Consensus        23 ~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~  100 (461)
                      .++|++ ++...  ++++|.||++||++|+.+.|.++++++++...+.++.+|+++.++++++|+|.++||+++|.+|+.
T Consensus         2 ~~~~~~-~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~   80 (97)
T cd02984           2 EEEFEE-LLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI   80 (97)
T ss_pred             HHHHHH-HHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence            467888 55555  899999999999999999999999999986679999999999999999999999999999999877


Q ss_pred             CccccCCcchhHHHHHH
Q psy17502        101 PTPYQGARTADAIIDVA  117 (461)
Q Consensus       101 ~~~y~g~~~~~~i~~~i  117 (461)
                      ..++.|. ..+.|.+.+
T Consensus        81 ~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          81 VDRVSGA-DPKELAKKV   96 (97)
T ss_pred             EEEEeCC-CHHHHHHhh
Confidence            7777775 445555443

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.64  E-value=2e-15  Score=118.98  Aligned_cols=102  Identities=31%  Similarity=0.636  Sum_probs=88.2

Q ss_pred             ceeEcChhhhhhhhh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc-cHhhhh-hcCcccccE
Q psy17502        139 AVVELTDSNFEKLVY--NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV-HQRIAG-EFNIRGYPT  213 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~-~~~l~~-~~~i~~~P~  213 (461)
                      .|+.++.++|+..+.  +++++++|.||++||++|+.+.+.|.++++.+++ .+.++.+|++. +..++. .+++.++|+
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt   81 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT   81 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence            477899999998763  3578999999999999999999999999999986 49999999987 577786 499999999


Q ss_pred             EEEEcCCCCCCcCcccccCC-CCHHHHHHHH
Q psy17502        214 IKFFSPGSRSASDAQEYNGG-RTSQDIVTWA  243 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~-~~~~~i~~fi  243 (461)
                      +++|+++++   ....|+|. ++.++|..||
T Consensus        82 i~~f~~~~~---~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          82 ILFFPKNSR---QPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEcCCCC---CceeccCCCCCHHHHHhhC
Confidence            999998743   56789995 8999999885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PTZ00051 thioredoxin; Provisional

Probab=99.64  E-value=1.2e-15  Score=118.14  Aligned_cols=93  Identities=26%  Similarity=0.543  Sum_probs=80.5

Q ss_pred             ceEcCc-cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         18 VIKLTT-SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        18 v~~l~~-~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      |.+++. ++|.+ +++.+++++|+||++||++|+.+.|.++++++++.+ +.|+.||++++++++++|+|.++|++++|+
T Consensus         2 v~~i~~~~~~~~-~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   79 (98)
T PTZ00051          2 VHIVTSQAEFES-TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFK   79 (98)
T ss_pred             eEEecCHHHHHH-HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence            344554 56666 788889999999999999999999999999998764 899999999999999999999999999999


Q ss_pred             CCCCCccccCCcchhHH
Q psy17502         97 DKRNPTPYQGARTADAI  113 (461)
Q Consensus        97 ~g~~~~~y~g~~~~~~i  113 (461)
                      +|+....+.|. ..++|
T Consensus        80 ~g~~~~~~~G~-~~~~~   95 (98)
T PTZ00051         80 NGSVVDTLLGA-NDEAL   95 (98)
T ss_pred             CCeEEEEEeCC-CHHHh
Confidence            99888888885 44444

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.63  E-value=2.7e-15  Score=131.70  Aligned_cols=110  Identities=39%  Similarity=0.823  Sum_probs=95.9

Q ss_pred             CCceeEcChhhhhhhhhcC----CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCccccc
Q psy17502        137 SKAVVELTDSNFEKLVYNS----DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYP  212 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~----~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P  212 (461)
                      ...++.++.++|++.+...    +.+++|.||++||++|+.+.|.|+++++.+++.+.|+.+|++.+++++++|+|.++|
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P  108 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP  108 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence            4568999999999876432    578999999999999999999999999999988999999999999999999999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCC
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTEN  250 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~  250 (461)
                      ++++|++|    .....+.|.++.++|.+|+.++....
T Consensus       109 Tl~~f~~G----~~v~~~~G~~s~e~L~~fi~~~~~~~  142 (224)
T PTZ00443        109 TLLLFDKG----KMYQYEGGDRSTEKLAAFALGDFKKA  142 (224)
T ss_pred             EEEEEECC----EEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence            99999987    23334567899999999999887433

>PRK09381 trxA thioredoxin; Provisional

Probab=99.62  E-value=4.8e-15  Score=117.06  Aligned_cols=106  Identities=28%  Similarity=0.571  Sum_probs=95.4

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ..++.++.++|.+.+.+.+.+++|.||++||++|..+.+.|+++++.+.+.+.|+.+|++....++++|++.++|++++|
T Consensus         3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   82 (109)
T PRK09381          3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   82 (109)
T ss_pred             CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence            45788899999987777788999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|    .....+.|..+.+.|..||..+.
T Consensus        83 ~~G----~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         83 KNG----EVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             eCC----eEEEEecCCCCHHHHHHHHHHhc
Confidence            887    35567789999999999997653

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.62  E-value=3.6e-15  Score=116.85  Aligned_cols=102  Identities=42%  Similarity=0.863  Sum_probs=90.0

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      +|..++.++|++.+.+.+++++|.||++||++|+.+.+.|.++++.+++  .+.|+.+||+.+ +++..+++.++|++++
T Consensus         1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~   79 (104)
T cd02995           1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF   79 (104)
T ss_pred             CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence            3678999999998777778999999999999999999999999999876  599999999876 5788899999999999


Q ss_pred             EcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        217 FSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      |++|.+  .....|.|..+.++|.+||
T Consensus        80 ~~~~~~--~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          80 FPAGDK--SNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EcCCCc--CCceEccCCcCHHHHHhhC
Confidence            998842  2567899999999999986

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.62  E-value=3.6e-15  Score=116.37  Aligned_cols=98  Identities=41%  Similarity=0.905  Sum_probs=87.2

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      ++.++.++|++.+ .++ +++|.||++||++|+.+.+.|.++++.+++   .+.|+.+||+.+..++++++|.++|++++
T Consensus         2 ~~~l~~~~f~~~~-~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   79 (102)
T cd03005           2 VLELTEDNFDHHI-AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL   79 (102)
T ss_pred             eeECCHHHHHHHh-hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence            5678999999886 333 599999999999999999999999999976   79999999999999999999999999999


Q ss_pred             EcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        217 FSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      |++|    .....|.|..+.++|.+||
T Consensus        80 ~~~g----~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          80 FKDG----EKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EeCC----CeeeEeeCCCCHHHHHhhC
Confidence            9887    3566799999999998875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.62  E-value=3.3e-15  Score=117.94  Aligned_cols=100  Identities=25%  Similarity=0.425  Sum_probs=87.1

Q ss_pred             EcChhhhhhhhhc--CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        142 ELTDSNFEKLVYN--SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       142 ~l~~~~~~~~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      .++.+++.+.+..  .+++++|.||++||++|+.+.|.|.++++.+++ .+.|+.+|++.++.++++++|.++|++++|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~   87 (111)
T cd02963           8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII   87 (111)
T ss_pred             eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence            4577778765543  578999999999999999999999999999975 5999999999999999999999999999999


Q ss_pred             CCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        219 PGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      +|    .....+.|..+.+.|.+||.+
T Consensus        88 ~g----~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          88 NG----QVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             CC----EEEEEecCCCCHHHHHHHHhc
Confidence            77    355567899999999999864

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.61  E-value=5.1e-15  Score=114.06  Aligned_cols=93  Identities=26%  Similarity=0.510  Sum_probs=82.7

Q ss_pred             hhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCc
Q psy17502        147 NFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSAS  225 (461)
Q Consensus       147 ~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~  225 (461)
                      +|++.+.++ +++++|.||++||++|+.+.+.+.+++..+.+.+.|+.+|++.+..++++|+|.++|++++|++|    .
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g----~   77 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAG----Q   77 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCC----E
Confidence            456666444 67999999999999999999999999999988899999999999999999999999999999977    3


Q ss_pred             CcccccCCCCHHHHHHHH
Q psy17502        226 DAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       226 ~~~~y~g~~~~~~i~~fi  243 (461)
                      ....+.|..+.+.|..|+
T Consensus        78 ~~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          78 PVDGFQGAQPEEQLRQML   95 (96)
T ss_pred             EeeeecCCCCHHHHHHHh
Confidence            456789999999999887

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.3e-14  Score=128.04  Aligned_cols=109  Identities=31%  Similarity=0.620  Sum_probs=98.8

Q ss_pred             CCCCceeEcChhhhhhhhhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCccccc
Q psy17502        135 GSSKAVVELTDSNFEKLVYNS--DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYP  212 (461)
Q Consensus       135 ~~~~~v~~l~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P  212 (461)
                      ...+.|+++|+.+|+..+..+  ..|++|.||+|||++|+.+.|.+++++..++|.+.+++|||+.++.++.+|||++.|
T Consensus        20 ~~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIP   99 (304)
T COG3118          20 MAAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIP   99 (304)
T ss_pred             cccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCC
Confidence            344558899999999887543  459999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++++|.+|    .....|.|....+.|.+|+.+..
T Consensus       100 tV~af~dG----qpVdgF~G~qPesqlr~~ld~~~  130 (304)
T COG3118         100 TVYAFKDG----QPVDGFQGAQPESQLRQFLDKVL  130 (304)
T ss_pred             eEEEeeCC----cCccccCCCCcHHHHHHHHHHhc
Confidence            99999999    46777999999999999998875

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.59  E-value=1.6e-14  Score=112.67  Aligned_cols=99  Identities=51%  Similarity=0.942  Sum_probs=89.1

Q ss_pred             cChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCcccHhhhhhcCcccccEEEEEcCC
Q psy17502        143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG  220 (461)
Q Consensus       143 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~  220 (461)
                      |+.++|.+.+ .++++++|.|+++||+.|+.+.+.|.+++..+++  .+.++.+|++.+..++++|++.++|++++|+++
T Consensus         1 l~~~~~~~~~-~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~   79 (102)
T TIGR01126         1 LTASNFDDIV-LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG   79 (102)
T ss_pred             CchhhHHHHh-ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence            4667888876 4788999999999999999999999999999986  699999999999999999999999999999988


Q ss_pred             CCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        221 SRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       221 ~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      .    ....|.|..+.+.|..||.++
T Consensus        80 ~----~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        80 K----KPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             C----cceeecCCCCHHHHHHHHHhc
Confidence            3    367899999999999999764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.58  E-value=1.2e-14  Score=114.87  Aligned_cols=96  Identities=19%  Similarity=0.226  Sum_probs=82.6

Q ss_pred             cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCc-
Q psy17502         24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPT-  102 (461)
Q Consensus        24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~-  102 (461)
                      ++|.+ .+.....++|.||++||++|+.+.|.+++++..+ +.+.+..||.+++++++++|+|.++||+++|++|+... 
T Consensus        13 ~~~~~-~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~   90 (113)
T cd02975          13 EEFFK-EMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGG   90 (113)
T ss_pred             HHHHH-HhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecce
Confidence            34555 4566667899999999999999999999999886 66999999999999999999999999999999764433 


Q ss_pred             -cccCCcchhHHHHHHHHHH
Q psy17502        103 -PYQGARTADAIIDVALEAI  121 (461)
Q Consensus       103 -~y~g~~~~~~i~~~i~~~~  121 (461)
                       +|.|..+..++.+|+...+
T Consensus        91 ~~~~G~~~~~el~~~i~~i~  110 (113)
T cd02975          91 IRYYGLPAGYEFASLIEDIV  110 (113)
T ss_pred             EEEEecCchHHHHHHHHHHH
Confidence             7889999999999998764

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.58  E-value=8.8e-15  Score=112.87  Aligned_cols=84  Identities=25%  Similarity=0.593  Sum_probs=76.5

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-ccHhhhhhcCcccccEEEEEcCCCCCCcCcccccC
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG  232 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g  232 (461)
                      ..+++++|.||++||++|+.+.|.|+++++.++ .+.|+.+|++ .++.++++|+|.++||+++|+++     ....|.|
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-----~~~~~~G   89 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-----PRVRYNG   89 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-----ceeEecC
Confidence            467899999999999999999999999999986 4888999988 78999999999999999999977     4578999


Q ss_pred             CCCHHHHHHHH
Q psy17502        233 GRTSQDIVTWA  243 (461)
Q Consensus       233 ~~~~~~i~~fi  243 (461)
                      .++.+.|.+||
T Consensus        90 ~~~~~~l~~f~  100 (100)
T cd02999          90 TRTLDSLAAFY  100 (100)
T ss_pred             CCCHHHHHhhC
Confidence            99999999885

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.58  E-value=9.8e-15  Score=111.76  Aligned_cols=78  Identities=13%  Similarity=0.227  Sum_probs=69.9

Q ss_pred             cchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCC
Q psy17502         24 SNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNP  101 (461)
Q Consensus        24 ~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~  101 (461)
                      +.+++.+.+ ++++++|.|+|+||++|+.+.|.++++|+++++.+.|++||.++.+++++.|+|+..||+++|++|+..
T Consensus         3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~   81 (114)
T cd02986           3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM   81 (114)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence            456774443 478999999999999999999999999999977799999999999999999999999999999988655

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.58  E-value=1.8e-14  Score=113.08  Aligned_cols=101  Identities=48%  Similarity=0.917  Sum_probs=89.5

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCcc-cHhhhhhcCcccccEEEE
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATV-HQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~-~~~l~~~~~i~~~P~i~~  216 (461)
                      +..++.+++++.+.+.+++++|.||++||++|+.+.+.|.++++.++  +.+.++.+|++. +..++++++|.++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            46788889988765566699999999999999999999999999987  469999999999 899999999999999999


Q ss_pred             EcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        217 FSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      |.++.+   ....|.|.++.++|.+||
T Consensus        82 ~~~~~~---~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGST---EPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCC---CccccCCccCHHHHHhhC
Confidence            997742   566799999999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.57  E-value=1.3e-14  Score=110.78  Aligned_cols=92  Identities=28%  Similarity=0.556  Sum_probs=83.4

Q ss_pred             cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCcc
Q psy17502         24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTP  103 (461)
Q Consensus        24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~  103 (461)
                      ++|.+ .++.+++++|+||++||++|+.+.+.+.++++. .+.+.++.+|+++++++++++++.++|++++|.+|+....
T Consensus         1 ~~~~~-~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~   78 (93)
T cd02947           1 EEFEE-LIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDR   78 (93)
T ss_pred             CchHH-HHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEE
Confidence            35676 677779999999999999999999999999988 5679999999999999999999999999999999887888


Q ss_pred             ccCCcchhHHHHHH
Q psy17502        104 YQGARTADAIIDVA  117 (461)
Q Consensus       104 y~g~~~~~~i~~~i  117 (461)
                      +.|..+.+.|..|+
T Consensus        79 ~~g~~~~~~l~~~i   92 (93)
T cd02947          79 VVGADPKEELEEFL   92 (93)
T ss_pred             EecCCCHHHHHHHh
Confidence            99988888888876

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PHA02278 thioredoxin-like protein

Probab=99.57  E-value=1.9e-14  Score=110.77  Aligned_cols=93  Identities=13%  Similarity=0.185  Sum_probs=80.3

Q ss_pred             hhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc----HhhhhhcCcccccEEEEEcCC
Q psy17502        145 DSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH----QRIAGEFNIRGYPTIKFFSPG  220 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~----~~l~~~~~i~~~P~i~~~~~~  220 (461)
                      .++|.+.+ +++.+++|.|||+||++|+.+.|.++++++.+...+.|+.+|++.+    ++++++|+|.+.||+++|++|
T Consensus         4 ~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G   82 (103)
T PHA02278          4 LVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG   82 (103)
T ss_pred             HHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence            46677765 6789999999999999999999999999988666678899998875    689999999999999999998


Q ss_pred             CCCCcCcccccCCCCHHHHHHH
Q psy17502        221 SRSASDAQEYNGGRTSQDIVTW  242 (461)
Q Consensus       221 ~~~~~~~~~y~g~~~~~~i~~f  242 (461)
                          ....+..|..+.+.|.+|
T Consensus        83 ----~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         83 ----QLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             ----EEEEEEeCCCCHHHHHhh
Confidence                466778898888888775

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.57  E-value=2.5e-14  Score=112.01  Aligned_cols=99  Identities=46%  Similarity=0.937  Sum_probs=88.0

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCcc--cHhhhhhcCcccccEEE
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATV--HQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~--~~~l~~~~~i~~~P~i~  215 (461)
                      ++.++..++++.+ +.+++++|.||++||++|+.+.+.+.++++.+.  +.+.++.+|++.  +..++++++|.++|+++
T Consensus         2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~   80 (104)
T cd02997           2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK   80 (104)
T ss_pred             eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence            5678888998876 556699999999999999999999999999887  668999999988  89999999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      +|++|    .....|.|..+.+.+.+|+
T Consensus        81 ~~~~g----~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          81 YFENG----KFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEeCC----CeeEEeCCCCCHHHHHhhC
Confidence            99987    3567899999999998885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.56  E-value=3e-13  Score=120.18  Aligned_cols=189  Identities=17%  Similarity=0.211  Sum_probs=132.2

Q ss_pred             CCeEEEEEeC---CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCc-ccc
Q psy17502        156 DDIWLVEFFA---PWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDA-QEY  230 (461)
Q Consensus       156 ~~~~~v~f~~---~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~-~~y  230 (461)
                      +...++.|++   +||++|+.+.+.+++++..+.. .+.++.+|.+++++++++|+|.++||+++|++|.    .. .+|
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~----~~~~~~   94 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK----DGGIRY   94 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe----eeEEEE
Confidence            4556777888   9999999999999999998843 2556667766899999999999999999999882    33 478


Q ss_pred             cCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHh-cCCCeEEEEE-eCCccccChhhHHHHHHHHHHHHHhccCc
Q psy17502        231 NGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEAC-EDHPLCIVAV-LPHILDCQSSCRNNYLEILQKLGDKYKQK  308 (461)
Q Consensus       231 ~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~-~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~va~~~~~~  308 (461)
                      .|..+.+.+.+||..... ..+  .-..+. ......+. ...++.++.| .++     ....+.....+++++.++. .
T Consensus        95 ~G~~~~~~l~~~i~~~~~-~~~--~~~~L~-~~~~~~l~~~~~pv~I~~F~a~~-----C~~C~~~~~~l~~l~~~~~-~  164 (215)
T TIGR02187        95 TGIPAGYEFAALIEDIVR-VSQ--GEPGLS-EKTVELLQSLDEPVRIEVFVTPT-----CPYCPYAVLMAHKFALAND-K  164 (215)
T ss_pred             eecCCHHHHHHHHHHHHH-hcC--CCCCCC-HHHHHHHHhcCCCcEEEEEECCC-----CCCcHHHHHHHHHHHHhcC-c
Confidence            898888899999876641 111  112332 32222222 3455555534 343     3334455577888887753 3


Q ss_pred             ceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHH
Q psy17502        309 VWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRD  365 (461)
Q Consensus       309 ~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~  365 (461)
                      + .+..+|.+..+++++.+|+.  ..|++++.+.. .+   +.|..+.+.+.+|+++
T Consensus       165 i-~~~~vD~~~~~~~~~~~~V~--~vPtl~i~~~~-~~---~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       165 I-LGEMIEANENPDLAEKYGVM--SVPKIVINKGV-EE---FVGAYPEEQFLEYILS  214 (215)
T ss_pred             e-EEEEEeCCCCHHHHHHhCCc--cCCEEEEecCC-EE---EECCCCHHHHHHHHHh
Confidence            3 45566777788999999998  68999987432 22   4566778889888864

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK10996 thioredoxin 2; Provisional

Probab=99.56  E-value=5.1e-14  Score=115.67  Aligned_cols=103  Identities=31%  Similarity=0.654  Sum_probs=92.5

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      .++.++.+++++.+ +++++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++.+++++++|+|.++|++++|+
T Consensus        36 ~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~  114 (139)
T PRK10996         36 EVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFK  114 (139)
T ss_pred             CCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEE
Confidence            46678888998865 66899999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        219 PGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|    .....+.|..+.+.|.+|+.+.
T Consensus       115 ~G----~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        115 NG----QVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             CC----EEEEEEcCCCCHHHHHHHHHHh
Confidence            77    4566788999999999999764

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.56  E-value=2.1e-14  Score=114.54  Aligned_cols=99  Identities=16%  Similarity=0.221  Sum_probs=81.7

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-----------hhHhhc
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-----------SLSSSH   84 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-----------~l~~~~   84 (461)
                      ..+..++.++|.+ .+++++.++|+|+++||++|+.+.|.+.+++++  .++.+..||.+.++           ++.+++
T Consensus         6 ~~~~~it~~~~~~-~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~   82 (122)
T TIGR01295         6 KGLEVTTVVRALE-ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRF   82 (122)
T ss_pred             ccceecCHHHHHH-HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence            4567888899999 788888999999999999999999999999998  34667778877543           455666


Q ss_pred             C----CCCccEEEEEcCCCCCccccC-CcchhHHHHHH
Q psy17502         85 G----VTGFPTVKIFSDKRNPTPYQG-ARTADAIIDVA  117 (461)
Q Consensus        85 ~----i~~~P~l~~~~~g~~~~~y~g-~~~~~~i~~~i  117 (461)
                      +    |.++||+++|++|+.+.+..| ..+.++|.+|+
T Consensus        83 ~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295        83 GIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA  120 (122)
T ss_pred             CCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence            5    556999999999988888888 55688888775

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.56  E-value=1.5e-14  Score=111.96  Aligned_cols=75  Identities=15%  Similarity=0.284  Sum_probs=68.5

Q ss_pred             hhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCC
Q psy17502        146 SNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG  220 (461)
Q Consensus       146 ~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~  220 (461)
                      +++++.+.. .+.+++|.|+++||++|+.+.|.++++|..+.+.+.|+.||++++++++++|+|.+.||+++|++|
T Consensus         3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G   78 (114)
T cd02954           3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN   78 (114)
T ss_pred             HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence            456666543 577999999999999999999999999999988899999999999999999999999999999998

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.54  E-value=2e-14  Score=122.20  Aligned_cols=89  Identities=18%  Similarity=0.302  Sum_probs=77.4

Q ss_pred             CCceEcCc-cchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         16 SDVIKLTT-SNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        16 ~~v~~l~~-~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      ..+.+++. ++|.+.+.+.+  .+++|.||++||++|+.+.|.+.++|.++. .+.|++||+++. +++.+|+|..+||+
T Consensus        62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPTl  139 (175)
T cd02987          62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPAL  139 (175)
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCEE
Confidence            56889999 99999443333  399999999999999999999999999986 499999999987 89999999999999


Q ss_pred             EEEcCCCCCccccC
Q psy17502         93 KIFSDKRNPTPYQG  106 (461)
Q Consensus        93 ~~~~~g~~~~~y~g  106 (461)
                      ++|++|+.+.++.|
T Consensus       140 llyk~G~~v~~~vG  153 (175)
T cd02987         140 LVYKGGELIGNFVR  153 (175)
T ss_pred             EEEECCEEEEEEec
Confidence            99999976655544

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.54  E-value=5.4e-13  Score=116.18  Aligned_cols=173  Identities=23%  Similarity=0.303  Sum_probs=139.6

Q ss_pred             hhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCC-CCCccccCC-cchhHHHHHHHHHHhhhhcCC
Q psy17502         51 SFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDK-RNPTPYQGA-RTADAIIDVALEAIRQKVKGG  128 (461)
Q Consensus        51 ~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g-~~~~~y~g~-~~~~~i~~~i~~~~~~~~~~~  128 (461)
                      .....|.++|+.+.+.+.|+.+.   ++++++++++.. |++++|+.+ +....|.|. .+.+.|..||.....      
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~------   76 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF------   76 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS------
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc------
Confidence            35678999999999889999988   677999999999 999999963 456889998 899999999999863      


Q ss_pred             CCCCCCCCCCceeEcChhhhhhhhhcCCCe-EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcC
Q psy17502        129 KSGGRKGSSKAVVELTDSNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFN  207 (461)
Q Consensus       129 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~  207 (461)
                               +.+..++.+++..+. ..+.+ +++.|..........+...+..+|+.+++.+.|+.+|++..+.+++.+|
T Consensus        77 ---------P~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~  146 (184)
T PF13848_consen   77 ---------PLVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFG  146 (184)
T ss_dssp             ---------TSCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTT
T ss_pred             ---------ccccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcC
Confidence                     347899999999875 55544 6667765544555677788999999999999999999998888999999


Q ss_pred             cc--cccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        208 IR--GYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       208 i~--~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      +.  ..|+++++.....  .....+.|..+.++|.+|+.+
T Consensus       147 i~~~~~P~~vi~~~~~~--~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  147 IDEDDLPALVIFDSNKG--KYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             TTTSSSSEEEEEETTTS--EEEE--SSCGCHHHHHHHHHH
T ss_pred             CCCccCCEEEEEECCCC--cEEcCCCCCCCHHHHHHHhcC
Confidence            98  7899999985421  112224788999999999863

...

>TIGR01068 thioredoxin thioredoxin

Probab=99.53  E-value=1e-13  Score=107.85  Aligned_cols=99  Identities=34%  Similarity=0.637  Sum_probs=87.3

Q ss_pred             ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCC
Q psy17502        144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRS  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~  223 (461)
                      +.+++.+.+.+.+.+++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+..++++|++.++|++++|++|   
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g---   78 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG---   78 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC---
Confidence            56677777665567999999999999999999999999999987899999999999999999999999999999877   


Q ss_pred             CcCcccccCCCCHHHHHHHHHhh
Q psy17502        224 ASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       224 ~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                       .....+.|..+.+.+..|+.++
T Consensus        79 -~~~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        79 -KEVDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             -cEeeeecCCCCHHHHHHHHHhh
Confidence             3456678888999999999764

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.52  E-value=1.8e-13  Score=108.39  Aligned_cols=101  Identities=36%  Similarity=0.827  Sum_probs=85.2

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcc--cHhhhhhcCcccccE
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATV--HQRIAGEFNIRGYPT  213 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~--~~~l~~~~~i~~~P~  213 (461)
                      +++.++..+|.+.+.+.+++++|.||++||++|+.+.+.|.+++..+++   .+.|+.+||+.  +.++++++++.++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            4788999999998877778999999999999999999999999998863   59999999864  678999999999999


Q ss_pred             EEEEcCCCCCCcCcccccCC-CCHHHH
Q psy17502        214 IKFFSPGSRSASDAQEYNGG-RTSQDI  239 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~-~~~~~i  239 (461)
                      +++|+++.+.......|+|. +..+.+
T Consensus        82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~  108 (114)
T cd02992          82 LRYFPPFSKEATDGLKQEGPERDVNEL  108 (114)
T ss_pred             EEEECCCCccCCCCCcccCCccCHHHH
Confidence            99999886543345677776 666655

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.52  E-value=8e-14  Score=112.93  Aligned_cols=99  Identities=16%  Similarity=0.276  Sum_probs=83.0

Q ss_pred             chhHHHhcCC-CeEEEEEECCCCHhHHhhHHHHH---HHHHHcCCceEEEEEecCCc-------------hhhHhhcCCC
Q psy17502         25 NFDDKVIKSD-EVWIVEYYAPWCGHCQSFKDEYM---KLATALKGVVKVGAVNADEE-------------KSLSSSHGVT   87 (461)
Q Consensus        25 ~f~~~~~~~~-~~~lv~f~~~~c~~C~~~~~~~~---~~a~~~~~~v~~~~vd~~~~-------------~~l~~~~~i~   87 (461)
                      .+.+ .++++ ++++|.||++||++|+.+.|.+.   .+.+.+.+.+.++.||.+.+             .+++.+|+|.
T Consensus         5 ~~~~-a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~   83 (125)
T cd02951           5 DLAE-AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR   83 (125)
T ss_pred             HHHH-HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence            3445 67788 99999999999999999999884   56666666788999998864             6899999999


Q ss_pred             CccEEEEEcC--CCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         88 GFPTVKIFSD--KRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        88 ~~P~l~~~~~--g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      ++||++++..  |+...++.|..+.+.+.+++.......
T Consensus        84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~  122 (125)
T cd02951          84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA  122 (125)
T ss_pred             cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence            9999999995  577788999999999999998876443

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.51  E-value=1.5e-13  Score=106.98  Aligned_cols=95  Identities=15%  Similarity=0.236  Sum_probs=78.4

Q ss_pred             ChhhhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH---hhhhhcCcccccEEEEEcC
Q psy17502        144 TDSNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ---RIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       144 ~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~---~l~~~~~i~~~P~i~~~~~  219 (461)
                      +.+++++.+.+. +++++|.||++||++|+.+.|.+.++++.+ +.+.|+.+|++++.   +++++|+|.++||+++|++
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~   80 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD   80 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence            456777776543 789999999999999999999999999999 67999999988763   7999999999999999988


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHH
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~  244 (461)
                      |    .....+.|. ....|.+-+.
T Consensus        81 G----~~v~~~~G~-~~~~l~~~~~  100 (103)
T cd02985          81 G----EKIHEEEGI-GPDELIGDVL  100 (103)
T ss_pred             C----eEEEEEeCC-CHHHHHHHHH
Confidence            8    356677784 4566665554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.51  E-value=1.3e-13  Score=107.17  Aligned_cols=98  Identities=50%  Similarity=0.959  Sum_probs=86.9

Q ss_pred             EcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHh--cCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL--EGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~--~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      .++.+++.+.+ .+.++++|.|+++||++|+.+.+.|.++++.+  .+.+.|+.+|++.+..++++|+|.++|++++|++
T Consensus         2 ~l~~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~   80 (101)
T cd02961           2 ELTDDNFDELV-KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN   80 (101)
T ss_pred             cccHHHHHHHH-hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence            46788898876 44559999999999999999999999999999  5789999999999999999999999999999997


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHH
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      ++   .....|.|..+.++|.+|+
T Consensus        81 ~~---~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          81 GS---KEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CC---cccccCCCCcCHHHHHhhC
Confidence            74   2677899999999998875

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.51  E-value=1.1e-13  Score=108.05  Aligned_cols=87  Identities=15%  Similarity=0.230  Sum_probs=77.8

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCC--CccEEEEEcC--CCCCccccCCcc
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVT--GFPTVKIFSD--KRNPTPYQGART  109 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~P~l~~~~~--g~~~~~y~g~~~  109 (461)
                      +.++++.|+++||++|+.+.|.+.++|+++++++.|+.||+++.+++++.+|+.  ++|+++++++  |+......|..+
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~   91 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT   91 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence            679999999999999999999999999999999999999999999999999999  9999999997  545443345568


Q ss_pred             hhHHHHHHHHH
Q psy17502        110 ADAIIDVALEA  120 (461)
Q Consensus       110 ~~~i~~~i~~~  120 (461)
                      .+.|.+|+...
T Consensus        92 ~~~l~~fi~~~  102 (103)
T cd02982          92 AESLEEFVEDF  102 (103)
T ss_pred             HHHHHHHHHhh
Confidence            99999999764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.50  E-value=2.6e-13  Score=105.99  Aligned_cols=93  Identities=49%  Similarity=1.007  Sum_probs=81.2

Q ss_pred             hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCC
Q psy17502        146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSR  222 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~  222 (461)
                      ++|++.  ..+.+++|.||++||++|+.+.+.|.++++.+++   .+.++.+|++....++++++|.++|++++|+++  
T Consensus         7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~--   82 (104)
T cd03000           7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD--   82 (104)
T ss_pred             hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC--
Confidence            566663  3467999999999999999999999999999853   499999999999999999999999999999765  


Q ss_pred             CCcCcccccCCCCHHHHHHHHHh
Q psy17502        223 SASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       223 ~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                         ....|.|..+.++|.+|+.+
T Consensus        83 ---~~~~~~G~~~~~~l~~~~~~  102 (104)
T cd03000          83 ---LAYNYRGPRTKDDIVEFANR  102 (104)
T ss_pred             ---CceeecCCCCHHHHHHHHHh
Confidence               45678999999999999975

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.49  E-value=2.7e-13  Score=104.14  Aligned_cols=96  Identities=13%  Similarity=0.179  Sum_probs=85.4

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPW--CGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ...++..+|++.+ +.+.+++|.|+++|  |++|..+.|.+.++|+.+.+.+.|+.+|++.+++++.+|+|.+.||+++|
T Consensus        12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~f   90 (111)
T cd02965          12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFF   90 (111)
T ss_pred             CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEE
Confidence            5578999999775 77889999999997  99999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHH
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIV  240 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~  240 (461)
                      ++|    .......|..+.+++.
T Consensus        91 kdG----k~v~~~~G~~~~~e~~  109 (111)
T cd02965          91 RDG----RYVGVLAGIRDWDEYV  109 (111)
T ss_pred             ECC----EEEEEEeCccCHHHHh
Confidence            998    4566677877766653

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.49  E-value=2.3e-13  Score=131.39  Aligned_cols=108  Identities=30%  Similarity=0.573  Sum_probs=92.3

Q ss_pred             CCCCceeEcChhhhhhhhh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcccH-hhh-hhcCcc
Q psy17502        135 GSSKAVVELTDSNFEKLVY--NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATVHQ-RIA-GEFNIR  209 (461)
Q Consensus       135 ~~~~~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~~~-~l~-~~~~i~  209 (461)
                      .++..|+.|+.++|++.+.  +.+++++|.||++||++|+.+.|.|+++|+.+++. +.|+.+|++.+. .++ ++|+|.
T Consensus       348 ~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~  427 (463)
T TIGR00424       348 FDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG  427 (463)
T ss_pred             cCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCC
Confidence            3566899999999999863  47789999999999999999999999999999764 899999998753 444 689999


Q ss_pred             cccEEEEEcCCCCCCcCccccc-CCCCHHHHHHHHHh
Q psy17502        210 GYPTIKFFSPGSRSASDAQEYN-GGRTSQDIVTWALN  245 (461)
Q Consensus       210 ~~P~i~~~~~~~~~~~~~~~y~-g~~~~~~i~~fi~~  245 (461)
                      ++||+++|+++..   ....|. |.++.++|+.||..
T Consensus       428 ~~PTii~Fk~g~~---~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       428 SFPTILFFPKHSS---RPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             ccceEEEEECCCC---CceeCCCCCCCHHHHHHHHHh
Confidence            9999999998842   466797 58999999999964

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.48  E-value=2.8e-13  Score=130.87  Aligned_cols=108  Identities=30%  Similarity=0.603  Sum_probs=94.0

Q ss_pred             CCCCceeEcChhhhhhhhh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc-ccHhhhh-hcCcc
Q psy17502        135 GSSKAVVELTDSNFEKLVY--NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT-VHQRIAG-EFNIR  209 (461)
Q Consensus       135 ~~~~~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~-~~~~l~~-~~~i~  209 (461)
                      .++..|+.++.+++++.+.  +.+++++|.||++||++|+.+.+.|.++|+.+.+ .+.|+.+|++ .+..++. +|+|.
T Consensus       342 ~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~  421 (457)
T PLN02309        342 FNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG  421 (457)
T ss_pred             cCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc
Confidence            3556788999999998763  5678999999999999999999999999999975 4999999998 7788886 69999


Q ss_pred             cccEEEEEcCCCCCCcCcccccC-CCCHHHHHHHHHh
Q psy17502        210 GYPTIKFFSPGSRSASDAQEYNG-GRTSQDIVTWALN  245 (461)
Q Consensus       210 ~~P~i~~~~~~~~~~~~~~~y~g-~~~~~~i~~fi~~  245 (461)
                      ++||+++|+++..   ....|.| .++.++|+.||..
T Consensus       422 ~~PTil~f~~g~~---~~v~Y~~~~R~~~~L~~fv~~  455 (457)
T PLN02309        422 SFPTILLFPKNSS---RPIKYPSEKRDVDSLLSFVNS  455 (457)
T ss_pred             eeeEEEEEeCCCC---CeeecCCCCcCHHHHHHHHHH
Confidence            9999999998843   5677985 7999999999975

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.48  E-value=4.2e-13  Score=104.20  Aligned_cols=96  Identities=18%  Similarity=0.384  Sum_probs=80.9

Q ss_pred             cChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCC
Q psy17502        143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGS  221 (461)
Q Consensus       143 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~  221 (461)
                      -+.+++++.+ +++++++|.||++||++|+.+.+.+.+++..+++ .+.|+.+|++ +.+++++|+|.++|++++|++| 
T Consensus         5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g-   81 (102)
T cd02948           5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG-   81 (102)
T ss_pred             cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC-
Confidence            3677888865 6788999999999999999999999999999875 4889999988 7788999999999999999988 


Q ss_pred             CCCcCcccccCCCCHHHHHHHHHh
Q psy17502        222 RSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       222 ~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                         .......|. +.+.+.++|.+
T Consensus        82 ---~~~~~~~G~-~~~~~~~~i~~  101 (102)
T cd02948          82 ---ELVAVIRGA-NAPLLNKTITE  101 (102)
T ss_pred             ---EEEEEEecC-ChHHHHHHHhh
Confidence               345555664 77888888753

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.48  E-value=1.7e-13  Score=118.07  Aligned_cols=88  Identities=13%  Similarity=0.230  Sum_probs=76.4

Q ss_pred             CCceEcCccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ..|.+++.++|...+.+.+  .+++|.||++||++|+.+.|.|.++|.++. .+.|++||+++.   +.+|+++++||++
T Consensus        82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTll  157 (192)
T cd02988          82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTIL  157 (192)
T ss_pred             CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEEE
Confidence            5689999999998565543  489999999999999999999999999986 499999999754   6899999999999


Q ss_pred             EEcCCCCCccccCC
Q psy17502         94 IFSDKRNPTPYQGA  107 (461)
Q Consensus        94 ~~~~g~~~~~y~g~  107 (461)
                      +|++|+.+..+.|.
T Consensus       158 iyk~G~~v~~ivG~  171 (192)
T cd02988         158 VYRNGDIVKQFIGL  171 (192)
T ss_pred             EEECCEEEEEEeCc
Confidence            99999877666653

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.47  E-value=5.8e-13  Score=109.81  Aligned_cols=92  Identities=24%  Similarity=0.504  Sum_probs=79.2

Q ss_pred             CCceeEcChhhhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCccc----
Q psy17502        137 SKAVVELTDSNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRG----  210 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~----  210 (461)
                      ...+..++.++|++.+..+ +.+++|.||++||++|+.+.|.|.++++.+.+ .+.|+.||++++++++++|+|.+    
T Consensus        27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v  106 (152)
T cd02962          27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLS  106 (152)
T ss_pred             CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCc
Confidence            3567889999999876433 56899999999999999999999999999874 59999999999999999999988    


Q ss_pred             --ccEEEEEcCCCCCCcCcccccC
Q psy17502        211 --YPTIKFFSPGSRSASDAQEYNG  232 (461)
Q Consensus       211 --~P~i~~~~~~~~~~~~~~~y~g  232 (461)
                        +||+++|++|    ....++.|
T Consensus       107 ~~~PT~ilf~~G----k~v~r~~G  126 (152)
T cd02962         107 KQLPTIILFQGG----KEVARRPY  126 (152)
T ss_pred             CCCCEEEEEECC----EEEEEEec
Confidence              9999999988    34555554

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>KOG0908|consensus

Probab=99.46  E-value=2.5e-13  Score=115.69  Aligned_cols=98  Identities=23%  Similarity=0.470  Sum_probs=84.6

Q ss_pred             CccchhHHHh-cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502         22 TTSNFDDKVI-KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN  100 (461)
Q Consensus        22 ~~~~f~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~  100 (461)
                      ++.+|...+- ...+.++|.|+|.|||+|+++.|.|..++.++.+ ..|.+||.++.+..+..+||...||+++|++|.+
T Consensus         8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k   86 (288)
T KOG0908|consen    8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK   86 (288)
T ss_pred             CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence            4577777332 2446999999999999999999999999999966 8999999999999999999999999999999999


Q ss_pred             CccccCCcchhHHHHHHHHHH
Q psy17502        101 PTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus       101 ~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +..++|. ++..+.+-+.+++
T Consensus        87 id~~qGA-d~~gLe~kv~~~~  106 (288)
T KOG0908|consen   87 IDQIQGA-DASGLEEKVAKYA  106 (288)
T ss_pred             eeeecCC-CHHHHHHHHHHHh
Confidence            9889885 4556777777765

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.45  E-value=7.1e-13  Score=105.07  Aligned_cols=80  Identities=24%  Similarity=0.410  Sum_probs=72.3

Q ss_pred             ceeEcChhhhhhhhhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        139 AVVELTDSNFEKLVYNS--DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      .+..++.++|.+.+.+.  +.+++|.||++||++|+.+.+.++++|..+. .+.|+.+|++.+ +++++|+|.++|++++
T Consensus         5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~   82 (113)
T cd02957           5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLLV   82 (113)
T ss_pred             eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence            46788889998887555  3899999999999999999999999999985 589999999888 9999999999999999


Q ss_pred             EcCC
Q psy17502        217 FSPG  220 (461)
Q Consensus       217 ~~~~  220 (461)
                      |++|
T Consensus        83 f~~G   86 (113)
T cd02957          83 YKNG   86 (113)
T ss_pred             EECC
Confidence            9998

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.44  E-value=5e-13  Score=99.56  Aligned_cols=80  Identities=20%  Similarity=0.344  Sum_probs=71.8

Q ss_pred             EEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHH
Q psy17502         37 WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDV  116 (461)
Q Consensus        37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~  116 (461)
                      .+..||++||++|+.+.|.+++++++++..+.+..||+++++++++++|+.++|++++  +|+  .++.|..+.+.+.++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~   77 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA   77 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence            4678999999999999999999999998789999999999999999999999999986  554  378899999999988


Q ss_pred             HHHH
Q psy17502        117 ALEA  120 (461)
Q Consensus       117 i~~~  120 (461)
                      +.+.
T Consensus        78 l~~~   81 (82)
T TIGR00411        78 IKKR   81 (82)
T ss_pred             HHhh
Confidence            8753

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.42  E-value=6.1e-13  Score=104.42  Aligned_cols=79  Identities=15%  Similarity=0.296  Sum_probs=67.6

Q ss_pred             CccchhHHHhcC--CCeEEEEEEC-------CCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC-------chhhHhhcC
Q psy17502         22 TTSNFDDKVIKS--DEVWIVEYYA-------PWCGHCQSFKDEYMKLATALKGVVKVGAVNADE-------EKSLSSSHG   85 (461)
Q Consensus        22 ~~~~f~~~~~~~--~~~~lv~f~~-------~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~-------~~~l~~~~~   85 (461)
                      +.++|.+ .+..  +++++|.|||       +||++|+.+.|.+++++.++++++.|++||+++       +.+++.+++
T Consensus         8 ~~~~f~~-~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~   86 (119)
T cd02952           8 GYEEFLK-LLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK   86 (119)
T ss_pred             CHHHHHH-HHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC
Confidence            3566777 4443  5799999999       999999999999999999998779999999976       358999999


Q ss_pred             CC-CccEEEEEcCCCCC
Q psy17502         86 VT-GFPTVKIFSDKRNP  101 (461)
Q Consensus        86 i~-~~P~l~~~~~g~~~  101 (461)
                      |. ++||+++|+.|+.+
T Consensus        87 I~~~iPT~~~~~~~~~l  103 (119)
T cd02952          87 LTTGVPTLLRWKTPQRL  103 (119)
T ss_pred             cccCCCEEEEEcCCcee
Confidence            98 99999999876543

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.41  E-value=1.6e-12  Score=100.13  Aligned_cols=92  Identities=30%  Similarity=0.532  Sum_probs=82.3

Q ss_pred             hhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCc
Q psy17502        148 FEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDA  227 (461)
Q Consensus       148 ~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~  227 (461)
                      +...+.+.++++++.|+++||+.|+.+.+.++++++.+.+.+.++.+|++++++++.++++.++|++++|++|    ...
T Consensus         5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g----~~v   80 (97)
T cd02949           5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK----ELV   80 (97)
T ss_pred             HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECC----eEE
Confidence            3445567889999999999999999999999999999988899999999999999999999999999999876    456


Q ss_pred             ccccCCCCHHHHHHHH
Q psy17502        228 QEYNGGRTSQDIVTWA  243 (461)
Q Consensus       228 ~~y~g~~~~~~i~~fi  243 (461)
                      ..+.|..+.+.|.+|+
T Consensus        81 ~~~~g~~~~~~~~~~l   96 (97)
T cd02949          81 KEISGVKMKSEYREFI   96 (97)
T ss_pred             EEEeCCccHHHHHHhh
Confidence            7788988899988886

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.41  E-value=2.4e-12  Score=101.58  Aligned_cols=103  Identities=21%  Similarity=0.316  Sum_probs=81.4

Q ss_pred             ceeEcCh-hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        139 AVVELTD-SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       139 ~v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      .+..+++ ++|.+.+ .++.+++|.||++||++|+.+.+.+.++++.+. .+.|+.+|+++..+++++|+|.+.|++++|
T Consensus         5 ~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f   82 (113)
T cd02989           5 KYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILF   82 (113)
T ss_pred             CeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence            3566766 8888876 567899999999999999999999999999885 589999999999999999999999999999


Q ss_pred             cCCCCCCc--Cccccc--CCCCHHHHHHHH
Q psy17502        218 SPGSRSAS--DAQEYN--GGRTSQDIVTWA  243 (461)
Q Consensus       218 ~~~~~~~~--~~~~y~--g~~~~~~i~~fi  243 (461)
                      ++|.....  ......  ++.+.+++..|+
T Consensus        83 k~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          83 KNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             ECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            98831110  011122  346677777665

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.41  E-value=2e-12  Score=101.06  Aligned_cols=94  Identities=23%  Similarity=0.365  Sum_probs=79.0

Q ss_pred             hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCcc----cHhhhhhcCcccccEEEEEc
Q psy17502        146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDATV----HQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~~----~~~l~~~~~i~~~P~i~~~~  218 (461)
                      +++.+.+ +++++++|.|+++||++|+.+.+.+   .+++..+.+.+.++.+|++.    ..+++++|++.++|++++|+
T Consensus         2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~   80 (104)
T cd02953           2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG   80 (104)
T ss_pred             HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence            3455543 6789999999999999999999887   57888887789999999876    57899999999999999999


Q ss_pred             C-CCCCCcCcccccCCCCHHHHHHHH
Q psy17502        219 P-GSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       219 ~-~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      + ++   .....+.|..+.++|.+++
T Consensus        81 ~~~g---~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          81 PGGE---PEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CCCC---CCCcccccccCHHHHHHHh
Confidence            5 22   3667789999999998876

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>KOG0907|consensus

Probab=99.40  E-value=1.7e-12  Score=99.89  Aligned_cols=85  Identities=31%  Similarity=0.643  Sum_probs=72.9

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG  233 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~  233 (461)
                      ..+++++|.||++|||+|+.+.|.|.++|.++.+ +.|.++|+++..+++++++|...||+++|++|    +....+-|.
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g----~~~~~~vGa   93 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG----EEVDEVVGA   93 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECC----EEEEEEecC
Confidence            4468999999999999999999999999999987 99999999989999999999999999999998    456666665


Q ss_pred             CCHHHHHHHHH
Q psy17502        234 RTSQDIVTWAL  244 (461)
Q Consensus       234 ~~~~~i~~fi~  244 (461)
                      .. +.+.+.+.
T Consensus        94 ~~-~~l~~~i~  103 (106)
T KOG0907|consen   94 NK-AELEKKIA  103 (106)
T ss_pred             CH-HHHHHHHH
Confidence            32 35555554

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.36  E-value=6.8e-12  Score=101.15  Aligned_cols=77  Identities=13%  Similarity=0.245  Sum_probs=68.6

Q ss_pred             Chhhhhhhhh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE-EEcCC
Q psy17502        144 TDSNFEKLVY-NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK-FFSPG  220 (461)
Q Consensus       144 ~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~-~~~~~  220 (461)
                      +.+++++.+. ..+++++|.|+++||++|+.+.|.+.++|+.+.+.+.|+.||+++.+++++.|+|.+.|+++ +|++|
T Consensus        10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g   88 (142)
T PLN00410         10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK   88 (142)
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence            5677887765 45779999999999999999999999999999888999999999999999999999776666 88887

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.35  E-value=7.4e-12  Score=96.53  Aligned_cols=94  Identities=24%  Similarity=0.515  Sum_probs=77.0

Q ss_pred             hhhhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCC
Q psy17502        145 DSNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRS  223 (461)
Q Consensus       145 ~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~  223 (461)
                      .+++++.+... +++++|.||++||++|+.+.+.+.+++..+.+.+.|+.+|+++..+++++|++.++|++++|++|   
T Consensus         2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g---   78 (97)
T cd02984           2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG---   78 (97)
T ss_pred             HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECC---
Confidence            45666665433 58999999999999999999999999999767899999999999999999999999999999877   


Q ss_pred             CcCcccccCCCCHHHHHHHH
Q psy17502        224 ASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       224 ~~~~~~y~g~~~~~~i~~fi  243 (461)
                       .....+.|. +.+.|.+.|
T Consensus        79 -~~~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          79 -TIVDRVSGA-DPKELAKKV   96 (97)
T ss_pred             -EEEEEEeCC-CHHHHHHhh
Confidence             344455553 556665544

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.34  E-value=1.3e-11  Score=101.61  Aligned_cols=106  Identities=18%  Similarity=0.299  Sum_probs=84.0

Q ss_pred             hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc--HhhhhhcCcccccEEEEEcCCCCC
Q psy17502        146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH--QRIAGEFNIRGYPTIKFFSPGSRS  223 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~--~~l~~~~~i~~~P~i~~~~~~~~~  223 (461)
                      .++++. ...+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.++++..  ..++++|+|.++|++++|..++  
T Consensus        11 ~~~~~a-~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G--   87 (142)
T cd02950          11 TPPEVA-LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG--   87 (142)
T ss_pred             CCHHHH-HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC--
Confidence            445554 36788999999999999999999999999999987788888776643  5789999999999999996432  


Q ss_pred             CcCcccccCCCCHHHHHHHHHhhccCCCCCCcc
Q psy17502        224 ASDAQEYNGGRTSQDIVTWALNKYTENVPPPEI  256 (461)
Q Consensus       224 ~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v  256 (461)
                       .....+.|....+.|.+++.....+ .++|..
T Consensus        88 -~~v~~~~G~~~~~~l~~~l~~l~~~-~~~~~~  118 (142)
T cd02950          88 -NEEGQSIGLQPKQVLAQNLDALVAG-EPLPYA  118 (142)
T ss_pred             -CEEEEEeCCCCHHHHHHHHHHHHcC-CCCCcc
Confidence             3556778988899999998876633 344443

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.34  E-value=7.8e-12  Score=97.90  Aligned_cols=107  Identities=14%  Similarity=0.163  Sum_probs=89.1

Q ss_pred             ceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHh---ccCcceEEEecccccchhHHHhhCCCCC
Q psy17502        256 IKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDK---YKQKVWGWIWSEAVAQPDLENVLEIGGF  332 (461)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~---~~~~~f~~v~~d~~~~~~~~~~lgl~~~  332 (461)
                      |++++.++...++..+.+..++++       ++++.+.+...++++|++   ||+++ .|+++|.......++.||++..
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f-------~~~~~~~~~~~~~~vAk~~~~~kgki-~Fv~~d~~~~~~~~~~fgl~~~   72 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFH-------DKDDLESLKEFKQAVARQLISEKGAI-NFLTADGDKFRHPLLHLGKTPA   72 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEe-------cchHHHHHHHHHHHHHHHHHhcCceE-EEEEEechHhhhHHHHcCCCHh
Confidence            356667777677767777777665       266778999999999999   99996 7888887777779999999977


Q ss_pred             CCccEEEEccCc-cccccCCCCCCHHHHHHHHHHHhcCC
Q psy17502        333 GYPAMAVLNAKK-MKYSLLKGPFSYDGINEFLRDLSYGR  370 (461)
Q Consensus       333 ~~P~l~i~~~~~-~k~~~~~~~~~~~~i~~Fi~~~~~Gk  370 (461)
                      ++|+++|.+..+ .||..+.++++.++|.+|++++++|+
T Consensus        73 ~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk  111 (111)
T cd03072          73 DLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK  111 (111)
T ss_pred             HCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence            899999999876 58875678899999999999999996

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PTZ00051 thioredoxin; Provisional

Probab=99.33  E-value=9.5e-12  Score=96.11  Aligned_cols=93  Identities=30%  Similarity=0.602  Sum_probs=76.4

Q ss_pred             eeEcC-hhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        140 VVELT-DSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       140 v~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      +..++ .+++.+. .+.+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++....++++|++.++|++++|+
T Consensus         2 v~~i~~~~~~~~~-~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   79 (98)
T PTZ00051          2 VHIVTSQAEFEST-LSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFK   79 (98)
T ss_pred             eEEecCHHHHHHH-HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence            34454 4566665 5778899999999999999999999999999874 5899999999999999999999999999999


Q ss_pred             CCCCCCcCcccccCCCCHHHH
Q psy17502        219 PGSRSASDAQEYNGGRTSQDI  239 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~~~~i  239 (461)
                      +|    .....+.|. ..++|
T Consensus        80 ~g----~~~~~~~G~-~~~~~   95 (98)
T PTZ00051         80 NG----SVVDTLLGA-NDEAL   95 (98)
T ss_pred             CC----eEEEEEeCC-CHHHh
Confidence            87    355566774 44444

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.33  E-value=4.7e-12  Score=100.44  Aligned_cols=92  Identities=13%  Similarity=0.259  Sum_probs=70.2

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-hhHhhcCCCC--ccEEEEEc-CCCCCc---
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-SLSSSHGVTG--FPTVKIFS-DKRNPT---  102 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-~l~~~~~i~~--~P~l~~~~-~g~~~~---  102 (461)
                      ...+++++||.|||+||++|+.+.|.+.+.+........|..||.+.++ .+.++|++.+  +||+++|. +|+...   
T Consensus        15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~   94 (117)
T cd02959          15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEII   94 (117)
T ss_pred             HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhc
Confidence            5667889999999999999999999999877654333456666666554 4567899987  99999997 776654   


Q ss_pred             cccCCcchhHHHHHHHHHH
Q psy17502        103 PYQGARTADAIIDVALEAI  121 (461)
Q Consensus       103 ~y~g~~~~~~i~~~i~~~~  121 (461)
                      ...|..+...+.+.+...+
T Consensus        95 ~~~~~~~~~~f~~~~~~~~  113 (117)
T cd02959          95 NKKGNPNYKYFYSSAAQVT  113 (117)
T ss_pred             cCCCCccccccCCCHHHHH
Confidence            5677777777777666554

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.32  E-value=2.5e-10  Score=102.60  Aligned_cols=207  Identities=14%  Similarity=0.268  Sum_probs=135.5

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhh------HHHHHH-HHHhc-CceEEEEEeCcccHhhhhhcCccc
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLE------PHWEKA-ASELE-GKVKLGAVDATVHQRIAGEFNIRG  210 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~------~~~~~~-a~~~~-~~i~f~~v~~~~~~~l~~~~~i~~  210 (461)
                      -|+.|+..||.+.+ ...+..+|+||.+--+ .+...      ..+-++ |+.+. ..+.||.||...+..+++++|+..
T Consensus        35 RVi~LneKNfk~~l-Kkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E  112 (383)
T PF01216_consen   35 RVIDLNEKNFKRAL-KKYDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE  112 (383)
T ss_dssp             -CEEE-TTTHHHHH-HH-SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S
T ss_pred             ceEEcchhHHHHHH-HhhcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc
Confidence            37899999999975 6678888999987532 23332      223333 44443 469999999999999999999999


Q ss_pred             ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhc-CCCeEEEEEeCCccccChh
Q psy17502        211 YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACE-DHPLCIVAVLPHILDCQSS  289 (461)
Q Consensus       211 ~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~  289 (461)
                      .++|.+|+.+     +...|+|.++++.++.||....     ..+|..+++...+..|.. ...+-+++++..      +
T Consensus       113 ~~SiyVfkd~-----~~IEydG~~saDtLVeFl~dl~-----edPVeiIn~~~e~~~Fe~ied~~klIGyFk~------~  176 (383)
T PF01216_consen  113 EGSIYVFKDG-----EVIEYDGERSADTLVEFLLDLL-----EDPVEIINNKHELKAFERIEDDIKLIGYFKS------E  176 (383)
T ss_dssp             TTEEEEEETT-----EEEEE-S--SHHHHHHHHHHHH-----SSSEEEE-SHHHHHHHHH--SS-EEEEE-SS------T
T ss_pred             cCcEEEEECC-----cEEEecCccCHHHHHHHHHHhc-----ccchhhhcChhhhhhhhhcccceeEEEEeCC------C
Confidence            9999999998     8899999999999999999877     455888888887776654 335677777642      2


Q ss_pred             hHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCccc-cccCCCCCCHHHHHHHHHHHhc
Q psy17502        290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMK-YSLLKGPFSYDGINEFLRDLSY  368 (461)
Q Consensus       290 ~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k-~~~~~~~~~~~~i~~Fi~~~~~  368 (461)
                      ..+ ....+.++|..|...+ .|..   ...+.+++.+|+.   .--+-++.+--.. -.++....+.+.|.+||++...
T Consensus       177 ~s~-~yk~FeeAAe~F~p~I-kFfA---tfd~~vAk~L~lK---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r  248 (383)
T PF01216_consen  177 DSE-HYKEFEEAAEHFQPYI-KFFA---TFDKKVAKKLGLK---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR  248 (383)
T ss_dssp             TSH-HHHHHHHHHHHCTTTS-EEEE---E-SHHHHHHHT-S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S
T ss_pred             CcH-HHHHHHHHHHhhcCce-eEEE---EecchhhhhcCcc---ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhch
Confidence            222 4578899999999877 3321   1356789999996   4556666554322 2334457899999999999864


Q ss_pred             CCC
Q psy17502        369 GRG  371 (461)
Q Consensus       369 Gkl  371 (461)
                      -.+
T Consensus       249 ptl  251 (383)
T PF01216_consen  249 PTL  251 (383)
T ss_dssp             -SE
T ss_pred             hHh
Confidence            433

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.31  E-value=1.2e-11  Score=94.83  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=67.3

Q ss_pred             hhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCC
Q psy17502        146 SNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG  220 (461)
Q Consensus       146 ~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~  220 (461)
                      +++++.+.+ .+++++|.|+++||++|+.+.|.+.++|..+++.+.|+.||+++.++++++|+|...|+.++|++|
T Consensus         3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkng   78 (114)
T cd02986           3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG   78 (114)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence            455555543 488999999999999999999999999999976699999999999999999999989999999987

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>KOG1731|consensus

Probab=99.29  E-value=1.6e-11  Score=117.22  Aligned_cols=132  Identities=29%  Similarity=0.630  Sum_probs=100.5

Q ss_pred             CCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCc--ccHhhhhhcCcc
Q psy17502        135 GSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE---GKVKLGAVDAT--VHQRIAGEFNIR  209 (461)
Q Consensus       135 ~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~---~~i~f~~v~~~--~~~~l~~~~~i~  209 (461)
                      .+.++|+.|+..+|...+..++...+|.||++|||+|..+.|.|+++|+.+.   +-+.++.|||.  ++..+|++++|.
T Consensus        36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~  115 (606)
T KOG1731|consen   36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS  115 (606)
T ss_pred             CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence            3458899999999999988877899999999999999999999999999987   45889999995  478899999999


Q ss_pred             cccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccC------CCCCCcceeecCHHHHH
Q psy17502        210 GYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTE------NVPPPEIKQIVSEATFK  266 (461)
Q Consensus       210 ~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~------~~~~p~v~~~~~~~~~~  266 (461)
                      ++|+|.+|.++.........+.|+....+|...+.+...+      ...-|.+..+.+.+.+.
T Consensus       116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~  178 (606)
T KOG1731|consen  116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLE  178 (606)
T ss_pred             CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHH
Confidence            9999999998755433345566666566666665543321      11345555554444443

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.28  E-value=3e-10  Score=115.65  Aligned_cols=187  Identities=18%  Similarity=0.218  Sum_probs=148.9

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc-CCCC-CccccCCcch
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS-DKRN-PTPYQGARTA  110 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~-~g~~-~~~y~g~~~~  110 (461)
                      .+++.|+.|+.+.|..|..+..-+++++ .+.+++.+-..|..++++++++|++...|++.+++ +|.. -.+|.|.-..
T Consensus       365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G  443 (555)
T TIGR03143       365 ENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG  443 (555)
T ss_pred             CCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence            4456888999999999999998888888 56778999899999999999999999999999995 4433 3789999999


Q ss_pred             hHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCe-EEEEEeCCCChhhhhhhHHHHHHHHHhcCce
Q psy17502        111 DAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHWEKAASELEGKV  189 (461)
Q Consensus       111 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~-~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i  189 (461)
                      .++..||...+.-.             ..-..++.+..+.. ..-+++ .+-.|.+++|++|......+.++|... +.+
T Consensus       444 ~Ef~s~i~~i~~~~-------------~~~~~l~~~~~~~i-~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i  508 (555)
T TIGR03143       444 HELNSFILALYNAA-------------GPGQPLGEELLEKI-KKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PNV  508 (555)
T ss_pred             HhHHHHHHHHHHhc-------------CCCCCCCHHHHHHH-HhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CCc
Confidence            99999998876322             11224555544443 333444 455678999999999999999998876 378


Q ss_pred             EEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        190 KLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       190 ~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      ..-.+|.+..++++++|+|.++|++++  +      ....+.|..+.++|..|+
T Consensus       509 ~~~~i~~~~~~~~~~~~~v~~vP~~~i--~------~~~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       509 EAEMIDVSHFPDLKDEYGIMSVPAIVV--D------DQQVYFGKKTIEEMLELI  554 (555)
T ss_pred             eEEEEECcccHHHHHhCCceecCEEEE--C------CEEEEeeCCCHHHHHHhh
Confidence            888899999999999999999999988  2      234577988999998886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.27  E-value=3.7e-11  Score=94.89  Aligned_cols=90  Identities=17%  Similarity=0.200  Sum_probs=76.2

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG  233 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~  233 (461)
                      ..+..++|.|+++||++|+.+.+.+++++..+ +.+.|..+|.+++++++.+|+|.+.|++++|+++..  .....|.|.
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~--~~~~~~~G~   96 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGK--DGGIRYYGL   96 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCee--cceEEEEec
Confidence            44566888889999999999999999999877 679999999999999999999999999999997632  123368888


Q ss_pred             CCHHHHHHHHHhh
Q psy17502        234 RTSQDIVTWALNK  246 (461)
Q Consensus       234 ~~~~~i~~fi~~~  246 (461)
                      ....++.+||...
T Consensus        97 ~~~~el~~~i~~i  109 (113)
T cd02975          97 PAGYEFASLIEDI  109 (113)
T ss_pred             CchHHHHHHHHHH
Confidence            8888888888653

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.27  E-value=3.7e-11  Score=102.30  Aligned_cols=103  Identities=17%  Similarity=0.285  Sum_probs=83.3

Q ss_pred             CCceeEcCh-hhhhhhhhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccE
Q psy17502        137 SKAVVELTD-SNFEKLVYNSD--DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       137 ~~~v~~l~~-~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~  213 (461)
                      -..+..++. ++|.+.+.+.+  .+++|.||++||++|+.+.+.+.++|..+. .+.|+.||++.. .++.+|+|...||
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT  138 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA  138 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence            345778888 99988875543  489999999999999999999999999984 799999999876 8999999999999


Q ss_pred             EEEEcCCCCCCcCccccc-------CCCCHHHHHHHHHh
Q psy17502        214 IKFFSPGSRSASDAQEYN-------GGRTSQDIVTWALN  245 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~-------g~~~~~~i~~fi~~  245 (461)
                      +++|++|.    ....+.       ++++.+.|..|+.+
T Consensus       139 lllyk~G~----~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         139 LLVYKGGE----LIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             EEEEECCE----EEEEEechHHhcCCCCCHHHHHHHHHh
Confidence            99999883    222221       24677777777654

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.25  E-value=4.3e-11  Score=95.18  Aligned_cols=99  Identities=14%  Similarity=0.164  Sum_probs=74.3

Q ss_pred             CccchhHHHhcCCCeEEEEEECCCCHhHHhhHHH-H--HHHHHHcCCceEEEEEecCCchhhHhh--------cCCCCcc
Q psy17502         22 TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDE-Y--MKLATALKGVVKVGAVNADEEKSLSSS--------HGVTGFP   90 (461)
Q Consensus        22 ~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~-~--~~~a~~~~~~v~~~~vd~~~~~~l~~~--------~~i~~~P   90 (461)
                      +++.+.. ..++++++||.|+++||+.|+.+.+. |  .++++.+...+.+++||.++.++++++        ||+.|+|
T Consensus         4 ~~eal~~-Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P   82 (124)
T cd02955           4 GEEAFEK-ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP   82 (124)
T ss_pred             CHHHHHH-HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence            3455666 78899999999999999999999874 3  467777766799999999998887763        5899999


Q ss_pred             EEEEEc-CCCCCccccC-----CcchhHHHHHHHHHH
Q psy17502         91 TVKIFS-DKRNPTPYQG-----ARTADAIIDVALEAI  121 (461)
Q Consensus        91 ~l~~~~-~g~~~~~y~g-----~~~~~~i~~~i~~~~  121 (461)
                      +++++. +|+.+....+     ..+...+..++.+..
T Consensus        83 t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (124)
T cd02955          83 LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR  119 (124)
T ss_pred             EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence            999997 5554433222     244556777776543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.24  E-value=1.4e-11  Score=97.79  Aligned_cols=86  Identities=26%  Similarity=0.473  Sum_probs=66.1

Q ss_pred             cCCCeEEEEEECCCCHhHHhhHHHHHH---HHHHcCCceEEEEEecCCc--------------------hhhHhhcCCCC
Q psy17502         32 KSDEVWIVEYYAPWCGHCQSFKDEYMK---LATALKGVVKVGAVNADEE--------------------KSLSSSHGVTG   88 (461)
Q Consensus        32 ~~~~~~lv~f~~~~c~~C~~~~~~~~~---~a~~~~~~v~~~~vd~~~~--------------------~~l~~~~~i~~   88 (461)
                      .++++.+++|++|||++|+.+.+++.+   +...++.++.++.++++..                    .++++++||++
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            367899999999999999999999885   4455555688888888754                    35889999999


Q ss_pred             ccEEEEEc-CCCCCccccCCcchhHHHHHH
Q psy17502         89 FPTVKIFS-DKRNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        89 ~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i  117 (461)
                      +||++++. +|+.+..+.|..+.++|.+++
T Consensus        83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            99999997 777777899999999998865

...

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.24  E-value=5.7e-11  Score=90.45  Aligned_cols=91  Identities=34%  Similarity=0.682  Sum_probs=78.8

Q ss_pred             hhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcC
Q psy17502        147 NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASD  226 (461)
Q Consensus       147 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~  226 (461)
                      ++.+.+ ..+.+++|.|+++||+.|..+.+.+.++++. .+.+.|+.+|++....++.++++.++|++++|+.|    ..
T Consensus         2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g----~~   75 (93)
T cd02947           2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG----KE   75 (93)
T ss_pred             chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECC----EE
Confidence            345444 4448899999999999999999999999988 67899999999999999999999999999999987    45


Q ss_pred             cccccCCCCHHHHHHHH
Q psy17502        227 AQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       227 ~~~y~g~~~~~~i~~fi  243 (461)
                      ...+.|..+.+.|.+||
T Consensus        76 ~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          76 VDRVVGADPKEELEEFL   92 (93)
T ss_pred             EEEEecCCCHHHHHHHh
Confidence            66778888889988886

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PHA02125 thioredoxin-like protein

Probab=99.23  E-value=3.2e-11  Score=87.64  Aligned_cols=69  Identities=22%  Similarity=0.472  Sum_probs=55.6

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCC-cchhHHHH
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA-RTADAIID  115 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~-~~~~~i~~  115 (461)
                      +++||++||++|+.+.|.+++++      +.++.||++++++++++|+|.++||++   +|+...++.|. .+..+|.+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~   71 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKE   71 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHH
Confidence            78999999999999999997653      468899999999999999999999987   45555677774 33344443

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.23  E-value=7.6e-11  Score=91.95  Aligned_cols=87  Identities=17%  Similarity=0.243  Sum_probs=75.6

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcc--cccEEEEEcCCCCCCcCccccc-C
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIR--GYPTIKFFSPGSRSASDAQEYN-G  232 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~--~~P~i~~~~~~~~~~~~~~~y~-g  232 (461)
                      +.++++.|+++||++|..+.+.+.++|+.+++.+.|+.+|+++...+++.+|+.  ++|++++++....   ....+. |
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~---~k~~~~~~   88 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDG---KKYLMPEE   88 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccc---cccCCCcc
Confidence            578999999999999999999999999999999999999999999999999999  9999999998311   223344 4


Q ss_pred             CCCHHHHHHHHHh
Q psy17502        233 GRTSQDIVTWALN  245 (461)
Q Consensus       233 ~~~~~~i~~fi~~  245 (461)
                      ..+.++|.+|+..
T Consensus        89 ~~~~~~l~~fi~~  101 (103)
T cd02982          89 ELTAESLEEFVED  101 (103)
T ss_pred             ccCHHHHHHHHHh
Confidence            4699999999975

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.22  E-value=3.8e-11  Score=87.29  Aligned_cols=72  Identities=21%  Similarity=0.304  Sum_probs=59.4

Q ss_pred             EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCC-cchhHHHHHH
Q psy17502         39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA-RTADAIIDVA  117 (461)
Q Consensus        39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~-~~~~~i~~~i  117 (461)
                      |.||++||++|+.+.|.++++++++..++.+..||   +.+.+.++++.++|++++  +|+..  +.|. .+.+.+.+++
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l   75 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL   75 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence            78999999999999999999999998788888887   355588999999999999  66544  7775 3446666654

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.19  E-value=1.5e-10  Score=92.33  Aligned_cols=98  Identities=14%  Similarity=0.181  Sum_probs=76.0

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-----------hhhhhcC
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-----------RIAGEFN  207 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-----------~l~~~~~  207 (461)
                      .+..++.+++.+.+ ++++.++|+|+++||++|+.+.|.+.++++..  ...+..+|.+.+.           ++.++++
T Consensus         7 ~~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~   83 (122)
T TIGR01295         7 GLEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG   83 (122)
T ss_pred             cceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence            35678888998875 66788999999999999999999999999983  4667777765332           4456665


Q ss_pred             ----cccccEEEEEcCCCCCCcCcccccC-CCCHHHHHHHH
Q psy17502        208 ----IRGYPTIKFFSPGSRSASDAQEYNG-GRTSQDIVTWA  243 (461)
Q Consensus       208 ----i~~~P~i~~~~~~~~~~~~~~~y~g-~~~~~~i~~fi  243 (461)
                          +.+.||+++|++|    .......| ..+.++|.+|+
T Consensus        84 i~~~i~~~PT~v~~k~G----k~v~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295        84 IPTSFMGTPTFVHITDG----KQVSVRCGSSTTAQELQDIA  120 (122)
T ss_pred             CcccCCCCCEEEEEeCC----eEEEEEeCCCCCHHHHHHHh
Confidence                4459999999999    45556677 45788888876

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.15  E-value=2.6e-10  Score=90.39  Aligned_cols=105  Identities=12%  Similarity=0.161  Sum_probs=90.7

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECC--CCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAP--WCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~--~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ....++..+.+. ++...+..+++|-.+  -++.+....-.+.++++++.+ ++.+++||++++++++.+|||.++||++
T Consensus        18 g~~~~~~~~~~~-~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl   96 (132)
T PRK11509         18 GWTPVSESRLDD-WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATL   96 (132)
T ss_pred             CCCccccccHHH-HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            445677788998 777777766666543  467788888889999999974 5999999999999999999999999999


Q ss_pred             EEcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         94 IFSDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        94 ~~~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      +|++|+.+..+.|.++.+.+.+||.+.+.
T Consensus        97 ~FkdGk~v~~i~G~~~k~~l~~~I~~~L~  125 (132)
T PRK11509         97 VFTGGNYRGVLNGIHPWAELINLMRGLVE  125 (132)
T ss_pred             EEECCEEEEEEeCcCCHHHHHHHHHHHhc
Confidence            99999999999999999999999998874

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.15  E-value=3.2e-10  Score=97.83  Aligned_cols=101  Identities=17%  Similarity=0.276  Sum_probs=80.0

Q ss_pred             CCceeEcChhhhhhhhhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        137 SKAVVELTDSNFEKLVYNSD--DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      -..+..++..+|...+..+.  .+++|.||++||++|+.+.+.+.++|..+. .++|+.++++.   .+..|++.+.||+
T Consensus        81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~---~~~~~~i~~lPTl  156 (192)
T cd02988          81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ---CIPNYPDKNLPTI  156 (192)
T ss_pred             CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH---hHhhCCCCCCCEE
Confidence            35688899999987765543  489999999999999999999999999984 69999998764   2578999999999


Q ss_pred             EEEcCCCCCCcCccccc------C-CCCHHHHHHHHHh
Q psy17502        215 KFFSPGSRSASDAQEYN------G-GRTSQDIVTWALN  245 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~------g-~~~~~~i~~fi~~  245 (461)
                      ++|++|.    ....+.      | .++.++|..++.+
T Consensus       157 liyk~G~----~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         157 LVYRNGD----IVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             EEEECCE----EEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            9999983    222332      3 4677777766653

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0908|consensus

Probab=99.12  E-value=3.2e-10  Score=97.04  Aligned_cols=102  Identities=23%  Similarity=0.447  Sum_probs=84.1

Q ss_pred             eeEc-Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        140 VVEL-TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       140 v~~l-~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      |+.+ ++++|...+.. ..+.++|.|++.||++|+...|.|..+|.+| ....|.+||+++.+..+..+||...||.++|
T Consensus         3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p~aVFlkVdVd~c~~taa~~gV~amPTFiff   81 (288)
T KOG0908|consen    3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-PGAVFLKVDVDECRGTAATNGVNAMPTFIFF   81 (288)
T ss_pred             eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC-cccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence            4444 56778776643 3478999999999999999999999999999 5688999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +++    .....+.|. +...|.+-+.++.
T Consensus        82 ~ng----~kid~~qGA-d~~gLe~kv~~~~  106 (288)
T KOG0908|consen   82 RNG----VKIDQIQGA-DASGLEEKVAKYA  106 (288)
T ss_pred             ecC----eEeeeecCC-CHHHHHHHHHHHh
Confidence            998    456667775 5666666666665

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=99.12  E-value=5.9e-10  Score=87.08  Aligned_cols=105  Identities=17%  Similarity=0.247  Sum_probs=78.7

Q ss_pred             eecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhcc-CcceEEEecccccchhHHHhhCCCCCC--C
Q psy17502        258 QIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYK-QKVWGWIWSEAVAQPDLENVLEIGGFG--Y  334 (461)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~-~~~f~~v~~d~~~~~~~~~~lgl~~~~--~  334 (461)
                      +++.++....+  ..+++++++ ...+..+.++.+.++..++++|++|| +++ .|+++|...+...++.|||+..+  .
T Consensus         3 ~~~~en~~~~~--~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~vAk~fk~gki-~Fv~~D~~~~~~~l~~fgl~~~~~~~   78 (111)
T cd03073           3 HRTKDNRAQFT--KKPLVVAYY-NVDYSKNPKGTNYWRNRVLKVAKDFPDRKL-NFAVADKEDFSHELEEFGLDFSGGEK   78 (111)
T ss_pred             eeccchHHHhc--cCCeEEEEE-eccccCChhHHHHHHHHHHHHHHHCcCCeE-EEEEEcHHHHHHHHHHcCCCcccCCC
Confidence            45555555443  445544433 22233356778999999999999999 686 78888876666789999999766  9


Q ss_pred             ccEEEEccCccccccCCCCC-CHHHHHHHHHHHh
Q psy17502        335 PAMAVLNAKKMKYSLLKGPF-SYDGINEFLRDLS  367 (461)
Q Consensus       335 P~l~i~~~~~~k~~~~~~~~-~~~~i~~Fi~~~~  367 (461)
                      |+++|++..+.||.+ .+++ +.++|.+|+++++
T Consensus        79 P~~~i~~~~~~KY~~-~~~~~t~e~i~~F~~~f~  111 (111)
T cd03073          79 PVVAIRTAKGKKYVM-EEEFSDVDALEEFLEDFF  111 (111)
T ss_pred             CEEEEEeCCCCccCC-CcccCCHHHHHHHHHHhC
Confidence            999999876678874 6678 9999999999874

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.12  E-value=5.9e-10  Score=90.18  Aligned_cols=96  Identities=14%  Similarity=0.288  Sum_probs=76.1

Q ss_pred             hhhhhhhcCC-CeEEEEEeCCCChhhhhhhHHHH---HHHHHhcCceEEEEEeCccc-------------HhhhhhcCcc
Q psy17502        147 NFEKLVYNSD-DIWLVEFFAPWCGHCKNLEPHWE---KAASELEGKVKLGAVDATVH-------------QRIAGEFNIR  209 (461)
Q Consensus       147 ~~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~i~f~~v~~~~~-------------~~l~~~~~i~  209 (461)
                      ++++. .+++ ++++|.|+++||++|+.+.+.+.   .+.+.+++.+.+..+|.+.+             .+++.+|++.
T Consensus         5 ~~~~a-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~   83 (125)
T cd02951           5 DLAEA-AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR   83 (125)
T ss_pred             HHHHH-HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence            34444 3566 89999999999999999998875   56666666788888887653             6889999999


Q ss_pred             cccEEEEEcCC-CCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        210 GYPTIKFFSPG-SRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       210 ~~P~i~~~~~~-~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ++|+++++.++ +   ....++.|..+.+.+.+++...
T Consensus        84 ~~Pt~~~~~~~gg---~~~~~~~G~~~~~~~~~~l~~~  118 (125)
T cd02951          84 FTPTVIFLDPEGG---KEIARLPGYLPPDEFLAYLEYV  118 (125)
T ss_pred             cccEEEEEcCCCC---ceeEEecCCCCHHHHHHHHHHH
Confidence            99999999975 3   2556788988888888887654

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.11  E-value=3.5e-10  Score=114.48  Aligned_cols=98  Identities=19%  Similarity=0.332  Sum_probs=79.3

Q ss_pred             CccchhHHH---hcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCc----hhhHhhcCCCCccE
Q psy17502         22 TTSNFDDKV---IKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEE----KSLSSSHGVTGFPT   91 (461)
Q Consensus        22 ~~~~f~~~~---~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~P~   91 (461)
                      +.+++++.+   ..++++++|.|||+||++|+.+.+..   .++.+.++ ++.+.++|.+++    .+++++|++.++|+
T Consensus       459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt  537 (571)
T PRK00293        459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT  537 (571)
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence            345666522   13468999999999999999998875   67777776 488999999753    67999999999999


Q ss_pred             EEEEc-CCCC--CccccCCcchhHHHHHHHHH
Q psy17502         92 VKIFS-DKRN--PTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        92 l~~~~-~g~~--~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +++|+ +|+.  ..++.|..+.+++.+++++.
T Consensus       538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             EEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence            99997 6665  36789999999999998864

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.11  E-value=7.1e-10  Score=82.42  Aligned_cols=79  Identities=24%  Similarity=0.366  Sum_probs=69.7

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHH
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQD  238 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~  238 (461)
                      .+..|+++||++|+.+.+.+.++++.++..+.+..+|.++++++++++++.++|++++  +|     . ..+.|..+.+.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g-----~-~~~~G~~~~~~   73 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NG-----D-VEFIGAPTKEE   73 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CC-----E-EEEecCCCHHH
Confidence            4678999999999999999999999998789999999999999999999999999986  44     2 36789889999


Q ss_pred             HHHHHHh
Q psy17502        239 IVTWALN  245 (461)
Q Consensus       239 i~~fi~~  245 (461)
                      +.+++.+
T Consensus        74 l~~~l~~   80 (82)
T TIGR00411        74 LVEAIKK   80 (82)
T ss_pred             HHHHHHh
Confidence            9988865

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.08  E-value=4.4e-10  Score=110.31  Aligned_cols=92  Identities=21%  Similarity=0.312  Sum_probs=76.1

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEE----------------------------ecCCchhh
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAV----------------------------NADEEKSL   80 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~v----------------------------d~~~~~~l   80 (461)
                      .+.++++++|.|||+||++|+..+|++++++++++. .+.++.|                            +++.+..+
T Consensus        52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l  131 (521)
T PRK14018         52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL  131 (521)
T ss_pred             eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence            355778999999999999999999999999998863 3555444                            34456678


Q ss_pred             HhhcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         81 SSSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        81 ~~~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++.|+|+++|+++++. +|+....+.|..+.++|..+|+...
T Consensus       132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~  173 (521)
T PRK14018        132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPN  173 (521)
T ss_pred             HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhh
Confidence            9999999999997764 7877788999999999999998543

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.07  E-value=1.1e-09  Score=94.20  Aligned_cols=102  Identities=19%  Similarity=0.285  Sum_probs=81.5

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC--------------------
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE--------------------   76 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~--------------------   76 (461)
                      +..++.+.+.- -.-.+++++|+||++||++|+...+.+.++++++.+. +.++.|+++.                    
T Consensus        46 ~~~~~g~~~~l-~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~  124 (173)
T PRK03147         46 LTDLEGKKIEL-KDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAI  124 (173)
T ss_pred             eecCCCCEEeH-HHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence            44455555543 2225678999999999999999999999999999764 8888888753                    


Q ss_pred             --chhhHhhcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHH
Q psy17502         77 --EKSLSSSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        77 --~~~l~~~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                        +..++++|++.++|+++++. +|+....+.|..+.+++.+++.+.
T Consensus       125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence              35688999999999999987 666666889999999999988753

>KOG0913|consensus

Probab=99.07  E-value=5.1e-11  Score=101.12  Aligned_cols=106  Identities=25%  Similarity=0.451  Sum_probs=93.9

Q ss_pred             CCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCCcc
Q psy17502         12 YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTGFP   90 (461)
Q Consensus        12 ~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~P   90 (461)
                      ...++.+..++++|... ++  ..-||++|+||||+.|+...|+|...|.--.+ .|.++.||.+.++-|.-+|-+...|
T Consensus        20 ~~r~s~~~~~~eenw~~-~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLp   96 (248)
T KOG0913|consen   20 PRRSSKLTRIDEENWKE-LL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALP   96 (248)
T ss_pred             ccccceeEEecccchhh-hh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecc
Confidence            33467899999999998 54  34599999999999999999999999875444 5999999999999999999999999


Q ss_pred             EEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         91 TVKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +|+..++| ...+|.|.++..++++|+..+-
T Consensus        97 tIYHvkDG-eFrrysgaRdk~dfisf~~~r~  126 (248)
T KOG0913|consen   97 TIYHVKDG-EFRRYSGARDKNDFISFEEHRE  126 (248)
T ss_pred             eEEEeecc-ccccccCcccchhHHHHHHhhh
Confidence            99999997 6679999999999999998764

>TIGR02740 TraF-like TraF-like protein

Probab=99.05  E-value=7e-10  Score=101.28  Aligned_cols=88  Identities=16%  Similarity=0.197  Sum_probs=71.8

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC-----------chhhHhhcCCCCccEEEEEcC-CCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE-----------EKSLSSSHGVTGFPTVKIFSD-KRN  100 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~-----------~~~l~~~~~i~~~P~l~~~~~-g~~  100 (461)
                      .++++||.||++||++|+.+.|.+.+++++++  +.+..|+.+.           +..+++++||.++|++++++. |+.
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~  242 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ  242 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence            36799999999999999999999999999985  4455555543           356899999999999999985 555


Q ss_pred             Cc-cccCCcchhHHHHHHHHHHh
Q psy17502        101 PT-PYQGARTADAIIDVALEAIR  122 (461)
Q Consensus       101 ~~-~y~g~~~~~~i~~~i~~~~~  122 (461)
                      +. ...|..+.++|.+.+.....
T Consensus       243 v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       243 FTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHhc
Confidence            54 35689999999999887653

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.05  E-value=6.3e-10  Score=79.06  Aligned_cols=57  Identities=21%  Similarity=0.318  Sum_probs=51.7

Q ss_pred             EEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         37 WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      -++.|+++||++|+.+.+.+++++... +++.+..+|.++++++++++|+.++|++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            478899999999999999999998754 459999999999999999999999999876

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.05  E-value=1.3e-09  Score=90.30  Aligned_cols=87  Identities=17%  Similarity=0.252  Sum_probs=65.5

Q ss_pred             hcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc------------hhhH-hhc---CCCCccEEEE
Q psy17502         31 IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE------------KSLS-SSH---GVTGFPTVKI   94 (461)
Q Consensus        31 ~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~------------~~l~-~~~---~i~~~P~l~~   94 (461)
                      +..+++.+|.|||+||++|++.+|.+++++++++  +.+..|+.++.            .... ..+   ++.++|+.++
T Consensus        47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L  124 (153)
T TIGR02738        47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL  124 (153)
T ss_pred             hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence            3456678999999999999999999999999884  44555555432            2333 345   7899999999


Q ss_pred             Ec-CCCC-CccccCCcchhHHHHHHHH
Q psy17502         95 FS-DKRN-PTPYQGARTADAIIDVALE  119 (461)
Q Consensus        95 ~~-~g~~-~~~y~g~~~~~~i~~~i~~  119 (461)
                      +. +|+. ...+.|..+.+++.+.+.+
T Consensus       125 ID~~G~~i~~~~~G~~s~~~l~~~I~~  151 (153)
T TIGR02738       125 VNVNTRKAYPVLQGAVDEAELANRMDE  151 (153)
T ss_pred             EeCCCCEEEEEeecccCHHHHHHHHHH
Confidence            97 4544 3467899999988877765

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.03  E-value=1.1e-09  Score=89.57  Aligned_cols=66  Identities=21%  Similarity=0.331  Sum_probs=54.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC--------ceEEEEEecCCch-------------------------h
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG--------VVKVGAVNADEEK-------------------------S   79 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~--------~v~~~~vd~~~~~-------------------------~   79 (461)
                      ++++++|+|||+||++|++++|.+.++++++++        ++.++.|+.+.+.                         .
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            568999999999999999999999998876643        4788888776432                         3


Q ss_pred             hHhhcCCCCccEEEEEc-CC
Q psy17502         80 LSSSHGVTGFPTVKIFS-DK   98 (461)
Q Consensus        80 l~~~~~i~~~P~l~~~~-~g   98 (461)
                      ++++|++.++|+++++. +|
T Consensus       104 l~~~y~v~~iPt~vlId~~G  123 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDG  123 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCC
Confidence            77789999999999998 44

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.03  E-value=1.6e-09  Score=82.98  Aligned_cols=64  Identities=23%  Similarity=0.471  Sum_probs=54.0

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcC--CceEEEEEecCCch-------------------------hhHhhcCC
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADEEK-------------------------SLSSSHGV   86 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~--~~v~~~~vd~~~~~-------------------------~l~~~~~i   86 (461)
                      +++++|+||++||++|+...|.+.++.++++  +++.++.|++++..                         .+.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            5789999999999999999999999999998  57999999988653                         27788899


Q ss_pred             CCccEEEEEcC
Q psy17502         87 TGFPTVKIFSD   97 (461)
Q Consensus        87 ~~~P~l~~~~~   97 (461)
                      .++|+++++..
T Consensus        81 ~~iP~~~lld~   91 (95)
T PF13905_consen   81 NGIPTLVLLDP   91 (95)
T ss_dssp             TSSSEEEEEET
T ss_pred             CcCCEEEEECC
Confidence            99999999874

...

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.02  E-value=2.6e-09  Score=83.99  Aligned_cols=77  Identities=18%  Similarity=0.323  Sum_probs=66.0

Q ss_pred             ChhhhhhhhhcC-CCeEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc-------cHhhhhhcCc
Q psy17502        144 TDSNFEKLVYNS-DDIWLVEFFA-------PWCGHCKNLEPHWEKAASELEGKVKLGAVDATV-------HQRIAGEFNI  208 (461)
Q Consensus       144 ~~~~~~~~~~~~-~~~~~v~f~~-------~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~-------~~~l~~~~~i  208 (461)
                      +.++|.+.+... +++++|.|+|       +||++|+.+.|.+++++..+.+.+.|+.||++.       +.+++.+++|
T Consensus         8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I   87 (119)
T cd02952           8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL   87 (119)
T ss_pred             CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence            456677766433 5799999999       999999999999999999998789999999865       4588999999


Q ss_pred             c-cccEEEEEcCC
Q psy17502        209 R-GYPTIKFFSPG  220 (461)
Q Consensus       209 ~-~~P~i~~~~~~  220 (461)
                      . +.||+++|+.+
T Consensus        88 ~~~iPT~~~~~~~  100 (119)
T cd02952          88 TTGVPTLLRWKTP  100 (119)
T ss_pred             ccCCCEEEEEcCC
Confidence            8 99999999765

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.02  E-value=1.5e-09  Score=88.14  Aligned_cols=79  Identities=22%  Similarity=0.382  Sum_probs=63.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe-----------------------cCCchhhHhhcCCCCc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN-----------------------ADEEKSLSSSHGVTGF   89 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~i~~~   89 (461)
                      .+++++|+||++||++|+...|.++++++++.  +.++.|+                       ++.+..+++.|++.++
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~  101 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV  101 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence            46799999999999999999999999988763  5555554                       3455678889999999


Q ss_pred             cEEEEEc-CCCCCccccCCcchhHH
Q psy17502         90 PTVKIFS-DKRNPTPYQGARTADAI  113 (461)
Q Consensus        90 P~l~~~~-~g~~~~~y~g~~~~~~i  113 (461)
                      |+.+++. +|+....+.|..+.+.|
T Consensus       102 P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010         102 PETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             CeEEEECCCceEEEEEeccCChHhc
Confidence            9766665 78777788898877654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PTZ00062 glutaredoxin; Provisional

Probab=99.01  E-value=1.1e-08  Score=88.53  Aligned_cols=115  Identities=8%  Similarity=0.125  Sum_probs=85.2

Q ss_pred             cChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCC
Q psy17502        143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSR  222 (461)
Q Consensus       143 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~  222 (461)
                      .+.+++.+.+..+...++++|+++||++|+.+.+.+.++++.+ +.+.|+.||.+        |+|.++|++++|++|  
T Consensus         4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d--------~~V~~vPtfv~~~~g--   72 (204)
T PTZ00062          4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA--------DANNEYGVFEFYQNS--   72 (204)
T ss_pred             CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc--------cCcccceEEEEEECC--
Confidence            3567777776433477889999999999999999999999998 57999999754        999999999999998  


Q ss_pred             CCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEE
Q psy17502        223 SASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIV  277 (461)
Q Consensus       223 ~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i  277 (461)
                        ....++.|. +...+..++.++...   .+ ...  ....+...++.+++.++
T Consensus        73 --~~i~r~~G~-~~~~~~~~~~~~~~~---~~-~~~--~~~~v~~li~~~~Vvvf  118 (204)
T PTZ00062         73 --QLINSLEGC-NTSTLVSFIRGWAQK---GS-SED--TVEKIERLIRNHKILLF  118 (204)
T ss_pred             --EEEeeeeCC-CHHHHHHHHHHHcCC---CC-HHH--HHHHHHHHHhcCCEEEE
Confidence              466677775 488899998776521   11 111  12334555566666554

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.00  E-value=2.9e-09  Score=92.24  Aligned_cols=90  Identities=14%  Similarity=0.235  Sum_probs=72.6

Q ss_pred             cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-----------------------hhHhhcCCCC
Q psy17502         32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-----------------------SLSSSHGVTG   88 (461)
Q Consensus        32 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~i~~   88 (461)
                      ..+++++|.||++||++|++.+|.+.+++++   .+.++.|+.++++                       .+++.|++.+
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~  142 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG  142 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence            3678999999999999999999999988753   3667777765432                       2455789999


Q ss_pred             ccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         89 FPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        89 ~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      +|+.+++. +|+....+.|..+.+.+.+++...+...
T Consensus       143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~  179 (185)
T PRK15412        143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY  179 (185)
T ss_pred             CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence            99877776 8877788899999999999998887554

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.97  E-value=2.2e-09  Score=87.71  Aligned_cols=66  Identities=23%  Similarity=0.459  Sum_probs=54.6

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCch-------------------------hhHhhc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEK-------------------------SLSSSH   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~-------------------------~l~~~~   84 (461)
                      .+++++|.||++||++|+..+|++.++++++++   ++.+..|+.+..+                         .+++.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            468999999999999999999999999998865   4667777665432                         456779


Q ss_pred             CCCCccEEEEEc-CC
Q psy17502         85 GVTGFPTVKIFS-DK   98 (461)
Q Consensus        85 ~i~~~P~l~~~~-~g   98 (461)
                      +|.++|+++++. +|
T Consensus        96 ~v~~iPt~~lid~~G  110 (132)
T cd02964          96 KVEGIPTLVVLKPDG  110 (132)
T ss_pred             CCCCCCEEEEECCCC
Confidence            999999999997 44

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.97  E-value=3.1e-09  Score=85.74  Aligned_cols=93  Identities=22%  Similarity=0.259  Sum_probs=69.5

Q ss_pred             EcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe---------------------cCCch
Q psy17502         20 KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN---------------------ADEEK   78 (461)
Q Consensus        20 ~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd---------------------~~~~~   78 (461)
                      .++.+.+.. ....+++++|.||++||++|+.+.|.+.++++++.  +..+.+|                     ++.+.
T Consensus         7 ~~~g~~~~~-~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (123)
T cd03011           7 TLDGEQFDL-ESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDG   83 (123)
T ss_pred             cCCCCEeeH-HHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCc
Confidence            344455555 33345899999999999999999999999988742  2222222                     13446


Q ss_pred             hhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHH
Q psy17502         79 SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID  115 (461)
Q Consensus        79 ~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~  115 (461)
                      +++++|+|.++|+++++.+++....+.|..+.++|.+
T Consensus        84 ~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~  120 (123)
T cd03011          84 VISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL  120 (123)
T ss_pred             HHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence            7999999999999999986656667889999888865

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.97  E-value=3.4e-09  Score=90.83  Aligned_cols=88  Identities=18%  Similarity=0.263  Sum_probs=70.1

Q ss_pred             hcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec-----------------------CCchhhHhhcCCC
Q psy17502         31 IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA-----------------------DEEKSLSSSHGVT   87 (461)
Q Consensus        31 ~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i~   87 (461)
                      ...+++++|+||++||++|++..|.++++++.   .+.++.|+.                       +.+..+.+.|++.
T Consensus        60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~  136 (173)
T TIGR00385        60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY  136 (173)
T ss_pred             hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence            34678999999999999999999999988763   245555553                       3334577789999


Q ss_pred             CccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         88 GFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        88 ~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++|+.+++. +|+....+.|..+.+++.+++.+.+
T Consensus       137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~  171 (173)
T TIGR00385       137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM  171 (173)
T ss_pred             eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence            999777765 7877778899999999999998875

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.97  E-value=4.3e-09  Score=83.48  Aligned_cols=92  Identities=12%  Similarity=0.131  Sum_probs=78.0

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecC--CchhhHhhcCCCCccEEEEEc--CCCCCc
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNAD--EEKSLSSSHGVTGFPTVKIFS--DKRNPT  102 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~--~g~~~~  102 (461)
                      ..+++++++|+|+++||..|+.+....   .++.+.++..+.+..+|.+  +..+++..|++.++|+++++.  +|+.+.
T Consensus        13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~   92 (114)
T cd02958          13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLK   92 (114)
T ss_pred             HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeE
Confidence            456788999999999999999997653   6677777767888888886  457899999999999999997  477788


Q ss_pred             cccCCcchhHHHHHHHHHH
Q psy17502        103 PYQGARTADAIIDVALEAI  121 (461)
Q Consensus       103 ~y~g~~~~~~i~~~i~~~~  121 (461)
                      +..|..+++++.+.+.+..
T Consensus        93 ~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          93 VWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             EEcCCCCHHHHHHHHHHHH
Confidence            8999999999999888765

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.95  E-value=3.5e-09  Score=86.49  Aligned_cols=67  Identities=21%  Similarity=0.465  Sum_probs=54.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCc------------------------hhhHhhcC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEE------------------------KSLSSSHG   85 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~------------------------~~l~~~~~   85 (461)
                      .+++++|+||++||++|+...|.+.++++++.+   .+.++.|+.+..                        ..++++|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            467999999999999999999999999988853   366666665533                        35788999


Q ss_pred             CCCccEEEEEc-CCC
Q psy17502         86 VTGFPTVKIFS-DKR   99 (461)
Q Consensus        86 i~~~P~l~~~~-~g~   99 (461)
                      |.++|+++++. +|+
T Consensus        97 v~~~P~~~lid~~G~  111 (131)
T cd03009          97 IEGIPTLIILDADGE  111 (131)
T ss_pred             CCCCCEEEEECCCCC
Confidence            99999999998 553

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.94  E-value=3.8e-09  Score=83.87  Aligned_cols=74  Identities=32%  Similarity=0.553  Sum_probs=64.0

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC-CceEEEEEecCCc-----------------------hhhHhhcCCCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK-GVVKVGAVNADEE-----------------------KSLSSSHGVTG   88 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~-~~v~~~~vd~~~~-----------------------~~l~~~~~i~~   88 (461)
                      .+++++|+||++||++|+...+.+.++.+++. ..+.++.|+++..                       ..+++.|++.+
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG   97 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence            36799999999999999999999999999986 3599999999875                       77899999999


Q ss_pred             ccEEEEEc-CCCCCccccC
Q psy17502         89 FPTVKIFS-DKRNPTPYQG  106 (461)
Q Consensus        89 ~P~l~~~~-~g~~~~~y~g  106 (461)
                      +|+++++. +|+....|.|
T Consensus        98 ~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          98 LPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             cceEEEECCCCcEEEEecC
Confidence            99999997 6655555554

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.93  E-value=4.2e-09  Score=78.82  Aligned_cols=77  Identities=12%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhH
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADA  112 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~  112 (461)
                      .++.-+..|+++||++|+...+.+.+++.... ++.+..+|.++.++++++|+|.++|++++  +|+.  .+.|..+.++
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~--~~~G~~~~~e   85 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL--FGFGRMTLEE   85 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE--EEeCCCCHHH
Confidence            45578999999999999999999999998764 59999999999999999999999999975  6643  3467655555


Q ss_pred             HH
Q psy17502        113 II  114 (461)
Q Consensus       113 i~  114 (461)
                      ++
T Consensus        86 ~~   87 (89)
T cd03026          86 IL   87 (89)
T ss_pred             Hh
Confidence            43

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.89  E-value=4.4e-09  Score=83.40  Aligned_cols=85  Identities=21%  Similarity=0.407  Sum_probs=58.8

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-hhhhhcCccc--ccEEEEEcCCCCCCcCccc
Q psy17502        153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-RIAGEFNIRG--YPTIKFFSPGSRSASDAQE  229 (461)
Q Consensus       153 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-~l~~~~~i~~--~P~i~~~~~~~~~~~~~~~  229 (461)
                      ...+++++|.|+++||++|+.+.+.+.+.+........|..++.+.+. .....|++.+  +|+++++.+.++.......
T Consensus        16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~   95 (117)
T cd02959          16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN   95 (117)
T ss_pred             HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence            467889999999999999999999999977654334456666655543 4457888876  9999999754432222233


Q ss_pred             ccCCCCHH
Q psy17502        230 YNGGRTSQ  237 (461)
Q Consensus       230 y~g~~~~~  237 (461)
                      ..|..+.+
T Consensus        96 ~~~~~~~~  103 (117)
T cd02959          96 KKGNPNYK  103 (117)
T ss_pred             CCCCcccc
Confidence            44444433

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>KOG0914|consensus

Probab=98.84  E-value=4.4e-09  Score=88.07  Aligned_cols=91  Identities=15%  Similarity=0.401  Sum_probs=75.8

Q ss_pred             CCCCceEc-CccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCC-
Q psy17502         14 SYSDVIKL-TTSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTG-   88 (461)
Q Consensus        14 ~~~~v~~l-~~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~-   88 (461)
                      ....+..+ +++.+++ .+..+  ..|+|.|++.|.+.|+.+.|.|.++..++.. .+.||+||....++.+++|+|.. 
T Consensus       122 gpe~ikyf~~~q~~de-el~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s  200 (265)
T KOG0914|consen  122 GPETIKYFTNMQLEDE-ELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLS  200 (265)
T ss_pred             CchheeeecchhhHHH-HhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccC
Confidence            34567778 4555555 55544  4899999999999999999999999999976 49999999999999999999864 


Q ss_pred             -----ccEEEEEcCCCCCcccc
Q psy17502         89 -----FPTVKIFSDKRNPTPYQ  105 (461)
Q Consensus        89 -----~P~l~~~~~g~~~~~y~  105 (461)
                           .||+++|.+|+.+.+..
T Consensus       201 ~~srQLPT~ilFq~gkE~~RrP  222 (265)
T KOG0914|consen  201 PGSRQLPTYILFQKGKEVSRRP  222 (265)
T ss_pred             cccccCCeEEEEccchhhhcCc
Confidence                 89999999997776543

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.84  E-value=1.6e-08  Score=80.26  Aligned_cols=76  Identities=17%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCc-hhhHhhcCCCCccEEEEEc-CCCCCccc
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEE-KSLSSSHGVTGFPTVKIFS-DKRNPTPY  104 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~P~l~~~~-~g~~~~~y  104 (461)
                      ..++++++||.|++.||++|+.+...+   .++++.+...+.++.++.+.. ..+. ..+ .++|+++|+. +|+.+.+.
T Consensus        19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~vi~~i   96 (130)
T cd02960          19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTVRADI   96 (130)
T ss_pred             HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCCcccc
Confidence            456889999999999999999998865   455555554566667776422 2221 234 7899999997 66555554


Q ss_pred             cCC
Q psy17502        105 QGA  107 (461)
Q Consensus       105 ~g~  107 (461)
                      .|.
T Consensus        97 ~Gy   99 (130)
T cd02960          97 TGR   99 (130)
T ss_pred             ccc
Confidence            443

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>smart00594 UAS UAS domain

Probab=98.79  E-value=3e-08  Score=79.52  Aligned_cols=88  Identities=13%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecC--CchhhHhhcCCCCccEEEEEc-CC-C---
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNAD--EEKSLSSSHGVTGFPTVKIFS-DK-R---   99 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~-~g-~---   99 (461)
                      ..+++++++|+|+++||+.|+.+....   .++.+.++..+.+..+|.+  +..+++++|++.++|++.++. +| +   
T Consensus        23 Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~  102 (122)
T smart00594       23 ASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVI  102 (122)
T ss_pred             HHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeE
Confidence            355778999999999999999987764   5666666667888788865  456799999999999999996 33 1   


Q ss_pred             -CCccccCCcchhHHHHHH
Q psy17502        100 -NPTPYQGARTADAIIDVA  117 (461)
Q Consensus       100 -~~~~y~g~~~~~~i~~~i  117 (461)
                       .+.+..|..+.+++..++
T Consensus       103 ~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      103 EWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEeccccCCCCHHHHHHhh
Confidence             356789999999998875

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=3.5e-08  Score=78.32  Aligned_cols=95  Identities=18%  Similarity=0.274  Sum_probs=76.6

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCc----------------hhhHhhcCCCCcc
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEE----------------KSLSSSHGVTGFP   90 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~----------------~~l~~~~~i~~~P   90 (461)
                      +..+++..+++|-++.|..|.++..++   .++.+.+.+.+.+..+|+...                ++|+++|+|+++|
T Consensus        38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP  117 (182)
T COG2143          38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP  117 (182)
T ss_pred             cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence            566788999999999999999998876   555566666677887777532                3799999999999


Q ss_pred             EEEEEc-CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         91 TVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        91 ~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      ++++|+ .|+.+....|....+++..-+.-.....
T Consensus       118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~  152 (182)
T COG2143         118 TFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGK  152 (182)
T ss_pred             eEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            999998 6778888899999999887666554433

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.75  E-value=1.1e-07  Score=73.09  Aligned_cols=93  Identities=25%  Similarity=0.443  Sum_probs=74.0

Q ss_pred             EcCh-hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCC
Q psy17502        142 ELTD-SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG  220 (461)
Q Consensus       142 ~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~  220 (461)
                      .+++ ++++.+ ...+++++|+|+.+++   ......|.++|..+++.+.|+.+.   +.++++++++.. |++++|++.
T Consensus         3 ~i~s~~~l~~~-~~~~~~~vvg~f~~~~---~~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~   74 (97)
T cd02981           3 ELTSKEELEKF-LDKDDVVVVGFFKDEE---SEEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPF   74 (97)
T ss_pred             ecCCHHHHHHH-hccCCeEEEEEECCCC---cHHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCc
Confidence            3433 345444 5778999999999884   467899999999999889999873   567788888875 999999886


Q ss_pred             CCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        221 SRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       221 ~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      .   +....|+|..+.++|.+||..
T Consensus        75 ~---~~~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          75 E---EEPVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             c---cCCccCCCCCCHHHHHHHHHh
Confidence            3   356779999999999999964

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.75  E-value=3.4e-08  Score=107.01  Aligned_cols=92  Identities=20%  Similarity=0.305  Sum_probs=77.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEec---------------------------CCchhhHhhc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNA---------------------------DEEKSLSSSH   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~---------------------------~~~~~l~~~~   84 (461)
                      .+++++|.|||+||++|+...|.+++++++++++ +.++.|.+                           +.+..+.++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            4789999999999999999999999999999765 66766642                           1233577889


Q ss_pred             CCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         85 GVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        85 ~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      +|.++|+++++. +|+...++.|....+.+.+++...+...
T Consensus       499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~  539 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYY  539 (1057)
T ss_pred             CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence            999999999995 8887788999999999999999887543

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.75  E-value=5.8e-08  Score=81.85  Aligned_cols=83  Identities=17%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-------------hhhHhhcCC--CCccEEEEEc-CCCCC
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-------------KSLSSSHGV--TGFPTVKIFS-DKRNP  101 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-------------~~l~~~~~i--~~~P~l~~~~-~g~~~  101 (461)
                      +|.||++||++|++..|.+.+++++++  +.+..|+.++.             ..+.+.|++  .++|+.+++. +|+..
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~  150 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA  150 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence            888999999999999999999999984  55655665533             226678885  6999999997 66543


Q ss_pred             -ccccCCcchhHHHHHHHHHHh
Q psy17502        102 -TPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus       102 -~~y~g~~~~~~i~~~i~~~~~  122 (461)
                       ..+.|..+.+++.+.+...+.
T Consensus       151 ~~~~~G~~~~~~L~~~I~~ll~  172 (181)
T PRK13728        151 LPLLQGATDAAGFMARMDTVLQ  172 (181)
T ss_pred             EEEEECCCCHHHHHHHHHHHHh
Confidence             468999999999888887763

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.75  E-value=1.8e-08  Score=74.66  Aligned_cols=66  Identities=23%  Similarity=0.439  Sum_probs=52.4

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      ..++++++||+|+++||+.|+.+...+   .++.+.+.+++.++.||.++.....+..+ .++|+++++.
T Consensus        13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld   81 (82)
T PF13899_consen   13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD   81 (82)
T ss_dssp             HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred             HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence            467899999999999999999998887   55555566679999999987665443222 7799999974

...

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.74  E-value=4.5e-08  Score=71.08  Aligned_cols=72  Identities=18%  Similarity=0.299  Sum_probs=57.5

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC-CCHHHH
Q psy17502        161 VEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG-RTSQDI  239 (461)
Q Consensus       161 v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~-~~~~~i  239 (461)
                      |.||++||++|+.+.+.++++++.+...+.|..+|   +.+.+.+|++.+.|++++  +|     ... +.|. .+.+.+
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G-----~~~-~~G~~~~~~~l   71 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DG-----ELV-IMGKIPSKEEI   71 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CC-----EEE-EEeccCCHHHH
Confidence            77999999999999999999999998788998886   234477899999999999  54     222 6775 355777


Q ss_pred             HHHH
Q psy17502        240 VTWA  243 (461)
Q Consensus       240 ~~fi  243 (461)
                      .+++
T Consensus        72 ~~~l   75 (76)
T TIGR00412        72 KEIL   75 (76)
T ss_pred             HHHh
Confidence            7665

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.73  E-value=2.1e-08  Score=79.72  Aligned_cols=60  Identities=20%  Similarity=0.346  Sum_probs=46.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe---cCCchhhHhhcCCCCccEE
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN---ADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd---~~~~~~l~~~~~i~~~P~l   92 (461)
                      ++++++|.||++||++|+...|.++++++.+.+++.++.+.   .++..++++++++..+|++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~   82 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV   82 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence            46799999999999999999999999998887666666552   2233456677777777765

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.71  E-value=6.8e-08  Score=78.18  Aligned_cols=75  Identities=13%  Similarity=0.185  Sum_probs=58.8

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecC-----Cc----------------------hhhHhhc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNAD-----EE----------------------KSLSSSH   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~-----~~----------------------~~l~~~~   84 (461)
                      ++++++|+||+.||++|++..|.+.++++++++ .+.++.|+..     ..                      ..+++.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            467999999999999999999999999999975 4777777652     11                      1366778


Q ss_pred             CCCCccEEEEEc-CCCCCccccCC
Q psy17502         85 GVTGFPTVKIFS-DKRNPTPYQGA  107 (461)
Q Consensus        85 ~i~~~P~l~~~~-~g~~~~~y~g~  107 (461)
                      ++.++|+.+++. +|+....+.|.
T Consensus       102 ~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         102 GNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             CCCcCCeEEEECCCCcEEEEEecC
Confidence            999999999996 66555555553

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PHA02125 thioredoxin-like protein

Probab=98.70  E-value=7.3e-08  Score=69.88  Aligned_cols=68  Identities=24%  Similarity=0.468  Sum_probs=52.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC-CCHHH
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG-RTSQD  238 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~-~~~~~  238 (461)
                      ++.|+++||++|+.+.+.+.+++      +.++.+|++...+++++|+|.++||++   .+    +....+.|. .+..+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g----~~~~~~~G~~~~~~~   68 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NT----STLDRFTGVPRNVAE   68 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CC----EEEEEEeCCCCcHHH
Confidence            68999999999999999987653      467889988899999999999999987   33    233456663 34444


Q ss_pred             HH
Q psy17502        239 IV  240 (461)
Q Consensus       239 i~  240 (461)
                      |.
T Consensus        69 l~   70 (75)
T PHA02125         69 LK   70 (75)
T ss_pred             HH
Confidence            43

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.67  E-value=6e-08  Score=76.74  Aligned_cols=87  Identities=22%  Similarity=0.387  Sum_probs=61.2

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHH---HHHHhcCceEEEEEeCccc--------------------HhhhhhcCccc
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWEK---AASELEGKVKLGAVDATVH--------------------QRIAGEFNIRG  210 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~---~a~~~~~~i~f~~v~~~~~--------------------~~l~~~~~i~~  210 (461)
                      .++++.++.|+++||++|+.+.+...+   +...+++.+.+..+++...                    .++++++||.+
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            467899999999999999999888775   4445555677777776532                    35888999999


Q ss_pred             ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        211 YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       211 ~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      +|+++++...+   .....+.|..+.++|..++
T Consensus        83 tPt~~~~d~~G---~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 TPTIVFLDKDG---KIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSEEEECTTTS---CEEEEEESS--HHHHHHHH
T ss_pred             cCEEEEEcCCC---CEEEEecCCCCHHHHHhhC
Confidence            99999997432   2455678999999987764

...

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.64  E-value=1.2e-07  Score=67.13  Aligned_cols=57  Identities=19%  Similarity=0.328  Sum_probs=51.2

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      -++.|+++||++|..+.+.+++++... +.+.|..+|.++++++++++++.+.|++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            467899999999999999999998754 579999999999999999999999999876

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.64  E-value=2e-07  Score=74.29  Aligned_cols=77  Identities=21%  Similarity=0.305  Sum_probs=59.7

Q ss_pred             hhhhhhhhhcCCCeEEEEEeCCCChhhhhhhH-HHHH--HHHHhcCceEEEEEeCcccHhhhh--------hcCcccccE
Q psy17502        145 DSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEP-HWEK--AASELEGKVKLGAVDATVHQRIAG--------EFNIRGYPT  213 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~-~~~~--~a~~~~~~i~f~~v~~~~~~~l~~--------~~~i~~~P~  213 (461)
                      ++.+.+. .+++++++|.|+++||+.|+.+.+ .|..  ++..+...+.++.+|.++.+++++        .+++.++|+
T Consensus         5 ~eal~~A-k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt   83 (124)
T cd02955           5 EEAFEKA-RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL   83 (124)
T ss_pred             HHHHHHH-HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence            4445543 577899999999999999999875 4543  666666789999999887776654        358999999


Q ss_pred             EEEEcCCCC
Q psy17502        214 IKFFSPGSR  222 (461)
Q Consensus       214 i~~~~~~~~  222 (461)
                      ++++.+.++
T Consensus        84 ~vfl~~~G~   92 (124)
T cd02955          84 NVFLTPDLK   92 (124)
T ss_pred             EEEECCCCC
Confidence            999987643

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.62  E-value=2.5e-07  Score=93.95  Aligned_cols=105  Identities=18%  Similarity=0.332  Sum_probs=78.5

Q ss_pred             eeEc-Chhhhhhhhh---cCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCcc----cHhhhhhcCc
Q psy17502        140 VVEL-TDSNFEKLVY---NSDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDATV----HQRIAGEFNI  208 (461)
Q Consensus       140 v~~l-~~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~~----~~~l~~~~~i  208 (461)
                      ...+ +.+++++.+.   .++++++|.||++||++|+.+.+..   .++.+.++ ++.+..+|.++    +.+++++|++
T Consensus       454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v  532 (571)
T PRK00293        454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNV  532 (571)
T ss_pred             ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCC
Confidence            3444 4456655442   3468999999999999999987764   56677775 58899999875    3678999999


Q ss_pred             ccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       209 ~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      .++|++++|+++++. -...++.|..+.+++.+++.+.
T Consensus       533 ~g~Pt~~~~~~~G~~-i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        533 LGLPTILFFDAQGQE-IPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             CCCCEEEEECCCCCC-cccccccCCCCHHHHHHHHHHh
Confidence            999999999854320 0135678999999999998753

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.62  E-value=3.1e-06  Score=85.82  Aligned_cols=177  Identities=15%  Similarity=0.183  Sum_probs=130.5

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC-CccccCCcchhH
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN-PTPYQGARTADA  112 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~-~~~y~g~~~~~~  112 (461)
                      +++.|+.|.. .|..|..+..-+++++. +.+++.+-..+..           ...|++.+..+|+. -.+|.|.-...+
T Consensus        19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~-~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~E   85 (517)
T PRK15317         19 RPIELVASLD-DSEKSAELKELLEEIAS-LSDKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHE   85 (517)
T ss_pred             CCEEEEEEeC-CCchHHHHHHHHHHHHH-hCCceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHH
Confidence            4455555655 79999998888888875 4456666442211           34799999876543 378999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEE
Q psy17502        113 IIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL  191 (461)
Q Consensus       113 i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f  191 (461)
                      +..|+...+.-.             .+-..|+++..+.. .+ +++..+-.|.++.|++|......+.++|... +.+.+
T Consensus        86 f~s~i~~i~~~~-------------~~~~~l~~~~~~~i-~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~  150 (517)
T PRK15317         86 FTSLVLALLQVG-------------GHPPKLDQEVIEQI-KALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITH  150 (517)
T ss_pred             HHHHHHHHHHhc-------------CCCCCCCHHHHHHH-HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceE
Confidence            999998875321             11234555554443 33 3456688999999999999999999998754 58999


Q ss_pred             EEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       192 ~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      -.+|....++++++|++.++|++++  ++      ...+.|..+.+++.+.+...
T Consensus       151 ~~id~~~~~~~~~~~~v~~VP~~~i--~~------~~~~~g~~~~~~~~~~~~~~  197 (517)
T PRK15317        151 TMIDGALFQDEVEARNIMAVPTVFL--NG------EEFGQGRMTLEEILAKLDTG  197 (517)
T ss_pred             EEEEchhCHhHHHhcCCcccCEEEE--CC------cEEEecCCCHHHHHHHHhcc
Confidence            9999999999999999999999976  22      24578888889888888654

>KOG2501|consensus

Probab=98.60  E-value=7.7e-08  Score=77.80  Aligned_cols=66  Identities=27%  Similarity=0.464  Sum_probs=56.5

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc---eEEEEEecCCch-------------------------hhHhhc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV---VKVGAVNADEEK-------------------------SLSSSH   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~---v~~~~vd~~~~~-------------------------~l~~~~   84 (461)
                      .++.+.++|.|.||++||+|.|.+.+..++++..   +.++.|+.+.+.                         +++++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            4589999999999999999999999999988765   777777776543                         388899


Q ss_pred             CCCCccEEEEEc-CC
Q psy17502         85 GVTGFPTVKIFS-DK   98 (461)
Q Consensus        85 ~i~~~P~l~~~~-~g   98 (461)
                      +|.++|++.+.. +|
T Consensus       112 ~v~~iP~l~i~~~dG  126 (157)
T KOG2501|consen  112 EVKGIPALVILKPDG  126 (157)
T ss_pred             ccCcCceeEEecCCC
Confidence            999999999987 55

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.60  E-value=2.1e-07  Score=90.75  Aligned_cols=100  Identities=23%  Similarity=0.411  Sum_probs=80.3

Q ss_pred             eEcCcc-chhHHHhcCCC--eEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCc----hhhHhhcCCCC
Q psy17502         19 IKLTTS-NFDDKVIKSDE--VWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEE----KSLSSSHGVTG   88 (461)
Q Consensus        19 ~~l~~~-~f~~~~~~~~~--~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~----~~l~~~~~i~~   88 (461)
                      ..++.. ..++ .+.+++  ++++.|||+||-.||.+.+..   .+++.++.+ +.+.++|.+++    .++-++||+-+
T Consensus       457 q~~s~~~~L~~-~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G  534 (569)
T COG4232         457 QPISPLAELDQ-ALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFG  534 (569)
T ss_pred             hccCCHHHHHH-HHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCC
Confidence            444444 6666 666666  999999999999999988755   334444444 89999998864    46889999999


Q ss_pred             ccEEEEEc-CCCCCccccCCcchhHHHHHHHHH
Q psy17502         89 FPTVKIFS-DKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        89 ~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      .|++++|. +|+.+....|..+.+.+.+++++.
T Consensus       535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence            99999999 777777799999999999999875

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.59  E-value=5.2e-07  Score=71.73  Aligned_cols=102  Identities=11%  Similarity=0.137  Sum_probs=80.4

Q ss_pred             eEcChhhhhhhhhcCCCeEEEEEeC--CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        141 VELTDSNFEKLVYNSDDIWLVEFFA--PWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       141 ~~l~~~~~~~~~~~~~~~~~v~f~~--~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ..++..+++.++ ......++.|-.  ..++.+....-++.++++.+.+ ++.|+.+|++.+++++.+|||.++||+++|
T Consensus        20 ~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F   98 (132)
T PRK11509         20 TPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVF   98 (132)
T ss_pred             CccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence            355667787765 444444444432  2344556677799999999974 599999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|    .......|..+.+.+.+||.+..
T Consensus        99 kdG----k~v~~i~G~~~k~~l~~~I~~~L  124 (132)
T PRK11509         99 TGG----NYRGVLNGIHPWAELINLMRGLV  124 (132)
T ss_pred             ECC----EEEEEEeCcCCHHHHHHHHHHHh
Confidence            999    46667889999999999998765

>TIGR02740 TraF-like TraF-like protein

Probab=98.55  E-value=3.8e-07  Score=83.40  Aligned_cols=91  Identities=19%  Similarity=0.184  Sum_probs=69.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc---------cHhhhhhcCcccccEEEEEcCCCCCCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV---------HQRIAGEFNIRGYPTIKFFSPGSRSAS  225 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~---------~~~l~~~~~i~~~P~i~~~~~~~~~~~  225 (461)
                      .+++++|.||++||++|+.+.+.+.++++.+.-.+..+.+|...         +..+++++||.++|+++++.++++  .
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~--~  242 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN--Q  242 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC--E
Confidence            36789999999999999999999999999985334444444321         356889999999999999997321  1


Q ss_pred             CcccccCCCCHHHHHHHHHhhc
Q psy17502        226 DAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       226 ~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ......|..+.+.|.+.+....
T Consensus       243 v~~v~~G~~s~~eL~~~i~~~a  264 (271)
T TIGR02740       243 FTPIGFGVMSADELVDRILLAA  264 (271)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHh
Confidence            2233558899999998887644

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.52  E-value=5.7e-07  Score=79.91  Aligned_cols=89  Identities=13%  Similarity=0.096  Sum_probs=67.9

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c----hhhH-hhcCC-------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E----KSLS-SSHGV-------------   86 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~----~~l~-~~~~i-------------   86 (461)
                      .+++++|.||++||+.|+...|++.+++++++++ +.++.|+++.       .    .+.+ +++++             
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            4589999999999999999999999999999764 8888888741       1    1222 23221             


Q ss_pred             ---------------------CCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         87 ---------------------TGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        87 ---------------------~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                                           ++.|+.+++. +|+.+.+|.|..+.++|...|++.+
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence                                 2347777776 7777888999998888888887664

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.50  E-value=7.9e-07  Score=66.51  Aligned_cols=76  Identities=18%  Similarity=0.206  Sum_probs=62.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCC
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR  234 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~  234 (461)
                      .+++-+..|+++||++|....+.+.+++... +++.+..+|.+..++++.+|+|.+.|++++  +|      ...+.|..
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG------~~~~~G~~   81 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NG------ELFGFGRM   81 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CC------EEEEeCCC
Confidence            3566788899999999999999999999776 579999999999999999999999999975  44      23345765


Q ss_pred             CHHHH
Q psy17502        235 TSQDI  239 (461)
Q Consensus       235 ~~~~i  239 (461)
                      +.+++
T Consensus        82 ~~~e~   86 (89)
T cd03026          82 TLEEI   86 (89)
T ss_pred             CHHHH
Confidence            65554

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.50  E-value=6e-07  Score=74.71  Aligned_cols=77  Identities=26%  Similarity=0.458  Sum_probs=61.5

Q ss_pred             CCCeEEEEEECC-CCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCch---------------------hhHhhcCCC--
Q psy17502         33 SDEVWIVEYYAP-WCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEK---------------------SLSSSHGVT--   87 (461)
Q Consensus        33 ~~~~~lv~f~~~-~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~---------------------~l~~~~~i~--   87 (461)
                      .+++++|.||+. ||++|+..+|.+.++++.++++ +.++.|..+.++                     .+.+++++.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            577899999999 9999999999999999887653 777777766543                     378889988  


Q ss_pred             -------CccEEEEEc-CCCCCccccCCcc
Q psy17502         88 -------GFPTVKIFS-DKRNPTPYQGART  109 (461)
Q Consensus        88 -------~~P~l~~~~-~g~~~~~y~g~~~  109 (461)
                             ++|+++++. +|+....+.|...
T Consensus       107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence                   999988876 6655555666555

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.48  E-value=8.6e-07  Score=87.49  Aligned_cols=89  Identities=20%  Similarity=0.292  Sum_probs=71.0

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEE----------------------------eCcccHhhh
Q psy17502        153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAV----------------------------DATVHQRIA  203 (461)
Q Consensus       153 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v----------------------------~~~~~~~l~  203 (461)
                      ++.+++++|.|+++||++|+...|.+.++++.++ +.+.+..|                            .++.+..++
T Consensus        53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la  132 (521)
T PRK14018         53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA  132 (521)
T ss_pred             ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence            4577899999999999999999999999999886 34555433                            234456788


Q ss_pred             hhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502        204 GEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       204 ~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~  244 (461)
                      +.|+|.++|+++++.+.+   .....+.|..+.+.|..+|.
T Consensus       133 k~fgV~giPTt~IIDkdG---kIV~~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        133 QSLNISVYPSWAIIGKDG---DVQRIVKGSISEAQALALIR  170 (521)
T ss_pred             HHcCCCCcCeEEEEcCCC---eEEEEEeCCCCHHHHHHHHH
Confidence            899999999997775432   35567889999999999987

>KOG1672|consensus

Probab=98.48  E-value=2e-07  Score=77.02  Aligned_cols=90  Identities=19%  Similarity=0.275  Sum_probs=78.2

Q ss_pred             ceEcC-ccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         18 VIKLT-TSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        18 v~~l~-~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      ..++. +.+|.+ +.....-+++.||.|.-.+|+-+-.+++.+|+.+-+ ..|++||+.+.|-|+.+++|+.+|++.+|.
T Consensus        68 y~ev~~Ekdf~~-~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l~k  145 (211)
T KOG1672|consen   68 YEEVASEKDFFE-EVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVALFK  145 (211)
T ss_pred             EEEeccHHHHHH-HhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEEEE
Confidence            34444 778888 677888899999999999999999999999998866 899999999999999999999999999999


Q ss_pred             CCCCCccccCCcc
Q psy17502         97 DKRNPTPYQGART  109 (461)
Q Consensus        97 ~g~~~~~y~g~~~  109 (461)
                      +|.....+-|-..
T Consensus       146 ~g~~~D~iVGF~d  158 (211)
T KOG1672|consen  146 NGKTVDYVVGFTD  158 (211)
T ss_pred             cCEEEEEEeeHhh
Confidence            9977666666433

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.47  E-value=1.1e-06  Score=76.25  Aligned_cols=85  Identities=14%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe-------------c-----CCchhhHhhcCCCCccEEEE
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN-------------A-----DEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd-------------~-----~~~~~l~~~~~i~~~P~l~~   94 (461)
                      .+++++|+||++||+.|+...|.+.++.++...++.++..|             .     ....++++.|++.++|+.++
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l  152 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL  152 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence            56799999999999999999999999987654344443311             0     01345778899999999888


Q ss_pred             Ec-CCCCCccccCC-cchhHHHHHHHH
Q psy17502         95 FS-DKRNPTPYQGA-RTADAIIDVALE  119 (461)
Q Consensus        95 ~~-~g~~~~~y~g~-~~~~~i~~~i~~  119 (461)
                      +. +| .+ .+.|. ...+.+.+.+..
T Consensus       153 ID~~G-~I-~~~g~~~~~~~le~ll~~  177 (189)
T TIGR02661       153 LDQDG-KI-RAKGLTNTREHLESLLEA  177 (189)
T ss_pred             ECCCC-eE-EEccCCCCHHHHHHHHHH
Confidence            87 55 33 34454 344555555543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.47  E-value=8.1e-07  Score=70.73  Aligned_cols=73  Identities=33%  Similarity=0.606  Sum_probs=64.3

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-CchhhHhhcC--CCCccEEEEEcCCCCCccccC
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-EEKSLSSSHG--VTGFPTVKIFSDKRNPTPYQG  106 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-~~~~l~~~~~--i~~~P~l~~~~~g~~~~~y~g  106 (461)
                      ++++++.||++||++|+.+.|.+.++++++...+.+..+|.. ..+++...++  +..+|++.++.++.....+.|
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  107 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG  107 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence            678999999999999999999999999999877899999997 7899999999  999999998887765444454

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.47  E-value=1.4e-05  Score=80.90  Aligned_cols=180  Identities=13%  Similarity=0.195  Sum_probs=131.0

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCC-CCccccCCcchh
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKR-NPTPYQGARTAD  111 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~-~~~~y~g~~~~~  111 (461)
                      ++++.|+.|.. .|..|..+..-+++++. +.+++.+...+...          ...|++.+..+|+ .-.+|.|.-...
T Consensus        18 ~~~v~~~~~~~-~~~~~~~~~~~~~~~~~-~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~   85 (515)
T TIGR03140        18 ENPVTLVLSAG-SHEKSKELLELLDEIAS-LSDKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGH   85 (515)
T ss_pred             CCCEEEEEEeC-CCchhHHHHHHHHHHHH-hCCCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcH
Confidence            34455666666 68999988887777775 45667775444221          3469999987654 347899999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEE
Q psy17502        112 AIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL  191 (461)
Q Consensus       112 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f  191 (461)
                      ++..|+.....-.             .+-..|+++..+....-+.+..+-.|.++.|++|......+.+++... +.+..
T Consensus        86 Ef~s~i~~i~~~~-------------~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~  151 (515)
T TIGR03140        86 EFTSLVLAILQVG-------------GHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISH  151 (515)
T ss_pred             HHHHHHHHHHHhc-------------CCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceE
Confidence            9999998865321             112345555554432123456688899999999999888998888775 47888


Q ss_pred             EEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       192 ~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      -.+|....++++++|++.++|++++  ++      ...+.|..+.+++.+-+...
T Consensus       152 ~~id~~~~~~~~~~~~v~~VP~~~i--~~------~~~~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       152 TMIDGALFQDEVEALGIQGVPAVFL--NG------EEFHNGRMDLAELLEKLEET  198 (515)
T ss_pred             EEEEchhCHHHHHhcCCcccCEEEE--CC------cEEEecCCCHHHHHHHHhhc
Confidence            8899999999999999999999987  22      24577888888887777554

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.46  E-value=9.1e-07  Score=77.30  Aligned_cols=89  Identities=9%  Similarity=0.175  Sum_probs=65.4

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c----hhhHhhcCCC-------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E----KSLSSSHGVT-------------   87 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~----~~l~~~~~i~-------------   87 (461)
                      .+++++|.|||+||+.|++.+|.+.+++++++++ +.++.|+|++       .    ...++++++.             
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~  117 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN  117 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence            4679999999999999999999999999999764 8888898741       1    2344444431             


Q ss_pred             -----------------------Ccc---EEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         88 -----------------------GFP---TVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        88 -----------------------~~P---~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                                             .+|   +.+++. +|....++.|..+.+.+...|...+
T Consensus       118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll  178 (199)
T PTZ00056        118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELL  178 (199)
T ss_pred             cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence                                   112   344554 7777778888888888877777654

>PLN02412 probable glutathione peroxidase

Probab=98.45  E-value=8.5e-07  Score=75.36  Aligned_cols=89  Identities=15%  Similarity=0.106  Sum_probs=66.1

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c-hh----hHhhcC--------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E-KS----LSSSHG--------------   85 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~-~~----l~~~~~--------------   85 (461)
                      .+++++|.||++||+.|+...|.+.+++++++++ +.++.|+++.       . .+    ++++++              
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~  107 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK  107 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence            4589999999999999999999999999999864 8888888742       1 11    123322              


Q ss_pred             --------------------CCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         86 --------------------VTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        86 --------------------i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                                          |.+.|+.+++. +|+....+.|..+.+++...|...+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l  164 (167)
T PLN02412        108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL  164 (167)
T ss_pred             CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence                                33346666664 6666777888888888888877765

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.44  E-value=3.5e-06  Score=65.16  Aligned_cols=96  Identities=18%  Similarity=0.338  Sum_probs=74.8

Q ss_pred             eeEc-Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        140 VVEL-TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       140 v~~l-~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      +..+ +.+++++++ . .+.+++|+|+...   .......|.++|..+++.+.|+..   .+.++...+++. .|+++++
T Consensus         2 v~~i~~~~~~e~~~-~~~~~~~Vvg~f~~~---~~~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~~~i~l~   73 (102)
T cd03066           2 VEIINSERELQAFE-NIEDDIKLIGYFKSE---DSEHYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-MNEVDFY   73 (102)
T ss_pred             ceEcCCHHHHHHHh-cccCCeEEEEEECCC---CCHHHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-CCcEEEe
Confidence            3455 556677765 6 6888999999864   346788999999999999999875   456777888887 5999999


Q ss_pred             cCCCCCCcCcccc-cCCCCHHHHHHHHHhh
Q psy17502        218 SPGSRSASDAQEY-NGGRTSQDIVTWALNK  246 (461)
Q Consensus       218 ~~~~~~~~~~~~y-~g~~~~~~i~~fi~~~  246 (461)
                      ++..   +....| .|..+.+.|.+||..+
T Consensus        74 ~~~~---e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          74 EPFM---EEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCC---CCCcccCCCCCCHHHHHHHHHHh
Confidence            8742   355679 8889999999999764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>KOG0913|consensus

Probab=98.41  E-value=1.1e-07  Score=81.12  Aligned_cols=101  Identities=30%  Similarity=0.652  Sum_probs=89.7

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      .++.++++++...+   ..-+++.|+++||+.|+...+.|.+.|.--.+ .+..+.||.+.++-|.-+|-+...|+|+-.
T Consensus        25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv  101 (248)
T KOG0913|consen   25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV  101 (248)
T ss_pred             eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence            57788999998875   34589999999999999999999998875544 699999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|     +.-+|.|.++.+++++|+..+-
T Consensus       102 kDG-----eFrrysgaRdk~dfisf~~~r~  126 (248)
T KOG0913|consen  102 KDG-----EFRRYSGARDKNDFISFEEHRE  126 (248)
T ss_pred             ecc-----ccccccCcccchhHHHHHHhhh
Confidence            998     8899999999999999997664

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.41  E-value=2.3e-06  Score=73.51  Aligned_cols=88  Identities=14%  Similarity=0.313  Sum_probs=71.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc----------------------cHhhhhhcCcccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV----------------------HQRIAGEFNIRGY  211 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~----------------------~~~l~~~~~i~~~  211 (461)
                      .+++++|.|+++||+.|+...+.+.++++.+.+ .+.+..++++.                      +..+++.|++...
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  139 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence            467899999999999999999999999999875 47787777542                      3567889999999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      |+++++.+++   .....+.|..+.+++.+++.+
T Consensus       140 P~~~lid~~g---~i~~~~~g~~~~~~l~~~l~~  170 (173)
T PRK03147        140 PTTFLIDKDG---KVVKVITGEMTEEQLEEYLEK  170 (173)
T ss_pred             CeEEEECCCC---cEEEEEeCCCCHHHHHHHHHH
Confidence            9999997653   244567899999999988864

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.41  E-value=8.4e-07  Score=64.09  Aligned_cols=68  Identities=16%  Similarity=0.404  Sum_probs=52.2

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEEEcCCCCCccccCCcchhHH
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI  113 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i  113 (461)
                      +..|+++||++|+.+.+.+.+      ..+.+..+|.++++.    +++++++.++|++++.  |+   ...| .+.+.|
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~---~~~g-~~~~~i   69 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK---IIVG-FDPEKL   69 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE---EEee-CCHHHH
Confidence            578999999999999887765      237888999987654    5677999999999985  32   2555 466777


Q ss_pred             HHHH
Q psy17502        114 IDVA  117 (461)
Q Consensus       114 ~~~i  117 (461)
                      .+|+
T Consensus        70 ~~~i   73 (74)
T TIGR02196        70 DQLL   73 (74)
T ss_pred             HHHh
Confidence            7765

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.39  E-value=2.8e-06  Score=70.47  Aligned_cols=89  Identities=16%  Similarity=0.206  Sum_probs=62.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc----------cHhhh-hhc---CcccccEEEEEcCC
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV----------HQRIA-GEF---NIRGYPTIKFFSPG  220 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~----------~~~l~-~~~---~i~~~P~i~~~~~~  220 (461)
                      ..+..+|.||++||++|+...|.+.+++++++-.+....+|...          ..... ..+   ++.++|+.+++.+.
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~  128 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN  128 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence            34567999999999999999999999999885334334444211          12232 344   78899999999864


Q ss_pred             CCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        221 SRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       221 ~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      ++  .....+.|..+.+++.+.+..
T Consensus       129 G~--~i~~~~~G~~s~~~l~~~I~~  151 (153)
T TIGR02738       129 TR--KAYPVLQGAVDEAELANRMDE  151 (153)
T ss_pred             CC--EEEEEeecccCHHHHHHHHHH
Confidence            21  123357899999988877654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>KOG0911|consensus

Probab=98.38  E-value=3.7e-06  Score=71.79  Aligned_cols=174  Identities=18%  Similarity=0.282  Sum_probs=113.3

Q ss_pred             cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchh
Q psy17502         32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTAD  111 (461)
Q Consensus        32 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~  111 (461)
                      +..+..++.|+++||..|+++...++.+++.. .+..|++++.+..++++..+.+...|.+.++..|....+..|.....
T Consensus        15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~   93 (227)
T KOG0911|consen   15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF   93 (227)
T ss_pred             hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence            36778999999999999999999999999988 56999999999999999999999999999998888888888877666


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCCCCCCCceeEc-------ChhhhhhhhhcCCCeEEEEEe-----CCCChhhhhhhHHHH
Q psy17502        112 AIIDVALEAIRQKVKGGKSGGRKGSSKAVVEL-------TDSNFEKLVYNSDDIWLVEFF-----APWCGHCKNLEPHWE  179 (461)
Q Consensus       112 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l-------~~~~~~~~~~~~~~~~~v~f~-----~~~c~~c~~~~~~~~  179 (461)
                      ....+-....... .    ......++.+...       .....++.+ +. + .++.|-     .|.||.++.+..+++
T Consensus        94 ~~~~~~~~~~~~~-~----~~~~~~~~~~~e~~~~~~~~~~~~l~~lv-~a-~-~v~lFmKG~p~~P~CGFS~~~v~iL~  165 (227)
T KOG0911|consen   94 LVSKVEKLAESGS-A----SLGMGLSTTIRETQTTNETDLDNRLEKLV-KA-K-PVMLFMKGTPEEPKCGFSRQLVGILQ  165 (227)
T ss_pred             HHHHHHHhhhhcc-c----ccCCCCCcchhcccccchhhHHHHHHHhc-cc-C-eEEEEecCCCCcccccccHHHHHHHH
Confidence            5554443332111 0    0011111112111       011223222 22 2 334444     367887766665554


Q ss_pred             HHHHHhcCceEEEEEeCcccHhhhhhcC-cccccEE-EEEcCC
Q psy17502        180 KAASELEGKVKLGAVDATVHQRIAGEFN-IRGYPTI-KFFSPG  220 (461)
Q Consensus       180 ~~a~~~~~~i~f~~v~~~~~~~l~~~~~-i~~~P~i-~~~~~~  220 (461)
                      +.      .+.|..+|+-+++++.+..+ ...+||+ -+|-+|
T Consensus       166 ~~------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~G  202 (227)
T KOG0911|consen  166 SH------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKG  202 (227)
T ss_pred             Hc------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECC
Confidence            42      45688888888888765443 2223444 344455

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.37  E-value=2.6e-06  Score=65.01  Aligned_cols=65  Identities=23%  Similarity=0.511  Sum_probs=51.7

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCcccH-------------------------hhhhhcCc
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATVHQ-------------------------RIAGEFNI  208 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~~~-------------------------~l~~~~~i  208 (461)
                      +++++|.|+++||++|....+.+.++.+.++  +.+.|..|..+.+.                         .+.+.|++
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            4789999999999999999999999999998  67888888765432                         36677888


Q ss_pred             ccccEEEEEcCC
Q psy17502        209 RGYPTIKFFSPG  220 (461)
Q Consensus       209 ~~~P~i~~~~~~  220 (461)
                      .+.|+++++.+.
T Consensus        81 ~~iP~~~lld~~   92 (95)
T PF13905_consen   81 NGIPTLVLLDPD   92 (95)
T ss_dssp             TSSSEEEEEETT
T ss_pred             CcCCEEEEECCC
Confidence            888888888764

...

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=98.37  E-value=4.5e-06  Score=64.71  Aligned_cols=94  Identities=20%  Similarity=0.365  Sum_probs=71.4

Q ss_pred             ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCC--
Q psy17502        144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGS--  221 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~--  221 (461)
                      +.+++++++ ..+++++|+|+...   .......|.++|..+++.+.|+..   .+.+++..+++  .|++++|++..  
T Consensus         7 s~~~l~~f~-~~~~~~Vvg~f~~~---~~~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~--~~~ivl~~p~~~~   77 (104)
T cd03069           7 TEAEFEKFL-SDDDASVVGFFEDE---DSKLLSEFLKAADTLRESFRFAHT---SDKQLLEKYGY--GEGVVLFRPPRLS   77 (104)
T ss_pred             CHHHHHHHh-ccCCcEEEEEEcCC---CchHHHHHHHHHHhhhhcCEEEEE---ChHHHHHhcCC--CCceEEEechhhh
Confidence            455666654 67888999999874   346789999999999999999886   45677888888  48899995421  


Q ss_pred             -CCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        222 -RSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       222 -~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                       +..+....|+|+.+.++|.+||..+
T Consensus        78 ~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          78 NKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             cccCcccccccCcCCHHHHHHHHHhh
Confidence             1113456699999999999999764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.35  E-value=1.9e-06  Score=60.19  Aligned_cols=60  Identities=38%  Similarity=0.744  Sum_probs=52.0

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHh---hcCCCCccEEEEEcCC
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSS---SHGVTGFPTVKIFSDK   98 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~P~l~~~~~g   98 (461)
                      ++.|+++||++|+++.+.+.++ ......+.+..+|++......+   .+++..+|+++++..|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            5789999999999999999988 4555679999999998877665   8899999999999865

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.34  E-value=2.7e-06  Score=69.27  Aligned_cols=66  Identities=20%  Similarity=0.420  Sum_probs=52.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCccc------------------------HhhhhhcC
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVH------------------------QRIAGEFN  207 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~------------------------~~l~~~~~  207 (461)
                      .+++++|.|+++||++|+...+.+.++++.+++   .+.+..++.+..                        ..++++|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            357899999999999999999999999888863   355554443321                        35778899


Q ss_pred             cccccEEEEEcCC
Q psy17502        208 IRGYPTIKFFSPG  220 (461)
Q Consensus       208 i~~~P~i~~~~~~  220 (461)
                      +.++|+++++.+.
T Consensus        97 v~~~P~~~lid~~  109 (131)
T cd03009          97 IEGIPTLIILDAD  109 (131)
T ss_pred             CCCCCEEEEECCC
Confidence            9999999999855

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.30  E-value=7.4e-06  Score=62.98  Aligned_cols=102  Identities=25%  Similarity=0.357  Sum_probs=76.4

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHH-HHcC--CceEEEEEecC-----CchhhHhhcCC--
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA-TALK--GVVKVGAVNAD-----EEKSLSSSHGV--   86 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a-~~~~--~~v~~~~vd~~-----~~~~l~~~~~i--   86 (461)
                      ..+.|+.-+|++ ++...+.+||.|=..  -+--.-+.+|.++| +...  .++.++.|-..     ++.+|+++|++  
T Consensus         5 G~v~LD~~tFdK-vi~kf~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    5 GCVPLDELTFDK-VIPKFKYVLVKFDVA--YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             TSEEESTTHHHH-HGGGSSEEEEEEEES--S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             ceeeccceehhh-eeccCceEEEEEecc--CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            468999999999 899999999999632  22233466788888 4333  35899999875     35789999999  


Q ss_pred             CCccEEEEEc-CCCCCccc--cCCcchhHHHHHHHHHH
Q psy17502         87 TGFPTVKIFS-DKRNPTPY--QGARTADAIIDVALEAI  121 (461)
Q Consensus        87 ~~~P~l~~~~-~g~~~~~y--~g~~~~~~i~~~i~~~~  121 (461)
                      +.+|.+++|. +...+.+|  .|..+.+.|..|+..+.
T Consensus        82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t  119 (126)
T PF07912_consen   82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT  119 (126)
T ss_dssp             CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred             ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence            5699999998 44667778  89999999999999874

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.29  E-value=4e-06  Score=68.39  Aligned_cols=66  Identities=20%  Similarity=0.444  Sum_probs=52.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCccc-------------------------Hhhhhhc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVH-------------------------QRIAGEF  206 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~-------------------------~~l~~~~  206 (461)
                      .+++++|.|+++||++|+...+.+.++++.+++   .+.+..++.+..                         ..+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            368999999999999999999999999988874   355555544322                         2456679


Q ss_pred             CcccccEEEEEcCC
Q psy17502        207 NIRGYPTIKFFSPG  220 (461)
Q Consensus       207 ~i~~~P~i~~~~~~  220 (461)
                      ++.++|+++++...
T Consensus        96 ~v~~iPt~~lid~~  109 (132)
T cd02964          96 KVEGIPTLVVLKPD  109 (132)
T ss_pred             CCCCCCEEEEECCC
Confidence            99999999999755

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.29  E-value=3.3e-06  Score=68.38  Aligned_cols=80  Identities=16%  Similarity=0.295  Sum_probs=58.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe-----------------------CcccHhhhhhcCcccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD-----------------------ATVHQRIAGEFNIRGY  211 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~-----------------------~~~~~~l~~~~~i~~~  211 (461)
                      .+++++|.|+++||+.|....+.+.++++.+.  +.+..|+                       ++....+++.|++.+.
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~  101 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV  101 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence            36789999999999999999999999987762  4444443                       2345567888999999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHH
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDI  239 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i  239 (461)
                      |+.+++.+.+   .....+.|..+.+.|
T Consensus       102 P~~~~ld~~G---~v~~~~~G~~~~~~~  126 (127)
T cd03010         102 PETFLIDGDG---IIRYKHVGPLTPEVW  126 (127)
T ss_pred             CeEEEECCCc---eEEEEEeccCChHhc
Confidence            9776665432   245667788776643

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.28  E-value=4e-06  Score=71.30  Aligned_cols=80  Identities=13%  Similarity=0.095  Sum_probs=62.4

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEE------EEEecCCc-----------------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV------GAVNADEE-----------------------------   77 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~------~~vd~~~~-----------------------------   77 (461)
                      .+++.+|.|||.||++|+.-+|.+++++.+   .+.+      ..||.++.                             
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~  134 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK  134 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence            478999999999999999999999999653   1334      55565542                             


Q ss_pred             hhhHhhcCCCCccEE-EEEc-CCCCCccccCCcchhHHHH
Q psy17502         78 KSLSSSHGVTGFPTV-KIFS-DKRNPTPYQGARTADAIID  115 (461)
Q Consensus        78 ~~l~~~~~i~~~P~l-~~~~-~g~~~~~y~g~~~~~~i~~  115 (461)
                      ..+...+++.++|+. +++. +|+....+.|..+.+++.+
T Consensus       135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~  174 (184)
T TIGR01626       135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT  174 (184)
T ss_pred             chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence            135667899999876 6666 7777788899999888877

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.28  E-value=1.1e-05  Score=63.17  Aligned_cols=101  Identities=16%  Similarity=0.186  Sum_probs=82.0

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHH---cCCceEEEEEecCCchhhHhhcCCCC--ccEE
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATA---LKGVVKVGAVNADEEKSLSSSHGVTG--FPTV   92 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~---~~~~v~~~~vd~~~~~~l~~~~~i~~--~P~l   92 (461)
                      |.++|.+|+.. +....-+..++|+  .-..-..+...+.++|++   +++++.|+.+|.++.....+.+|++.  .|.+
T Consensus         1 ~~e~t~e~~~~-~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i   77 (111)
T cd03072           1 VREITFENAEE-LTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVI   77 (111)
T ss_pred             CcccccccHHH-HhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence            56789999998 7777777776777  333346789999999999   99999999999999888999999997  9999


Q ss_pred             EEEcCCC-CCcc-ccCCcchhHHHHHHHHHH
Q psy17502         93 KIFSDKR-NPTP-YQGARTADAIIDVALEAI  121 (461)
Q Consensus        93 ~~~~~g~-~~~~-y~g~~~~~~i~~~i~~~~  121 (461)
                      .+..... .... +.+..+.+.|.+|+....
T Consensus        78 ~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~  108 (111)
T cd03072          78 AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH  108 (111)
T ss_pred             EEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence            9987422 2233 568899999999999875

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.25  E-value=4.9e-06  Score=65.74  Aligned_cols=65  Identities=28%  Similarity=0.563  Sum_probs=57.3

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCccc-----------------------HhhhhhcCcccc
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATVH-----------------------QRIAGEFNIRGY  211 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~~-----------------------~~l~~~~~i~~~  211 (461)
                      ++++++.|+++||+.|+...+.+.++.+.+. ..+.++.++.+..                       ..+.+.|++.+.
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL   98 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence            6789999999999999999999999999886 4688999888765                       678889999999


Q ss_pred             cEEEEEcCC
Q psy17502        212 PTIKFFSPG  220 (461)
Q Consensus       212 P~i~~~~~~  220 (461)
                      |+++++.+.
T Consensus        99 P~~~l~d~~  107 (116)
T cd02966          99 PTTFLIDRD  107 (116)
T ss_pred             ceEEEECCC
Confidence            999999755

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.25  E-value=4.8e-06  Score=73.35  Aligned_cols=82  Identities=18%  Similarity=0.200  Sum_probs=65.6

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-----------CchhhHhhcCCCCccEEEEEcCCC-C
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-----------EEKSLSSSHGVTGFPTVKIFSDKR-N  100 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-----------~~~~l~~~~~i~~~P~l~~~~~g~-~  100 (461)
                      .++..|++||.+.|+.|+.+.|.+..++++++  +.+..|+.|           .+..+++++||..+|++++...+. .
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~  196 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK  196 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence            46789999999999999999999999999985  455555554           357899999999999999998432 3


Q ss_pred             Cc-cccCCcchhHHHHH
Q psy17502        101 PT-PYQGARTADAIIDV  116 (461)
Q Consensus       101 ~~-~y~g~~~~~~i~~~  116 (461)
                      .. .-.|..+.++|.+-
T Consensus       197 ~~pv~~G~~s~~~L~~r  213 (215)
T PF13728_consen  197 WYPVSQGFMSLDELEDR  213 (215)
T ss_pred             EEEEeeecCCHHHHHHh
Confidence            33 34788998888764

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.25  E-value=1.1e-05  Score=69.16  Aligned_cols=89  Identities=16%  Similarity=0.211  Sum_probs=66.3

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc-------h----------------------hhHh
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE-------K----------------------SLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~-------~----------------------~l~~   82 (461)
                      .++++||+||++||+.|....+++.++++++.+ ++.++.|+++..       +                      .+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            567999999999999999999999999999974 588888887531       1                      3677


Q ss_pred             hcCCCCccEEEEEc-CCCCCccc---------cCCcchhHHHHHHHHHH
Q psy17502         83 SHGVTGFPTVKIFS-DKRNPTPY---------QGARTADAIIDVALEAI  121 (461)
Q Consensus        83 ~~~i~~~P~l~~~~-~g~~~~~y---------~g~~~~~~i~~~i~~~~  121 (461)
                      .|++...|+++++. +|+.....         .+..+..++.+.|...+
T Consensus       104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  152 (171)
T cd02969         104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALL  152 (171)
T ss_pred             HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHH
Confidence            88999999999997 55332111         12234566777776665

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.24  E-value=2.8e-06  Score=71.13  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=37.0

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNAD   75 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~   75 (461)
                      .+++++|.||+.||+ |+...|.++++++++++ .+.+..|+++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            368999999999999 99999999999999975 4888888764

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.24  E-value=7.9e-06  Score=65.70  Aligned_cols=81  Identities=22%  Similarity=0.335  Sum_probs=60.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe---------------------CcccHhhhhhcCcccccE
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD---------------------ATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~---------------------~~~~~~l~~~~~i~~~P~  213 (461)
                      .+++++|.|+++||+.|....+.+.++++.+.  +....++                     .+.+..+++.|++.+.|+
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~   96 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA   96 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence            34789999999999999999999998887642  1111111                     134457899999999999


Q ss_pred             EEEEcCCCCCCcCcccccCCCCHHHHHH
Q psy17502        214 IKFFSPGSRSASDAQEYNGGRTSQDIVT  241 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~  241 (461)
                      ++++.++    .....+.|..+.+.|.+
T Consensus        97 ~~vid~~----gi~~~~~g~~~~~~~~~  120 (123)
T cd03011          97 IVIVDPG----GIVFVTTGVTSEWGLRL  120 (123)
T ss_pred             EEEEcCC----CeEEEEeccCCHHHHHh
Confidence            9999877    34445678888887653

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.24  E-value=2.4e-05  Score=63.12  Aligned_cols=108  Identities=15%  Similarity=0.275  Sum_probs=83.3

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECC--CCHh-H-HhhHHHHHHHHHHcCCc-eEEEEEecCCchhhHhhcCCC--Cc
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAP--WCGH-C-QSFKDEYMKLATALKGV-VKVGAVNADEEKSLSSSHGVT--GF   89 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~--~c~~-C-~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~~i~--~~   89 (461)
                      .|++|+++++.+..=.+++..+|.|...  .|.. + ..+...+.++|++++++ +.|+.+|.++...+.+.||+.  ++
T Consensus         3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~   82 (130)
T cd02983           3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY   82 (130)
T ss_pred             ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence            6889998877553444566667766532  1332 3 45788999999999999 999999999999999999995  49


Q ss_pred             cEEEEEcCCC-CCccccCCcchhHHHHHHHHHHhhh
Q psy17502         90 PTVKIFSDKR-NPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        90 P~l~~~~~g~-~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      |+++++...+ +...+.|..+.+.|.+|+...+...
T Consensus        83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk  118 (130)
T cd02983          83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR  118 (130)
T ss_pred             CEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence            9999998433 3333779999999999999998543

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.23  E-value=7e-06  Score=67.28  Aligned_cols=66  Identities=18%  Similarity=0.343  Sum_probs=51.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--------ceEEEEEeCccc-------------------------Hh
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--------KVKLGAVDATVH-------------------------QR  201 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--------~i~f~~v~~~~~-------------------------~~  201 (461)
                      .+++++|.|+|+||++|+...|.+.++++.+++        .+.+..|+.+.+                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            468999999999999999999999998876643        356666554321                         24


Q ss_pred             hhhhcCcccccEEEEEcCC
Q psy17502        202 IAGEFNIRGYPTIKFFSPG  220 (461)
Q Consensus       202 l~~~~~i~~~P~i~~~~~~  220 (461)
                      ++.+|++.++|+.+++...
T Consensus       104 l~~~y~v~~iPt~vlId~~  122 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPD  122 (146)
T ss_pred             HHHHcCCCCCCEEEEECCC
Confidence            6778889899999999865

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.21  E-value=5.7e-06  Score=69.37  Aligned_cols=42  Identities=21%  Similarity=0.154  Sum_probs=37.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEec
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNA   74 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~   74 (461)
                      .+++++|.||++||++|+...|.+.++++++++ .+.+..|+|
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~   63 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC   63 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence            457899999999999999999999999999975 488888886

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.21  E-value=1.6e-05  Score=62.94  Aligned_cols=91  Identities=15%  Similarity=0.225  Sum_probs=71.1

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhH-HHHH--HHHHhcCceEEEEEeCc--ccHhhhhhcCcccccEEEEEcC-CCCCCcC
Q psy17502        153 YNSDDIWLVEFFAPWCGHCKNLEP-HWEK--AASELEGKVKLGAVDAT--VHQRIAGEFNIRGYPTIKFFSP-GSRSASD  226 (461)
Q Consensus       153 ~~~~~~~~v~f~~~~c~~c~~~~~-~~~~--~a~~~~~~i~f~~v~~~--~~~~l~~~~~i~~~P~i~~~~~-~~~~~~~  226 (461)
                      .+.+++++|+|+++||..|+.+.. .|..  +.+.+...+.+..+|.+  +...++..|++.++|+++++.+ .+   ..
T Consensus        14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g---~~   90 (114)
T cd02958          14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTG---EV   90 (114)
T ss_pred             HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccC---cE
Confidence            466899999999999999999865 4433  55666667777777765  3567889999999999999986 32   35


Q ss_pred             cccccCCCCHHHHHHHHHhh
Q psy17502        227 AQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       227 ~~~y~g~~~~~~i~~fi~~~  246 (461)
                      .....|..+.+.+.+-+.+.
T Consensus        91 l~~~~G~~~~~~f~~~L~~~  110 (114)
T cd02958          91 LKVWSGNITPEDLLSQLIEF  110 (114)
T ss_pred             eEEEcCCCCHHHHHHHHHHH
Confidence            66778999999988877654

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.20  E-value=8.5e-06  Score=69.81  Aligned_cols=87  Identities=15%  Similarity=0.251  Sum_probs=64.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe-----------------------CcccHhhhhhcCcccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD-----------------------ATVHQRIAGEFNIRGY  211 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~-----------------------~~~~~~l~~~~~i~~~  211 (461)
                      .+++++|.||++||++|+...+.+.++++.   .+.+..++                       .+.+..+.+.|++.++
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~  138 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA  138 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence            568999999999999999999999888753   23333333                       2333456778899999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |+.+++.+.+   .....+.|..+.+++.+++...+
T Consensus       139 P~~~~id~~G---~i~~~~~G~~~~~~l~~~l~~~~  171 (173)
T TIGR00385       139 PETFLVDGNG---VILYRHAGPLNNEVWTEGFLPAM  171 (173)
T ss_pred             CeEEEEcCCc---eEEEEEeccCCHHHHHHHHHHHh
Confidence            9777775432   34556779999999999987654

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.20  E-value=1e-05  Score=59.41  Aligned_cols=95  Identities=16%  Similarity=0.230  Sum_probs=77.9

Q ss_pred             ccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC--chhhHhhcCCC----Ccc-EEEEE
Q psy17502         23 TSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE--EKSLSSSHGVT----GFP-TVKIF   95 (461)
Q Consensus        23 ~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~i~----~~P-~l~~~   95 (461)
                      .++|.+ ++.....+||+|..+.-.-- .....+.++|+..+|+-.++.|||.+  .+.||+++.|.    --| .|..|
T Consensus         9 ~KdfKK-LLRTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHY   86 (112)
T cd03067           9 HKDFKK-LLRTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHY   86 (112)
T ss_pred             hHHHHH-HHhhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcc
Confidence            478888 77777888888876543333 34568999999999999999999987  68899999998    455 47778


Q ss_pred             cCCCCCccccCCcchhHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~  119 (461)
                      ++|..-..|....+...|+.|++.
T Consensus        87 KdG~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          87 KDGDFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             cCCCccccccchhhHHHHHHHhhC
Confidence            899888899999999999999874

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.20  E-value=2.1e-05  Score=60.19  Aligned_cols=94  Identities=19%  Similarity=0.325  Sum_probs=73.8

Q ss_pred             eEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCC
Q psy17502         19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDK   98 (461)
Q Consensus        19 ~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g   98 (461)
                      ..++..+..+.++..+++++|.|+..+|+   .....|.++|+.+++.+.|+.+.   ++++++++++.. |++.+|+..
T Consensus         2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~   74 (97)
T cd02981           2 KELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPF   74 (97)
T ss_pred             eecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCc
Confidence            34545443333678889999999999988   46779999999998888998877   567888887764 899999853


Q ss_pred             -CCCccccCCcchhHHHHHHHH
Q psy17502         99 -RNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        99 -~~~~~y~g~~~~~~i~~~i~~  119 (461)
                       .....|.|..+.+.|.+|+..
T Consensus        75 ~~~~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          75 EEEPVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             ccCCccCCCCCCHHHHHHHHHh
Confidence             456779999999999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.17  E-value=1.4e-05  Score=69.20  Aligned_cols=87  Identities=9%  Similarity=0.194  Sum_probs=63.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-----------------------hhhhhcCcccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-----------------------RIAGEFNIRGY  211 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-----------------------~l~~~~~i~~~  211 (461)
                      .+++++|.|+++||++|+...|.+.++++.   .+.+..|+.+.+.                       .++..|++.+.
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~  143 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA  143 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence            578999999999999999999999888652   3555555432211                       23447889999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |+.+++.+.+   .....+.|..+.+.+.+++....
T Consensus       144 P~t~vid~~G---~i~~~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        144 PETFLIDGNG---IIRYRHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             CeEEEECCCc---eEEEEEecCCCHHHHHHHHHHHH
Confidence            9877776442   24666789999988888886543

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=98.16  E-value=2.2e-05  Score=61.01  Aligned_cols=99  Identities=16%  Similarity=0.239  Sum_probs=71.7

Q ss_pred             eeEc-ChhhhhhhhhcCC-CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        140 VVEL-TDSNFEKLVYNSD-DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       140 v~~l-~~~~~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      +..+ +.++++.++ ..+ ++++|+|+...   .......|.++|..+++.+.|+..   .+.++..++++.. |.+++|
T Consensus         2 v~~i~s~~ele~f~-~~~~~~~VVG~F~~~---~~~~~~~F~~vA~~~Rdd~~F~~t---~~~~~~~~~~~~~-~~vvl~   73 (107)
T cd03068           2 SKQLQTLKQVQEFL-RDGDDVIIIGVFSGE---EDPAYQLYQDAANSLREDYKFHHT---FDSEIFKSLKVSP-GQLVVF   73 (107)
T ss_pred             ceEcCCHHHHHHHH-hcCCCEEEEEEECCC---CCHHHHHHHHHHHhcccCCEEEEE---ChHHHHHhcCCCC-CceEEE
Confidence            3445 456677765 444 88999999874   236788999999999999999876   4567778888874 888898


Q ss_pred             cCC---CCCCcCcccccCC-CCHHH-HHHHHHhh
Q psy17502        218 SPG---SRSASDAQEYNGG-RTSQD-IVTWALNK  246 (461)
Q Consensus       218 ~~~---~~~~~~~~~y~g~-~~~~~-i~~fi~~~  246 (461)
                      ++.   .+..+....|+|. .+.++ |..|+..+
T Consensus        74 rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          74 QPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH  107 (107)
T ss_pred             CcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence            643   1222456678888 67766 99999753

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.15  E-value=5.5e-06  Score=75.06  Aligned_cols=102  Identities=18%  Similarity=0.250  Sum_probs=73.7

Q ss_pred             CCceEcCc-cchhHHHhcC---CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccE
Q psy17502         16 SDVIKLTT-SNFDDKVIKS---DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPT   91 (461)
Q Consensus        16 ~~v~~l~~-~~f~~~~~~~---~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   91 (461)
                      ..|.+|+. +.|-+ ++..   ...++|.||.+.+..|+.+...|..+|.++.. +.|++|.+...+ +..+|.+.++||
T Consensus       125 G~v~ei~~~e~~l~-~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPt  201 (265)
T PF02114_consen  125 GEVYEIDSGEEFLD-AIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPT  201 (265)
T ss_dssp             -SEEE--SHHHHHH-HCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred             ceEEEccChhhHHH-HHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCE
Confidence            46888865 77888 5543   34799999999999999999999999999876 999999988766 789999999999


Q ss_pred             EEEEcCCCCCccccC-------CcchhHHHHHHHHH
Q psy17502         92 VKIFSDKRNPTPYQG-------ARTADAIIDVALEA  120 (461)
Q Consensus        92 l~~~~~g~~~~~y~g-------~~~~~~i~~~i~~~  120 (461)
                      |++|++|..+..+-|       ..+..++..|+.++
T Consensus       202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            999999865544322       34455666666554

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.15  E-value=1.7e-05  Score=57.51  Aligned_cols=73  Identities=15%  Similarity=0.400  Sum_probs=56.7

Q ss_pred             EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccC-CcchhHHHHHH
Q psy17502         39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQG-ARTADAIIDVA  117 (461)
Q Consensus        39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g-~~~~~~i~~~i  117 (461)
                      |.+++++|++|..+...+.+++..++  +.+-.+|..+.+++ .+|||.++|++++  +|+  ..+.| ..+.+++.+|+
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l   75 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELL   75 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHh
Confidence            34478889999999999999999884  77777888666677 9999999999965  553  46888 78888888887


Q ss_pred             H
Q psy17502        118 L  118 (461)
Q Consensus       118 ~  118 (461)
                      .
T Consensus        76 ~   76 (76)
T PF13192_consen   76 E   76 (76)
T ss_dssp             H
T ss_pred             C
Confidence            4

...

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.15  E-value=4.8e-06  Score=60.69  Aligned_cols=56  Identities=29%  Similarity=0.498  Sum_probs=42.7

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhc-----CCCCccEEEEEcCCCC
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH-----GVTGFPTVKIFSDKRN  100 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~-----~i~~~P~l~~~~~g~~  100 (461)
                      ++.|+++||++|+++.+.+.+..      +.+-.+|.++++.....+     ++.++|++ ++.+|..
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~   62 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF   62 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE
Confidence            67899999999999998876542      455678888777665553     89999997 4666643

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>smart00594 UAS UAS domain

Probab=98.13  E-value=2.5e-05  Score=62.54  Aligned_cols=104  Identities=9%  Similarity=0.126  Sum_probs=72.5

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHH-HHH--HHHHhcCceEEEEEeCcc--cHhhhhhcCcccccEE
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPH-WEK--AASELEGKVKLGAVDATV--HQRIAGEFNIRGYPTI  214 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~-~~~--~a~~~~~~i~f~~v~~~~--~~~l~~~~~i~~~P~i  214 (461)
                      ...-+-++..+...++++.++|+|+++||+.|..+... |..  +.+.+...+.+..+|.+.  ...++.+|++.++|++
T Consensus        11 f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~   90 (122)
T smart00594       11 FYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYV   90 (122)
T ss_pred             eeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEE
Confidence            33344444444445677899999999999999988653 333  445555667776777653  5678999999999999


Q ss_pred             EEEcCCCCCC--cCcccccCCCCHHHHHHHH
Q psy17502        215 KFFSPGSRSA--SDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       215 ~~~~~~~~~~--~~~~~y~g~~~~~~i~~fi  243 (461)
                      .++.+.+...  .......|..+.+++..++
T Consensus        91 ~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       91 AIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            9997653110  1244678999999888765

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.11  E-value=0.0001  Score=56.83  Aligned_cols=103  Identities=17%  Similarity=0.330  Sum_probs=76.2

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHH-HHhc--CceEEEEEeCc-----ccHhhhhhcCcc-
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAA-SELE--GKVKLGAVDAT-----VHQRIAGEFNIR-  209 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a-~~~~--~~i~f~~v~~~-----~~~~l~~~~~i~-  209 (461)
                      ..+.|++-+|++.+ ...+.++|-|=... + --+-...|.++| +...  +++.+|.|-+.     .+.+|+++|++. 
T Consensus         5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay-P-yGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY-P-YGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             ceeeccceehhhee-ccCceEEEEEeccC-C-CcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            46789999999986 56688999985421 1 135578999999 4443  57999998663     378899999994 


Q ss_pred             -cccEEEEEcCCCCCCcCcccc--cCCCCHHHHHHHHHhhc
Q psy17502        210 -GYPTIKFFSPGSRSASDAQEY--NGGRTSQDIVTWALNKY  247 (461)
Q Consensus       210 -~~P~i~~~~~~~~~~~~~~~y--~g~~~~~~i~~fi~~~~  247 (461)
                       .+|.+++|..+.   +++..|  .|+.+.++|..|+..++
T Consensus        82 e~fPv~~LF~~~~---~~pv~~p~~~~~t~~~l~~fvk~~t  119 (126)
T PF07912_consen   82 EDFPVIYLFVGDK---EEPVRYPFDGDVTADNLQRFVKSNT  119 (126)
T ss_dssp             CC-SEEEEEESST---TSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred             ccCCEEEEecCCC---CCCccCCccCCccHHHHHHHHHhCC
Confidence             589999999543   477878  88999999999999875

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.11  E-value=2.1e-05  Score=70.49  Aligned_cols=89  Identities=17%  Similarity=0.217  Sum_probs=70.6

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-----------hhhHhhcCCCCccEEEEEcCC-CCC
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-----------KSLSSSHGVTGFPTVKIFSDK-RNP  101 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-----------~~l~~~~~i~~~P~l~~~~~g-~~~  101 (461)
                      ++..|++||...|++|+++.|.+..++++++  +.+..|+.|..           ..+++++||..+|++++...+ +..
T Consensus       150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~  227 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM  227 (256)
T ss_pred             hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence            4589999999999999999999999999986  55555555543           458999999999999998733 333


Q ss_pred             cc-ccCCcchhHHHHHHHHHHhhh
Q psy17502        102 TP-YQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus       102 ~~-y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      .. -.|..+.++|.+-+...+...
T Consensus       228 ~pv~~G~iS~deL~~Ri~~v~~~f  251 (256)
T TIGR02739       228 SPLAYGFISQDELKERILNVLTQF  251 (256)
T ss_pred             EEEeeccCCHHHHHHHHHHHHhcc
Confidence            33 379999999998887776443

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.10  E-value=8.9e-06  Score=60.10  Aligned_cols=66  Identities=33%  Similarity=0.541  Sum_probs=49.7

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        153 YNSDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       153 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      .+++++++|.|+++||+.|+.+...+   .++.+.+..++.+..+|.+....... +...++|+++++.+
T Consensus        14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ldp   82 (82)
T PF13899_consen   14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLDP   82 (82)
T ss_dssp             HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEET
T ss_pred             HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEeCC
Confidence            46789999999999999999998776   34555466789999999876554332 22256999999853

...

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.09  E-value=8.6e-06  Score=64.50  Aligned_cols=60  Identities=22%  Similarity=0.357  Sum_probs=46.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe---CcccHhhhhhcCcccccEE
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD---ATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~---~~~~~~l~~~~~i~~~P~i  214 (461)
                      .+++++|.|+++||++|+...+.+.++++.+.+.+.+..+.   .+....+++++++..+|++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~   82 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV   82 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence            36789999999999999999999999988886666665552   2234457778888777865

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=98.07  E-value=4e-05  Score=59.90  Aligned_cols=100  Identities=13%  Similarity=0.126  Sum_probs=75.4

Q ss_pred             eEcCccchhHHHhcCCCeEEEEE---ECCCCHhHHhhHHHHHHHHHHcC-CceEEEEEecCCchhhHhhcCCCC----cc
Q psy17502         19 IKLTTSNFDDKVIKSDEVWIVEY---YAPWCGHCQSFKDEYMKLATALK-GVVKVGAVNADEEKSLSSSHGVTG----FP   90 (461)
Q Consensus        19 ~~l~~~~f~~~~~~~~~~~lv~f---~~~~c~~C~~~~~~~~~~a~~~~-~~v~~~~vd~~~~~~l~~~~~i~~----~P   90 (461)
                      -++|.+|... . ...+..++++   |+..-..-..+...+.++|+.++ +++.|+.+|.++.....+.||+..    .|
T Consensus         2 ~~~~~en~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P   79 (111)
T cd03073           2 GHRTKDNRAQ-F-TKKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKP   79 (111)
T ss_pred             CeeccchHHH-h-ccCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence            4678888888 4 3444455543   23344556778999999999999 799999999998877889999984    99


Q ss_pred             EEEEEcCCCCCccccCCc-chhHHHHHHHHH
Q psy17502         91 TVKIFSDKRNPTPYQGAR-TADAIIDVALEA  120 (461)
Q Consensus        91 ~l~~~~~g~~~~~y~g~~-~~~~i~~~i~~~  120 (461)
                      ++.+...........+.. +.+.|.+|+...
T Consensus        80 ~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          80 VVAIRTAKGKKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             EEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence            999987322222346777 999999999764

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>KOG2603|consensus

Probab=98.07  E-value=3.8e-05  Score=68.79  Aligned_cols=109  Identities=18%  Similarity=0.294  Sum_probs=85.2

Q ss_pred             CCCCceEcCccchhHHHhcCC---CeEEEEEECC----CCHhHHhhHHHHHHHHHHcC------C--ceEEEEEecCCch
Q psy17502         14 SYSDVIKLTTSNFDDKVIKSD---EVWIVEYYAP----WCGHCQSFKDEYMKLATALK------G--VVKVGAVNADEEK   78 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~~~---~~~lv~f~~~----~c~~C~~~~~~~~~~a~~~~------~--~v~~~~vd~~~~~   78 (461)
                      +.+.|+.+++++|.+ ++...   -..+|+|.|.    .|.-|+++..||.-+|..+.      +  ++-|+.||.++.+
T Consensus        38 s~~~VI~~n~d~~~~-~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p  116 (331)
T KOG2603|consen   38 SESGVIRMNDDKFSK-FVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP  116 (331)
T ss_pred             CCCCeEEecCcchhh-hccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence            457799999999999 65532   3588888876    59999999999999998763      1  5889999999999


Q ss_pred             hhHhhcCCCCccEEEEEcC--C--CCC---ccccCCcchhHHHHHHHHHHhh
Q psy17502         79 SLSSSHGVTGFPTVKIFSD--K--RNP---TPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        79 ~l~~~~~i~~~P~l~~~~~--g--~~~---~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      ++.+.++++..|++++|..  |  +..   ..+.-...++.+.+|+..+++=
T Consensus       117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv  168 (331)
T KOG2603|consen  117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKV  168 (331)
T ss_pred             HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhh
Confidence            9999999999999999952  1  111   1122234488999999888643

>KOG0914|consensus

Probab=98.03  E-value=1.4e-05  Score=67.51  Aligned_cols=83  Identities=25%  Similarity=0.487  Sum_probs=67.9

Q ss_pred             ceeEc-Chhhhhhhhh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCcccHhhhhhcCccc-----
Q psy17502        139 AVVEL-TDSNFEKLVY-NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATVHQRIAGEFNIRG-----  210 (461)
Q Consensus       139 ~v~~l-~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~~~~l~~~~~i~~-----  210 (461)
                      .+..+ +.+.+++.+. +....|+|.||+.|.+.|....|.|.+++.++. +.+.||++|+...++.+.+|+|..     
T Consensus       125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr  204 (265)
T KOG0914|consen  125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR  204 (265)
T ss_pred             heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence            35556 4445544432 334689999999999999999999999999997 479999999999999999998874     


Q ss_pred             -ccEEEEEcCCC
Q psy17502        211 -YPTIKFFSPGS  221 (461)
Q Consensus       211 -~P~i~~~~~~~  221 (461)
                       .||+++|.+|.
T Consensus       205 QLPT~ilFq~gk  216 (265)
T KOG0914|consen  205 QLPTYILFQKGK  216 (265)
T ss_pred             cCCeEEEEccch
Confidence             69999999884

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.99  E-value=1.6e-05  Score=58.98  Aligned_cols=55  Identities=22%  Similarity=0.362  Sum_probs=42.8

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-----hhHhhcCCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-----SLSSSHGVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~P~l~~   94 (461)
                      ++.|+++||++|+.+.+.+.+..  ..+.+.+..||.+.+.     .+.+.+++..+|++++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i   60 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI   60 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence            47899999999999999998876  3344677777766443     2667789999999854

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=97.98  E-value=3.3e-05  Score=62.10  Aligned_cols=66  Identities=21%  Similarity=0.467  Sum_probs=54.4

Q ss_pred             CCCeEEEEEECC-CCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCch---------------------hhHhhcCCC--
Q psy17502         33 SDEVWIVEYYAP-WCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEK---------------------SLSSSHGVT--   87 (461)
Q Consensus        33 ~~~~~lv~f~~~-~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~---------------------~l~~~~~i~--   87 (461)
                      .+++++|.||+. ||++|+...+++.++.++++. .+.++.|..+...                     .+++.|++.  
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  103 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE  103 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence            568999999999 999999999999999999875 4888888876543                     367778887  


Q ss_pred             ----CccEEEEEcCC
Q psy17502         88 ----GFPTVKIFSDK   98 (461)
Q Consensus        88 ----~~P~l~~~~~g   98 (461)
                          .+|+++++..+
T Consensus       104 ~~~~~~p~~~lid~~  118 (124)
T PF00578_consen  104 KDTLALPAVFLIDPD  118 (124)
T ss_dssp             TTSEESEEEEEEETT
T ss_pred             cCCceEeEEEEECCC
Confidence                78888888743

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.95  E-value=3.5e-05  Score=83.97  Aligned_cols=90  Identities=14%  Similarity=0.293  Sum_probs=70.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEe-----C----------------------cccHhhhhhc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVD-----A----------------------TVHQRIAGEF  206 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~-----~----------------------~~~~~l~~~~  206 (461)
                      .+++++|.|+++||++|+...|.++++++++++. +.+..|.     .                      +.+..+.++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            4689999999999999999999999999999754 6665552     1                      1233567789


Q ss_pred             CcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        207 NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       207 ~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++.++|+++++.+.+   .....+.|....+.+.+++....
T Consensus       499 ~V~~iPt~ilid~~G---~iv~~~~G~~~~~~l~~~l~~~l  536 (1057)
T PLN02919        499 GVSSWPTFAVVSPNG---KLIAQLSGEGHRKDLDDLVEAAL  536 (1057)
T ss_pred             CCCccceEEEECCCC---eEEEEEecccCHHHHHHHHHHHH
Confidence            999999999996442   34556789888889888887664

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.94  E-value=3.1e-05  Score=64.00  Aligned_cols=78  Identities=17%  Similarity=0.313  Sum_probs=56.2

Q ss_pred             EcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCchhhHhhc--------CCCC
Q psy17502         20 KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEEKSLSSSH--------GVTG   88 (461)
Q Consensus        20 ~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~   88 (461)
                      ..+++.|.. ..+++++++|.++.+||+.|+.+..+-   .++|+.++..+.-++||.++.+++...|        |..|
T Consensus        24 ~w~~ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gG  102 (163)
T PF03190_consen   24 PWGEEALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGG  102 (163)
T ss_dssp             -SSHHHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---
T ss_pred             cCCHHHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCC
Confidence            345567777 788999999999999999999987643   6778888777899999999999998888        7899


Q ss_pred             ccEEEEEc-CC
Q psy17502         89 FPTVKIFS-DK   98 (461)
Q Consensus        89 ~P~l~~~~-~g   98 (461)
                      +|+.++.. +|
T Consensus       103 wPl~vfltPdg  113 (163)
T PF03190_consen  103 WPLTVFLTPDG  113 (163)
T ss_dssp             SSEEEEE-TTS
T ss_pred             CCceEEECCCC
Confidence            99888876 44

; PDB: 3IRA_A.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=97.94  E-value=6.6e-05  Score=63.52  Aligned_cols=83  Identities=12%  Similarity=0.168  Sum_probs=61.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-------------ccHhhhhhcCc--ccccEEEEEcCCCCCC
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-------------VHQRIAGEFNI--RGYPTIKFFSPGSRSA  224 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-------------~~~~l~~~~~i--~~~P~i~~~~~~~~~~  224 (461)
                      +|.|+++||++|+...|.+.++++++.  +.+..|+.+             ....+...|++  .++|+.+++...++  
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~--  148 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL--  148 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc--
Confidence            778999999999999999999999984  444333322             12335667884  58999999976632  


Q ss_pred             cC-cccccCCCCHHHHHHHHHhhc
Q psy17502        225 SD-AQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       225 ~~-~~~y~g~~~~~~i~~fi~~~~  247 (461)
                       . ...+.|..+.+++.+.|....
T Consensus       149 -i~~~~~~G~~~~~~L~~~I~~ll  171 (181)
T PRK13728        149 -EALPLLQGATDAAGFMARMDTVL  171 (181)
T ss_pred             -EEEEEEECCCCHHHHHHHHHHHH
Confidence             2 236889999998887776543

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=97.94  E-value=3.5e-05  Score=63.47  Aligned_cols=82  Identities=15%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             CCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCch---------------------hhHhhcCCCCc-
Q psy17502         34 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEK---------------------SLSSSHGVTGF-   89 (461)
Q Consensus        34 ~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~---------------------~l~~~~~i~~~-   89 (461)
                      +++++|.|| +.||+.|....+.+.++++++.+ .+.++.|..+...                     .+++.||+... 
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~  102 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK  102 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence            678999999 58999999999999999998864 4667666654322                     36667788777 


Q ss_pred             --------cEEEEEc-CCCCCccccCCcchhHHHH
Q psy17502         90 --------PTVKIFS-DKRNPTPYQGARTADAIID  115 (461)
Q Consensus        90 --------P~l~~~~-~g~~~~~y~g~~~~~~i~~  115 (461)
                              |+.+++. +|+....+.|......+.+
T Consensus       103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~  137 (140)
T cd03017         103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE  137 (140)
T ss_pred             ccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence                    8888887 5666677777766555544

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.93  E-value=9.4e-05  Score=58.27  Aligned_cols=91  Identities=9%  Similarity=0.038  Sum_probs=69.3

Q ss_pred             HhcCCCeEEEEEECC----CCHhHHhhHHHHHHHHHHcCCceEEEEEecCC--chhhHhhcCCCCccEEEEEc--CC--C
Q psy17502         30 VIKSDEVWIVEYYAP----WCGHCQSFKDEYMKLATALKGVVKVGAVNADE--EKSLSSSHGVTGFPTVKIFS--DK--R   99 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~----~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~~~--~g--~   99 (461)
                      .-++.++++|++|++    ||..|+.... =.++.+-++.++.+...|++.  ..+++..++++.+|++.++.  ++  .
T Consensus        13 ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~   91 (116)
T cd02991          13 AKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT   91 (116)
T ss_pred             HHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence            345778999999999    7888876531 133444455668888888864  46799999999999999984  22  2


Q ss_pred             CCccccCCcchhHHHHHHHHHH
Q psy17502        100 NPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus       100 ~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      .+.+..|..+++++...++..+
T Consensus        92 vv~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          92 IVGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHH
Confidence            3567899999999999998765

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=97.93  E-value=5.4e-05  Score=60.31  Aligned_cols=68  Identities=13%  Similarity=0.172  Sum_probs=45.2

Q ss_pred             hhcCCCeEEEEEeCCCChhhhhhhHHHH---HHHHHhcCceEEEEEeCcc-cHhhhhhcCcccccEEEEEcCCC
Q psy17502        152 VYNSDDIWLVEFFAPWCGHCKNLEPHWE---KAASELEGKVKLGAVDATV-HQRIAGEFNIRGYPTIKFFSPGS  221 (461)
Q Consensus       152 ~~~~~~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~i~f~~v~~~~-~~~l~~~~~i~~~P~i~~~~~~~  221 (461)
                      ..+++++++|.|+++||++|+.+...+-   ++++.+..++....++.+. +.... ..+ .++|+++++.+.+
T Consensus        19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g   90 (130)
T cd02960          19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSL   90 (130)
T ss_pred             HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCC
Confidence            3577899999999999999999977543   2445554455555555432 11221 233 5689999998654

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.91  E-value=4.6e-05  Score=74.81  Aligned_cols=102  Identities=19%  Similarity=0.356  Sum_probs=74.7

Q ss_pred             eEcChh-hhhhhhhcCCC--eEEEEEeCCCChhhhhhhHH-HHHHHHHhc-CceEEEEEeCcc----cHhhhhhcCcccc
Q psy17502        141 VELTDS-NFEKLVYNSDD--IWLVEFFAPWCGHCKNLEPH-WEKAASELE-GKVKLGAVDATV----HQRIAGEFNIRGY  211 (461)
Q Consensus       141 ~~l~~~-~~~~~~~~~~~--~~~v~f~~~~c~~c~~~~~~-~~~~a~~~~-~~i~f~~v~~~~----~~~l~~~~~i~~~  211 (461)
                      ..++.. ++++.+ .+++  ++++.|||+||-.|+.+.+. |.......+ .++...+.|.|.    +.++.++||+-+.
T Consensus       457 q~~s~~~~L~~~l-a~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~  535 (569)
T COG4232         457 QPISPLAELDQAL-AEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGV  535 (569)
T ss_pred             hccCCHHHHHHHH-HhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence            344444 666654 3444  99999999999999988763 433322222 468888888775    3567889999999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      |++++|..+++   +.....|-.+.+.+.+++++.
T Consensus       536 P~~~ff~~~g~---e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         536 PTYLFFGPQGS---EPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CEEEEECCCCC---cCcCCcceecHHHHHHHHHHh
Confidence            99999996643   444578999999999998764

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.89  E-value=6.6e-05  Score=66.92  Aligned_cols=89  Identities=13%  Similarity=0.072  Sum_probs=68.2

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC---------chhhHhhcCCCCccEEEEEcCC-CCCc-
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE---------EKSLSSSHGVTGFPTVKIFSDK-RNPT-  102 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~P~l~~~~~g-~~~~-  102 (461)
                      ++..|++||.+.|++|.++.|.+..++++++=.+..+.+|..-         +...++++||..+|++++...+ +... 
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p  222 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP  222 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence            4589999999999999999999999999986444444554422         2346789999999999999733 2332 


Q ss_pred             cccCCcchhHHHHHHHHHHh
Q psy17502        103 PYQGARTADAIIDVALEAIR  122 (461)
Q Consensus       103 ~y~g~~~~~~i~~~i~~~~~  122 (461)
                      --.|..+.++|.+-+.....
T Consensus       223 v~~G~iS~deL~~Ri~~v~t  242 (248)
T PRK13703        223 LSYGFITQDDLAKRFLNVST  242 (248)
T ss_pred             EeeccCCHHHHHHHHHHHHh
Confidence            33799999999888876653

>KOG2603|consensus

Probab=97.88  E-value=0.00013  Score=65.51  Aligned_cols=110  Identities=20%  Similarity=0.389  Sum_probs=86.0

Q ss_pred             CceeEcChhhhhhhhhcCCC--eEEEEEeC----CCChhhhhhhHHHHHHHHHhc------C--ceEEEEEeCcccHhhh
Q psy17502        138 KAVVELTDSNFEKLVYNSDD--IWLVEFFA----PWCGHCKNLEPHWEKAASELE------G--KVKLGAVDATVHQRIA  203 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~--~~~v~f~~----~~c~~c~~~~~~~~~~a~~~~------~--~i~f~~v~~~~~~~l~  203 (461)
                      ..|+.++++.+..++....+  -.+|.|.|    ..|.-|.+...+|.-+|...+      +  ++-|+.||.++.+++.
T Consensus        40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~F  119 (331)
T KOG2603|consen   40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVF  119 (331)
T ss_pred             CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHH
Confidence            56999999999998754333  35666665    379999999999999998886      2  5889999999999999


Q ss_pred             hhcCcccccEEEEEcCCCCCCcCcccccC---CCCHHHHHHHHHhhc
Q psy17502        204 GEFNIRGYPTIKFFSPGSRSASDAQEYNG---GRTSQDIVTWALNKY  247 (461)
Q Consensus       204 ~~~~i~~~P~i~~~~~~~~~~~~~~~y~g---~~~~~~i~~fi~~~~  247 (461)
                      +++++++.|++++|.+...+..+...+++   ..+++++.+|+....
T Consensus       120 q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~t  166 (331)
T KOG2603|consen  120 QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRT  166 (331)
T ss_pred             HHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhh
Confidence            99999999999999765333333333332   245999999998876

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.85  E-value=4.8e-05  Score=61.15  Aligned_cols=82  Identities=21%  Similarity=0.303  Sum_probs=50.6

Q ss_pred             cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhc---CCCCccEEEEEcC
Q psy17502         21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH---GVTGFPTVKIFSD   97 (461)
Q Consensus        21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~P~l~~~~~   97 (461)
                      ++++....+.....+..++.|..+|||.|++..|.+.++++... .+.+-.+.-++++++.++|   |.+.+|+++++.+
T Consensus        28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~  106 (129)
T PF14595_consen   28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK  106 (129)
T ss_dssp             --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred             CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence            44444444223355678888999999999999999999999754 4777777777788777665   6888999999974


Q ss_pred             -CCCCcc
Q psy17502         98 -KRNPTP  103 (461)
Q Consensus        98 -g~~~~~  103 (461)
                       |+...+
T Consensus       107 ~~~~lg~  113 (129)
T PF14595_consen  107 DGKELGR  113 (129)
T ss_dssp             T--EEEE
T ss_pred             CCCEeEE
Confidence             444333

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.85  E-value=3.6e-05  Score=58.78  Aligned_cols=94  Identities=16%  Similarity=0.210  Sum_probs=68.7

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHh---HHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGH---CQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~---C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      .....++.+++++ ++......+++|. ..|..   +....-.+-++.+.+.+.+..+.|.-..++.|..+||+..+|++
T Consensus         9 ~g~~~vd~~~ld~-~l~~~~~~vlf~~-gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaL   86 (107)
T PF07449_consen    9 HGWPRVDADTLDA-FLAAPGDAVLFFA-GDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPAL   86 (107)
T ss_dssp             -TEEEE-CCCHHH-HHHCCSCEEEEES-S-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred             cCCeeechhhHHH-HHhCCCcEEEEEC-CCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeE
Confidence            4567889999999 7777766655555 44443   44444466667777888888888998888999999999999999


Q ss_pred             EEEcCCCCCccccCCcchh
Q psy17502         93 KIFSDKRNPTPYQGARTAD  111 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~~  111 (461)
                      +++++|+......|.++-+
T Consensus        87 vf~R~g~~lG~i~gi~dW~  105 (107)
T PF07449_consen   87 VFFRDGRYLGAIEGIRDWA  105 (107)
T ss_dssp             EEEETTEEEEEEESSSTHH
T ss_pred             EEEECCEEEEEecCeeccc
Confidence            9999987666666666544

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PTZ00256 glutathione peroxidase; Provisional

Probab=97.81  E-value=0.00012  Score=63.21  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=34.9

Q ss_pred             CC-eEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecC
Q psy17502         34 DE-VWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNAD   75 (461)
Q Consensus        34 ~~-~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~   75 (461)
                      ++ .+++.+||+||++|+..+|.+++++++++++ +.++.|+|+
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~   83 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN   83 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence            44 4456669999999999999999999999763 888888864

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=97.81  E-value=0.0001  Score=63.17  Aligned_cols=88  Identities=16%  Similarity=0.144  Sum_probs=61.7

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~   82 (461)
                      .+++++|.|| +.||++|....+++.++++++.+ .+.++.|+.+..                            ..+++
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~  107 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR  107 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence            3578999999 89999999999999999999864 466666665432                            13556


Q ss_pred             hcCCC------CccEEEEEc-CCCCCccccC----CcchhHHHHHHHHH
Q psy17502         83 SHGVT------GFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALEA  120 (461)
Q Consensus        83 ~~~i~------~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~~  120 (461)
                      +|++.      ..|+.+++. +|.....+.+    .++.+++...|+..
T Consensus       108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            67775      467888887 5544445533    23556677777553

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.80  E-value=9.9e-05  Score=61.45  Aligned_cols=47  Identities=23%  Similarity=0.337  Sum_probs=36.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchh
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKS   79 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~   79 (461)
                      .+..+++.|++.||+.|+...|.+.++++++.+ .+.++.|+.+....
T Consensus        23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~   70 (149)
T cd02970          23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK   70 (149)
T ss_pred             CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence            344555555699999999999999999999864 48888888776543

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=97.76  E-value=0.00017  Score=61.31  Aligned_cols=43  Identities=16%  Similarity=0.252  Sum_probs=36.7

Q ss_pred             CCCeEEEEEECCC-CHhHHhhHHHHHHHHHHcCCceEEEEEecCC
Q psy17502         33 SDEVWIVEYYAPW-CGHCQSFKDEYMKLATALKGVVKVGAVNADE   76 (461)
Q Consensus        33 ~~~~~lv~f~~~~-c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~   76 (461)
                      .+++++|.||+.| |+.|....|.+.++++++. .+.++.|+++.
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~   86 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADL   86 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCC
Confidence            4568999999999 9999999999999999985 57777777663

>TIGR03137 AhpC peroxiredoxin

Probab=97.76  E-value=0.00014  Score=63.15  Aligned_cols=87  Identities=16%  Similarity=0.145  Sum_probs=61.7

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC-------------------------chhhHhhcC
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE-------------------------EKSLSSSHG   85 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~   85 (461)
                      .+++++|.|| +.||+.|....+++.++++++.+ .+.++.|+++.                         +..+++.||
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g  109 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG  109 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence            3568999999 99999999999999999998864 35666666542                         224777888


Q ss_pred             CC------CccEEEEEc-CCCCCccccC----CcchhHHHHHHHH
Q psy17502         86 VT------GFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALE  119 (461)
Q Consensus        86 i~------~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~  119 (461)
                      +.      ..|+.+++. +|.....+.+    .+..+++...|+.
T Consensus       110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~  154 (187)
T TIGR03137       110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA  154 (187)
T ss_pred             CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            86      358888886 6644433321    3467777777654

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=97.75  E-value=0.00017  Score=58.20  Aligned_cols=66  Identities=12%  Similarity=0.272  Sum_probs=48.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc---------------------------ccHhhhhhc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT---------------------------VHQRIAGEF  206 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~---------------------------~~~~l~~~~  206 (461)
                      .+++++|.|++.||+.|....+.+.++++.+++ .+.+..|...                           ....+++.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            357999999999999999999999999999974 4666665321                           112345567


Q ss_pred             CcccccEEEEEcCC
Q psy17502        207 NIRGYPTIKFFSPG  220 (461)
Q Consensus       207 ~i~~~P~i~~~~~~  220 (461)
                      ++.++|+.+++.+.
T Consensus       102 ~v~~~P~~~vid~~  115 (126)
T cd03012         102 GNQYWPALYLIDPT  115 (126)
T ss_pred             CCCcCCeEEEECCC
Confidence            77777877777543

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.74  E-value=0.00025  Score=51.32  Aligned_cols=71  Identities=20%  Similarity=0.408  Sum_probs=53.7

Q ss_pred             EeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccC-CCCHHHHHH
Q psy17502        163 FFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG-GRTSQDIVT  241 (461)
Q Consensus       163 f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g-~~~~~~i~~  241 (461)
                      +++++|++|..+...+.+++..+ + +.+-.++....+++ .+||+.+.|++++  +      ....|.| --+.+.|.+
T Consensus         5 v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--n------g~~~~~G~~p~~~el~~   73 (76)
T PF13192_consen    5 VFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEEI-EKYGVMSVPALVI--N------GKVVFVGRVPSKEELKE   73 (76)
T ss_dssp             EECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHHH-HHTT-SSSSEEEE--T------TEEEEESS--HHHHHHH
T ss_pred             EeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHHH-HHcCCCCCCEEEE--C------CEEEEEecCCCHHHHHH
Confidence            36888999999999999999888 3 66666676556666 9999999999976  2      3466888 567788888


Q ss_pred             HHH
Q psy17502        242 WAL  244 (461)
Q Consensus       242 fi~  244 (461)
                      |+.
T Consensus        74 ~l~   76 (76)
T PF13192_consen   74 LLE   76 (76)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            873

...

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.74  E-value=0.0016  Score=66.68  Aligned_cols=195  Identities=15%  Similarity=0.184  Sum_probs=126.1

Q ss_pred             hhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcC
Q psy17502        148 FEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASD  226 (461)
Q Consensus       148 ~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~  226 (461)
                      +.+.+.+- +++.++.|..+.|..|.++....++++ .+.+++.+...|..++.+++++|++...|++.+++.+..  ..
T Consensus       357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~--~~  433 (555)
T TIGR03143       357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGN--YT  433 (555)
T ss_pred             HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCc--cc
Confidence            44444333 345677888888888999998888888 556788888888778888999999999999999964321  23


Q ss_pred             cccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHh-cCCCeEE-EEEeCCccccChhhHHHHHHHHHHHHHh
Q psy17502        227 AQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEAC-EDHPLCI-VAVLPHILDCQSSCRNNYLEILQKLGDK  304 (461)
Q Consensus       227 ~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~-~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~va~~  304 (461)
                      ..+|.|--.-.++..||.....-..+.+.   + ++...+... -+.+..+ +++.+.     ..........++++|..
T Consensus       434 ~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~---l-~~~~~~~i~~~~~~~~i~v~~~~~-----C~~Cp~~~~~~~~~~~~  504 (555)
T TIGR03143       434 GLKFHGVPSGHELNSFILALYNAAGPGQP---L-GEELLEKIKKITKPVNIKIGVSLS-----CTLCPDVVLAAQRIASL  504 (555)
T ss_pred             ceEEEecCccHhHHHHHHHHHHhcCCCCC---C-CHHHHHHHHhcCCCeEEEEEECCC-----CCCcHHHHHHHHHHHHh
Confidence            47787755555566666544322222222   2 233333222 2345434 334443     34455677788888888


Q ss_pred             ccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHH
Q psy17502        305 YKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFL  363 (461)
Q Consensus       305 ~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi  363 (461)
                      ..+.  ....++...++++++.+++.  ..|+++|-.   .+.  +.|..+.+.|.+++
T Consensus       505 ~~~i--~~~~i~~~~~~~~~~~~~v~--~vP~~~i~~---~~~--~~G~~~~~~~~~~~  554 (555)
T TIGR03143       505 NPNV--EAEMIDVSHFPDLKDEYGIM--SVPAIVVDD---QQV--YFGKKTIEEMLELI  554 (555)
T ss_pred             CCCc--eEEEEECcccHHHHHhCCce--ecCEEEECC---EEE--EeeCCCHHHHHHhh
Confidence            7643  45555666789999999998  689998842   222  34666888887765

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.72  E-value=0.00023  Score=55.82  Aligned_cols=66  Identities=14%  Similarity=0.281  Sum_probs=46.3

Q ss_pred             CCCeEEEEEECC-------CCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-------hhHh--hcCCCCccEEEEEc
Q psy17502         33 SDEVWIVEYYAP-------WCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-------SLSS--SHGVTGFPTVKIFS   96 (461)
Q Consensus        33 ~~~~~lv~f~~~-------~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-------~l~~--~~~i~~~P~l~~~~   96 (461)
                      .+++++|+|++.       ||+.|+...|.+.++-....+...++.|.+...+       ....  +++++++|||+-+.
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~   97 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE   97 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence            457899999854       9999999999999999887667888888774322       2333  58999999999998


Q ss_pred             CC
Q psy17502         97 DK   98 (461)
Q Consensus        97 ~g   98 (461)
                      .+
T Consensus        98 ~~   99 (119)
T PF06110_consen   98 TG   99 (119)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

; PDB: 1V9W_A 1WOU_A.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.66  E-value=0.00093  Score=49.84  Aligned_cols=108  Identities=17%  Similarity=0.256  Sum_probs=72.0

Q ss_pred             cceeecCHHHHHHHhc-CCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcc-eEEEecccccchhHHH----hhC
Q psy17502        255 EIKQIVSEATFKEACE-DHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV-WGWIWSEAVAQPDLEN----VLE  328 (461)
Q Consensus       255 ~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~-f~~v~~d~~~~~~~~~----~lg  328 (461)
                      .++.++.++.++.... -....+++|..    ....+-..++++++++|+.++... ..++++|.+.++-+..    .||
T Consensus         2 tlrkl~~~~m~e~wedd~~g~~IvAFae----e~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~   77 (120)
T cd03074           2 TLRKLKPENMFETWEDDLDGIHIVAFAE----EEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFG   77 (120)
T ss_pred             chhhccHHHHHHhhhcccCCceEEEEec----cCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcC
Confidence            3444555555544321 12445555532    234455678899999999998654 7899999888876655    477


Q ss_pred             CCCCCCccEEEEccCc--cccccCCC---CCCHHHHHHHHHHHh
Q psy17502        329 IGGFGYPAMAVLNAKK--MKYSLLKG---PFSYDGINEFLRDLS  367 (461)
Q Consensus       329 l~~~~~P~l~i~~~~~--~k~~~~~~---~~~~~~i~~Fi~~~~  367 (461)
                      |.- .-|.|.+++...  ..+.-..+   ..+.+.|..||++++
T Consensus        78 IDl-~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL  120 (120)
T cd03074          78 IDL-FRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL  120 (120)
T ss_pred             ccc-CCCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence            775 369999999875  23322222   368999999999874

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=97.65  E-value=0.00018  Score=60.40  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=55.8

Q ss_pred             CCCeEEEEEECC-CCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCch---------------------hhHhhcCCCCc
Q psy17502         33 SDEVWIVEYYAP-WCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEK---------------------SLSSSHGVTGF   89 (461)
Q Consensus        33 ~~~~~lv~f~~~-~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~---------------------~l~~~~~i~~~   89 (461)
                      .+++++|.||+. ||+.|....+.+.++++++++ .+.++.|+.+...                     .++++||+.+.
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  108 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE  108 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence            456899999976 688899999999999998865 3777777765332                     35666776543


Q ss_pred             ------------cEEEEEc-CCCCCccccCCcchhH
Q psy17502         90 ------------PTVKIFS-DKRNPTPYQGARTADA  112 (461)
Q Consensus        90 ------------P~l~~~~-~g~~~~~y~g~~~~~~  112 (461)
                                  |+.+++. +|.....|.|....+.
T Consensus       109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~  144 (154)
T PRK09437        109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH  144 (154)
T ss_pred             cccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence                        5556665 6666666777554444

>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX)

Probab=97.65  E-value=0.00033  Score=52.11  Aligned_cols=91  Identities=14%  Similarity=0.230  Sum_probs=64.1

Q ss_pred             CCeEEEEEeCCccccChh-hHHHHHHHHHHHHHhcc----Cc----c-eEEEecccccchhHHHhhCCCCCCCccEEEEc
Q psy17502        272 HPLCIVAVLPHILDCQSS-CRNNYLEILQKLGDKYK----QK----V-WGWIWSEAVAQPDLENVLEIGGFGYPAMAVLN  341 (461)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~va~~~~----~~----~-f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~  341 (461)
                      ...|++.|...    ..+ ..+...+.++.+|.++-    .+    . .-|+..+.+....+.+..++.. .-|.++|++
T Consensus        14 ~~p~lvlf~D~----Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d-~~P~LviLD   88 (116)
T cd03071          14 EGPCLVLFVDS----EDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPE-AAPLLTILD   88 (116)
T ss_pred             CCceEEEEecc----cchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCc-cCceEEEEe
Confidence            34556655432    233 46677777887776542    21    1 3456666656666777778875 689999999


Q ss_pred             cCc-cccccCCCCCCHHHHHHHHHHHh
Q psy17502        342 AKK-MKYSLLKGPFSYDGINEFLRDLS  367 (461)
Q Consensus       342 ~~~-~k~~~~~~~~~~~~i~~Fi~~~~  367 (461)
                      ... ++|.+..+++|.+.+.+|+.+|+
T Consensus        89 ip~r~~~v~~~eeIT~e~~~~fv~~yl  115 (116)
T cd03071          89 MSARAKYVMDVEEITPAIVEAFVSDFL  115 (116)
T ss_pred             ccccceEeCchHhcCHHHHHHHHHHhh
Confidence            766 78988888999999999999986

NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.65  E-value=0.00017  Score=53.64  Aligned_cols=76  Identities=20%  Similarity=0.280  Sum_probs=54.9

Q ss_pred             EEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch----hhHhhcC--CCCccEEEEEcCCCCCccccCCcch
Q psy17502         37 WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK----SLSSSHG--VTGFPTVKIFSDKRNPTPYQGARTA  110 (461)
Q Consensus        37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~P~l~~~~~g~~~~~y~g~~~~  110 (461)
                      -++.|+.+||++|+++...++++..++. .+.+..+|.+++.    ++.+..+  +..+|++++  +|+.+.      ..
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig------g~   72 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG------GC   72 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc------CH
Confidence            3788999999999999999999987653 4888888887643    4555555  488999864  554322      23


Q ss_pred             hHHHHHHHHHH
Q psy17502        111 DAIIDVALEAI  121 (461)
Q Consensus       111 ~~i~~~i~~~~  121 (461)
                      +++.++++..+
T Consensus        73 ~~~~~~~~~~~   83 (85)
T PRK11200         73 TDFEAYVKENL   83 (85)
T ss_pred             HHHHHHHHHhc
Confidence            56677666543

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.65  E-value=0.00015  Score=64.85  Aligned_cols=83  Identities=18%  Similarity=0.277  Sum_probs=59.1

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEE-----------------------------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA-----------------------------------------   71 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~-----------------------------------------   71 (461)
                      +.+..++.|+.|.|++|+++.+++.++.+. .-.+.+..                                         
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c  184 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC  184 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC-CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence            346789999999999999999998876531 00111111                                         


Q ss_pred             -EecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         72 -VNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        72 -vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                       .+..++.++++++||+++|+++ +.+|+   ...|..+.+.|.+++...
T Consensus       185 ~~~v~~~~~la~~lgi~gTPtiv-~~~G~---~~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        185 DVDIADHYALGVQFGVQGTPAIV-LSNGT---LVPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cchHHHhHHHHHHcCCccccEEE-EcCCe---EeeCCCCHHHHHHHHHHc
Confidence             1112233589999999999999 56664   358999999999998764

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.64  E-value=0.00021  Score=49.34  Aligned_cols=60  Identities=37%  Similarity=0.766  Sum_probs=49.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh---hcCcccccEEEEEcCC
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG---EFNIRGYPTIKFFSPG  220 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~---~~~i~~~P~i~~~~~~  220 (461)
                      ++.|+.+||++|....+.+.++ ......+.+..++++.......   .+++...|+++++..+
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            4678999999999999999988 4555689999999887665544   7888899999999865

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.63  E-value=0.00031  Score=55.44  Aligned_cols=65  Identities=37%  Similarity=0.725  Sum_probs=57.9

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-ccHhhhhhcC--cccccEEEEEcCC
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-VHQRIAGEFN--IRGYPTIKFFSPG  220 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-~~~~l~~~~~--i~~~P~i~~~~~~  220 (461)
                      +.++++.|+++||++|....+.+.++++.+...+.+..++.. ....+...++  +..+|++.++.++
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   99 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDG   99 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCc
Confidence            678889989999999999999999999999777888888886 6788889999  8889999988876

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=97.62  E-value=0.00015  Score=59.93  Aligned_cols=44  Identities=16%  Similarity=0.213  Sum_probs=37.9

Q ss_pred             CCCeEEEEEECCCCHh-HHhhHHHHHHHHHHcCC----ceEEEEEecCC
Q psy17502         33 SDEVWIVEYYAPWCGH-CQSFKDEYMKLATALKG----VVKVGAVNADE   76 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~-C~~~~~~~~~~a~~~~~----~v~~~~vd~~~   76 (461)
                      .+++++|.||++||+. |....+.+.++++++++    ++.+..|+.+.
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            5679999999999998 99999999999999865    38888887653

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=97.59  E-value=0.00058  Score=59.31  Aligned_cols=85  Identities=20%  Similarity=0.204  Sum_probs=56.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe-------------C-----cccHhhhhhcCcccccEEEE
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD-------------A-----TVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~-------------~-----~~~~~l~~~~~i~~~P~i~~  216 (461)
                      .+++++|.|+++||+.|+...|.+.++.+...-.+.++..+             .     ....++++.|++.+.|+.++
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l  152 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL  152 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence            46789999999999999999999999887654334443311             0     11345677889999999888


Q ss_pred             EcCCCCCCcCcccccCC-CCHHHHHHHHH
Q psy17502        217 FSPGSRSASDAQEYNGG-RTSQDIVTWAL  244 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g~-~~~~~i~~fi~  244 (461)
                      +.+.     ....+.|. ...+.+.+.+.
T Consensus       153 ID~~-----G~I~~~g~~~~~~~le~ll~  176 (189)
T TIGR02661       153 LDQD-----GKIRAKGLTNTREHLESLLE  176 (189)
T ss_pred             ECCC-----CeEEEccCCCCHHHHHHHHH
Confidence            7754     23334454 24455555554

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.57  E-value=0.00029  Score=50.38  Aligned_cols=51  Identities=24%  Similarity=0.346  Sum_probs=38.5

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhc----CCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH----GVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~----~i~~~P~l~~   94 (461)
                      ++.|+++||++|+++...+.+.      .+.+..+|.+.++...+.+    ++..+|++++
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~   56 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI   56 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence            5789999999999988776652      3667778887665544433    7889999976

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.54  E-value=0.00043  Score=49.57  Aligned_cols=68  Identities=16%  Similarity=0.329  Sum_probs=49.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh----hhhhcCcccccEEEEEcCCCCCCcCcccccCCCC
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR----IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT  235 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~----l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~  235 (461)
                      +..|+++||++|....+.+.+      ..+.+..+|++.++.    +.+.+++.++|++++.  +     ..  ..| .+
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-----~~--~~g-~~   65 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-----KI--IVG-FD   65 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-----EE--Eee-CC
Confidence            467899999999998877755      247778888776543    5567899999999884  3     11  445 46


Q ss_pred             HHHHHHHH
Q psy17502        236 SQDIVTWA  243 (461)
Q Consensus       236 ~~~i~~fi  243 (461)
                      .+.|.+|+
T Consensus        66 ~~~i~~~i   73 (74)
T TIGR02196        66 PEKLDQLL   73 (74)
T ss_pred             HHHHHHHh
Confidence            78887776

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.53  E-value=0.00051  Score=60.63  Aligned_cols=86  Identities=14%  Similarity=0.182  Sum_probs=65.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc---------ccHhhhhhcCcccccEEEEEcCCCCCCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT---------VHQRIAGEFNIRGYPTIKFFSPGSRSAS  225 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~---------~~~~l~~~~~i~~~P~i~~~~~~~~~~~  225 (461)
                      .++..++.||.+.|+.|..+.+++..+++.+.=.+..+.+|..         .+..+++++||..+|++++....++  .
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~--~  196 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK--K  196 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC--e
Confidence            3678899999999999999999999999999534555555521         3577899999999999999998742  1


Q ss_pred             CcccccCCCCHHHHHHH
Q psy17502        226 DAQEYNGGRTSQDIVTW  242 (461)
Q Consensus       226 ~~~~y~g~~~~~~i~~f  242 (461)
                      ....-.|-.+.++|.+=
T Consensus       197 ~~pv~~G~~s~~~L~~r  213 (215)
T PF13728_consen  197 WYPVSQGFMSLDELEDR  213 (215)
T ss_pred             EEEEeeecCCHHHHHHh
Confidence            22233588888887653

>KOG3425|consensus

Probab=97.52  E-value=0.00063  Score=51.95  Aligned_cols=65  Identities=15%  Similarity=0.298  Sum_probs=52.9

Q ss_pred             CCCeEEEEEEC--------CCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-------hhHhhcCC-CCccEEEEEc
Q psy17502         33 SDEVWIVEYYA--------PWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-------SLSSSHGV-TGFPTVKIFS   96 (461)
Q Consensus        33 ~~~~~lv~f~~--------~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-------~l~~~~~i-~~~P~l~~~~   96 (461)
                      +++-++|+|++        +||+.|.+..|.+.++-+....++.|+.|++.+-+       .+....++ .++|||.=+.
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~  103 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK  103 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence            45569999985        49999999999999999977778999999987533       35555666 8999999887


Q ss_pred             C
Q psy17502         97 D   97 (461)
Q Consensus        97 ~   97 (461)
                      +
T Consensus       104 ~  104 (128)
T KOG3425|consen  104 R  104 (128)
T ss_pred             C
Confidence            4

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=97.46  E-value=0.00081  Score=61.08  Aligned_cols=106  Identities=16%  Similarity=0.245  Sum_probs=72.2

Q ss_pred             ceeEcC-hhhhhhhhhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        139 AVVELT-DSNFEKLVYNS--DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       139 ~v~~l~-~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      .|..++ .+.|.+.+...  ...++|.||.+.+..|..+...+..+|..+ ..++|.++...... +...|.+...|+|+
T Consensus       126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-p~vKFvkI~a~~~~-~~~~f~~~~LPtll  203 (265)
T PF02114_consen  126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-PEVKFVKIRASKCP-ASENFPDKNLPTLL  203 (265)
T ss_dssp             SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--TTSEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred             eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEEehhccC-cccCCcccCCCEEE
Confidence            477775 46777765332  346889999999999999999999999999 57999998765433 67789999999999


Q ss_pred             EEcCCCCCCcCccc---ccC-CCCHHHHHHHHHhhc
Q psy17502        216 FFSPGSRSASDAQE---YNG-GRTSQDIVTWALNKY  247 (461)
Q Consensus       216 ~~~~~~~~~~~~~~---y~g-~~~~~~i~~fi~~~~  247 (461)
                      +|++|.... ....   .-| +++..+|..|+.++.
T Consensus       204 vYk~G~l~~-~~V~l~~~~g~df~~~dlE~~L~~~G  238 (265)
T PF02114_consen  204 VYKNGDLIG-NFVGLTDLLGDDFFTEDLEAFLIEYG  238 (265)
T ss_dssp             EEETTEEEE-EECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred             EEECCEEEE-eEEehHHhcCCCCCHHHHHHHHHHcC
Confidence            999873211 1111   223 578889999998764

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>KOG2501|consensus

Probab=97.46  E-value=0.00036  Score=56.78  Aligned_cols=66  Identities=21%  Similarity=0.519  Sum_probs=50.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-----eEEEEEeCcc-----------------------cHhhhhhc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-----VKLGAVDATV-----------------------HQRIAGEF  206 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-----i~f~~v~~~~-----------------------~~~l~~~~  206 (461)
                      .++++.++|.+.||++|+.+.|...++.+.++..     +.|+.-|-+.                       .++++.+|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            3589999999999999999999988888877654     4444444221                       12477899


Q ss_pred             CcccccEEEEEcCC
Q psy17502        207 NIRGYPTIKFFSPG  220 (461)
Q Consensus       207 ~i~~~P~i~~~~~~  220 (461)
                      +|.+.|++++..+.
T Consensus       112 ~v~~iP~l~i~~~d  125 (157)
T KOG2501|consen  112 EVKGIPALVILKPD  125 (157)
T ss_pred             ccCcCceeEEecCC
Confidence            99999999998876

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=97.43  E-value=0.00062  Score=51.72  Aligned_cols=79  Identities=13%  Similarity=0.200  Sum_probs=58.8

Q ss_pred             CccchhHHHhcC--CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCC-ccEEEE
Q psy17502         22 TTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTG-FPTVKI   94 (461)
Q Consensus        22 ~~~~f~~~~~~~--~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~-~P~l~~   94 (461)
                      |.+.+++ +++.  +++++|+=+++.|+-+.....+|++......+.+.++.+|.-+.+.    ++++|||.+ -|.+++
T Consensus         6 t~eql~~-i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il   84 (105)
T PF11009_consen    6 TEEQLEE-ILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL   84 (105)
T ss_dssp             SHHHHHH-HHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred             CHHHHHH-HHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence            3466777 6665  7799999999999999999999999999887779999999988764    788999986 999999


Q ss_pred             EcCCCCC
Q psy17502         95 FSDKRNP  101 (461)
Q Consensus        95 ~~~g~~~  101 (461)
                      +++|+.+
T Consensus        85 i~~g~~v   91 (105)
T PF11009_consen   85 IKNGKVV   91 (105)
T ss_dssp             EETTEEE
T ss_pred             EECCEEE
Confidence            9998654

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=97.43  E-value=0.00065  Score=58.23  Aligned_cols=61  Identities=20%  Similarity=0.320  Sum_probs=46.0

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC--------c---hhhHh-hcCCCCccEEEEE
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE--------E---KSLSS-SHGVTGFPTVKIF   95 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~--------~---~~l~~-~~~i~~~P~l~~~   95 (461)
                      .++++||.|+|.||+.|++ .+.++++++++++ .+.+..+.|+.        .   .++|+ ++++. +|.+.-.
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~   97 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKI   97 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEE
Confidence            4689999999999999975 8899999999976 48899998852        1   23554 56663 6655334

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.43  E-value=0.0017  Score=48.03  Aligned_cols=105  Identities=17%  Similarity=0.259  Sum_probs=71.6

Q ss_pred             cceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecc--cccchhHHHhhCCCCC
Q psy17502        255 EIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSE--AVAQPDLENVLEIGGF  332 (461)
Q Consensus       255 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d--~~~~~~~~~~lgl~~~  332 (461)
                      .+..+++...+...+..+.-+++.|..     +..+....+..+.++|...+|.. ..+++|  ......+++.+.+.++
T Consensus         2 ~ie~i~d~KdfKKLLRTr~NVLvLy~k-----s~k~a~~~Lk~~~~~A~~vkG~g-T~~~vdCgd~e~kKLCKKlKv~~~   75 (112)
T cd03067           2 LIEDISDHKDFKKLLRTRNNVLVLYSK-----SAKSAEALLKLLSDVAQAVKGQG-TIAWIDCGDSESRKLCKKLKVDPS   75 (112)
T ss_pred             ccccccchHHHHHHHhhcCcEEEEEec-----chhhHHHHHHHHHHHHHHhcCce-eEEEEecCChHHHHHHHHHccCCC
Confidence            345566777777777665555555543     36677888899999999999987 455555  4457889999999855


Q ss_pred             CCccEEEE-ccCccccc-cCCCCCCHHHHHHHHHH
Q psy17502        333 GYPAMAVL-NAKKMKYS-LLKGPFSYDGINEFLRD  365 (461)
Q Consensus       333 ~~P~l~i~-~~~~~k~~-~~~~~~~~~~i~~Fi~~  365 (461)
                      ..|.=..+ +-.++.|. -|+..++..+|..|+++
T Consensus        76 ~kp~~~~LkHYKdG~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          76 SKPKPVELKHYKDGDFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             CCCCcchhhcccCCCccccccchhhHHHHHHHhhC
Confidence            55553333 22223332 24557889999999975

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.40  E-value=0.0011  Score=57.22  Aligned_cols=88  Identities=15%  Similarity=0.121  Sum_probs=63.3

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC-------------------------chhhHhhcC
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE-------------------------EKSLSSSHG   85 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~   85 (461)
                      .++++++.|| +.||+.|....+.|.+.++++.+ .+.+..|+.+.                         +..++++||
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            3458899999 99999999999999999999854 36666666543                         235778888


Q ss_pred             C----CCc--cEEEEEc-CCCCCccc----cCCcchhHHHHHHHHH
Q psy17502         86 V----TGF--PTVKIFS-DKRNPTPY----QGARTADAIIDVALEA  120 (461)
Q Consensus        86 i----~~~--P~l~~~~-~g~~~~~y----~g~~~~~~i~~~i~~~  120 (461)
                      +    .+.  |+.++.. +|.....+    ...++.+++...+...
T Consensus       110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382        110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            8    356  8889887 55433222    2346888888887553

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=97.38  E-value=0.0013  Score=54.52  Aligned_cols=66  Identities=20%  Similarity=0.419  Sum_probs=51.8

Q ss_pred             CCCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc---------------------cHhhhhhcCcc--
Q psy17502        155 SDDIWLVEFFAP-WCGHCKNLEPHWEKAASELEG-KVKLGAVDATV---------------------HQRIAGEFNIR--  209 (461)
Q Consensus       155 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~---------------------~~~l~~~~~i~--  209 (461)
                      .+++++|.|++. ||++|....+.+.++++.+++ .+.+..+..+.                     +..+.++|++.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            468899999999 999999999999999888664 46665554322                     23578889988  


Q ss_pred             -------cccEEEEEcCC
Q psy17502        210 -------GYPTIKFFSPG  220 (461)
Q Consensus       210 -------~~P~i~~~~~~  220 (461)
                             ++|+.+++...
T Consensus       107 ~~~~~~~~~P~~~lId~~  124 (146)
T PF08534_consen  107 EDPGNGFGIPTTFLIDKD  124 (146)
T ss_dssp             CCTTTTSSSSEEEEEETT
T ss_pred             cccccCCeecEEEEEECC
Confidence                   89998888765

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.38  E-value=0.00051  Score=60.21  Aligned_cols=76  Identities=21%  Similarity=0.305  Sum_probs=53.5

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCce--EEE-----------------------------------------
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVV--KVG-----------------------------------------   70 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v--~~~-----------------------------------------   70 (461)
                      .+..++.|+.+.|++|+++.+.+.+.    .+++  .+.                                         
T Consensus        77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~  152 (197)
T cd03020          77 GKRVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA  152 (197)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence            46899999999999999999888751    1111  111                                         


Q ss_pred             --EEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHH
Q psy17502         71 --AVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        71 --~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i  117 (461)
                        ..+..++..+++++||+++|+++ +.+|..   +.|..+.+.|.+|+
T Consensus       153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L  197 (197)
T cd03020         153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL  197 (197)
T ss_pred             ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence              11222233588999999999997 777643   57888888777653

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=97.38  E-value=0.00071  Score=55.59  Aligned_cols=44  Identities=16%  Similarity=0.228  Sum_probs=36.7

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE   76 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~   76 (461)
                      .+++++|.|| +.||+.|....+.+.+++++++. .+.++.|..+.
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~   66 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS   66 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            5678899999 78999999999999999999853 47777777654

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=97.37  E-value=0.00091  Score=55.64  Aligned_cols=45  Identities=7%  Similarity=0.137  Sum_probs=35.7

Q ss_pred             cCCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC
Q psy17502         32 KSDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE   76 (461)
Q Consensus        32 ~~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~   76 (461)
                      +..++++|.|| ++||+.|....|++.++++++.+ .+.++.|+.+.
T Consensus        26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~   72 (149)
T cd03018          26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS   72 (149)
T ss_pred             cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence            34467777777 99999999999999999999864 47777776553

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PTZ00056 glutathione peroxidase; Provisional

Probab=97.37  E-value=0.0012  Score=57.64  Aligned_cols=42  Identities=14%  Similarity=0.206  Sum_probs=36.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDA  196 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~  196 (461)
                      .+++++|.|+++||+.|....+.+.++++.+++ .+.+..|++
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~   80 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT   80 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence            357999999999999999999999999999975 478877765

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=97.33  E-value=0.00074  Score=55.79  Aligned_cols=57  Identities=18%  Similarity=0.242  Sum_probs=44.7

Q ss_pred             CCCeEEEEEECCC-CHhHHhhHHHHHHHHHHcCCceEEEEEecCCch---hhHhhcCCCCcc
Q psy17502         33 SDEVWIVEYYAPW-CGHCQSFKDEYMKLATALKGVVKVGAVNADEEK---SLSSSHGVTGFP   90 (461)
Q Consensus        33 ~~~~~lv~f~~~~-c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~P   90 (461)
                      .++++++.||+.| |++|+..+|.+.++++++. .+.++.|+.+...   +..+++++..+|
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~   85 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVT   85 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence            3578999999998 6999999999999999986 5888899887542   344555655555

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.31  E-value=0.00092  Score=45.82  Aligned_cols=51  Identities=29%  Similarity=0.447  Sum_probs=39.5

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~   94 (461)
                      ++.|+.+||++|+.+...|.+.      .+.+-.+|.+++++    +.+..|...+|++++
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            5789999999999988777322      27888889887654    444459999999987

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=97.31  E-value=0.0029  Score=53.40  Aligned_cols=82  Identities=26%  Similarity=0.412  Sum_probs=62.3

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHc--CCceEEEEEecCCch--------------------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATAL--KGVVKVGAVNADEEK--------------------------------   78 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~--~~~v~~~~vd~~~~~--------------------------------   78 (461)
                      ..++.++.|+...|++|+.+.+.+.++.+++  .+++.+..++.....                                
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE   90 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            3468999999999999999999999999998  678888877663211                                


Q ss_pred             ------------------------------------hhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHH
Q psy17502         79 ------------------------------------SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        79 ------------------------------------~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~  119 (461)
                                                          ..+++.||.++||+++  +|+.   +.|..+.+++.+.|.+
T Consensus        91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK  162 (162)
T ss_dssp             STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred             ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence                                                1556678999999888  6643   5778888888887753

...

>PRK13190 putative peroxiredoxin; Provisional

Probab=97.28  E-value=0.0011  Score=58.23  Aligned_cols=88  Identities=15%  Similarity=0.125  Sum_probs=61.8

Q ss_pred             CCe-EEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC---------------------------chhhHhhc
Q psy17502         34 DEV-WIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE---------------------------EKSLSSSH   84 (461)
Q Consensus        34 ~~~-~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~---------------------------~~~l~~~~   84 (461)
                      ++. +|+.|++.||+.|....+.+.+.++++++ .+.++.|+++.                           +..+++.|
T Consensus        27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y  106 (202)
T PRK13190         27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY  106 (202)
T ss_pred             CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence            444 44568899999999999999999998864 36666666552                           12467778


Q ss_pred             CCC------CccEEEEEc-CCCCCcc----ccCCcchhHHHHHHHHHH
Q psy17502         85 GVT------GFPTVKIFS-DKRNPTP----YQGARTADAIIDVALEAI  121 (461)
Q Consensus        85 ~i~------~~P~l~~~~-~g~~~~~----y~g~~~~~~i~~~i~~~~  121 (461)
                      |+.      .+|+++++. +|.....    ..+.++.+++...+....
T Consensus       107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            874      489999997 4432211    245688899988887643

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=97.28  E-value=0.0024  Score=56.95  Aligned_cols=42  Identities=12%  Similarity=0.125  Sum_probs=36.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDA  196 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~  196 (461)
                      .+++++|.|+++||+.|....+.+.++++.+++ .+.+..|++
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~  140 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC  140 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            358999999999999999999999999999975 477777765

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.26  E-value=0.0036  Score=53.42  Aligned_cols=66  Identities=21%  Similarity=0.350  Sum_probs=52.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCcc-----------------------------cHhhhh
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATV-----------------------------HQRIAG  204 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~-----------------------------~~~l~~  204 (461)
                      .++++++.|+++||+.|....+.+.+++..+. ..+.|..|..+.                             ...+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            46789999999999999999999999999987 367777775532                             123566


Q ss_pred             hcCcccccEEEEEcCC
Q psy17502        205 EFNIRGYPTIKFFSPG  220 (461)
Q Consensus       205 ~~~i~~~P~i~~~~~~  220 (461)
                      .|++...|+++++.+.
T Consensus       104 ~~~v~~~P~~~lid~~  119 (171)
T cd02969         104 AYGAACTPDFFLFDPD  119 (171)
T ss_pred             HcCCCcCCcEEEECCC
Confidence            7888889999999765

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=97.24  E-value=0.0027  Score=52.99  Aligned_cols=32  Identities=31%  Similarity=0.530  Sum_probs=27.8

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK   64 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~   64 (461)
                      +.++.++.|+.++|++|+.+.|.+.++...+.
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~   35 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP   35 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence            35689999999999999999999999877664

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.22  E-value=0.0014  Score=48.03  Aligned_cols=78  Identities=17%  Similarity=0.227  Sum_probs=60.3

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcC--CCCCccccCCcchhHHHH
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD--KRNPTPYQGARTADAIID  115 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~--g~~~~~y~g~~~~~~i~~  115 (461)
                      +++|+.+.|+-|..+...+..+....  .+.+-.||+++++++.++|+. .+|.+.+-..  ........+..+.+.+.+
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~   78 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA   78 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence            78999999999999998888865443  389999999999999999996 7999877541  111345677888999988


Q ss_pred             HHH
Q psy17502        116 VAL  118 (461)
Q Consensus       116 ~i~  118 (461)
                      |++
T Consensus        79 ~L~   81 (81)
T PF05768_consen   79 WLE   81 (81)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            874

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.22  E-value=0.00089  Score=49.77  Aligned_cols=74  Identities=19%  Similarity=0.258  Sum_probs=51.2

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc----hhhHhhcCC--CCccEEEEEcCCCCCccccCCcchh
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE----KSLSSSHGV--TGFPTVKIFSDKRNPTPYQGARTAD  111 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~----~~l~~~~~i--~~~P~l~~~~~g~~~~~y~g~~~~~  111 (461)
                      ++.|+.+||++|+++...+.++..+.. .+.+..+|.+.+    .++.+..|-  ..+|++++  +|+.+      -..+
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i------gG~~   72 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV------GGCT   72 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe------cCHH
Confidence            678999999999999988888765433 367777887643    356666664  78999965  44321      2236


Q ss_pred             HHHHHHHHH
Q psy17502        112 AIIDVALEA  120 (461)
Q Consensus       112 ~i~~~i~~~  120 (461)
                      +|.+++.+.
T Consensus        73 dl~~~~~~~   81 (86)
T TIGR02183        73 DFEQLVKEN   81 (86)
T ss_pred             HHHHHHHhc
Confidence            677776654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.21  E-value=0.0059  Score=47.02  Aligned_cols=94  Identities=11%  Similarity=0.237  Sum_probs=69.5

Q ss_pred             eEc-CccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         19 IKL-TTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        19 ~~l-~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      ..| +.++.++ ++. +++.++|-|+..--+   .....|.++|..++..+.|+...   +.++.+++++. .|++++++
T Consensus         3 ~~i~~~~~~e~-~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~   74 (102)
T cd03066           3 EIINSERELQA-FENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYE   74 (102)
T ss_pred             eEcCCHHHHHH-HhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeC
Confidence            455 4455777 777 778888888766444   35668999999998888886654   45677788775 69999997


Q ss_pred             C-CCCCccc-cCCcchhHHHHHHHHH
Q psy17502         97 D-KRNPTPY-QGARTADAIIDVALEA  120 (461)
Q Consensus        97 ~-g~~~~~y-~g~~~~~~i~~~i~~~  120 (461)
                      + ......| .|..+.+.|.+||...
T Consensus        75 ~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          75 PFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            4 4455669 7888999999999753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.20  E-value=0.00075  Score=49.89  Aligned_cols=55  Identities=18%  Similarity=0.262  Sum_probs=40.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-----hhhhhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-----RIAGEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-----~l~~~~~i~~~P~i~~  216 (461)
                      ++.|+++||++|....+.+.++.  ..+.+.+..++.+.+.     .+.+..++.++|++++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i   60 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI   60 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence            46899999999999999998876  3344677777654332     2566678889999854

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.18  E-value=0.001  Score=67.59  Aligned_cols=100  Identities=13%  Similarity=0.150  Sum_probs=79.5

Q ss_pred             CCceEcCccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      ..-..|+++.-+. +.+ .++.-+-.|++++|++|......+.+++... ..|..-.||..+.++++++|+|.++|++++
T Consensus        98 ~~~~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~~~id~~~~~~~~~~~~v~~VP~~~i  175 (517)
T PRK15317         98 GHPPKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITHTMIDGALFQDEVEARNIMAVPTVFL  175 (517)
T ss_pred             CCCCCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceEEEEEchhCHhHHHhcCCcccCEEEE
Confidence            3445666666665 433 3456799999999999999999999998864 468899999999999999999999999976


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                        +|+  ..+.|..+.+++.+.+.+..
T Consensus       176 --~~~--~~~~g~~~~~~~~~~~~~~~  198 (517)
T PRK15317        176 --NGE--EFGQGRMTLEEILAKLDTGA  198 (517)
T ss_pred             --CCc--EEEecCCCHHHHHHHHhccc
Confidence              443  34789999988888887653

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.17  E-value=0.0011  Score=48.71  Aligned_cols=53  Identities=23%  Similarity=0.368  Sum_probs=39.7

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-h----hhHhhcCCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-K----SLSSSHGVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-~----~l~~~~~i~~~P~l~~   94 (461)
                      ++.|+++||++|+.+.+.+.++..    ...+..++.+.+ .    .+.+..|+..+|++++
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~   59 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI   59 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence            578999999999999988887654    356667776654 2    3556678899999743

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK15000 peroxidase; Provisional

Probab=97.16  E-value=0.0021  Score=56.28  Aligned_cols=87  Identities=13%  Similarity=0.164  Sum_probs=63.0

Q ss_pred             CCCeEEEEEECC-CCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHh
Q psy17502         33 SDEVWIVEYYAP-WCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~~~-~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~   82 (461)
                      .++.+++.||+. ||+.|....++|.+.+++++. .+.++.|+++..                            ..+++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~  112 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK  112 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence            457899999985 999999999999999999864 366666666521                            13666


Q ss_pred             hcCCC------CccEEEEEc-CCCCCccccC----CcchhHHHHHHHH
Q psy17502         83 SHGVT------GFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALE  119 (461)
Q Consensus        83 ~~~i~------~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~  119 (461)
                      .||+.      ..|+.+++. +|.....+.|    .++.++++..+..
T Consensus       113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000        113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            77876      688888887 5543333333    4677788877754

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.09  E-value=0.0035  Score=56.88  Aligned_cols=83  Identities=12%  Similarity=0.244  Sum_probs=57.3

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe----------------------------------------
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN----------------------------------------   73 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd----------------------------------------   73 (461)
                      .+.+++.|+.+.|++|+++.+++..+.+.  +++.+..+-                                        
T Consensus       117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~  194 (251)
T PRK11657        117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP  194 (251)
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence            35789999999999999999888765543  222221110                                        


Q ss_pred             ------cC----CchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHH
Q psy17502         74 ------AD----EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVAL  118 (461)
Q Consensus        74 ------~~----~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~  118 (461)
                            |.    ++..+++++||+++|++++-...+.+....|..+.++|.+.+.
T Consensus       195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence                  00    1123777899999999999863335556789998888887663

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.09  E-value=0.0029  Score=55.64  Aligned_cols=85  Identities=22%  Similarity=0.233  Sum_probs=59.2

Q ss_pred             eEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc---------------------------hhhHhhcCCC
Q psy17502         36 VWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE---------------------------KSLSSSHGVT   87 (461)
Q Consensus        36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~---------------------------~~l~~~~~i~   87 (461)
                      .+|+.|++.||+.|....+.+.++++++++ .+.++.|+++..                           ..+++.||+.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~  107 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI  107 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence            556688899999999999999999999965 377777776641                           2467788875


Q ss_pred             ----C----ccEEEEEc-CCCCCccccC----CcchhHHHHHHHHH
Q psy17502         88 ----G----FPTVKIFS-DKRNPTPYQG----ARTADAIIDVALEA  120 (461)
Q Consensus        88 ----~----~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~~  120 (461)
                          +    .|+.+++. +|.....+.+    .++.+++...+...
T Consensus       108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l  153 (203)
T cd03016         108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL  153 (203)
T ss_pred             cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                2    34577776 5533323222    45677787777553

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.07  E-value=0.0044  Score=48.81  Aligned_cols=92  Identities=12%  Similarity=0.104  Sum_probs=63.9

Q ss_pred             hcCCCeEEEEEeCC----CChhhhhhhHHHHHHHHHhcCceEEEEEeCcc--cHhhhhhcCcccccEEEEEcCCCCCCcC
Q psy17502        153 YNSDDIWLVEFFAP----WCGHCKNLEPHWEKAASELEGKVKLGAVDATV--HQRIAGEFNIRGYPTIKFFSPGSRSASD  226 (461)
Q Consensus       153 ~~~~~~~~v~f~~~----~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~--~~~l~~~~~i~~~P~i~~~~~~~~~~~~  226 (461)
                      .++.+..+|+++++    ||..|+.... =.++.+.+..++.+...|++.  ...++..+++.++|++.++...+.....
T Consensus        14 k~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v   92 (116)
T cd02991          14 KQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI   92 (116)
T ss_pred             HhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence            56788999999999    7888865531 112333444566666677653  4568899999999999998533211123


Q ss_pred             cccccCCCCHHHHHHHHHh
Q psy17502        227 AQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       227 ~~~y~g~~~~~~i~~fi~~  245 (461)
                      ..+..|..+.+++...+..
T Consensus        93 v~~i~G~~~~~~ll~~L~~  111 (116)
T cd02991          93 VGRLEGLIQPEDLINRLTF  111 (116)
T ss_pred             EEEEeCCCCHHHHHHHHHH
Confidence            5567899999999887754

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.07  E-value=0.0027  Score=51.02  Aligned_cols=78  Identities=19%  Similarity=0.386  Sum_probs=48.6

Q ss_pred             EcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhc---CcccccEEEEEc
Q psy17502        142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF---NIRGYPTIKFFS  218 (461)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~---~i~~~P~i~~~~  218 (461)
                      .++++..+.......+..++.|..+||+.|....|.+.++|+.. +.+.+-.+.-+.+.++.++|   |....|+++++.
T Consensus        27 ~l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d  105 (129)
T PF14595_consen   27 QLSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLD  105 (129)
T ss_dssp             H--HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-
T ss_pred             CCCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEc
Confidence            35555555443345567888888999999999999999999875 46666655555677776665   566789999997


Q ss_pred             CC
Q psy17502        219 PG  220 (461)
Q Consensus       219 ~~  220 (461)
                      ..
T Consensus       106 ~~  107 (129)
T PF14595_consen  106 KD  107 (129)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.05  E-value=0.0033  Score=45.44  Aligned_cols=54  Identities=24%  Similarity=0.415  Sum_probs=38.4

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhh-----cCcccccEEEEEcCC
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE-----FNIRGYPTIKFFSPG  220 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~-----~~i~~~P~i~~~~~~  220 (461)
                      ++.|+++||++|+.+.+.+.+..      +.+-.+|.+.+......     +++.+.|++ ++.+|
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g   60 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADG   60 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCC
Confidence            56899999999999888776543      34456777666555544     378889997 45554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>KOG3414|consensus

Probab=97.03  E-value=0.0038  Score=48.15  Aligned_cols=68  Identities=15%  Similarity=0.301  Sum_probs=60.9

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN  100 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~  100 (461)
                      ..+.++|.|...|.+.|-++...+.++++.+.+=..+..||.++-+++.+-|++...|++++|-+++.
T Consensus        22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH   89 (142)
T KOG3414|consen   22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH   89 (142)
T ss_pred             cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence            55699999999999999999999999999998877888899999999999999999999888865543

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.02  E-value=0.0045  Score=48.57  Aligned_cols=67  Identities=25%  Similarity=0.471  Sum_probs=46.3

Q ss_pred             cCCCeEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh-------hhh--hcCcccccEEEEE
Q psy17502        154 NSDDIWLVEFFA-------PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR-------IAG--EFNIRGYPTIKFF  217 (461)
Q Consensus       154 ~~~~~~~v~f~~-------~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~-------l~~--~~~i~~~P~i~~~  217 (461)
                      .++.+.+|+|++       +||+.|....|...++-....+...|+.+.+...+.       ...  +++++++||++-+
T Consensus        17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~   96 (119)
T PF06110_consen   17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW   96 (119)
T ss_dssp             TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred             cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence            355788899985       499999999999999888776678888776543222       233  5899999999999


Q ss_pred             cCC
Q psy17502        218 SPG  220 (461)
Q Consensus       218 ~~~  220 (461)
                      ..+
T Consensus        97 ~~~   99 (119)
T PF06110_consen   97 ETG   99 (119)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            865

; PDB: 1V9W_A 1WOU_A.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.02  E-value=0.0038  Score=56.17  Aligned_cols=88  Identities=18%  Similarity=0.192  Sum_probs=66.7

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc---------cHhhhhhcCcccccEEEEEcCCCCCCcC
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV---------HQRIAGEFNIRGYPTIKFFSPGSRSASD  226 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~---------~~~l~~~~~i~~~P~i~~~~~~~~~~~~  226 (461)
                      ++..++.||.+.|+.|..+.+....+++.+.=.+..+.+|..-         +..+++++|+..+|++++....++  ..
T Consensus       150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~--~~  227 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQ--KM  227 (256)
T ss_pred             hceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCC--cE
Confidence            4589999999999999999999999999996445555555431         245789999999999999987743  11


Q ss_pred             cccccCCCCHHHHHHHHHh
Q psy17502        227 AQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       227 ~~~y~g~~~~~~i~~fi~~  245 (461)
                      ...=.|-.+.++|.+-|..
T Consensus       228 ~pv~~G~iS~deL~~Ri~~  246 (256)
T TIGR02739       228 SPLAYGFISQDELKERILN  246 (256)
T ss_pred             EEEeeccCCHHHHHHHHHH
Confidence            2223588899988766644

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.00  E-value=0.0024  Score=45.65  Aligned_cols=51  Identities=20%  Similarity=0.297  Sum_probs=39.6

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhc---CCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH---GVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~P~l~~   94 (461)
                      +..|+.++|++|++....+.+      ..+.+-.+|.++++...+.+   |...+|++++
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~   54 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA   54 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence            357889999999998887764      23778888998877655554   8889999866

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.0083  Score=48.34  Aligned_cols=87  Identities=17%  Similarity=0.336  Sum_probs=62.7

Q ss_pred             hhcCCCeEEEEEeCCCChhhhhhhHHHH---HHHHHhcCceEEEEEeCcc----------------cHhhhhhcCccccc
Q psy17502        152 VYNSDDIWLVEFFAPWCGHCKNLEPHWE---KAASELEGKVKLGAVDATV----------------HQRIAGEFNIRGYP  212 (461)
Q Consensus       152 ~~~~~~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~i~f~~v~~~~----------------~~~l~~~~~i~~~P  212 (461)
                      +...++..++.|-++.|..|..+.....   ++-+.+.+++.+..++++.                .++|++.|++++.|
T Consensus        38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP  117 (182)
T COG2143          38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP  117 (182)
T ss_pred             cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence            3456788999999999999998866433   3455566667777766421                34799999999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHH
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVT  241 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~  241 (461)
                      ++++|...++   ......|-...+++..
T Consensus       118 tfvFfdk~Gk---~Il~lPGY~ppe~Fl~  143 (182)
T COG2143         118 TFVFFDKTGK---TILELPGYMPPEQFLA  143 (182)
T ss_pred             eEEEEcCCCC---EEEecCCCCCHHHHHH
Confidence            9999987643   3444567777776443

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=96.96  E-value=0.00069  Score=56.61  Aligned_cols=31  Identities=19%  Similarity=0.205  Sum_probs=28.8

Q ss_pred             CccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|-|+|.|+|.||+ |.+-.|.+.+|+++|++
T Consensus        22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~   52 (152)
T cd00340          22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKD   52 (152)
T ss_pred             CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC
Confidence            68899999999999 99999999999999864

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.95  E-value=0.0026  Score=45.06  Aligned_cols=51  Identities=20%  Similarity=0.336  Sum_probs=38.7

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~   94 (461)
                      ++.|+++||++|+.+...+.+..      +.+..+|...+.+    +.+..+...+|++++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~   56 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI   56 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            57899999999999988877553      6677888877654    344457788998754

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=96.90  E-value=0.0058  Score=54.67  Aligned_cols=88  Identities=19%  Similarity=0.141  Sum_probs=66.1

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc---------cHhhhhhcCcccccEEEEEcCCCCCCcC
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV---------HQRIAGEFNIRGYPTIKFFSPGSRSASD  226 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~---------~~~l~~~~~i~~~P~i~~~~~~~~~~~~  226 (461)
                      ++..+++||.+.|++|..+.|+...+++.+.=.+..+.+|..-         +...+.++|+..+|++++....++  ..
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~--~~  220 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSG--SV  220 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCC--cE
Confidence            4578999999999999999999999999996455556665422         334667899999999999987743  11


Q ss_pred             cccccCCCCHHHHHHHHHh
Q psy17502        227 AQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       227 ~~~y~g~~~~~~i~~fi~~  245 (461)
                      ...-.|..+.++|.+-+..
T Consensus       221 ~pv~~G~iS~deL~~Ri~~  239 (248)
T PRK13703        221 RPLSYGFITQDDLAKRFLN  239 (248)
T ss_pred             EEEeeccCCHHHHHHHHHH
Confidence            2223588899888766543

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=96.89  E-value=0.0033  Score=45.86  Aligned_cols=55  Identities=22%  Similarity=0.327  Sum_probs=41.2

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc---hhhHhhcCCCCccEEEE
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE---KSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~P~l~~   94 (461)
                      .+.-++.|+.+||++|++....|.+.      .+.+-.+|++++   ..+.+..|...+|.+++
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i   63 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI   63 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence            34458899999999999988887632      266777887765   34555678999999965

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=96.89  E-value=0.0044  Score=52.87  Aligned_cols=84  Identities=10%  Similarity=0.073  Sum_probs=56.3

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHH-hcC-ceEE-EEEeC-----------------------------cccHhhh
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASE-LEG-KVKL-GAVDA-----------------------------TVHQRIA  203 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~-~~~-~i~f-~~v~~-----------------------------~~~~~l~  203 (461)
                      +++.+|.|+|.||++|+...|.+.+++.. +.- +++- .-|+.                             +....+.
T Consensus        59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~  138 (184)
T TIGR01626        59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK  138 (184)
T ss_pred             CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence            78999999999999999999999998642 210 0000 22221                             1233456


Q ss_pred             hhcCcccccEE-EEEcCCCCCCcCcccccCCCCHHHHHHH
Q psy17502        204 GEFNIRGYPTI-KFFSPGSRSASDAQEYNGGRTSQDIVTW  242 (461)
Q Consensus       204 ~~~~i~~~P~i-~~~~~~~~~~~~~~~y~g~~~~~~i~~f  242 (461)
                      ..|++.+.|+- +++...+   .....+.|..+.+++.+.
T Consensus       139 ~~~gv~~~P~T~fVIDk~G---kVv~~~~G~l~~ee~e~~  175 (184)
T TIGR01626       139 NAWQLNSEDSAIIVLDKTG---KVKFVKEGALSDSDIQTV  175 (184)
T ss_pred             HhcCCCCCCceEEEECCCC---cEEEEEeCCCCHHHHHHH
Confidence            68888888766 5666543   245667898888877663

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=96.89  E-value=0.0057  Score=55.39  Aligned_cols=88  Identities=16%  Similarity=0.148  Sum_probs=62.3

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC----------------------------chhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE----------------------------EKSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~----------------------------~~~l~~   82 (461)
                      .++.+++.|| +.||+.|....+.|.+.++++++ .+.+..|.++.                            +..+++
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak  176 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK  176 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence            3456777777 89999999999999999999864 36666666553                            124778


Q ss_pred             hcCCC-----CccEEEEEc-CCCCCccc----cCCcchhHHHHHHHHH
Q psy17502         83 SHGVT-----GFPTVKIFS-DKRNPTPY----QGARTADAIIDVALEA  120 (461)
Q Consensus        83 ~~~i~-----~~P~l~~~~-~g~~~~~y----~g~~~~~~i~~~i~~~  120 (461)
                      .||+.     ..|+.+++. +|.....+    ...++.++++..+...
T Consensus       177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            88885     479999997 55433322    3456788888777543

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=96.88  E-value=0.0068  Score=48.45  Aligned_cols=44  Identities=14%  Similarity=0.371  Sum_probs=37.3

Q ss_pred             CCCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc
Q psy17502        155 SDDIWLVEFFAP-WCGHCKNLEPHWEKAASELEG-KVKLGAVDATV  198 (461)
Q Consensus       155 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~  198 (461)
                      .+++++|.||+. ||+.|....+.+.++...++. .+.+..|..+.
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~   69 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDD   69 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccc
Confidence            458999999998 999999999999999998875 58887776543

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.82  E-value=0.013  Score=45.28  Aligned_cols=89  Identities=17%  Similarity=0.318  Sum_probs=66.0

Q ss_pred             ccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcC-----
Q psy17502         23 TSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD-----   97 (461)
Q Consensus        23 ~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~-----   97 (461)
                      .++..+ ++...+.++|-|+..--.   .....|.++|..+++.+.|+...   +.++.+++++  .|++++|+.     
T Consensus         8 ~~~l~~-f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~   78 (104)
T cd03069           8 EAEFEK-FLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSN   78 (104)
T ss_pred             HHHHHH-HhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhc
Confidence            345666 677788888888766444   45678999999998888887665   4577888888  788888831     


Q ss_pred             --CCCCccccCCcchhHHHHHHHHH
Q psy17502         98 --KRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        98 --g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                        ......|.|..+.+.|.+|+...
T Consensus        79 k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          79 KFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             ccCcccccccCcCCHHHHHHHHHhh
Confidence              12335699988899999999753

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>PLN02412 probable glutathione peroxidase

Probab=96.81  E-value=0.0013  Score=55.92  Aligned_cols=32  Identities=25%  Similarity=0.223  Sum_probs=29.7

Q ss_pred             CccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|-|||.|+|+||+.|++-.|.+.+|.++|++
T Consensus        29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~   60 (167)
T PLN02412         29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKE   60 (167)
T ss_pred             CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999999999874

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.79  E-value=0.0039  Score=63.36  Aligned_cols=99  Identities=13%  Similarity=0.200  Sum_probs=78.4

Q ss_pred             CCceEcCccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      ..-..|+++.-+. +.+ .++.-+-.|+++.|++|......+.+++.... .|..-.+|..+.++++++|++.++|++++
T Consensus        99 ~~~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i  176 (515)
T TIGR03140        99 GHGPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL  176 (515)
T ss_pred             CCCCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE
Confidence            3445666766665 433 44567999999999999999999988887754 58888899999999999999999999987


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                        +|+  ..+.|..+.+++.+.+.+.
T Consensus       177 --~~~--~~~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       177 --NGE--EFHNGRMDLAELLEKLEET  198 (515)
T ss_pred             --CCc--EEEecCCCHHHHHHHHhhc
Confidence              443  3478888888887777654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK13599 putative peroxiredoxin; Provisional

Probab=96.76  E-value=0.0066  Score=53.68  Aligned_cols=87  Identities=16%  Similarity=0.157  Sum_probs=61.6

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc---------------------------hhhHhhc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE---------------------------KSLSSSH   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~---------------------------~~l~~~~   84 (461)
                      .+..+|+.|++.||+.|....+.|.+++.++.. .+.++.|+++..                           ..+++.|
T Consensus        28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y  107 (215)
T PRK13599         28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL  107 (215)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence            333457788899999999999999999999864 377777776642                           2367778


Q ss_pred             CCC-------CccEEEEEc-CCCCCcc--c--cCCcchhHHHHHHHH
Q psy17502         85 GVT-------GFPTVKIFS-DKRNPTP--Y--QGARTADAIIDVALE  119 (461)
Q Consensus        85 ~i~-------~~P~l~~~~-~g~~~~~--y--~g~~~~~~i~~~i~~  119 (461)
                      |+.       ..|+++++. +|.....  |  ...++.+++...+..
T Consensus       108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~  154 (215)
T PRK13599        108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA  154 (215)
T ss_pred             CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            873       579999997 5533222  2  224677888887764

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.74  E-value=0.0059  Score=46.16  Aligned_cols=59  Identities=36%  Similarity=0.469  Sum_probs=44.9

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec--CCc------------------------------hhhHhhcC
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA--DEE------------------------------KSLSSSHG   85 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~--~~~------------------------------~~l~~~~~   85 (461)
                      ++.|+++.|++|..+.+.+.++.....+++.+..+..  ...                              ..++++.|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999866666665555443  221                              23567789


Q ss_pred             CCCccEEEEEc
Q psy17502         86 VTGFPTVKIFS   96 (461)
Q Consensus        86 i~~~P~l~~~~   96 (461)
                      +.++|++++..
T Consensus        81 ~~g~Pt~v~~~   91 (98)
T cd02972          81 VTGTPTFVVNG   91 (98)
T ss_pred             CCCCCEEEECC
Confidence            99999999865

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=96.73  E-value=0.0053  Score=46.89  Aligned_cols=57  Identities=21%  Similarity=0.325  Sum_probs=38.8

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh-------hHhhcCCCCccEEEE
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS-------LSSSHGVTGFPTVKI   94 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~-------l~~~~~i~~~P~l~~   94 (461)
                      .+++++  ++.|..+||++|+++...|.+.      .+.+..+|.++.++       +.+..|.+.+|.+++
T Consensus         4 ~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi   67 (99)
T TIGR02189         4 MVSEKA--VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV   67 (99)
T ss_pred             hhccCC--EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence            455555  7789999999999988766543      24555677765533       333446789999844

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PRK13189 peroxiredoxin; Provisional

Probab=96.70  E-value=0.0077  Score=53.60  Aligned_cols=85  Identities=12%  Similarity=0.102  Sum_probs=58.9

Q ss_pred             eEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc---------------------------hhhHhhcCCC
Q psy17502         36 VWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE---------------------------KSLSSSHGVT   87 (461)
Q Consensus        36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~---------------------------~~l~~~~~i~   87 (461)
                      .+|+.|++.||+.|....++|.+.+++++. .+.++.|+++..                           ..+++.||+.
T Consensus        38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~  117 (222)
T PRK13189         38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI  117 (222)
T ss_pred             EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence            555677799999999999999999999864 366666665521                           2467778865


Q ss_pred             -------CccEEEEEc-CCCCCcc----ccCCcchhHHHHHHHHH
Q psy17502         88 -------GFPTVKIFS-DKRNPTP----YQGARTADAIIDVALEA  120 (461)
Q Consensus        88 -------~~P~l~~~~-~g~~~~~----y~g~~~~~~i~~~i~~~  120 (461)
                             ..|+.+++. +|.....    ....++.+++...+...
T Consensus       118 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        118 SPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             ccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence                   468888887 5532212    23456778888877654

>KOG0911|consensus

Probab=96.69  E-value=0.015  Score=50.24  Aligned_cols=77  Identities=16%  Similarity=0.335  Sum_probs=65.4

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccC
Q psy17502        153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG  232 (461)
Q Consensus       153 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g  232 (461)
                      .......++.|+++||..|..+...+..+++.. ..+.|+.++.+..++++..+.+...|..+.+..+    ....+..|
T Consensus        14 ~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~----~~v~~l~~   88 (227)
T KOG0911|consen   14 DQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG----EKVDRLSG   88 (227)
T ss_pred             HhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecc----hhhhhhhc
Confidence            346778899999999999999999999999988 7899999999999999999999999999998766    23444455


Q ss_pred             CC
Q psy17502        233 GR  234 (461)
Q Consensus       233 ~~  234 (461)
                      ..
T Consensus        89 ~~   90 (227)
T KOG0911|consen   89 AD   90 (227)
T ss_pred             cC
Confidence            43

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=96.67  E-value=0.0019  Score=54.09  Aligned_cols=32  Identities=22%  Similarity=0.201  Sum_probs=29.3

Q ss_pred             CccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|-|||.|.|+||+.|++-.|.+.+++++|++
T Consensus        22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~   53 (153)
T TIGR02540        22 GKVSLVVNVASECGFTDQNYRALQELHRELGP   53 (153)
T ss_pred             CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh
Confidence            67799999999999999999999999999864

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.62  E-value=0.0087  Score=43.01  Aligned_cols=51  Identities=24%  Similarity=0.331  Sum_probs=37.6

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhH----hhcCCC-CccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS----SSHGVT-GFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~P~l~~   94 (461)
                      ++.|+.+||++|+++...|.+.      .+.+-.+|++.+++..    +..+.. .+|++++
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i   57 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI   57 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence            5788999999999988777642      3677788888765443    345766 8998854

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PHA03050 glutaredoxin; Provisional

Probab=96.61  E-value=0.0065  Score=47.16  Aligned_cols=60  Identities=15%  Similarity=0.221  Sum_probs=40.9

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC---c----hhhHhhcCCCCccEEEE
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE---E----KSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~---~----~~l~~~~~i~~~P~l~~   94 (461)
                      .+++++  ++.|..+||++|++....|.+..-...   .+-.+|.++   .    ..+.+.-|.+.+|++++
T Consensus         9 ~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI   75 (108)
T PHA03050          9 RLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF   75 (108)
T ss_pred             HhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence            555655  788999999999998887766532211   355556654   2    23555668889999955

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.59  E-value=0.0094  Score=42.65  Aligned_cols=51  Identities=16%  Similarity=0.191  Sum_probs=39.1

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~   94 (461)
                      ++.|+.+||++|+++...+++.      .+.+-.+|+.+++.    +.+..+-..+|++++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i   57 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF   57 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            6788999999999988777742      36777888887654    555567788999855

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.57  E-value=0.011  Score=43.29  Aligned_cols=71  Identities=17%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhH---hhcCCCCccEEEEEcCCCCCccccCCcchhHHH
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS---SSHGVTGFPTVKIFSDKRNPTPYQGARTADAII  114 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~---~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~  114 (461)
                      ++.|+.+||++|++....|.+      ..|.|-.+|++++++..   +..|...+|++++  ++.    .-+....+.|.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~----~~~Gf~~~~l~   70 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL----SWSGFRPDMIN   70 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE----EEecCCHHHHH
Confidence            678899999999998877743      23788889998877533   3457788999965  321    23456677777


Q ss_pred             HHHHHH
Q psy17502        115 DVALEA  120 (461)
Q Consensus       115 ~~i~~~  120 (461)
                      +.+..+
T Consensus        71 ~~~~~~   76 (81)
T PRK10329         71 RLHPAP   76 (81)
T ss_pred             HHHHhh
Confidence            776654

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=96.53  E-value=0.0069  Score=44.10  Aligned_cols=51  Identities=22%  Similarity=0.380  Sum_probs=37.3

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhh----HhhcCCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL----SSSHGVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~P~l~~   94 (461)
                      ++.|+.+||++|++....+.+.      .+.+-.+|++.+++.    .+..|...+|++++
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i   55 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI   55 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence            3678899999999998888743      256677777766544    34457888999854

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=96.52  E-value=0.021  Score=44.88  Aligned_cols=98  Identities=19%  Similarity=0.293  Sum_probs=69.2

Q ss_pred             hhHHHh-cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCcc-EEEEEcCCCCC--
Q psy17502         26 FDDKVI-KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFP-TVKIFSDKRNP--  101 (461)
Q Consensus        26 f~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P-~l~~~~~g~~~--  101 (461)
                      -++.++ ++++.+++.|...|-+.|.++-..+.++|++.++-..++.||.++-+++.+-|.+. -| |+++|.+++..  
T Consensus        11 VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm~v   89 (133)
T PF02966_consen   11 VDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHMMV   89 (133)
T ss_dssp             HHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEEEE
T ss_pred             HHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEEEE
Confidence            344333 46679999999999999999999999999999887899999999999999999999 77 46555332221  


Q ss_pred             -------ccccCCc-chhHHHHHHHHHHhhh
Q psy17502        102 -------TPYQGAR-TADAIIDVALEAIRQK  124 (461)
Q Consensus       102 -------~~y~g~~-~~~~i~~~i~~~~~~~  124 (461)
                             .+..+.. +.++++.-+.-..+..
T Consensus        90 D~GtgnnnKin~~~~~kqe~iDiie~iyrga  120 (133)
T PF02966_consen   90 DFGTGNNNKINWAFEDKQEFIDIIETIYRGA  120 (133)
T ss_dssp             ESSSSSSSSBCS--SCHHHHHHHHHHHHHHH
T ss_pred             EecCCCccEEEEEcCcHHHHHHHHHHHHHHh
Confidence                   2344443 3566666665554444

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.52  E-value=0.012  Score=43.03  Aligned_cols=80  Identities=18%  Similarity=0.313  Sum_probs=58.2

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHH
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDI  239 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i  239 (461)
                      ++.|..+.|.-|......+.+++...  .+.+-.+|++.++++..+|+.. .|.+.+-....-  .......+.++.+.+
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~~-IPVl~~~~~~~~--~~~~~~~~~~d~~~L   76 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGYR-IPVLHIDGIRQF--KEQEELKWRFDEEQL   76 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCTS-TSEEEETT-GGG--CTSEEEESSB-HHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcCC-CCEEEEcCcccc--cccceeCCCCCHHHH
Confidence            57888999999998888888765443  4888899999999999999975 898766442210  113445677899999


Q ss_pred             HHHHH
Q psy17502        240 VTWAL  244 (461)
Q Consensus       240 ~~fi~  244 (461)
                      .+|+.
T Consensus        77 ~~~L~   81 (81)
T PF05768_consen   77 RAWLE   81 (81)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99874

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>KOG1672|consensus

Probab=96.43  E-value=0.0084  Score=50.27  Aligned_cols=79  Identities=23%  Similarity=0.365  Sum_probs=66.9

Q ss_pred             eeEc-ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        140 VVEL-TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       140 v~~l-~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      ...+ ++.+|-+... ...-+++-||-+.-..|+-+-..++.+|+.+- ..+|.+|++...+=++.+++|+-.|++.+|+
T Consensus        68 y~ev~~Ekdf~~~~~-kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~k  145 (211)
T KOG1672|consen   68 YEEVASEKDFFEEVK-KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALFK  145 (211)
T ss_pred             EEEeccHHHHHHHhh-cCceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEEE
Confidence            4444 5777777654 45668899999888889999999999998874 6899999999999999999999999999999


Q ss_pred             CC
Q psy17502        219 PG  220 (461)
Q Consensus       219 ~~  220 (461)
                      +|
T Consensus       146 ~g  147 (211)
T KOG1672|consen  146 NG  147 (211)
T ss_pred             cC
Confidence            88

>KOG3425|consensus

Probab=96.40  E-value=0.019  Score=44.11  Aligned_cols=65  Identities=20%  Similarity=0.333  Sum_probs=50.3

Q ss_pred             CCCeEEEEEeC--------CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-------hhhhhcCc-ccccEEEEEc
Q psy17502        155 SDDIWLVEFFA--------PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-------RIAGEFNI-RGYPTIKFFS  218 (461)
Q Consensus       155 ~~~~~~v~f~~--------~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-------~l~~~~~i-~~~P~i~~~~  218 (461)
                      +++..+|+|++        +||+.|....|.+.++-+....++.|.++++..-+       ......++ ...||++=+.
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~  103 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK  103 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence            34558899985        49999999999999999988788999999875432       34445565 7789988887


Q ss_pred             C
Q psy17502        219 P  219 (461)
Q Consensus       219 ~  219 (461)
                      .
T Consensus       104 ~  104 (128)
T KOG3425|consen  104 R  104 (128)
T ss_pred             C
Confidence            4

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=96.40  E-value=0.0099  Score=44.01  Aligned_cols=76  Identities=18%  Similarity=0.251  Sum_probs=52.8

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc----HhhhhhcC--cccccEEEEEcCCCCCCcCcccccC
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH----QRIAGEFN--IRGYPTIKFFSPGSRSASDAQEYNG  232 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~----~~l~~~~~--i~~~P~i~~~~~~~~~~~~~~~y~g  232 (461)
                      -++.|..+||++|......+++++..+ ..+.+..+|.+.+    .++....+  ..++|+|++  +|     +.   -|
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g-----~~---ig   70 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQ-----KH---IG   70 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CC-----EE---Ec
Confidence            367889999999999999999998765 4677777777653    24544444  467899764  44     11   12


Q ss_pred             CCCHHHHHHHHHhhc
Q psy17502        233 GRTSQDIVTWALNKY  247 (461)
Q Consensus       233 ~~~~~~i~~fi~~~~  247 (461)
                        ..++|.+++..++
T Consensus        71 --g~~~~~~~~~~~~   83 (85)
T PRK11200         71 --GCTDFEAYVKENL   83 (85)
T ss_pred             --CHHHHHHHHHHhc
Confidence              3477888777654

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.36  E-value=0.016  Score=41.33  Aligned_cols=51  Identities=18%  Similarity=0.310  Sum_probs=37.4

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh---hHhhcCCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS---LSSSHGVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~P~l~~   94 (461)
                      +++|..+||+.|.+....+.+.      .+.+-.+|.+++..   +.+..|...+|.+++
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi   56 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI   56 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE
Confidence            6889999999999988777642      36677778766542   334458889999843

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=96.34  E-value=0.0088  Score=45.82  Aligned_cols=79  Identities=16%  Similarity=0.301  Sum_probs=56.9

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhh---hHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNL---EPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~---~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      ...++..+++.++ ..... .|.|++..|..+.+.   .-++-++.+.+.+.+..+.+.-..+.++..+||+..+|++++
T Consensus        11 ~~~vd~~~ld~~l-~~~~~-~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf   88 (107)
T PF07449_consen   11 WPRVDADTLDAFL-AAPGD-AVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVF   88 (107)
T ss_dssp             EEEE-CCCHHHHH-HCCSC-EEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred             CeeechhhHHHHH-hCCCc-EEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEE
Confidence            5677888888876 44444 445555544444444   337777888888888888887667889999999999999999


Q ss_pred             EcCC
Q psy17502        217 FSPG  220 (461)
Q Consensus       217 ~~~~  220 (461)
                      ++.|
T Consensus        89 ~R~g   92 (107)
T PF07449_consen   89 FRDG   92 (107)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9998

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.31  E-value=0.021  Score=39.00  Aligned_cols=51  Identities=18%  Similarity=0.329  Sum_probs=37.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhh----hhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA----GEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~----~~~~i~~~P~i~~  216 (461)
                      ++.|..++|++|......+++      ..+.+..+|.+.+++..    +..|..++|++++
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            467889999999988877744      34777778877664433    3348889999886

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=96.25  E-value=0.031  Score=48.96  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=57.8

Q ss_pred             CCeEEEEEEC-CCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHhh
Q psy17502         34 DEVWIVEYYA-PWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSSS   83 (461)
Q Consensus        34 ~~~~lv~f~~-~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~~   83 (461)
                      ++.++|.||+ .||+.|....+++.++++++.. .+.++.|+++..                            .++++.
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~  115 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS  115 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence            5688889995 7899999989999999999875 377777776532                            136677


Q ss_pred             cCCC------CccEEEEEc-CCCCCccc----cCCcchhHHHHHHHH
Q psy17502         84 HGVT------GFPTVKIFS-DKRNPTPY----QGARTADAIIDVALE  119 (461)
Q Consensus        84 ~~i~------~~P~l~~~~-~g~~~~~y----~g~~~~~~i~~~i~~  119 (461)
                      ||+.      .+|+.+++. +|.....+    ...++.++++..+..
T Consensus       116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a  162 (199)
T PTZ00253        116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA  162 (199)
T ss_pred             cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence            7874      368888887 44322221    223455566665543

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=96.25  E-value=0.0051  Score=50.60  Aligned_cols=33  Identities=12%  Similarity=0.198  Sum_probs=29.8

Q ss_pred             CCccEEEEEecCcchh-hhhchhHHHHHHHHHhh
Q psy17502        427 SDEVWIVEYYAPWCGH-CQSFKDEYMKLATALKV  459 (461)
Q Consensus       427 ~~kdvlv~fyapwC~~-Ck~l~p~~~~la~~~k~  459 (461)
                      .+|-++|.|+++||+. |.+..|.+.++.+.|++
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~   54 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA   54 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence            4688999999999997 99999999999998864

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=96.25  E-value=0.011  Score=49.05  Aligned_cols=79  Identities=19%  Similarity=0.349  Sum_probs=53.3

Q ss_pred             eEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhH-HHHH--HHHHhcCceEEEEEeCcccHhhhhhc--------Ccc
Q psy17502        141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEP-HWEK--AASELEGKVKLGAVDATVHQRIAGEF--------NIR  209 (461)
Q Consensus       141 ~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~-~~~~--~a~~~~~~i~f~~v~~~~~~~l~~~~--------~i~  209 (461)
                      ....++.++.. .+.+++++|.++.+||..|..+.. .|..  +|..+...+.-+.+|.++.+++...|        |..
T Consensus        23 ~~w~~ea~~~A-k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~g  101 (163)
T PF03190_consen   23 QPWGEEALEKA-KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSG  101 (163)
T ss_dssp             B-SSHHHHHHH-HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS--
T ss_pred             ccCCHHHHHHH-HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCC
Confidence            34456667664 577899999999999999998865 5544  77777777788889998888887777        788


Q ss_pred             cccEEEEEcCC
Q psy17502        210 GYPTIKFFSPG  220 (461)
Q Consensus       210 ~~P~i~~~~~~  220 (461)
                      ++|+.++..+.
T Consensus       102 GwPl~vfltPd  112 (163)
T PF03190_consen  102 GWPLTVFLTPD  112 (163)
T ss_dssp             -SSEEEEE-TT
T ss_pred             CCCceEEECCC
Confidence            99999988876

; PDB: 3IRA_A.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=96.23  E-value=0.024  Score=46.43  Aligned_cols=41  Identities=10%  Similarity=0.111  Sum_probs=32.3

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC
Q psy17502        156 DDIWLVEFF-APWCGHCKNLEPHWEKAASELEG-KVKLGAVDA  196 (461)
Q Consensus       156 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~  196 (461)
                      +++++|.|+ +.||+.|....+.+.+++..+.+ .+.+..|..
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~   65 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSP   65 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence            578888888 58999999999999999888863 466666543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PRK13191 putative peroxiredoxin; Provisional

Probab=96.22  E-value=0.029  Score=49.62  Aligned_cols=85  Identities=13%  Similarity=0.125  Sum_probs=59.2

Q ss_pred             eEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc---------------------------hhhHhhcCCC
Q psy17502         36 VWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE---------------------------KSLSSSHGVT   87 (461)
Q Consensus        36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~---------------------------~~l~~~~~i~   87 (461)
                      .+|+.|++.||+.|....+.|.+.+.+++. .+.++.|+++..                           .+++++||+.
T Consensus        36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~  115 (215)
T PRK13191         36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMI  115 (215)
T ss_pred             EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCc
Confidence            455577899999999999999999999864 366777766532                           1356677763


Q ss_pred             -------CccEEEEEc-CCCCCcc--c--cCCcchhHHHHHHHHH
Q psy17502         88 -------GFPTVKIFS-DKRNPTP--Y--QGARTADAIIDVALEA  120 (461)
Q Consensus        88 -------~~P~l~~~~-~g~~~~~--y--~g~~~~~~i~~~i~~~  120 (461)
                             ..|+.+++. +|.....  |  ...++.++++..+...
T Consensus       116 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        116 HAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             ccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence                   368888887 4432222  1  2346888888888654

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=96.04  E-value=0.022  Score=48.66  Aligned_cols=36  Identities=19%  Similarity=0.424  Sum_probs=27.1

Q ss_pred             EEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC
Q psy17502         40 EYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD   75 (461)
Q Consensus        40 ~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~   75 (461)
                      +|+.|.|+.|-.+.|.+.++..++++++.+-.|=..
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~   37 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGG   37 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEcc
Confidence            699999999999999999999999987666555443

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.028  Score=40.97  Aligned_cols=52  Identities=19%  Similarity=0.337  Sum_probs=37.3

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-----hhHhhc-CCCCccEEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-----SLSSSH-GVTGFPTVKIF   95 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-----~l~~~~-~i~~~P~l~~~   95 (461)
                      ++.|..++|++|++....+.+      ..+.+..+|.+.+.     +..++. |.+.+|.|++=
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~   60 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIG   60 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEEC
Confidence            678899999999998776662      23667777766554     334444 78999998873

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=95.81  E-value=0.012  Score=48.80  Aligned_cols=32  Identities=22%  Similarity=0.446  Sum_probs=26.6

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      ++.++|.|| +.||+.|++-.|.+.++.+.+++
T Consensus        23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~   55 (149)
T cd02970          23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDA   55 (149)
T ss_pred             CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh
Confidence            355666666 99999999999999999998853

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=95.81  E-value=0.044  Score=41.68  Aligned_cols=59  Identities=19%  Similarity=0.169  Sum_probs=39.7

Q ss_pred             HhcCCCeEEEEEE---CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502         30 VIKSDEVWIVEYY---APWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI   94 (461)
Q Consensus        30 ~~~~~~~~lv~f~---~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~   94 (461)
                      +++++++++..=.   +|||++|++....|.+.      .+.+..+|..++++    +.+..|...+|.+++
T Consensus         8 ~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi   73 (97)
T TIGR00365         8 QIKENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV   73 (97)
T ss_pred             HhccCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence            5666654333222   38999999988777653      25677888876654    444557788999865

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=95.78  E-value=0.13  Score=39.89  Aligned_cols=96  Identities=15%  Similarity=0.288  Sum_probs=63.0

Q ss_pred             ceeecCHHHHHHHhcCC-CeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCC
Q psy17502        256 IKQIVSEATFKEACEDH-PLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGY  334 (461)
Q Consensus       256 v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~  334 (461)
                      +.++++...+..+.... ..++++++...       .....+.+.++|..+|+.. .|....   ...+...+++.   .
T Consensus         2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~-------~~~~~~~F~~vA~~~Rdd~-~F~~t~---~~~~~~~~~~~---~   67 (107)
T cd03068           2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGE-------EDPAYQLYQDAANSLREDY-KFHHTF---DSEIFKSLKVS---P   67 (107)
T ss_pred             ceEcCCHHHHHHHHhcCCCEEEEEEECCC-------CCHHHHHHHHHHHhcccCC-EEEEEC---hHHHHHhcCCC---C
Confidence            45567777788777665 78888886431       1134567889999998875 454333   23566777775   5


Q ss_pred             ccEEEEccCc--ccc----ccCCCC-CCHHH-HHHHHHH
Q psy17502        335 PAMAVLNAKK--MKY----SLLKGP-FSYDG-INEFLRD  365 (461)
Q Consensus       335 P~l~i~~~~~--~k~----~~~~~~-~~~~~-i~~Fi~~  365 (461)
                      |.++++.|..  .||    ..|.+. .+.++ |.+|++.
T Consensus        68 ~~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          68 GQLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             CceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence            7888887664  233    334555 66655 9999975

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=95.75  E-value=0.032  Score=39.47  Aligned_cols=51  Identities=18%  Similarity=0.357  Sum_probs=35.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhc----CcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF----NIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~----~i~~~P~i~~  216 (461)
                      ++.|+++||++|..+...+.+.      .+.+..++.+.+....+.+    +..++|++++
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~   56 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI   56 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence            5678999999999877766552      3556666666554443333    5778999876

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=95.64  E-value=0.042  Score=46.60  Aligned_cols=53  Identities=17%  Similarity=0.362  Sum_probs=41.2

Q ss_pred             CCeEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCceEEEEEeCcc---cHhhhhhcCcc
Q psy17502        156 DDIWLVEFFAPW-CGHCKNLEPHWEKAASELEGKVKLGAVDATV---HQRIAGEFNIR  209 (461)
Q Consensus       156 ~~~~~v~f~~~~-c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~---~~~l~~~~~i~  209 (461)
                      +++++|.||+.| |+.|....+.+.++++.+. .+.+..+..+.   ..++++++++.
T Consensus        44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~  100 (167)
T PRK00522         44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLE  100 (167)
T ss_pred             CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCC
Confidence            568999999999 9999999999999999884 67777776553   33456666654

>PTZ00256 glutathione peroxidase; Provisional

Probab=95.59  E-value=0.012  Score=50.79  Aligned_cols=32  Identities=22%  Similarity=0.183  Sum_probs=27.0

Q ss_pred             CccE-EEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVW-IVEYYAPWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdv-lv~fyapwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|-| |+.+.|.||+.|++-.|.++++.++|++
T Consensus        40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~   72 (183)
T PTZ00256         40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS   72 (183)
T ss_pred             CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence            5644 5566899999999999999999999874

>KOG3170|consensus

Probab=95.58  E-value=0.056  Score=45.60  Aligned_cols=83  Identities=14%  Similarity=0.224  Sum_probs=64.9

Q ss_pred             CCceEcCccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ..|..++..+|.+.+.+.+  -.|+|..|...-+.|+-+...++++|.++.. +.|+++-.+..-   ..|-=...|||+
T Consensus        91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~cI---pNYPe~nlPTl~  166 (240)
T KOG3170|consen   91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTCI---PNYPESNLPTLL  166 (240)
T ss_pred             cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccccc---CCCcccCCCeEE
Confidence            4588999999998775433  3788899999999999999999999999875 888887765442   234446789999


Q ss_pred             EEcCCCCCc
Q psy17502         94 IFSDKRNPT  102 (461)
Q Consensus        94 ~~~~g~~~~  102 (461)
                      +|..|....
T Consensus       167 VY~~G~lk~  175 (240)
T KOG3170|consen  167 VYHHGALKK  175 (240)
T ss_pred             EeecchHHh
Confidence            999775443

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.58  E-value=0.03  Score=40.93  Aligned_cols=53  Identities=17%  Similarity=0.265  Sum_probs=37.4

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc-H----hhhhhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH-Q----RIAGEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~-~----~l~~~~~i~~~P~i~~  216 (461)
                      ++.|+++||++|..+...+.++..    .+.+..++...+ .    .+.+..|..++|.+++
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~   59 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI   59 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence            577889999999999988888654    455666665433 2    3445568888998743

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=95.52  E-value=0.049  Score=44.80  Aligned_cols=56  Identities=14%  Similarity=0.300  Sum_probs=41.7

Q ss_pred             CCeEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCceEEEEEeCccc---HhhhhhcCccccc
Q psy17502        156 DDIWLVEFFAPW-CGHCKNLEPHWEKAASELEGKVKLGAVDATVH---QRIAGEFNIRGYP  212 (461)
Q Consensus       156 ~~~~~v~f~~~~-c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~---~~l~~~~~i~~~P  212 (461)
                      ++++++.||+.| |++|....+.+.++++.++ .+.+..|..+..   .++.+++++..+|
T Consensus        26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~   85 (143)
T cd03014          26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVT   85 (143)
T ss_pred             CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence            568999999988 6999999999999999885 677877776543   3344555554444

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK10638 glutaredoxin 3; Provisional

Probab=95.52  E-value=0.047  Score=40.12  Aligned_cols=51  Identities=20%  Similarity=0.282  Sum_probs=37.9

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~   94 (461)
                      ++.|..+||++|++....+.+.      .+.+..+|++.+++    +.+..|...+|++++
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~   58 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI   58 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            5688899999999988777643      26677788876653    445567888998854

>KOG3414|consensus

Probab=95.50  E-value=0.098  Score=40.57  Aligned_cols=75  Identities=13%  Similarity=0.280  Sum_probs=62.7

Q ss_pred             hhhhhhhh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCC
Q psy17502        146 SNFEKLVY-NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG  220 (461)
Q Consensus       146 ~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~  220 (461)
                      .+.++.+. ...+.+++-|-.+|.+.|-.+-..+.++|..+.+-..++.+|.++-+++-+-|++...|++++|-++
T Consensus        12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~   87 (142)
T KOG3414|consen   12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN   87 (142)
T ss_pred             HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence            34444443 3467888899999999999999999999999988788888999988899999999999999888765

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=95.47  E-value=0.016  Score=47.99  Aligned_cols=31  Identities=3%  Similarity=0.094  Sum_probs=27.2

Q ss_pred             ccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        429 EVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       429 kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      |.++|.|+ ++||..|.+-.|.+.+++++|++
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~   60 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEA   60 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh
Confidence            67777777 99999999999999999998863

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=95.41  E-value=0.04  Score=40.81  Aligned_cols=75  Identities=19%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc----cHhhhhhcCc--ccccEEEEEcCCCCCCcCcccccCC
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV----HQRIAGEFNI--RGYPTIKFFSPGSRSASDAQEYNGG  233 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~----~~~l~~~~~i--~~~P~i~~~~~~~~~~~~~~~y~g~  233 (461)
                      ++.|..+||++|......+.++.... ..+.+..+|.+.    ..++....+-  .++|+|++  ++     .   +-| 
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g-----~---~ig-   69 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DE-----K---HVG-   69 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CC-----E---Eec-
Confidence            56788999999999998888876443 246676777653    2345555563  67899854  33     1   122 


Q ss_pred             CCHHHHHHHHHhhc
Q psy17502        234 RTSQDIVTWALNKY  247 (461)
Q Consensus       234 ~~~~~i~~fi~~~~  247 (461)
                       ..++|.+++.++.
T Consensus        70 -G~~dl~~~~~~~~   82 (86)
T TIGR02183        70 -GCTDFEQLVKENF   82 (86)
T ss_pred             -CHHHHHHHHHhcc
Confidence             2478888876643

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=95.38  E-value=0.061  Score=40.25  Aligned_cols=59  Identities=22%  Similarity=0.349  Sum_probs=38.7

Q ss_pred             HhcCCCeEEEEEE---CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502         30 VIKSDEVWIVEYY---APWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI   94 (461)
Q Consensus        30 ~~~~~~~~lv~f~---~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~   94 (461)
                      .+++++++++.=.   .|||++|++....+.+.      .+.+..+|...+++    +.+..|-..+|.+++
T Consensus         4 ~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi   69 (90)
T cd03028           4 LIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV   69 (90)
T ss_pred             hhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence            4566653333221   27999999988777654      26677788776654    344457888999854

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=95.35  E-value=0.018  Score=49.27  Aligned_cols=32  Identities=9%  Similarity=0.108  Sum_probs=29.0

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|-|+|.|| +.||.+|..-.|.+.++++.|++
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~   61 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK   61 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH
Confidence            578999999 89999999999999999999864

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=95.25  E-value=0.11  Score=43.33  Aligned_cols=42  Identities=17%  Similarity=0.172  Sum_probs=32.5

Q ss_pred             CCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc
Q psy17502        156 DDIWLVEFFAP-WCGHCKNLEPHWEKAASELEG-KVKLGAVDAT  197 (461)
Q Consensus       156 ~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~  197 (461)
                      +++++|.|++. ||+.|....+.+.++++.+.+ .+.+..|..+
T Consensus        30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d   73 (154)
T PRK09437         30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD   73 (154)
T ss_pred             CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            46788889875 688899989999998888864 4777666554

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=95.08  E-value=0.14  Score=39.09  Aligned_cols=77  Identities=17%  Similarity=0.250  Sum_probs=53.6

Q ss_pred             Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH----hhhhhcCccc-ccEEEEE
Q psy17502        144 TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ----RIAGEFNIRG-YPTIKFF  217 (461)
Q Consensus       144 ~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~----~l~~~~~i~~-~P~i~~~  217 (461)
                      +.+++++++.. .++++++.=.+..|+-+......|++.+....+.+.++.+|.-+++    .+++++||.- -|.++++
T Consensus         6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili   85 (105)
T PF11009_consen    6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI   85 (105)
T ss_dssp             SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred             CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence            56677776543 3677777778899999989999999999888766999999886644    5688999873 5999999


Q ss_pred             cCC
Q psy17502        218 SPG  220 (461)
Q Consensus       218 ~~~  220 (461)
                      ++|
T Consensus        86 ~~g   88 (105)
T PF11009_consen   86 KNG   88 (105)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            998

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=95.04  E-value=0.16  Score=45.58  Aligned_cols=81  Identities=17%  Similarity=0.320  Sum_probs=55.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEE----------------------------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV----------------------------------------  194 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v----------------------------------------  194 (461)
                      +.+..++.|..+.|++|+.+.+.+.++.+   ..+.+..+                                        
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~  182 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA  182 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence            45678889999999999998887776532   11111111                                        


Q ss_pred             ----eCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        195 ----DATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       195 ----~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                          +...+.++++++||.+.|+++ +.+|     .  ...|..+.+.|.+++...
T Consensus       183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G-----~--~~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG-----T--LVPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccchHHHhHHHHHHcCCccccEEE-EcCC-----e--EeeCCCCHHHHHHHHHHc
Confidence                011233588899999999998 5555     2  347888999999998653

>TIGR03137 AhpC peroxiredoxin

Probab=95.01  E-value=0.026  Score=48.91  Aligned_cols=32  Identities=16%  Similarity=0.200  Sum_probs=29.0

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|-|+|.|| +.||..|..-.|.+.++.+.|++
T Consensus        31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~   63 (187)
T TIGR03137        31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKK   63 (187)
T ss_pred             CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh
Confidence            678999999 99999999999999999998863

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=94.83  E-value=0.032  Score=45.61  Aligned_cols=32  Identities=13%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             CCccEEEEEe-cCcchhhhhchhHHHHHHHHHh
Q psy17502        427 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALK  458 (461)
Q Consensus       427 ~~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k  458 (461)
                      .+|-++|.|+ +.||..|....|.+.+++++|+
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~   53 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFA   53 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH
Confidence            4788899988 7999999999999999999885

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=94.80  E-value=0.1  Score=37.94  Aligned_cols=54  Identities=11%  Similarity=0.193  Sum_probs=37.9

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc---HhhhhhcCcccccEEEE
Q psy17502        157 DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH---QRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       157 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~---~~l~~~~~i~~~P~i~~  216 (461)
                      +..++.|..+||++|......+.+.      .+.+-.+|++.+   .++....|...+|.+++
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i   63 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI   63 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence            3456788999999999988877642      355666666544   34445567788999864

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=94.65  E-value=0.093  Score=45.04  Aligned_cols=42  Identities=12%  Similarity=0.152  Sum_probs=34.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT  197 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~  197 (461)
                      .+++++|.|+|+||+.|.+ .+.+.++.+.+++ .+.+..+.|+
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence            3589999999999999964 7899999999975 5777777663

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.63  E-value=0.092  Score=36.86  Aligned_cols=51  Identities=18%  Similarity=0.238  Sum_probs=35.2

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhh----hhhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI----AGEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l----~~~~~i~~~P~i~~  216 (461)
                      ++.|.++||++|......+.+..      +.+..+|...+.+.    .+..+...+|++++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~   56 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI   56 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            56788999999998888777643      56667777665443    33346667787644

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=94.62  E-value=0.099  Score=37.15  Aligned_cols=50  Identities=14%  Similarity=0.221  Sum_probs=36.5

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhc---CcccccEEEE
Q psy17502        161 VEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF---NIRGYPTIKF  216 (461)
Q Consensus       161 v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~---~i~~~P~i~~  216 (461)
                      ..|..++|+.|......+.+      ..+.|..+|++.+++..+.+   |..++|++++
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~   54 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA   54 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence            46778999999988877764      35677777877766555544   7777898766

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>KOG3171|consensus

Probab=94.60  E-value=0.2  Score=42.85  Aligned_cols=102  Identities=19%  Similarity=0.212  Sum_probs=76.3

Q ss_pred             CCceEcCc-cchhHHHhcCC---CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccE
Q psy17502         16 SDVIKLTT-SNFDDKVIKSD---EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPT   91 (461)
Q Consensus        16 ~~v~~l~~-~~f~~~~~~~~---~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   91 (461)
                      .-|+++++ +.|-+ .+...   -..+|..|-+.-.-|..+...+.-+|.++.- +.|.++-.+ +....++|...++|+
T Consensus       138 ~~V~El~~gkqfld-~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss-~~gas~~F~~n~lP~  214 (273)
T KOG3171|consen  138 GFVYELETGKQFLD-TIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSS-NTGASDRFSLNVLPT  214 (273)
T ss_pred             ceEEEeccchhHHH-HHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeec-cccchhhhcccCCce
Confidence            45777765 66777 55433   3688999999999999999999999988754 899988765 344578899999999


Q ss_pred             EEEEcCCCCCccc-------cCCcchhHHHHHHHHH
Q psy17502         92 VKIFSDKRNPTPY-------QGARTADAIIDVALEA  120 (461)
Q Consensus        92 l~~~~~g~~~~~y-------~g~~~~~~i~~~i~~~  120 (461)
                      |.+|++|..+..|       -...-+.++..|++.+
T Consensus       215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~  250 (273)
T KOG3171|consen  215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY  250 (273)
T ss_pred             EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence            9999998766443       2234455666666654

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.45  E-value=0.22  Score=43.49  Aligned_cols=77  Identities=17%  Similarity=0.308  Sum_probs=50.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEE-----------------------------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA-----------------------------------------  193 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~-----------------------------------------  193 (461)
                      +.+..++.|+.+.|++|+.+.+.+.+.    .+.+.+..                                         
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~  151 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA  151 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence            357889999999999999988877641    11111111                                         


Q ss_pred             ----EeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        194 ----VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       194 ----v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                          .+...+..+++++|+.+.|+++ +.+|     .  ...|..+.+.|.+|+
T Consensus       152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G-----~--~~~G~~~~~~l~~~L  197 (197)
T cd03020         152 ASCDNPVAANLALGRQLGVNGTPTIV-LADG-----R--VVPGAPPAAQLEALL  197 (197)
T ss_pred             cccCchHHHHHHHHHHcCCCcccEEE-ECCC-----e--EecCCCCHHHHHhhC
Confidence                1112234578899999999997 6655     1  256777777776653

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.31  E-value=0.075  Score=45.47  Aligned_cols=42  Identities=24%  Similarity=0.374  Sum_probs=36.1

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA   74 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~   74 (461)
                      ..++.++.|+.+.|++|+.+.+.+..+.+++.+++.+..+..
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~   55 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV   55 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence            567899999999999999999999999998877777765554

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=94.18  E-value=0.44  Score=37.69  Aligned_cols=72  Identities=15%  Similarity=0.287  Sum_probs=56.6

Q ss_pred             hhhhhhhh-hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccE-EEEE
Q psy17502        145 DSNFEKLV-YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT-IKFF  217 (461)
Q Consensus       145 ~~~~~~~~-~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~-i~~~  217 (461)
                      ....++.+ .+.++++++-|-.+|.+.|-.+-+.+.++|...+.-..++.+|.++-+++.+-|.+. -|. +.+|
T Consensus         8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF   81 (133)
T PF02966_consen    8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF   81 (133)
T ss_dssp             HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred             cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence            34444444 345788999999999999999999999999999988999999999988888889998 575 4444

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PRK10824 glutaredoxin-4; Provisional

Probab=94.02  E-value=0.17  Score=39.60  Aligned_cols=59  Identities=12%  Similarity=0.188  Sum_probs=37.7

Q ss_pred             HhcCCCeEEEEEEC---CCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhH----hhcCCCCccEEEE
Q psy17502         30 VIKSDEVWIVEYYA---PWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS----SSHGVTGFPTVKI   94 (461)
Q Consensus        30 ~~~~~~~~lv~f~~---~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~P~l~~   94 (461)
                      .+++++++++.=.+   |||++|++....|.+..      +.+..+|.++++++.    +.-|-+.+|.+++
T Consensus        11 ~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI   76 (115)
T PRK10824         11 QIAENPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV   76 (115)
T ss_pred             HHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence            56676644432222   69999999887776542      445556776665443    3346778999877

>KOG2640|consensus

Probab=94.00  E-value=0.021  Score=51.74  Aligned_cols=87  Identities=20%  Similarity=0.405  Sum_probs=70.5

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe-cCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchh
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN-ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTAD  111 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd-~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~  111 (461)
                      +..++-..||+.||+..+..+|++.-....+.. +....|+ ...-+.+..++++.+.|++.+... .-...|.|.++..
T Consensus        75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~-t~~~~~~~~r~l~  152 (319)
T KOG2640|consen   75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ-TCPASYRGERDLA  152 (319)
T ss_pred             cCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeecc-ccchhhcccccHH
Confidence            367899999999999999999999877766652 3333333 234577899999999999998865 5778999999999


Q ss_pred             HHHHHHHHHH
Q psy17502        112 AIIDVALEAI  121 (461)
Q Consensus       112 ~i~~~i~~~~  121 (461)
                      .|++|..+.+
T Consensus       153 sLv~fy~~i~  162 (319)
T KOG2640|consen  153 SLVNFYTEIT  162 (319)
T ss_pred             HHHHHHHhhc
Confidence            9999998875

>KOG1752|consensus

Probab=93.95  E-value=0.3  Score=37.40  Aligned_cols=62  Identities=24%  Similarity=0.338  Sum_probs=41.5

Q ss_pred             hhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-h----hHhhcCCCCccEEEE
Q psy17502         26 FDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-S----LSSSHGVTGFPTVKI   94 (461)
Q Consensus        26 f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-~----l~~~~~i~~~P~l~~   94 (461)
                      ..+ ++.+++  +|.|..+||++|..+..-|.+    +.....+..+|-..+. +    |.+.-+.+.+|.+++
T Consensus         7 v~~-~i~~~~--VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI   73 (104)
T KOG1752|consen    7 VRK-MISENP--VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI   73 (104)
T ss_pred             HHH-HhhcCC--EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence            344 566665  778999999999997777766    4444566666655432 3    333345678999887

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.85  E-value=0.22  Score=35.49  Aligned_cols=51  Identities=18%  Similarity=0.247  Sum_probs=34.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh----hcCcc-cccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG----EFNIR-GYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~----~~~i~-~~P~i~~  216 (461)
                      ++.|..++|++|......+.+.      .+.|..++++.+++..+    ..+.. ++|++++
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i   57 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI   57 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence            4678889999999888777652      46666777766544333    34655 7898754

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=93.80  E-value=0.15  Score=36.94  Aligned_cols=50  Identities=14%  Similarity=0.274  Sum_probs=34.2

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh----hcCcccccEEEE
Q psy17502        161 VEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG----EFNIRGYPTIKF  216 (461)
Q Consensus       161 v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~----~~~i~~~P~i~~  216 (461)
                      +.|..++|++|......+.+.      .+.+..+|++.++...+    ..|..++|+|++
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i   55 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI   55 (79)
T ss_pred             EEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence            567889999999988888752      35555666665544433    346677898754

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=93.62  E-value=0.3  Score=34.35  Aligned_cols=60  Identities=12%  Similarity=0.156  Sum_probs=50.8

Q ss_pred             eEEEEEECCCCHhHHhhHHHHHHHHHHc-CCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         36 VWIVEYYAPWCGHCQSFKDEYMKLATAL-KGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~-~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ..|-+|-+...+.+++....+.++.+++ .+.+.+=.||..+++++++.++|-.+|||+-.
T Consensus         2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~   62 (72)
T cd02978           2 YVLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV   62 (72)
T ss_pred             eEEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence            4567777888888998888888888766 56799999999999999999999999997643

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=93.47  E-value=0.25  Score=37.00  Aligned_cols=59  Identities=29%  Similarity=0.448  Sum_probs=43.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc--c------------------------------cHhhhhhcC
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT--V------------------------------HQRIAGEFN  207 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~--~------------------------------~~~l~~~~~  207 (461)
                      ++.|+.+.|++|..+.+.+.++.....+++.+......  .                              +..++.++|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            35789999999999999999987666666666554321  1                              123566789


Q ss_pred             cccccEEEEEc
Q psy17502        208 IRGYPTIKFFS  218 (461)
Q Consensus       208 i~~~P~i~~~~  218 (461)
                      +.+.|++++..
T Consensus        81 ~~g~Pt~v~~~   91 (98)
T cd02972          81 VTGTPTFVVNG   91 (98)
T ss_pred             CCCCCEEEECC
Confidence            99999998865

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=93.38  E-value=0.32  Score=34.59  Aligned_cols=51  Identities=10%  Similarity=0.201  Sum_probs=36.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh----hhhhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR----IAGEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~----l~~~~~i~~~P~i~~  216 (461)
                      ++.|..++|+.|+.....+++      ..+.+..+|+..++.    +.+..+-..+|++++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i   57 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF   57 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            567889999999988877775      246676777766543    444456667888754

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=93.26  E-value=0.74  Score=41.84  Aligned_cols=83  Identities=18%  Similarity=0.265  Sum_probs=54.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe----------------C----------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD----------------A----------------------  196 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~----------------~----------------------  196 (461)
                      +.+.+++.|+.+.|++|+++.+......+.  +.+.+..+-                |                      
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~  193 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP  193 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence            345678899999999999998776654332  122221110                0                      


Q ss_pred             ------------cccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        197 ------------TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       197 ------------~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                                  ..+..+..++|+++.|++++-...    .......|..+.+.|.+.+
T Consensus       194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~----G~~~~v~G~~~~~~L~~~l  248 (251)
T PRK11657        194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKD----GTLQQVVGLPDPAQLAEIM  248 (251)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC----CCEEEecCCCCHHHHHHHh
Confidence                        012236778999999999887643    2444567888888887766

>PHA03050 glutaredoxin; Provisional

Probab=93.20  E-value=0.44  Score=36.96  Aligned_cols=54  Identities=22%  Similarity=0.224  Sum_probs=34.4

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc---c----HhhhhhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV---H----QRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~---~----~~l~~~~~i~~~P~i~~  216 (461)
                      ++.|..+||++|......+.+..-.. .  .|..++++.   .    ..+.+.-|-.++|+|++
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~-~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI   75 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKR-G--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF   75 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCc-C--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence            67788999999998888777653211 1  233444433   2    23444557778899855

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=92.89  E-value=0.28  Score=37.40  Aligned_cols=51  Identities=12%  Similarity=0.094  Sum_probs=32.4

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh-------hhhhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR-------IAGEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~-------l~~~~~i~~~P~i~~  216 (461)
                      ++.|..+||++|......+.+.      .+.|..+|++.+++       +.+..|..++|.|++
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi   67 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV   67 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence            6678899999999888766653      24444555544322       223335678898743

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=92.86  E-value=0.45  Score=34.69  Aligned_cols=72  Identities=11%  Similarity=0.068  Sum_probs=48.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh---hcCcccccEEEEEcCCCCCCcCcccccCCCCH
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG---EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTS  236 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~---~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~  236 (461)
                      +..|..++|++|......+.+      ..+.|-.+|++.+++...   ..|...+|++++  ++     .   --+.++.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-----~---~~~Gf~~   66 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-----L---SWSGFRP   66 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-----E---EEecCCH
Confidence            567888999999988777754      357888888877665433   346667898865  22     1   1235677


Q ss_pred             HHHHHHHHhhc
Q psy17502        237 QDIVTWALNKY  247 (461)
Q Consensus       237 ~~i~~fi~~~~  247 (461)
                      +.|.+.+..+.
T Consensus        67 ~~l~~~~~~~~   77 (81)
T PRK10329         67 DMINRLHPAPH   77 (81)
T ss_pred             HHHHHHHHhhh
Confidence            88888776543

>PRK13190 putative peroxiredoxin; Provisional

Probab=92.65  E-value=0.92  Score=39.75  Aligned_cols=90  Identities=14%  Similarity=0.202  Sum_probs=56.0

Q ss_pred             CCeEEE-EEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC---------------------------cccHhhhhhc
Q psy17502        156 DDIWLV-EFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDA---------------------------TVHQRIAGEF  206 (461)
Q Consensus       156 ~~~~~v-~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~---------------------------~~~~~l~~~~  206 (461)
                      ++.+++ .|.+.||+.|....+.|.+.+..++. .+.+..+.+                           +.+..+++.|
T Consensus        27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y  106 (202)
T PRK13190         27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY  106 (202)
T ss_pred             CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence            344444 56789999999999999988887753 344433332                           2234567777


Q ss_pred             Ccc------cccEEEEEcCCCCCCcCcccc--cCCCCHHHHHHHHHhh
Q psy17502        207 NIR------GYPTIKFFSPGSRSASDAQEY--NGGRTSQDIVTWALNK  246 (461)
Q Consensus       207 ~i~------~~P~i~~~~~~~~~~~~~~~y--~g~~~~~~i~~fi~~~  246 (461)
                      |+.      ..|+.+++.+.++-. ....|  .+.++.+++.+.+...
T Consensus       107 gv~~~~~g~~~p~~fiId~~G~I~-~~~~~~~~~gr~~~ellr~l~~l  153 (202)
T PRK13190        107 NLIDENSGATVRGVFIIDPNQIVR-WMIYYPAETGRNIDEIIRITKAL  153 (202)
T ss_pred             CCccccCCcEEeEEEEECCCCEEE-EEEEeCCCCCCCHHHHHHHHHHh
Confidence            773      368888887653210 01112  3457888888877543

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=92.46  E-value=0.14  Score=44.17  Aligned_cols=32  Identities=13%  Similarity=0.130  Sum_probs=29.1

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|-|+|.|| +.||..|.+-.|.|.+++++|++
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~   63 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQK   63 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh
Confidence            578999999 99999999999999999999864

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=92.28  E-value=0.52  Score=33.35  Aligned_cols=51  Identities=10%  Similarity=0.193  Sum_probs=34.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH---hhhhhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ---RIAGEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~---~l~~~~~i~~~P~i~~  216 (461)
                      ++.|..++|+.|......+.+.      .+.+..+|++.+.   .+....|...+|.|++
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi   56 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI   56 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE
Confidence            5778899999999887777642      4556666665443   2333347778898743

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>KOG3170|consensus

Probab=92.03  E-value=2.5  Score=36.03  Aligned_cols=104  Identities=17%  Similarity=0.268  Sum_probs=70.2

Q ss_pred             CceeEcChhhhhhhhhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSD--DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      ..|..|+..++.+.+....  --|+|-.|...-+.|.-+...++.+|..| +.++|+.+-.++.   ...|--.+.|||+
T Consensus        91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki~at~c---IpNYPe~nlPTl~  166 (240)
T KOG3170|consen   91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKIPATTC---IPNYPESNLPTLL  166 (240)
T ss_pred             cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEecccccc---cCCCcccCCCeEE
Confidence            3588898888877775433  34667788888888999999999999999 4788888743321   2345556689999


Q ss_pred             EEcCCCCCCc--CcccccCC-CCHHHHHHHHHh
Q psy17502        216 FFSPGSRSAS--DAQEYNGG-RTSQDIVTWALN  245 (461)
Q Consensus       216 ~~~~~~~~~~--~~~~y~g~-~~~~~i~~fi~~  245 (461)
                      +|..|.-...  ....+-|. .+.+++..++-+
T Consensus       167 VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q  199 (240)
T KOG3170|consen  167 VYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ  199 (240)
T ss_pred             EeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence            9998742221  23334443 456666655544

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=91.91  E-value=0.48  Score=34.46  Aligned_cols=51  Identities=18%  Similarity=0.297  Sum_probs=34.2

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-----hhhhhc-CcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-----RIAGEF-NIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-----~l~~~~-~i~~~P~i~~  216 (461)
                      ++.|..++|++|......+.+      ..+.|..++.+.+.     +..++. |..++|.|++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            567788999999888777663      34555555544433     333444 6788999877

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=91.81  E-value=0.37  Score=47.24  Aligned_cols=51  Identities=12%  Similarity=0.252  Sum_probs=37.9

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh---hHhh---------cCCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS---LSSS---------HGVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~---l~~~---------~~i~~~P~l~~   94 (461)
                      ++.|+.+||++|++...-+.+.      .|.+-.+|+++++.   +.++         .|.+.+|++++
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence            6789999999999887666642      37788889887663   2222         36788999976

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=91.51  E-value=0.54  Score=47.87  Aligned_cols=78  Identities=17%  Similarity=0.236  Sum_probs=63.1

Q ss_pred             cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCchhhHhhcC--------CCCc
Q psy17502         21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEEKSLSSSHG--------VTGF   89 (461)
Q Consensus        21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~~~l~~~~~--------i~~~   89 (461)
                      =.++.|.+ .-++++|+|+-....||.=|.-|..+=   .++|..++..+.-++||-++-|++-+.|.        --|.
T Consensus        31 W~~eAf~~-A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGW  109 (667)
T COG1331          31 WGEEAFAK-AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGW  109 (667)
T ss_pred             cCHHHHHH-HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCC
Confidence            36788888 888999999999999999999987654   78888888889999999999998777663        5579


Q ss_pred             cEEEEE-cCCC
Q psy17502         90 PTVKIF-SDKR   99 (461)
Q Consensus        90 P~l~~~-~~g~   99 (461)
                      |--++. .+|+
T Consensus       110 PLtVfLTPd~k  120 (667)
T COG1331         110 PLTVFLTPDGK  120 (667)
T ss_pred             ceeEEECCCCc
Confidence            954444 4553

>KOG2640|consensus

Probab=91.37  E-value=0.11  Score=47.26  Aligned_cols=87  Identities=17%  Similarity=0.378  Sum_probs=67.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe-CcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD-ATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG  233 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~-~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~  233 (461)
                      ....+-..||+.||+..+...+.|+-....+.. +....++ ......+..++++.+.|++.+....     -...|-|.
T Consensus        75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t-----~~~~~~~~  148 (319)
T KOG2640|consen   75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT-----CPASYRGE  148 (319)
T ss_pred             cCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeeccc-----cchhhccc
Confidence            456788999999999988889988888777752 2222232 1124567789999999999999876     67889999


Q ss_pred             CCHHHHHHHHHhhc
Q psy17502        234 RTSQDIVTWALNKY  247 (461)
Q Consensus       234 ~~~~~i~~fi~~~~  247 (461)
                      .+..+|++|-.+.+
T Consensus       149 r~l~sLv~fy~~i~  162 (319)
T KOG2640|consen  149 RDLASLVNFYTEIT  162 (319)
T ss_pred             ccHHHHHHHHHhhc
Confidence            99999999987754

>PRK15000 peroxidase; Provisional

Probab=91.22  E-value=0.24  Score=43.29  Aligned_cols=33  Identities=9%  Similarity=0.093  Sum_probs=29.4

Q ss_pred             CCccEEEEEecC-cchhhhhchhHHHHHHHHHhh
Q psy17502        427 SDEVWIVEYYAP-WCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       427 ~~kdvlv~fyap-wC~~Ck~l~p~~~~la~~~k~  459 (461)
                      .+|-|+|.||+. ||..|.+-.|.+.++++.|++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~   66 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK   66 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence            468899999995 999999999999999999864

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=91.21  E-value=1.2  Score=33.84  Aligned_cols=45  Identities=18%  Similarity=0.210  Sum_probs=30.5

Q ss_pred             CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhh----hhhcCcccccEEEE
Q psy17502        166 PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI----AGEFNIRGYPTIKF  216 (461)
Q Consensus       166 ~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l----~~~~~i~~~P~i~~  216 (461)
                      +||++|......+.+.      .+.|..+|...+.++    .+.-|..++|.|++
T Consensus        25 ~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi   73 (97)
T TIGR00365        25 PQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV   73 (97)
T ss_pred             CCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence            8999999888877663      355666776555443    33345667888755

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=90.92  E-value=0.32  Score=42.88  Aligned_cols=41  Identities=22%  Similarity=0.519  Sum_probs=33.8

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEec
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNA   74 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~   74 (461)
                      +++-+|.|++..|+||+.+.+.+   ..+.+.+.+++.+..+..
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~   80 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV   80 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence            45779999999999999999876   788888877777766654

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=90.67  E-value=1.9  Score=37.80  Aligned_cols=39  Identities=23%  Similarity=0.201  Sum_probs=29.6

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC
Q psy17502        158 IWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDA  196 (461)
Q Consensus       158 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~  196 (461)
                      ++++.|.+.||+.|....+.+.+++..++. .+.+..+.+
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~   67 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSV   67 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence            445567789999999999999999988863 455555543

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK10638 glutaredoxin 3; Provisional

Probab=89.99  E-value=1  Score=32.88  Aligned_cols=51  Identities=10%  Similarity=0.142  Sum_probs=34.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh----hhhhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR----IAGEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~----l~~~~~i~~~P~i~~  216 (461)
                      ++.|..++|++|......+.+.      .+.+..+|++.+.+    +.+..+...+|+|++
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~   58 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI   58 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence            5677789999999888777752      45666677765543    334446667898754

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=89.69  E-value=1.7  Score=31.82  Aligned_cols=75  Identities=11%  Similarity=0.094  Sum_probs=59.5

Q ss_pred             CeEEEEEECCCCHhHHhhHHHHHHHHHH-cCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcch
Q psy17502         35 EVWIVEYYAPWCGHCQSFKDEYMKLATA-LKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTA  110 (461)
Q Consensus        35 ~~~lv~f~~~~c~~C~~~~~~~~~~a~~-~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~  110 (461)
                      .++|=.|.+..-+.+++....+.++.++ +.+.+.+=.||..++|++++.++|-.+|||+=-.. ....+.-|..+.
T Consensus         3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P-~P~rriiGdls~   78 (87)
T TIGR02654         3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILP-PPVRKIIGDLSD   78 (87)
T ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCC-CCcceeeccccc
Confidence            4677788888999999988888888764 45678888999999999999999999999765443 345566776653

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>PRK09301 circadian clock protein KaiB; Provisional

Probab=88.53  E-value=2.2  Score=32.32  Aligned_cols=76  Identities=12%  Similarity=0.104  Sum_probs=61.5

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHH-cCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcch
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATA-LKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTA  110 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~-~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~  110 (461)
                      ..++|=+|.+..-+.+++....+.++-+. +.+.+.+=.||..++|++++.++|-.+|||+=-.. ....+.-|..+.
T Consensus         5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P-~P~rriiGDlsd   81 (103)
T PRK09301          5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILP-PPVRKIIGDLSD   81 (103)
T ss_pred             ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCC-CCcceeeccccc
Confidence            45788888899999999988888888764 45678888999999999999999999999765443 355667787654

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=88.45  E-value=6.3  Score=29.61  Aligned_cols=74  Identities=15%  Similarity=0.193  Sum_probs=51.4

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC-CccccCCcchh
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN-PTPYQGARTAD  111 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~-~~~y~g~~~~~  111 (461)
                      .+++.++.|..+. ..|..+..-++++|. +.++|.+-..+...           ..|++.+..+|+. -.+|.|.-...
T Consensus        18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~-lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh   84 (94)
T cd02974          18 ENPVELVASLDDS-EKSAELLELLEEIAS-LSDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH   84 (94)
T ss_pred             CCCEEEEEEeCCC-cchHHHHHHHHHHHH-hCCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence            4556777887765 888887777777775 34556664433221           4799999876532 37899999998


Q ss_pred             HHHHHHHH
Q psy17502        112 AIIDVALE  119 (461)
Q Consensus       112 ~i~~~i~~  119 (461)
                      ++..++..
T Consensus        85 Ef~Slila   92 (94)
T cd02974          85 EFTSLVLA   92 (94)
T ss_pred             hHHHHHHH
Confidence            98888764

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=88.33  E-value=0.55  Score=41.06  Aligned_cols=32  Identities=6%  Similarity=0.135  Sum_probs=27.4

Q ss_pred             CccEEEEEec-CcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYYA-PWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fya-pwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|-++|.||+ .||.+|..-.+.+.+++++|++
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~   68 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE   68 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH
Confidence            6789999995 8899999888899999888864

>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=88.25  E-value=5  Score=29.87  Aligned_cols=72  Identities=17%  Similarity=0.224  Sum_probs=44.4

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG  233 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~  233 (461)
                      +.++..+|+||...   .......|+++|..+++...|...-.+    +.....-.+ +.+++|++.+.  .....|.|.
T Consensus        14 d~~kr~iIgYF~~~---~~~eY~~f~kvA~~lr~dC~F~v~~G~----~~~~~~~~~-~~~i~frp~~~--~~~~~y~G~   83 (91)
T cd03070          14 DRSKRNIIGYFESK---DSDEYDNFRKVANILRDDCSFLVGFGD----VTKPERPPG-DNIIYFPPGHN--APDMVYLGS   83 (91)
T ss_pred             CcCCceEEEEEcCC---CChhHHHHHHHHHHHhhcCeEEEEecc----ccccccCCC-CCeEEECCCCC--CCceEEccC
Confidence            56677888888664   356788999999999987666442111    111222233 34566665422  345789998


Q ss_pred             CC
Q psy17502        234 RT  235 (461)
Q Consensus       234 ~~  235 (461)
                      .+
T Consensus        84 ~t   85 (91)
T cd03070          84 LT   85 (91)
T ss_pred             CC
Confidence            63

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=88.22  E-value=0.37  Score=42.42  Aligned_cols=29  Identities=28%  Similarity=0.745  Sum_probs=24.1

Q ss_pred             ccEEEEEecCcchhhhhchhHH---HHHHHHH
Q psy17502        429 EVWIVEYYAPWCGHCQSFKDEY---MKLATAL  457 (461)
Q Consensus       429 kdvlv~fyapwC~~Ck~l~p~~---~~la~~~  457 (461)
                      +..+|+|+..-|+||.+++|.+   ..+-+.+
T Consensus        38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~   69 (207)
T PRK10954         38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKL   69 (207)
T ss_pred             CCeEEEEeCCCCccHHHhcccccchHHHHHhC
Confidence            4569999999999999999876   6666654

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=88.15  E-value=1.8  Score=32.26  Aligned_cols=45  Identities=18%  Similarity=0.378  Sum_probs=30.3

Q ss_pred             CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhh----hhhcCcccccEEEE
Q psy17502        166 PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI----AGEFNIRGYPTIKF  216 (461)
Q Consensus       166 ~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l----~~~~~i~~~P~i~~  216 (461)
                      +||++|......+.+.      .+.|..+|...+.++    .+..|-.++|.|++
T Consensus        21 ~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi   69 (90)
T cd03028          21 PRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV   69 (90)
T ss_pred             CCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence            6999998888777663      256666666555443    33446677898744

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK13191 putative peroxiredoxin; Provisional

Probab=88.06  E-value=0.59  Score=41.37  Aligned_cols=32  Identities=9%  Similarity=0.111  Sum_probs=26.5

Q ss_pred             CccEEE-EEecCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIV-EYYAPWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv-~fyapwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|-|+| .|-+.||..|..-.|.+.++++.|+.
T Consensus        33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~   65 (215)
T PRK13191         33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK   65 (215)
T ss_pred             CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH
Confidence            565666 55599999999999999999999863

>PRK10824 glutaredoxin-4; Provisional

Probab=87.42  E-value=1.4  Score=34.48  Aligned_cols=45  Identities=18%  Similarity=0.268  Sum_probs=28.2

Q ss_pred             CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh----hcCcccccEEEE
Q psy17502        166 PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG----EFNIRGYPTIKF  216 (461)
Q Consensus       166 ~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~----~~~i~~~P~i~~  216 (461)
                      |+|++|......+.+..      +.+..+|...+.++..    .-|-..+|.|++
T Consensus        28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI   76 (115)
T PRK10824         28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV   76 (115)
T ss_pred             CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence            59999999888877753      3444455544444333    335567787665

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=87.33  E-value=0.69  Score=42.07  Aligned_cols=32  Identities=13%  Similarity=0.158  Sum_probs=28.5

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|-|+|.|| +-||..|.+-.|.|.++.+.|++
T Consensus        98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~  130 (261)
T PTZ00137         98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE  130 (261)
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence            567888899 89999999999999999999864

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=86.84  E-value=1.6  Score=35.95  Aligned_cols=38  Identities=39%  Similarity=0.615  Sum_probs=29.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEE
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA  193 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~  193 (461)
                      +.++.++.|+.++|++|..+.+.+.++...+ +++.+..
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~   41 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVF   41 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEE
Confidence            3567889999999999999999998877665 4444443

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK13189 peroxiredoxin; Provisional

Probab=86.81  E-value=0.76  Score=40.91  Aligned_cols=33  Identities=9%  Similarity=0.094  Sum_probs=27.1

Q ss_pred             CCccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        427 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       427 ~~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      .+|-|+|+|| +.||..|.+-.+.+.++++.|++
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~   67 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE   67 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            3566666555 99999999999999999999864

>KOG3171|consensus

Probab=86.67  E-value=5.2  Score=34.52  Aligned_cols=106  Identities=16%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             ceeEc-ChhhhhhhhhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        139 AVVEL-TDSNFEKLVYNS--DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       139 ~v~~l-~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      -|.++ +.++|.+.+...  ....+|..|.+.-..|..+.....=+|..+ +.++|.++..+ +....++|.....|++.
T Consensus       139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss-~~gas~~F~~n~lP~Ll  216 (273)
T KOG3171|consen  139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSS-NTGASDRFSLNVLPTLL  216 (273)
T ss_pred             eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeec-cccchhhhcccCCceEE
Confidence            36777 457777766333  235678889988888988888888888888 57999888543 33456788888999999


Q ss_pred             EEcCCCCCCcCccc----ccCCCCHHHHHHHHHhhc
Q psy17502        216 FFSPGSRSASDAQE----YNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       216 ~~~~~~~~~~~~~~----y~g~~~~~~i~~fi~~~~  247 (461)
                      +|+.|.- ..+...    +-.++...++..|+....
T Consensus       217 iYkgGeL-IgNFv~va~qlgedffa~dle~FL~e~g  251 (273)
T KOG3171|consen  217 IYKGGEL-IGNFVSVAEQLGEDFFAGDLESFLNEYG  251 (273)
T ss_pred             EeeCCch-hHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence            9998821 001111    122355556666665543

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=86.27  E-value=1.5  Score=38.80  Aligned_cols=64  Identities=17%  Similarity=0.210  Sum_probs=53.0

Q ss_pred             CCCCCCceEcCccc---hhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC
Q psy17502         12 YPSYSDVIKLTTSN---FDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE   76 (461)
Q Consensus        12 ~~~~~~v~~l~~~~---f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~   76 (461)
                      ...++.|+.++.++   +-+ +.+.++|.++.|.+-.|++-..-.++|.++++++.+.+.|..|-+.+
T Consensus        78 ~APns~vv~l~g~~~~~ild-f~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~E  144 (237)
T PF00837_consen   78 PAPNSPVVTLDGQRSCRILD-FAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEE  144 (237)
T ss_pred             CCCCCceEeeCCCcceeHHH-hccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhh
Confidence            34567899998877   444 56789999999999999999999999999999998877777776553

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=85.90  E-value=2.4  Score=35.29  Aligned_cols=42  Identities=31%  Similarity=0.457  Sum_probs=34.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHh--cCceEEEEEeC
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASEL--EGKVKLGAVDA  196 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~--~~~i~f~~v~~  196 (461)
                      +.++.++.|+...|++|..+.+.+.++.+.+  .+.+.|.....
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~   54 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV   54 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence            3467899999999999999999999988888  67788877654

...

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=85.87  E-value=1.4  Score=37.40  Aligned_cols=40  Identities=38%  Similarity=0.555  Sum_probs=33.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEE
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV  194 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v  194 (461)
                      +.++.++.|+...|++|..+.+....+.+.+.+.+.+..+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~   53 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV   53 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence            4678899999999999999999999998888766666543

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria

Probab=84.60  E-value=0.84  Score=33.19  Aligned_cols=55  Identities=16%  Similarity=0.220  Sum_probs=45.6

Q ss_pred             EEECCCCHhHHhhHHHHHHHHHH-cCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         40 EYYAPWCGHCQSFKDEYMKLATA-LKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        40 ~f~~~~c~~C~~~~~~~~~~a~~-~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      +|-+..-..++++...+..+.+. +.+.+.+-.||..++|++++.++|-.+|||+-
T Consensus         2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik   57 (82)
T PF07689_consen    2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK   57 (82)
T ss_dssp             EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred             eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence            35566667778888888888876 45679999999999999999999999999764

Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=84.48  E-value=9.1  Score=32.89  Aligned_cols=36  Identities=14%  Similarity=0.188  Sum_probs=27.9

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEe
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVN   73 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd   73 (461)
                      +.+|+..-|+.|-...+.+.++.+.+.+ +|.+.-+.
T Consensus         2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~   38 (193)
T PF01323_consen    2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP   38 (193)
T ss_dssp             EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence            6788999999999999999999988833 34444443

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>PRK13599 putative peroxiredoxin; Provisional

Probab=83.37  E-value=1.1  Score=39.59  Aligned_cols=32  Identities=16%  Similarity=0.197  Sum_probs=26.7

Q ss_pred             CccE-EEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVW-IVEYYAPWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdv-lv~fyapwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|-| |+.|-|.||+.|..-.|.|.+++++|++
T Consensus        28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~   60 (215)
T PRK13599         28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKE   60 (215)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH
Confidence            4554 5666799999999999999999999864

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=83.19  E-value=3.3  Score=34.45  Aligned_cols=56  Identities=18%  Similarity=0.233  Sum_probs=39.9

Q ss_pred             CeEEEEEE-CCCCHhHHhh-HHHHHHHHHHcCC-ce-EEEEEecCCc---hhhHhhcCC-CCcc
Q psy17502         35 EVWIVEYY-APWCGHCQSF-KDEYMKLATALKG-VV-KVGAVNADEE---KSLSSSHGV-TGFP   90 (461)
Q Consensus        35 ~~~lv~f~-~~~c~~C~~~-~~~~~~~a~~~~~-~v-~~~~vd~~~~---~~l~~~~~i-~~~P   90 (461)
                      +.+++.|| +.||+.|..- .+.|.+.+.++.. .+ .+..|.++..   .+.++++++ ..+|
T Consensus        30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~   93 (155)
T cd03013          30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR   93 (155)
T ss_pred             CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence            44555555 7799999998 9999999999864 35 4777777643   456777777 2454

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=82.68  E-value=4.6  Score=33.20  Aligned_cols=51  Identities=18%  Similarity=0.298  Sum_probs=35.8

Q ss_pred             EEEEECC------CCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCC----CCccEEEE
Q psy17502         38 IVEYYAP------WCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGV----TGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~------~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i----~~~P~l~~   94 (461)
                      +|.|+++      +|++|+++...|+..      .|.+-.+|.+.+++    |.+..+-    ..+|.|++
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI   66 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV   66 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence            4556666      899999888776643      37788899877654    4444454    67888876

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=82.20  E-value=10  Score=34.26  Aligned_cols=37  Identities=27%  Similarity=0.332  Sum_probs=27.3

Q ss_pred             hhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         79 SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        79 ~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      .+++++||.++|++++-..     .+.|..+.+++.+.+...
T Consensus       206 ~~a~~~gv~gTPt~~v~~~-----~~~g~~~~~~l~~~i~~~  242 (244)
T COG1651         206 KLAQQLGVNGTPTFIVNGK-----LVPGLPDLDELKAIIDEA  242 (244)
T ss_pred             HHHHhcCCCcCCeEEECCe-----eecCCCCHHHHHHHHHHh
Confidence            3667789999999888432     678888877777766543

>KOG1752|consensus

Probab=81.55  E-value=5.7  Score=30.43  Aligned_cols=54  Identities=19%  Similarity=0.178  Sum_probs=35.0

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-hh----hhhcCcccccEEEE
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-RI----AGEFNIRGYPTIKF  216 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-~l----~~~~~i~~~P~i~~  216 (461)
                      .+|.|..+||+.|..+...|..    +.....+..+|-..+. ++    .+--+-+++|.+++
T Consensus        15 ~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI   73 (104)
T KOG1752|consen   15 PVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI   73 (104)
T ss_pred             CEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence            3567889999999988777777    5445666777654322 22    22223456788766

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain

Probab=80.91  E-value=16  Score=29.56  Aligned_cols=91  Identities=12%  Similarity=0.089  Sum_probs=61.6

Q ss_pred             hcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCch------------------hhHhhcCCCCc
Q psy17502         31 IKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEEK------------------SLSSSHGVTGF   89 (461)
Q Consensus        31 ~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~~------------------~l~~~~~i~~~   89 (461)
                      -++.++.+|+.++|.-..+..|-...   +.+.+-+++++.+-.-|.+...                  ..++.++...+
T Consensus        18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f   97 (136)
T cd02990          18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL   97 (136)
T ss_pred             hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence            34568999999999875544443333   4444445566666666765432                  24566789999


Q ss_pred             cEEEEEcCC----CCCccccCCcchhHHHHHHHHHH
Q psy17502         90 PTVKIFSDK----RNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        90 P~l~~~~~g----~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |.+.+....    ..+.+..|..+++++++-+...+
T Consensus        98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v  133 (136)
T cd02990          98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM  133 (136)
T ss_pred             CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence            998887521    23466799999999999887764

FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=80.74  E-value=5.3  Score=33.15  Aligned_cols=58  Identities=19%  Similarity=0.397  Sum_probs=42.2

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC---chhhHhhcCCCCccE
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE---EKSLSSSHGVTGFPT   91 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~---~~~l~~~~~i~~~P~   91 (461)
                      .++.++++|| ..+++-|-.-.-.|++...+++. ...+..|..+.   .+.+++++++. +|-
T Consensus        29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~-f~L   91 (157)
T COG1225          29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT-FPL   91 (157)
T ss_pred             cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-cee
Confidence            4458888898 55888898888888888888865 46666677664   45677777766 443

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=80.52  E-value=8  Score=26.97  Aligned_cols=52  Identities=10%  Similarity=0.109  Sum_probs=33.7

Q ss_pred             EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC-chhhHhhcCCCCccEEEE
Q psy17502         39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE-EKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~P~l~~   94 (461)
                      ++|+.+||+.|++.+-.+.+.    +-.+.+..||... .+++.+......+|+|..
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~----gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~   54 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLA----GITVELREVELKNKPAEMLAASPKGTVPVLVL   54 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHc----CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence            467889999999876444322    2135666666543 345656666778999864

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	461
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		5e-36
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		3e-20
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		2e-06
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		5e-35
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		6e-26
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		4e-10
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		2e-34
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		2e-07
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		3e-23
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-22
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		5e-20
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		1e-04
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		5e-19
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		2e-04
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		2e-18
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		8e-06
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		1e-17
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		1e-06
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		3e-16
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		1e-15
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		4e-05
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		3e-16
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		8e-04
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		4e-15
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		1e-04
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		4e-14
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		4e-14
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		4e-14
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		2e-13
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		5e-12
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		4e-13
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		1e-11
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		6e-06
2djj_A	121	Solution Structure Of The A' Domain Of Thermophilic		2e-12
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		1e-11
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		4e-11
1x5e_A	126	The Solution Structure Of The Thioredoxin-Like Doma		4e-11
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		2e-10
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		2e-10
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		2e-10
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		2e-10
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		3e-10
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		4e-10
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		4e-10
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		4e-10
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		5e-10
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		5e-10
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		5e-10
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		5e-10
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		5e-10
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		5e-10
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		6e-10
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		7e-10
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		8e-10
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		8e-10
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		8e-10
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		1e-09
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		1e-09
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		1e-09
3t58_A	519	C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTER		2e-09
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		2e-09
3vfi_A	104	Crystal Structure Of A Metagenomic Thioredoxin Leng		2e-09
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		3e-09
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		3e-09
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		3e-09
3q6o_A	244	Oxidoreductase Fragment Of Human Qsox1 Length = 244		4e-09
1tho_A	109	Crystal Structure Of A Mutant Escherichia Coli Thio		6e-09
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		7e-09
1f6m_C	108	Crystal Structure Of A Complex Between Thioredoxin		7e-09
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		7e-09
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		8e-09
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		2e-08
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		2e-08
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		2e-08
1zcp_A	108	Crystal Structure Of A Catalytic Site Mutant E. Col		3e-08
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		4e-08
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		6e-08
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		6e-08
3tco_A	109	Crystallographic And Spectroscopic Characterization		7e-08
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		2e-07
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		4e-07
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		3e-07
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		3e-07
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		3e-07
1oaz_A	123	Ige Fv Spe7 Complexed With A Recombinant Thioredoxi		3e-07
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		5e-07
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		6e-07
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		7e-07
2o7k_A	107	S. Aureus Thioredoxin Length = 107		8e-07
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		9e-07
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		9e-07
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		2e-06
3hz4_A	140	Crystal Structure Of Thioredoxin From Methanosarcin		2e-06
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		2e-06
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		3e-06
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		3e-06
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		3e-06
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		3e-06
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		3e-06
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		4e-06
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		4e-06
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		7e-06
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		7e-06
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		8e-06
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		8e-06
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		9e-06
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		1e-05
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		1e-05
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		2e-05
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		3e-05
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		4e-05
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		5e-05
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		5e-05
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		6e-05
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		6e-05
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		7e-05
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		7e-05
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		8e-05
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		9e-05
2oe0_A	114	Crystal Structure Of Mitochondrial Thioredoxin 3 Fr		1e-04
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		4e-04
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		5e-04
1thx_A	115	Thioredoxin-2 Length = 115		5e-04
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		9e-04
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		9e-04

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 89/235 (37%), Positives = 124/235 (52%), Gaps = 22/235 (9%)
Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNA 74
           V+ L  +NFD+ V   D V ++E+YAPWCGHC+ F  EY K+A  LK     + V  ++A
Sbjct: 17  VLVLNDANFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDA 75
Query: 75  DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQXXXXXXXXXXX 134
                L+S   V+G+PT+KI   K     Y+G+RT + I+    E  +            
Sbjct: 76  TSASVLASRFDVSGYPTIKILK-KGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLV 134
Query: 135 XXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKL 191
                   LT  NF+++V N  DI LVEF+APWCGHCK L P +EKAA EL  +   + L
Sbjct: 135 --------LTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPL 185
Query: 192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
             VDAT    +A  F++ GYPT+K F  G        +YNG R    IV + + +
Sbjct: 186 AKVDATAETDLAKRFDVSGYPTLKIFRKGR-----PYDYNGPREKYGIVDYMIEQ 235

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 24/224 (10%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKLGAVDATVH 199
           L D+NF+  V + D + L+EF+APWCGHCK   P +EK A+ L+ K   + +  +DAT  
Sbjct: 20  LNDANFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSA 78
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTEN-VPPPEIKQ 258
             +A  F++ GYPTIK    G      A +Y G RT ++IV         +  PPPE+  
Sbjct: 79  SVLASRFDVSGYPTIKILKKGQ-----AVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTL 133
Query: 259 IVSEATFKEACEDHPLCIVAVL-PHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEA 317
           ++++  F E   D  + +V    P    C+      Y +  ++L  +        +  +A
Sbjct: 134 VLTKENFDEVVNDADIILVEFYAPWCGHCK-KLAPEYEKAAKELSKRSPPIPLAKV--DA 190
Query: 318 VAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINE 361
            A+ DL    ++   GYP + +    +        P+ Y+G  E
Sbjct: 191 TAETDLAKRFDVS--GYPTLKIFRKGR--------PYDYNGPRE 224

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 395 GELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
           G L  E+D+++ + +   L  ++ NFD+ V   D V ++E+YAPWCGHC+ F  EY K+A
Sbjct: 1   GPLGSEDDLEVKEENGV-LVLNDANFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIA 58
Query: 455 TALK 458
             LK
Sbjct: 59  NILK 62

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Query: 11  LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG 70
           LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K ATALK VVKVG
Sbjct: 12  LYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVG 71
Query: 71  AVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIR 122
           AVNAD+ +SL   +GV GFPT+KIF ++K  P  YQG RT +AI+D AL A+R
Sbjct: 72  AVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALR 124

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 70/104 (67%), Gaps = 3/104 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           ELT SNF + V  SD +WLVEF+APWCGHC+ L P W+KAA+ L+  VK+GAV+A  HQ 
Sbjct: 21  ELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQS 80
Query: 202 IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245
           + G++ ++G+PTIK F        D   Y GGRT + IV  AL+
Sbjct: 81  LGGQYGVQGFPTIKIFGANKNKPED---YQGGRTGEAIVDAALS 121

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           NF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K ATALK
Sbjct: 26  NFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK 65

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 88/119 (73%), Gaps = 8/119 (6%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL----EGKVKLGAVDAT 197
           ELTD +F+K V +S+D+W+VEF+APWCGHCKNLEP W  AASE+    +GKVKL AVDAT
Sbjct: 11  ELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDAT 70
Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEI 256
           V+Q +A  + IRG+PTIK F  G        +Y+GGRT  DIV+ AL+ +++N PPPE+
Sbjct: 71  VNQVLASRYGIRGFPTIKIFQKGESPV----DYDGGRTRSDIVSRALDLFSDNAPPPEL 125

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 31/40 (77%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           +FD  V+ S++VW+VE+YAPWCGHC++ + E+   A+ +K
Sbjct: 16  SFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVK 55

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 190/466 (40%), Gaps = 91/466 (19%)
Query: 16  SDVIKLTTSNFDDKV--IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
           SDV++LT  NF+ ++    S  + +VE++APWCGH +    EY   AT LKG+V +  V+
Sbjct: 1   SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVD 60
Query: 74  ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQXXXXXXXXXX 133
                +  + +GV+G+PT+KIF D      Y G RTAD I+                   
Sbjct: 61  CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIV--------------SHLKK 106
Query: 134 XXXXXXXXELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWE--KAASELEGKVKL 191
                     T+  F+K + +  D  +V FF          E H E  KAAS L    + 
Sbjct: 107 QAGPASVPLRTEEEFKKFISDK-DASIVGFFDDSFS-----EAHSEFLKAASNLRDNYRF 160
Query: 192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENV 251
              +    + +  E++  G   I  F P   +          +     V +   K T   
Sbjct: 161 AHTNV---ESLVNEYDDNGEGII-LFRPSHLT---------NKFEDKTVAYTEQKMTSG- 206
Query: 252 PPPEIKQIVSEATF---KEACEDHPLCI----VAVLPHILDCQSSC------RNNYLEIL 298
              +IK+ + E  F       ED+   I    + +  + +D + +       RN  + + 
Sbjct: 207 ---KIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVA 263
Query: 299 QKLGDKYKQKVWGWIWSEAVAQPDLENV-LEIGGFGYPAMAVLNAKKMKYSLLKGPFSYD 357
           +K  D    K+   + S      +L +  LE      P +A+  AK  K+ + +      
Sbjct: 264 KKFLDA-GHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQE------ 316
Query: 358 GINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDG------KDGELPQEEDIDLSDVDLE 411
              EF RD            G AL +  Q D +DG      K   +P+  D  +  V  E
Sbjct: 317 ---EFSRD------------GKALERFLQ-DYFDGNLKRYLKSEPIPESNDGPVKVVVAE 360
Query: 412 DLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
                  NFD+ V   ++  ++E+YAPWCGHC++ + +Y +L   L
Sbjct: 361 -------NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKL 399

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 22/232 (9%)
Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
           S V  L   NF        E W+V+++APW    ++   E  K +T L G +KVG ++  
Sbjct: 440 SHVTTLGPQNFP---ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCT 496
Query: 76  EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQXXXXXXXXXXXX 135
             + L + + +  +PT  +F ++ +   Y+G  +A+ I++  +E +R             
Sbjct: 497 IHEGLCNMYNIQAYPTTVVF-NQSSIHEYEGHHSAEQILEF-IEDLRNPSVV-------- 546
Query: 136 XXXXXXELTDSNFEKLV--YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193
                  LT S F +LV     D++W+V+F++PW    + L P W++ A  L G + +G+
Sbjct: 547 ------SLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGS 600
Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG-GRTSQDIVTWAL 244
           VD   +     + N++ YP I+F+   S  A     YNG  R +  + +W L
Sbjct: 601 VDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGL 652

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Query: 142 ELTDSNFEKLVYN--SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
           ELTD NFE  + +  S  + LVEFFAPWCGHCK L P +E AA+ L+G V L  VD T +
Sbjct: 5   ELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTAN 64
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVT 241
                ++ + GYPT+K F    R   +A  Y+G RT+  IV+
Sbjct: 65  TNTCNKYGVSGYPTLKIF----RDGEEAGAYDGPRTADGIVS 102

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 409 DLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           D+ +L  D F        S  + +VE++APWCGHC+    EY   AT LK
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLK 51

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 67/109 (61%), Gaps = 7/109 (6%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVH 199
           L  SNF + +  +    LVEF+APWCGHCK L P + KAA +L+    +++L  VDAT  
Sbjct: 12  LRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE 70
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYT 248
             +A ++ +RGYPTIKFF  G  ++   +EY  GR + DIV W L K T
Sbjct: 71  SDLAQQYGVRGYPTIKFFRNGDTASP--KEYTAGREADDIVNW-LKKRT 116

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 398 PQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
           P+EED  L       L K  F    + + + +  +VE+YAPWCGHC++   EY K A  L
Sbjct: 3   PEEEDHVLV------LRKSNFA---EALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKL 53
Query: 458 KV 459
           K 
Sbjct: 54  KA 55

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKLGAVDATVH 199
           LT  NF+ +V N+D I LVEF+APWCGHCK L P +EKAA EL  +   + L  VDAT  
Sbjct: 12  LTKDNFDDVVNNAD-IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQ 70
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
             +A  F++ GYPT+K F  G        +YNG R    IV + + +
Sbjct: 71  TDLAKRFDVSGYPTLKIFRKGR-----PFDYNGPREKYGIVDYMIEQ 112

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
           NFDD V+ + ++ +VE+YAPWCGHC+    EY K A  L
Sbjct: 16  NFDD-VVNNADIILVEFYAPWCGHCKKLAPEYEKAAKEL 53

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 10/118 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKLGAVDATVH 199
           L D NF+  V + D + L+EF+APWCGHCK   P +EK AS L+     + +  +DAT  
Sbjct: 22  LNDGNFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA 80
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTEN-VPPPEI 256
             +A +F++ GYPTIK    G      A +Y+G RT ++IV         +  PPPE+
Sbjct: 81  SMLASKFDVSGYPTIKILKKGQ-----AVDYDGSRTQEEIVAKVREVSQPDWTPPPEV 133

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           NFD+ V   D V ++E+YAPWCGHC+ F  EY K+A+ LK
Sbjct: 26  NFDNFVADKDTV-LLEFYAPWCGHCKQFAPEYEKIASTLK 64

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 69/110 (62%), Gaps = 4/110 (3%)
Query: 13  PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA-TALKGVVKVGA 71
           P  S V+KL T +F++  I+S ++ + E++APWCGHC++   EY+K A T ++  + +  
Sbjct: 11  PEDSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQ 69
Query: 72  VNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIIDVALE 119
           ++  E + L   H + GFP++KIF  SD  N   Y+G RTA+AI+   ++
Sbjct: 70  IDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIK 119

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASEL-EGKVKLGAVDATVHQRIAGEFNIRGYPT 213
           S D+ L EFFAPWCGHCKN+ P + KAA  L E  + L  +D T +Q +  E NI G+P+
Sbjct: 30  SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPS 89
Query: 214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
           +K F   +   +++ +Y G RT++ IV + + +
Sbjct: 90  LKIFK--NSDVNNSIDYEGPRTAEAIVQFMIKQ 120

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 399 QEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
           Q+E +   D  +  L  D FN   + I+S ++ + E++APWCGHC++   EY+K A  L
Sbjct: 5   QQEAVAPEDSAVVKLATDSFN---EYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL 60

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 15/120 (12%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV--DATVH 199
           ELT  +F+K ++N++   LVEF+APWCGHCK L   + KAA  L+G V++ AV  D   +
Sbjct: 21  ELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN 80
Query: 200 QRIAGEFNIRGYPTIKFFSP-------------GSRSASDAQEYNGGRTSQDIVTWALNK 246
           + +  ++++ G+PT+  F P              S SA   + Y+G RT   IV ++L++
Sbjct: 81  KALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSR 140

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
           +FD  +  ++   +VE+YAPWCGHC+     + K A  L
Sbjct: 26  SFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL 64

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 64/98 (65%), Gaps = 5/98 (5%)
Query: 147 NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL--EGKVKLGAVDATVHQRIAG 204
           NF+++V N +   L+EF+APWCGHCKNLEP +++   +L  +  + +  +DAT +  +  
Sbjct: 36  NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND-VPS 94
Query: 205 EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
            + +RG+PTI +FSP ++   + ++Y GGR   D +++
Sbjct: 95  PYEVRGFPTI-YFSPANKKL-NPKKYEGGRELSDFISY 130

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL 457
           NFD+ V   ++  ++E+YAPWCGHC++ + +Y +L   L
Sbjct: 36  NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKL 74

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK-AASELEG--KVKLGAVDATVH 199
           LT++NF+  +  ++ I  ++F+APWCGHCK L P WE+ +  E  G   VK+  VD T  
Sbjct: 12  LTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE 69
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
           + I  ++++RGYPT+  F    R      E++GGR    +  + L++
Sbjct: 70  RNICSKYSVRGYPTLLLF----RGGKKVSEHSGGRDLDSLHRFVLSQ 112

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK-AASELEG--KVKLGAVDATVH 199
           LT++NF+  +  ++ I  ++F+APWCGHCK L P WE+ +  E  G   VK+  VD T  
Sbjct: 5   LTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE 62
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
           + I  ++++RGYPT+  F  G +      E++GGR    +  + L++
Sbjct: 63  RNICSKYSVRGYPTLLLFRGGKK----VSEHSGGRDLDSLHRFVLSQ 105

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK-AASELEG--KVKLGAVDATVH 199
           LT++NF+  +  ++ I  ++F+APWCGHCK L P WE+ +  E  G   VK+  VD T  
Sbjct: 10  LTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE 67
Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
           + I  ++++RGYPT+  F    R      E++GGR    +  + L++
Sbjct: 68  RNICSKYSVRGYPTLLLF----RGGKKVSEHSGGRDLDSLHRFVLSQ 110

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 11  LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG 70
           +Y    ++I L    FD   + S E+W V +Y+P C HC      + + A  + G++++G
Sbjct: 92  IYDDDPEIITLERREFD-AAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIG 150
Query: 71  AVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIR 122
           AVN  +++ L    GV  +P++ IF        Y G R+ ++++  A++ +R
Sbjct: 151 AVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVR 202

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT 213
           NS ++W V F++P C HC +L P W + A E++G +++GAV+    + +     +  YP+
Sbjct: 112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPS 171
Query: 214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENV 251
           +  F    RS   A +YNG R+ + +V +A+      V
Sbjct: 172 LFIF----RSGMAAVKYNGDRSKESLVAFAMQHVRSTV 205

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
          I LT   F++KV++    W+V++YAPWCG CQ+F  E+  LA  +KG V+ G V+     
Sbjct: 6  IDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYP 65
Query: 79 SLSSSHGVTGFPTVKIFSDKR 99
                G+  +P+VK++  +R
Sbjct: 66 QTCQKAGIKAYPSVKLYQYER 86

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           +LT   F + V      W+V+F+APWCG C+N  P +E  A  ++GKV+ G VD   + +
Sbjct: 7   DLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQ 66
Query: 202 IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDI 239
              +  I+ YP++K +       S  +E    R ++ I
Sbjct: 67  TCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTI 104

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
            F++KV++    W+V++YAPWCG CQ+F  E+  LA  +K
Sbjct: 12  TFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK 51

>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal Protein Disulfide Isomerase Length = 121

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 10/101 (9%)
Query: 147 NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK-----AASELEGKVKLGAVDATVHQR 201
           N+ ++V +     L+EF+APWCGHCK L P +E+     A SE + +V +  VDAT +  
Sbjct: 16  NYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND- 74
Query: 202 IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
           +  E  I+G+PTIK +  G++       Y+G RT +D++ +
Sbjct: 75  VPDE--IQGFPTIKLYPAGAK--GQPVTYSGSRTVEDLIKF 111

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 156 DDI-WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI 214
           DD+  LV+F+APWCG C+ + P ++ AA+ L G+V+L  +D   H  +AG   I+G P  
Sbjct: 63  DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAF 122
Query: 215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
             F  G   A  A    G R + ++V +   K 
Sbjct: 123 ILFHKGRELARAA----GARPASELVGFVRGKL 151

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 53/95 (55%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCGHCK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of Human Thioredoxin-Related Transmembrane Protein Length = 126

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQR 201
           +TD N+ +L+   +  W++EF+APWC  C+NL+P WE  A   E  +V +  VD T    
Sbjct: 12  ITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPG 68
Query: 202 IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPP 253
           ++G F I   PTI     G     + + Y G RT +D + +  +K  +++ P
Sbjct: 69  LSGRFIINALPTIYHCKDG-----EFRRYQGPRTKKDFINFISDKEWKSIEP 115

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +FE  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  E+ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           ++ DS++++ V  S+   +V+F+APWCG CK + P  ++ A E  GK+ +  ++      
Sbjct: 4   DVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 202 IAGEFNIRGYPTIKFFSPGSRSAS 225
           IA ++NIR  PT+ FF  G R  S
Sbjct: 64  IATQYNIRSIPTVLFFKNGERKES 87

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           ++ DS++++ V  S+   +V+F+APWCG CK + P  ++ A E  GK+ +  ++      
Sbjct: 3   DVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 62
Query: 202 IAGEFNIRGYPTIKFFSPGSRSAS 225
           IA ++NIR  PT+ FF  G R  S
Sbjct: 63  IATQYNIRSIPTVLFFKNGERKES 86

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           E+TD NFE+ V  SD   LV+F+APWCG C+ + P  E+ A E EGKVK+  V+   +  
Sbjct: 5   EVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPN 64
Query: 202 IAGEFNIRGYPTIKFFSPGS 221
            A ++ IR  PT+  F  G 
Sbjct: 65  TAAQYGIRSIPTLLLFKNGQ 84

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVHQ 200
           L   NFE + ++      VEF+APWCGHCK L P W+K     +    + +  +D+T ++
Sbjct: 254 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 313
Query: 201 RIAGEFNIRGYPTIKFF-SPGSRSASDAQEYNGGRT 235
             A    +  +PT+KFF +   R+  D   YNG RT
Sbjct: 314 VEA--VKVHSFPTLKFFPASADRTVID---YNGERT 344

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGDVAATKVGALSKGQLKE 101

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR 234
           A ++ IRG PT+  F  G  +A+     + G+
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR 234
           A ++ IRG PT+  F  G  +A+     + G+
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  +  A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 8   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 67
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 68  APKYGIRGTPTLLLFKNGEVAATKVGALSKGQLKE 102

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVHQ 200
           L   NFE + ++      VEF+APWCGHCK L P W+K     +    + +  +D+T ++
Sbjct: 12  LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 71
Query: 201 RIAGEFNIRGYPTIKFF-SPGSRSASDAQEYNGGRT 235
             A    +  +PT+KFF +   R+  D   YNG RT
Sbjct: 72  VEA--VKVHSFPTLKFFPASADRTVID---YNGERT 102

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 17  LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 76
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 77  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 111

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A      + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAACKVGALSKGQLKE 101

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           +TD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   VTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A + +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG C+ + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN DISULFIDE Length = 519

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 152 VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDAT--VHQRIAGEF 206
           V  S   W VEFFA WCGH     P W++ A++++     + L  +D     +  +  EF
Sbjct: 26  VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREF 85
Query: 207 NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDI---VTWALNKYTENVPP 253
           NI G+PT++FF   +++ S A     G   Q +   +  AL  + +  PP
Sbjct: 86  NIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPP 135

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LT+ +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin Length = 104

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           L+DS+F+  V    D  ++ F   WC  CK ++P +E+ AS++EG ++   +DA   ++ 
Sbjct: 4   LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKT 63
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245
             E NIR  P++  F  G       + ++G     D+  W  N
Sbjct: 64  MAELNIRTLPSLALFVDGMIR----EVFSGTMNKSDLRYWINN 102

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IR  PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRSIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           ++ DS++++ V  S+   +V+F+APWCG  K + P  ++ A E  GK+ +  ++      
Sbjct: 4   DVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 202 IAGEFNIRGYPTIKFFSPGSRSAS 225
           IA ++NIR  PT+ FF  G R  S
Sbjct: 64  IATQYNIRSIPTVLFFKNGERKES 87

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 147 NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL--GAVDATVHQRIAG 204
            F+ +V +     L+EF+APWCGHCK LEP +     + +G+  L    +DAT +     
Sbjct: 16  TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITND 75
Query: 205 EFNIRGYPTIKFFSPGSR 222
           ++ + G+PTI F   G +
Sbjct: 76  QYKVEGFPTIYFAPSGDK 93

>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1 Length = 244

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 152 VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDAT--VHQRIAGEF 206
           V  S   W VEFFA WCGHC    P W   A +++     + L A+D     +  +  +F
Sbjct: 26  VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDF 85
Query: 207 NIRGYPTIKFFSPGSRSASDAQEYNGG---RTSQDIVTWALNKYTENVPP 253
           NI G+PT++FF   + + S A     G   +T ++ +  AL  + +  PP
Sbjct: 86  NIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPP 135

>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGH-CKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           LTD +F+  V  +D   LV+F+A WCG  CK + P  ++ A E +GK+ +  ++   +  
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG 66
Query: 202 IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
            A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 102

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WC  CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG  K + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG CK +    ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WCG  K + P  ++ A E +GK+ +  ++   +   
Sbjct: 27  LTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 86
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 87  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 121

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 51/95 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  +  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++  RG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYIERGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           + D  F+ +V  S    LV+F+APWCG C+ + P  ++ A E + K+K   ++      +
Sbjct: 6   VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNV 65
Query: 203 AGEFNIRGYPTIKFFSPGSR 222
           A E+ IR  PTI  F  G +
Sbjct: 66  ASEYGIRSIPTIMVFKGGKK 85

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 145 DSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG 204
           + N E+  Y  D   +V+F+A WCG CK + P  ++ A E +G++ +  VD    Q +AG
Sbjct: 27  EKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAG 86
Query: 205 EFNIRGYPTIKF 216
            F IR  P+I F
Sbjct: 87  AFGIRSIPSILF 98

>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa (Caca) Length = 108

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD +F+  V  +D   LV+F+A WC   K + P  ++ A E +GK+ +  ++   +   
Sbjct: 7   LTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 67  APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 142 ELTDSNFEKL--VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL------EGKVKLGA 193
           E+T  + E +  + N+ D+ LV F+A WC   + L P +E+A+  +      E +V    
Sbjct: 6   EITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFAR 65
Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPP 253
           VD   H  IA  + I  YPT+K F  G       +EY G R+ + +  +   + ++  P 
Sbjct: 66  VDCDQHSDIAQRYRISKYPTLKLFRNGXXX---KREYRGQRSVKALADYIRQQKSD--PI 120
Query: 254 PEIKQIVSEATFKEA 268
            EI+ +    T   +
Sbjct: 121 QEIRDLAEITTLDRS 135

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
           LV+FFAPWCG C+ + P  E+ A +  G++K+  V+   H  +A  + +R  PT+  F  
Sbjct: 54  LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRR 113
Query: 220 GSRSAS 225
           G+  A+
Sbjct: 114 GAPVAT 119

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%)
Query: 147 NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF 206
           +F+  V NS+   +V+F A WCG CK L P  EK  ++  GKV +  VD   H  +A E+
Sbjct: 22  DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEY 81
Query: 207 NIRGYPTI 214
            +   PT+
Sbjct: 82  EVSAVPTV 89

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LT+ NF++++ N + + LV+ +A WC  C   EP ++K A + +GK   G ++   +Q+I
Sbjct: 9   LTEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKI 67
Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
           A ++++   PT   F  G    S       G   +D +   +NKY
Sbjct: 68  ADKYSVLNIPTTLIFVNGQLVDSLV-----GAVDEDTLESTVNKY 107

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 17  DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE 76
           +VI  T    D K+++ D   +++++APWCG C+SF   + + A    G V+   VN + 
Sbjct: 39  EVINATAETLD-KLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA 97
Query: 77  EKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
           E +LS+   +   PT+ ++ + +      GA
Sbjct: 98  EPALSTRFRIRSIPTIXLYRNGKXIDXLNGA 128

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 144 TDSNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           T    +KL+   DD+  +++F+APWCG C++  P + + A+E  GKV+   V+      +
Sbjct: 44  TAETLDKLL--QDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPAL 101
Query: 203 AGEFNIRGYPTIKFFSPG 220
           +  F IR  PTI  +  G
Sbjct: 102 STRFRIRSIPTIXLYRNG 119

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
           TD +F      S+ + L +F+APWCG CK + P  E+   E+  K+K+  +D   +Q  A
Sbjct: 7   TDQSFS--AETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETA 64
Query: 204 GEFNIRGYPTIKFFSPG 220
           G++ +   PT+     G
Sbjct: 65  GKYGVMSIPTLLVLKDG 81

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           E+TD NF++ +     + LV+F+A WC  C+ + P  E+ A E EGK+ +  +D   + +
Sbjct: 6   EVTDQNFDETL-GQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 64
Query: 202 IAGEFNIRGYPTIKFFSPGS 221
            A  + +   PT+  F  G 
Sbjct: 65  TAXRYRVXSIPTVILFKDGQ 84

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           E+TD NF++ +     + LV+F+A WC  C+ + P  E+ A E EGK+ +  +D   + +
Sbjct: 5   EVTDQNFDETL-GQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 63
Query: 202 IAGEFNIRGYPTIKFFSPGS 221
            A  + +   PT+  F  G 
Sbjct: 64  TAXRYRVXSIPTVILFKDGQ 83

>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin Length = 123

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGH--------------CKNLEPHWEKAASELEGK 188
           LTD +F+  V  +D   LV+F+A WCG               CK + P  ++ A E +GK
Sbjct: 8   LTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK 67
Query: 189 VKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           + +  ++   +   A ++ IRG PT+  F  G  +A+     + G+  +
Sbjct: 68  LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 116

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           ++TD++F+  V +   + LV+F+A WCG CK + P  E+ A++ EGK  +  +D   +  
Sbjct: 7   KVTDADFDSKVESG--VQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPS 64
Query: 202 IAGEFNIRGYPTIKFFSPG 220
            A ++ +   PT+  F  G
Sbjct: 65  TAAKYEVMSIPTLIVFKDG 83

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           ++TD++F+  V +   + LV+F+A WCG CK + P  E+ A++ EGK  +  +D   +  
Sbjct: 8   KVTDADFDSKVESG--VQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPS 65
Query: 202 IAGEFNIRGYPTIKFFSPG 220
            A ++ +   PT+  F  G
Sbjct: 66  TAAKYEVMSIPTLIVFKDG 84

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 150 KLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNI 208
           K V   D + +++F+A WCG CK + P +EK +    G KV    VD     +IA E  I
Sbjct: 27  KQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGI 86
Query: 209 RGYPTIKFFSPGSR 222
           R  PT  FF  G +
Sbjct: 87  RAMPTFVFFKNGQK 100

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           ++TD++F+  V +   + LV+F+A WCG CK + P  E+ A++ EGK  +  +D   +  
Sbjct: 8   KVTDADFDSKVESG--VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPS 65
Query: 202 IAGEFNIRGYPTIKFFSPG 220
            A ++ +   PT+  F  G
Sbjct: 66  TAAKYEVMSIPTLIVFKDG 84

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 144 TDSNFEKLV-YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           T ++ EKL+  N   + +V+FFA WCG C+N+ P  E  A E+  +V+   VD   ++  
Sbjct: 6   TAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEA 64
Query: 203 AGEFNIRGYPTIKFFSPG 220
           A ++++   PT  F   G
Sbjct: 65  AAKYSVTAMPTFVFIKDG 82

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           +TD +FE+ V  +D   LV+F+A WCG C+ + P  E  A+E   K+++  ++   +   
Sbjct: 10  VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGT 69
Query: 203 AGEFNIRGYPTIKFFSPG 220
           A ++ +   PT+  +  G
Sbjct: 70  AAKYGVMSIPTLNVYQGG 87

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           ++DS+F++ V  +  + LV+F+A WCG CK + P   +   E  GKV +  V+   +   
Sbjct: 7   VSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPET 66
Query: 203 AGEFNIRGYPTIKFFSPG 220
              + +R  PT+     G
Sbjct: 67  PNAYQVRSIPTLMLVRDG 84

>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei Length = 140

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           E  D  + + V +S    +V F++P C +CK  EP++E+ A E       G ++   +  
Sbjct: 10  EFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPW 69
Query: 202 IAGEFNIRGYPTIKFFSPG 220
            A ++ ++G PT KFF  G
Sbjct: 70  TAEKYGVQGTPTFKFFCHG 88

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           ++TD++F   V +S+   LV+F+A WCG CK + P  E+ A+E    + +  +D   +  
Sbjct: 11  KVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE 70
Query: 202 IAGEFNIRGYPTIKFFSPG 220
            A  F +   PT+  F  G
Sbjct: 71  TARNFQVVSIPTLILFKDG 89

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           ++TD++F   V +S+   LV+F+A WCG CK + P  E+ A+E    + +  +D   +  
Sbjct: 16  KVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE 75
Query: 202 IAGEFNIRGYPTIKFFSPG 220
            A  F +   PT+  F  G
Sbjct: 76  TARNFQVVSIPTLILFKDG 94

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 150 KLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIR 209
           +L   S  + +++FFA WCG CK + P   + +++    V +  VD    + IA E+NI 
Sbjct: 14  QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 73
Query: 210 GYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
             PT  F   G +     +E+ G    +
Sbjct: 74  SMPTFVFLKNGVK----VEEFAGANAKR 97

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 150 KLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIR 209
           +L   S  + +++FFA WCG CK + P   + +++    V +  VD    + IA E+NI 
Sbjct: 19  QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 78
Query: 210 GYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
             PT  F   G +     +E+ G    +
Sbjct: 79  SMPTFVFLKNGVK----VEEFAGANAKR 102

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
           TD +F      S+ + L +F+APWCG  K + P  E+   E+  K+K+  +D   +Q  A
Sbjct: 7   TDQSFS--AETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETA 64
Query: 204 GEFNIRGYPTIKFFSPG 220
           G++ +   PT+     G
Sbjct: 65  GKYGVMSIPTLLVLKDG 81

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYP 212
           Y  D   +V+F+A WCG CK + P  E+ + E  GK+ +  V+      +A +F I+G P
Sbjct: 48  YLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIP 107
Query: 213 TIKF 216
           TI F
Sbjct: 108 TIWF 111

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
           TD +F      S+ + L +F+APWCG  K + P  E+   E+  K+K+  +D   +Q  A
Sbjct: 7   TDQSFS--AETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETA 64
Query: 204 GEFNIRGYPTIKFFSPG 220
           G++ +   PT+     G
Sbjct: 65  GKYGVMSIPTLLVLKDG 81

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
           E L    D + +V+F A WCG CK ++P +  + SE    V    VD    Q +A ++ I
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDAQDVAPKYGI 71
Query: 209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
           RG PT+  F  G  +A+     + G+  +
Sbjct: 72  RGIPTLLLFKNGEVAATKVGALSKGQLKE 100

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD+NF++ +   D   LV+F+A WCG C+ + P  E+ A     KV +  ++   +   
Sbjct: 5   LTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 203 AGEFNIRGYPTIKFFSPG 220
             +F I   PT+  F  G
Sbjct: 64  TSQFGIMSIPTLILFKGG 81

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           ++TD++F+  V +   + LV+F+A WCG  K + P  E+ A++ EGK  +  +D   +  
Sbjct: 8   KVTDADFDSKVESG--VQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPS 65
Query: 202 IAGEFNIRGYPTIKFFSPG 220
            A ++ +   PT+  F  G
Sbjct: 66  TAAKYEVMSIPTLIVFKDG 84

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD+NF++ +   D   LV+F+A WCG C+ + P  E+ A     KV +  ++   +   
Sbjct: 5   LTDANFQQAI-QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 203 AGEFNIRGYPTIKFFSPG 220
             +F I   PT+  F  G
Sbjct: 64  TSQFGIMSIPTLILFKGG 81

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD+NF++ +   D   LV+F+A WCG C+ + P  E+ A     KV +  ++   +   
Sbjct: 5   LTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 203 AGEFNIRGYPTIKFFSPG 220
             +F I   PT+  F  G
Sbjct: 64  TSQFGIMSIPTLILFKGG 81

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           LTD+NF++ +   D   LV+F+A WCG C+ + P  E+ A     KV +  ++   +   
Sbjct: 5   LTDANFQQAI-QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 203 AGEFNIRGYPTIKFFSPG 220
             +F I   PT+  F  G
Sbjct: 64  TSQFGIMSIPTLILFKGG 81

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
          VI L + NFD   + S E+ +V+++A WC  C        +LA     V   G +N+DE 
Sbjct: 1  VIHLDSKNFD-SFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQV-GFGKLNSDEN 58
Query: 78 KSLSSSHGVTGFPTVKIFSD 97
            +++ +GV   PTV  F D
Sbjct: 59 PDIAARYGVMSLPTVIFFKD 78

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           ++TD++F+  V +   + LV+F+A  CG CK + P  E+ A++ EGK  +  +D   +  
Sbjct: 7   KVTDADFDSKVESG--VQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPS 64
Query: 202 IAGEFNIRGYPTIKFFSPG 220
            A ++ +   PT+  F  G
Sbjct: 65  TAAKYEVMSIPTLIVFKDG 83

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYP 212
           Y  D   +V+F+A WCG CK + P  E+ + E  GK+ +  V+      +A +F I+  P
Sbjct: 48  YLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIP 107
Query: 213 TIKF 216
           TI F
Sbjct: 108 TIWF 111

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
           ++TD++F   V +S+   LV+F+A WCG  K + P  E+ A+E    + +  +D   +  
Sbjct: 13  KVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPE 72
Query: 202 IAGEFNIRGYPTIKFFSPG 220
            A  F +   PT+  F  G
Sbjct: 73  TARNFQVVSIPTLILFKDG 91

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
           E L    D + +V+F A WCG CK ++P +  + SE    V    VD    Q +A E  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDAQDVASEAEV 71
Query: 209 RGYPTIKFFSPGSR 222
           +  PT +FF  G +
Sbjct: 72  KATPTFQFFKKGQK 85

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
           E L    D + +V+F A WCG CK ++P +  + SE    V    VD    Q +A E  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASECEV 71
Query: 209 RGYPTIKFFSPGSR 222
           +  PT +FF  G +
Sbjct: 72  KSMPTFQFFKKGQK 85

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 152 VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGY 211
           + + +++ +V+FFA WCG CK + P +E+  S+   K+    VD      +  + NI   
Sbjct: 22  IISQNELVIVDFFAEWCGPCKRIAPFYEE-CSKTYTKMVFIKVDVDEVSEVTEKENITSM 80
Query: 212 PTIKFFSPGS 221
           PT K +  GS
Sbjct: 81  PTFKVYKNGS 90

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
           E L    D + +V+F A WCG CK ++P +  + SE    V    VD    Q +A E  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASESEV 71
Query: 209 RGYPTIKFFSPGSR 222
           +  PT +FF  G +
Sbjct: 72  KSMPTFQFFKKGQK 85

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
           E L    D + +V+F A WCG CK ++P +  + SE    V    VD    Q +A E  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVNDCQDVASECEV 71
Query: 209 RGYPTIKFFSPGSR 222
           +  PT +FF  G +
Sbjct: 72  KCMPTFQFFKKGQK 85

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
           E L    D + +V+F A WCG CK ++P +  + SE    V    VD    Q +A E  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASEXEV 71
Query: 209 RGYPTIKFFSPGSR 222
           +  PT +FF  G +
Sbjct: 72  KCMPTFQFFKKGQK 85

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
           E L    D + +V+F A WCG CK ++P +  + SE    V    VD    Q +A E  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASECEV 71
Query: 209 RGYPTIKFFSPGSRSASDAQEYNGGR 234
           +  PT +FF  G +      E++G  
Sbjct: 72  KCMPTFQFFKKGQKVG----EFSGAN 93

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           L   NF++ +   + I +V+F+A WC  C  L P  E+ A++   +V  G ++    Q I
Sbjct: 11  LNSKNFDEFI-TKNKIVVVDFWAEWCAPCLILAPVIEELANDY-PQVAFGKLNTEESQDI 68
Query: 203 AGEFNIRGYPTIKFFSPG 220
           A  + I   PTI FF  G
Sbjct: 69  AMRYGIMSLPTIMFFKNG 86

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
           E L    D + +V+F A WCG CK ++P +  + SE    V    VD    Q +A E  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPCKMIKPFFH-SLSEKYSNVIFLEVDVDDCQDVASECEV 71
Query: 209 RGYPTIKFFSPGSR 222
           +  PT +FF  G +
Sbjct: 72  KCTPTFQFFKKGQK 85

>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
          SY+ + KLT       +IK ++  ++++YA WCG C+  +    KL  A    V+    +
Sbjct: 10 SYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCD 68
Query: 74 ADEEKSLSSSHGVTGFPTVKIFSD 97
           DE   ++    VT  PT  +  D
Sbjct: 69 VDESPDIAKECEVTAMPTFVLGKD 92

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
           E L    D + +V+F A WCG  K ++P +  + SE    V    VD    Q +A E  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPSKMIKPFFH-SLSEKYSNVIFLEVDVDDSQDVASESEV 71
Query: 209 RGYPTIKFFSPGSR 222
           +  PT +FF  G +
Sbjct: 72  KSMPTFQFFKKGQK 85

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
           E L    D + +V+F A WCG  K ++P +  + SE    V    VD    Q +A E  +
Sbjct: 13  EALDAAGDKLVVVDFSATWCGPAKMIKPFFH-SLSEKYSNVIFLEVDVDDAQDVASEAEV 71
Query: 209 RGYPTIKFFSPGSR 222
           +  PT +FF  G +
Sbjct: 72  KATPTFQFFKKGQK 85

>pdb|1THX|A Chain A, Thioredoxin-2 Length = 115

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           +TD+ FE  V  ++   LV F+A WCG C+ + P    AA+    ++K+  ++   +   
Sbjct: 12  ITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTT 71
Query: 203 AGEFNIRGYPTIKF 216
             ++ + G P ++ 
Sbjct: 72  VKKYKVEGVPALRL 85

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE 205
           S ++  + + D + +V+FFA WCG CK + P  EK A E         +D      +A +
Sbjct: 16  SEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFA-EQYSDAAFYKLDVDEVSDVAQK 74
Query: 206 FNIRGYPTIKFFSPG 220
             +   PT+ F+  G
Sbjct: 75  AEVSSMPTLIFYKGG 89

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE 205
           S ++  + + D + +V+FFA WCG CK + P  EK A E         +D      +A +
Sbjct: 9   SEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFA-EQYSDAAFYKLDVDEVSDVAQK 67
Query: 206 FNIRGYPTIKFFSPG 220
             +   PT+ F+  G
Sbjct: 68  AEVSSMPTLIFYKGG 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	461
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	7e-84
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-73
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-68
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	6e-65
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-42
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-32
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-80
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-47
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	1e-27
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	1e-12
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	1e-09
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	3e-74
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	9e-39
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	9e-22
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	1e-63
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	7e-11
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	3e-59
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	8e-46
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	4e-15
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-58
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	9e-50
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-40
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-25
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	2e-57
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	7e-43
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	9e-15
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	1e-56
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	4e-50
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	7e-14
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	2e-56
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	3e-08
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	5e-55
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	3e-27
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	6e-21
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	1e-06
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	4e-54
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	5e-48
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	1e-15
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	3e-52
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	5e-08
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	6e-52
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-41
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	6e-14
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	2e-50
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	9e-38
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	1e-13
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	3e-50
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	5e-37
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	4e-11
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	1e-48
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	2e-39
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	2e-12
1mek_A	120	Protein disulfide isomerase; electron transport, r	1e-48
1mek_A	120	Protein disulfide isomerase; electron transport, r	6e-39
1mek_A	120	Protein disulfide isomerase; electron transport, r	2e-13
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	7e-47
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	1e-44
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	4e-14
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	4e-44
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	3e-34
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	7e-14
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	5e-44
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	4e-35
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	1e-13
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	1e-40
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	3e-26
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	1e-09
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	1e-39
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	7e-31
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	8e-13
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	1e-37
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	4e-29
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	5e-11
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	9e-37
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	1e-12
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	7e-23
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	3e-16
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	2e-04
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	9e-23
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	2e-16
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	4e-04
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	2e-22
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	7e-16
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	2e-04
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	2e-22
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	2e-17
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	8e-05
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	2e-21
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	6e-15
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	2e-04
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	4e-21
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	2e-15
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	2e-04
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	5e-21
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	2e-14
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	3e-04
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	5e-21
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	6e-15
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	3e-04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	6e-21
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	3e-15
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	6e-21
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	5e-14
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	6e-04
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	7e-21
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	2e-14
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	4e-04
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	8e-21
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	2e-14
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	3e-04
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	8e-21
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	2e-14
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	4e-04
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	9e-21
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-20
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	8e-04
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	2e-20
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	3e-14
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	4e-04
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	2e-20
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	3e-14
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	3e-04
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	2e-20
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	3e-14
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	1e-04
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	3e-20
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	3e-14
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	4e-20
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	7e-13
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	8e-06
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	6e-20
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	2e-13
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	9e-04
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	1e-19
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	1e-13
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	9e-05
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	1e-19
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	4e-14
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	7e-04
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	1e-19
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	6e-11
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	3e-19
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	8e-14
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	5e-19
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	5e-13
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	5e-19
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	7e-14
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	6e-04
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	8e-19
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	3e-13
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	1e-18
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	8e-12
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	1e-18
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	2e-11
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	5e-18
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	1e-13
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	5e-04
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	1e-17
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	8e-13
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	1e-17
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	2e-12
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	1e-17
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	8e-14
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	1e-17
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	2e-12
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	4e-17
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	2e-11
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	8e-17
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	3e-11
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	1e-16
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	7e-11
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	1e-16
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	2e-11
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	2e-16
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	2e-12
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	3e-16
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	3e-10
2l57_A	126	Uncharacterized protein; structural genomics, unkn	1e-15
2l57_A	126	Uncharacterized protein; structural genomics, unkn	6e-12
2l57_A	126	Uncharacterized protein; structural genomics, unkn	4e-04
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	2e-15
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	3e-13
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	4e-15
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	9e-11
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	6e-15
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	8e-10
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	1e-14
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	2e-10
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	1e-14
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	2e-11
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	5e-14
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	3e-11
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	6e-14
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	2e-09
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	9e-04
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	9e-14
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	9e-10
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	1e-13
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	1e-11
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	1e-13
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	5e-09
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	2e-13
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	2e-10
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	2e-13
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	7e-09
2kuc_A	130	Putative disulphide-isomerase; structural genomics	4e-13
2kuc_A	130	Putative disulphide-isomerase; structural genomics	2e-09
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	2e-12
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	5e-10
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	2e-12
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	2e-09
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	2e-12
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	1e-09
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	2e-12
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	1e-08
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	2e-12
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	6e-10
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	3e-12
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	4e-12
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	4e-12
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	1e-09
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	5e-12
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	2e-06
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	5e-12
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	6e-12
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	2e-06
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	9e-12
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	2e-09
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	2e-11
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	2e-04
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	2e-11
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	8e-09
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	8e-11
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	2e-08
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	1e-10
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	7e-08
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	2e-07
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	9e-06
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	2e-07
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	3e-07
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	1e-06
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	1e-06
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	4e-05
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	4e-06
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	5e-06
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	1e-04
2qsi_A	137	Putative hydrogenase expression/formation protein;	1e-05
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	1e-05
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	1e-05
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	1e-04
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	1e-04
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	3e-04
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	8e-04
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	8e-04

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  273 bits (698), Expect = 7e-84
 Identities = 79/364 (21%), Positives = 146/364 (40%), Gaps = 39/364 (10%)

Query: 9   HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK 68
                  S V  L   NF        E W+V+++APW    ++   E  K +T L G +K
Sbjct: 433 FAKESVNSHVTTLGPQNFPAS---DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLK 489

Query: 69  VGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGG 128
           VG ++    + L + + +  +PT  +F ++ +   Y+G  +A+ I++             
Sbjct: 490 VGTLDCTIHEGLCNMYNIQAYPTTVVF-NQSSIHEYEGHHSAEQILEFI----------- 537

Query: 129 KSGGRKGSSKAVVELTDSNFEKLVYN--SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE 186
                   + +VV LT S F +LV     D++W+V+F++PW    + L P W++ A  L 
Sbjct: 538 ----EDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT 593

Query: 187 GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG-RTSQDIVTWALN 245
           G + +G+VD   +     + N++ YP I+F+   S  A     YNG  R +  + +W L 
Sbjct: 594 GLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLG 653

Query: 246 KYTENVPPPEIKQIVSEATFKEACEDHPLCIVAV-LPHILDCQSSCRNNYLEILQKLGDK 304
                  P     +  +   ++  +     +V    P     Q     N+    + L   
Sbjct: 654 F-----LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQ-----NFAPEFELLARM 703

Query: 305 YKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLK---GPFSYDGINE 361
            K KV      +   Q   +   + G   YP++ +   ++ K S+ +          I  
Sbjct: 704 IKGKV---RAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAA 760

Query: 362 FLRD 365
            +  
Sbjct: 761 LIYG 764

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  245 bits (625), Expect = 2e-73
 Identities = 72/453 (15%), Positives = 142/453 (31%), Gaps = 78/453 (17%)

Query: 9   HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK 68
                     I        D  + S E+W V +Y+P   H       + + A  + G+++
Sbjct: 108 DFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLR 167

Query: 69  VGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGG 128
           +GAVN  +++ L    GV  +P++ IF        Y G R+ ++++  A++ +R      
Sbjct: 168 IGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRS----- 222

Query: 129 KSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWE--KAASELE 186
                      V EL+  NF   +  +     V +   +C   ++        + +  L+
Sbjct: 223 ----------TVTELSTGNFVNAI-ETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLD 271

Query: 187 GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
           G V +G VD      +    +     T  F            +             A   
Sbjct: 272 GLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGA-----TLNDREKSSVLFLNSLDAKEI 326

Query: 247 YTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYK 306
           Y E +      +++S    ++    H   +        +            L+KL    K
Sbjct: 327 YMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFGKNENAND-------PELKKLKTLLK 379

Query: 307 QKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMK-YSLLKGPFSYDGINEFLRD 365
            +    +  +  + P + + L +     P++AV   +  K Y +  G      I  F + 
Sbjct: 380 NEHIQVVRFDCSSAPGICSDLYV---FQPSLAVFKGQGTKEYEIHHGKKILYDILAFAK- 435

Query: 366 LSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVI 425
                                                 +  +  +  L    F       
Sbjct: 436 --------------------------------------ESVNSHVTTLGPQNFP-----A 452

Query: 426 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
              E W+V+++APW    ++   E  K +T L 
Sbjct: 453 SDKEPWLVDFFAPWSPPSRALLPELRKASTLLY 485

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  231 bits (590), Expect = 2e-68
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 16/250 (6%)

Query: 16  SDVIKLTTSNFDDKVI--KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
             V+ LT S F++ V   K DEVW+V++Y+PW    Q    E+ ++A  L G++ VG+V+
Sbjct: 543 PSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVD 602

Query: 74  ADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGG 132
             +  S  +   V  +P ++ +         Y      +             +       
Sbjct: 603 CGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLP------ 656

Query: 133 RKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLG 192
                +A ++LT   F + V      W+V+F+APW G  +N  P +E  A  ++GKV+ G
Sbjct: 657 -----QASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAG 711

Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVP 252
            VD   + +   +  I+ YP++K +       S  +E    R ++ I      K      
Sbjct: 712 KVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET--L 769

Query: 253 PPEIKQIVSE 262
             ++K+   E
Sbjct: 770 QSQVKRNKDE 779

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  222 bits (566), Expect = 6e-65
 Identities = 85/450 (18%), Positives = 159/450 (35%), Gaps = 78/450 (17%)

Query: 12  YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVG 70
             +  D   L+ +  +D++           +  +  +  +   E  KL T LK   ++V 
Sbjct: 331 IHNLPDFELLSANQLEDRLAHHR----WLVFFHFGKNENANDPELKKLKTLLKNEHIQVV 386

Query: 71  AVNADEEKSLSSSHGVTGFPTVKIFSDKRN--PTPYQGARTADAIIDVALEAIRQKVKGG 128
             +      + S   V   P++ +F  +       + G +    I+  A E+        
Sbjct: 387 RFDCSSAPGICSDLYVF-QPSLAVFKGQGTKEYEIHHGKKILYDILAFAKES-------- 437

Query: 129 KSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK 188
                   +  V  L   NF     +  + WLV+FFAPW    + L P   KA++ L G+
Sbjct: 438 -------VNSHVTTLGPQNFPA---SDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ 487

Query: 189 VKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYT 248
           +K+G +D T+H+ +   +NI+ YPT   F+  S       EY G  +++ I+ +      
Sbjct: 488 LKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSI-----HEYEGHHSAEQILEFI----- 537

Query: 249 ENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQK 308
           E++  P +  +      +   +     +  V  +      S     +   +++       
Sbjct: 538 EDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPS--QVLMPEWKRMARTLTGL 595

Query: 309 VWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSY 368
           +      +            +    YP +     K  K       + Y   N + RD   
Sbjct: 596 I-NVGSVDCGQYHSFCTQENVQ--RYPEIRFYPQKSSK------AYQYHSYNGWNRDAYS 646

Query: 369 GRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSD 428
                             + +W    G LPQ                    F++KV++  
Sbjct: 647 ------------------LRSW--GLGFLPQASIDLTPQ-----------TFNEKVLQGK 675

Query: 429 EVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
             W+V++YAPW G  Q+F  E+  LA  +K
Sbjct: 676 THWVVDFYAPWSGPSQNFAPEFELLARMIK 705

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  158 bits (400), Expect = 5e-42
 Identities = 79/447 (17%), Positives = 147/447 (32%), Gaps = 79/447 (17%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK--DEYMKLATALKGVVKVGAVN 73
           S V +L+T NF    I++     V +   +C   +        ++L+  L G+V VG V+
Sbjct: 222 STVTELSTGNFV-NAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVD 280

Query: 74  ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGR 133
            D + SL  S   T   T             + +      +D   + I  ++        
Sbjct: 281 CDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDA--KEIYMEIIHNLPDFE 338

Query: 134 KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL-EGKVKLG 192
             S+  + +            +   WLV F   +  +    +P  +K  + L    +++ 
Sbjct: 339 LLSANQLED----------RLAHHRWLVFFH--FGKNENANDPELKKLKTLLKNEHIQVV 386

Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVP 252
             D +    I  +  +   P++  F        + + ++G +   DI+ +A      +V 
Sbjct: 387 RFDCSSAPGICSDLYVF-QPSLAVFKGQG--TKEYEIHHGKKILYDILAFAKESVNSHV- 442

Query: 253 PPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGW 312
                  +    F  + +  P  +    P     +       L  L+K       ++   
Sbjct: 443 -----TTLGPQNFPAS-DKEPWLVDFFAPWSPPSR-----ALLPELRKASTLLYGQL-KV 490

Query: 313 IWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKM-KYSLLKGPFSYDGINEFLRDLSYGRG 371
              +      L N+  I    YP   V N   + +Y   +G  S + I EF+ DL     
Sbjct: 491 GTLDCTIHEGLCNMYNI--QAYPTTVVFNQSSIHEY---EGHHSAEQILEFIEDLR---- 541

Query: 372 HTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVW 431
                                              +  +  L    FN   K  K DEVW
Sbjct: 542 -----------------------------------NPSVVSLTPSTFNELVKQRKHDEVW 566

Query: 432 IVEYYAPWCGHCQSFKDEYMKLATALK 458
           +V++Y+PW    Q    E+ ++A  L 
Sbjct: 567 MVDFYSPWSHPSQVLMPEWKRMARTLT 593

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  130 bits (328), Expect = 1e-32
 Identities = 63/371 (16%), Positives = 109/371 (29%), Gaps = 61/371 (16%)

Query: 88  GFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSN 147
            +  +K   D R      G +  +                    G       ++ L    
Sbjct: 70  AYEVLKDE-DLRKKYDKYGEKGLEDNQG---GQYESWSYYRYDFGIYDDDPEIITLERRE 125

Query: 148 FEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFN 207
           F+  V NS ++W V F++P   H  +L P W + A E++G +++GAV+    + +     
Sbjct: 126 FDAAV-NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKG 184

Query: 208 IRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKE 267
           +  YP++  F  G  +     +YNG R+ + +V +A+      V        +S   F  
Sbjct: 185 VNSYPSLFIFRSGMAA----VKYNGDRSKESLVAFAMQHVRSTVT------ELSTGNFVN 234

Query: 268 ACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVL 327
           A E        V   I  C         +   +L       V    W +  AQ  L   L
Sbjct: 235 AIETAF--AAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLV-NVGWVDCDAQDSLCKSL 291

Query: 328 EIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQV 387
           +         A            K    +    +                          
Sbjct: 292 DTTA---STTAYFPPGATLNDREKSSVLFLNSLDAK------------------------ 324

Query: 388 DAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFK 447
                   E+  E   +L D +L    + E                  +  +  +  +  
Sbjct: 325 --------EIYMEIIHNLPDFELLSANQLEDRLAHH--------RWLVFFHFGKNENAND 368

Query: 448 DEYMKLATALK 458
            E  KL T LK
Sbjct: 369 PELKKLKTLLK 379

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  247 bits (633), Expect = 3e-80
 Identities = 85/237 (35%), Positives = 124/237 (52%), Gaps = 22/237 (9%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAV 72
           + V+ L  +NFD+  +   +  ++E+YAPWCGHC+ F  EY K+A  LK     + V  +
Sbjct: 15  NGVLVLNDANFDN-FVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKI 73

Query: 73  NADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGG 132
           +A     L+S   V+G+PT+KI         Y+G+RT + I+    E  +          
Sbjct: 74  DATSASVLASRFDVSGYPTIKILKKG-QAVDYEGSRTQEEIVAKVREVSQPDWTPPPE-- 130

Query: 133 RKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---V 189
                   + LT  NF+++V N  DI LVEF+APWCGHCK L P +EKAA EL  +   +
Sbjct: 131 ------VTLVLTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPI 183

Query: 190 KLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
            L  VDAT    +A  F++ GYPT+K F  G        +YNG R    IV + + +
Sbjct: 184 PLAKVDATAETDLAKRFDVSGYPTLKIFRKG-----RPYDYNGPREKYGIVDYMIEQ 235

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  162 bits (411), Expect = 3e-47
 Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 18/237 (7%)

Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKLG 192
               V+ L D+NF+  V    D  L+EF+APWCGHCK   P +EK A+ L+ K   + + 
Sbjct: 13  EENGVLVLNDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVA 71

Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVP 252
            +DAT    +A  F++ GYPTIK    G      A +Y G RT ++IV         +  
Sbjct: 72  KIDATSASVLASRFDVSGYPTIKILKKG-----QAVDYEGSRTQEEIVAKVREVSQPDWT 126

Query: 253 -PPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWG 311
            PPE+  ++++  F E   D  + +V                Y +  ++L  +       
Sbjct: 127 PPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLA 186

Query: 312 WIWSEAVAQPDLENVLEIGGFGYPAMAVL-NAKKMKYSLLKGPFSYDGINEFLRDLS 367
            +  +A A+ DL    ++   GYP + +    +   Y+   GP    GI +++ + S
Sbjct: 187 KV--DATAETDLAKRFDVS--GYPTLKIFRKGRPYDYN---GPREKYGIVDYMIEQS 236

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  109 bits (273), Expect = 1e-27
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 13  PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKV 69
           P     + LT  NFD +V+   ++ +VE+YAPWCGHC+    EY K A  L      + +
Sbjct: 127 PPPEVTLVLTKENFD-EVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPL 185

Query: 70  GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
             V+A  E  L+    V+G+PT+KIF   R P  Y G R    I+D
Sbjct: 186 AKVDATAETDLAKRFDVSGYPTLKIFRKGR-PYDYNGPREKYGIVD 230

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 395 GELPQEEDIDLSDV-DLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKL 453
           G L  E+D+++ +   +  L    F   D  +   +  ++E+YAPWCGHC+ F  EY K+
Sbjct: 1   GPLGSEDDLEVKEENGVLVLNDANF---DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKI 57

Query: 454 ATALK 458
           A  LK
Sbjct: 58  ANILK 62

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 39/127 (30%)

Query: 333 GYPAMAVL-NAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWD 391
           GYP + +L   + + Y    G  + + I   +R+                          
Sbjct: 89  GYPTIKILKKGQAVDYE---GSRTQEEIVAKVRE------------------------VS 121

Query: 392 GKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYM 451
             D   P E  + L+  +            D+V+   ++ +VE+YAPWCGHC+    EY 
Sbjct: 122 QPDWTPPPEVTLVLTKENF-----------DEVVNDADIILVEFYAPWCGHCKKLAPEYE 170

Query: 452 KLATALK 458
           K A  L 
Sbjct: 171 KAAKELS 177

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  240 bits (612), Expect = 3e-74
 Identities = 97/452 (21%), Positives = 163/452 (36%), Gaps = 61/452 (13%)

Query: 16  SDVIKLTTSNFDDKV--IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
           SDV++LT  NF+ ++    S  + +VE++APWCGH +    EY   AT LKG+V +  V+
Sbjct: 1   SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVD 60

Query: 74  ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGR 133
                +  + +GV+G+PT+KIF D      Y G RTAD I+                  +
Sbjct: 61  CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHL---------------K 105

Query: 134 KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193
           K +  A V L      K   +  D  +V FF        +    + KAAS L    +   
Sbjct: 106 KQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHS---EFLKAASNLRDNYRFAH 162

Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEY---NGGRTSQDIVTWALNKYTEN 250
            +    + +  E++  G   I F      +  + +         TS  I  +        
Sbjct: 163 TNV---ESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGI 219

Query: 251 VPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSC---RNNYLEILQKLGDKYKQ 307
            P       ++E       +   L I                 RN  + + +K  D   +
Sbjct: 220 CPH------MTEDNKDL-IQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHK 272

Query: 308 KVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLL-KGPFSYDGINEFLRDL 366
             +     +  +    +  LE      P +A+  AK  K+ +  +       +  FL+D 
Sbjct: 273 LNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDY 332

Query: 367 SYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIK 426
             G               +                                 NFD+ V  
Sbjct: 333 FDGNLKRYLKSEPIPESNDGPVKVV------------------------VAENFDEIVNN 368

Query: 427 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
            ++  ++E+YAPWCGHC++ + +Y +L   L 
Sbjct: 369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLS 400

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  145 bits (367), Expect = 9e-39
 Identities = 53/252 (21%), Positives = 96/252 (38%), Gaps = 24/252 (9%)

Query: 37  WIVEYYAPWCGHC----QSFKDEYMKLATALKG-------VVKVGAVNADEEKSLSSSHG 85
            ++ YY             +++  M +A             V      + E         
Sbjct: 236 LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLEST 295

Query: 86  VTGFPTVKIFSD--KRNPTPYQGARTADAIIDVA--LEAIRQKVKGGKSGGRKGSSKAVV 141
               P V I +   ++     + +R   A+            K         + +   V 
Sbjct: 296 AGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVK 355

Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVH 199
            +   NF+++V N +   L+EF+APWCGHCKNLEP +++   +L     + +  +DAT +
Sbjct: 356 VVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN 415

Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQI 259
             +   + +RG+PTI F     +   + ++Y GGR   D +++           P + Q 
Sbjct: 416 D-VPSPYEVRGFPTIYFSPANKK--LNPKKYEGGRELSDFISYL----QREATNPPVIQE 468

Query: 260 VSEATFKEACED 271
                 K+A ED
Sbjct: 469 EKPKKKKKAQED 480

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 96.9 bits (240), Expect = 9e-22
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 12  YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV--VKV 69
             +   V  +   NFD+ V   ++  ++E+YAPWCGHC++ + +Y +L   L     + +
Sbjct: 348 ESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVI 407

Query: 70  GAVNADEEKSLSSSHGVTGFPTVKIFS--DKRNPTPYQGARTADAIID 115
             ++A     + S + V GFPT+       K NP  Y+G R     I 
Sbjct: 408 AKMDAT-ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFIS 454

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  209 bits (533), Expect = 1e-63
 Identities = 65/405 (16%), Positives = 138/405 (34%), Gaps = 54/405 (13%)

Query: 13  PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK------GV 66
           P  S++  L T N D+ ++ + +V +V +YA WC   Q     + + +  +K        
Sbjct: 2   PLGSEITSLDTENIDE-ILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQ 60

Query: 67  VKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQKV 125
           V    V+ D+   ++  + ++ +PT+K+F +       Y+G R+  A+ D          
Sbjct: 61  VVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYI-------- 112

Query: 126 KGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL 185
                  R+  S  + E+ D        +     ++ +F        +    +E+ A+ L
Sbjct: 113 -------RQQKSDPIQEIRDLAEIT-TLDRSKRNIIGYFE---QKDSDNYRVFERVANIL 161

Query: 186 EGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQD-IVTWAL 244
                  +    V      +        I +  PG   ++    Y G  T+ D    W  
Sbjct: 162 HDDCAFLSAFGDVS-----KPERYSGDNIIYKPPG--HSAPDMVYLGAMTNFDVTYNWIQ 214

Query: 245 NKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDK 304
           +K       P +++I  E   +   E  P  I+  +       +     +   + +    
Sbjct: 215 DKCV-----PLVREITFENGEELTEEGLPFLILFHMKE----DTESLEIFQNEVARQLIS 265

Query: 305 YKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKM-KYSLLKGPFSYDGINEFL 363
            K  +  ++ ++          ++      P +A+ + + M  +   K       + +F+
Sbjct: 266 EKGTIN-FLHADCDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFV 324

Query: 364 RDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDV 408
            DL  G+ H         P        D   GE  Q+      + 
Sbjct: 325 FDLHSGKLH-REFHHGPDP-------TDTAPGEQAQDVASSPPES 361

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 62.7 bits (152), Expect = 7e-11
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           N D+ ++ + +V +V +YA WC   Q     + + +  +K
Sbjct: 14  NIDE-ILNNADVALVNFYADWCRFSQMLHPIFEEASDVIK 52

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  193 bits (492), Expect = 3e-59
 Identities = 38/250 (15%), Positives = 77/250 (30%), Gaps = 23/250 (9%)

Query: 6   ASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG 65
           + +  LY     +  L        V+ S   W VE++A WCGHC +F   +  LA  +K 
Sbjct: 2   SHMSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKA 61

Query: 66  ---VVKVGAVNADEE--KSLSSSHGVTGFPTVKIF----SDKRNPTPYQGARTADAIIDV 116
               + + A++  EE   ++     + GFPTV+ F     +               + + 
Sbjct: 62  WRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRER 121

Query: 117 ALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEP 176
            ++A+                       +        N+++   + F        + +  
Sbjct: 122 LIDALESHHDTWP----PACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVAL 177

Query: 177 HWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTS 236
              +        V +  V  T    +  +F +  +P+                      S
Sbjct: 178 DLSQ-----HKGVAVRRVLNT-EANVVRKFGVTDFPSCYLLFRNGS----VSRVPVLMES 227

Query: 237 QDIVTWALNK 246
           +   T  L +
Sbjct: 228 RSFYTAYLQR 237

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  158 bits (401), Expect = 8e-46
 Identities = 48/244 (19%), Positives = 84/244 (34%), Gaps = 26/244 (10%)

Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLG 192
            S  +  L        V  S   W VEFFA WCGHC    P W   A +++     + L 
Sbjct: 10  PSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLA 69

Query: 193 AVDAT--VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN----- 245
           A+D     +  +  +FNI G+PT++FF   + + S A     G   Q +    ++     
Sbjct: 70  ALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESH 129

Query: 246 --KYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGD 303
              +    PP E   +     F     +  L ++             R   L++ Q  G 
Sbjct: 130 HDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXG----GSYLAREVALDLSQHKGV 185

Query: 304 KYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFL 363
             ++            + ++     +    +P+  +L        +     S      +L
Sbjct: 186 AVRRV--------LNTEANVVRKFGVT--DFPSCYLLFRNGSVSRVPVLMESRSFYTAYL 235

Query: 364 RDLS 367
           + LS
Sbjct: 236 QRLS 239

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 73.9 bits (181), Expect = 4e-15
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
                V+ S   W VE++A WCGHC +F   +  LA  +K
Sbjct: 21  TVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVK 60

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  199 bits (506), Expect = 2e-58
 Identities = 86/454 (18%), Positives = 153/454 (33%), Gaps = 62/454 (13%)

Query: 11  LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKV 69
           + P  S V+KL T +F++  I+S ++ + E++APWCGHC++   EY+K A  L    + +
Sbjct: 9   VAPEDSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITL 67

Query: 70  GAVNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIIDVALEAIRQKVKG 127
             ++  E + L   H + GFP++KIF  SD  N   Y+G RTA+AI+   ++  +  V  
Sbjct: 68  AQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAV 127

Query: 128 GKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG 187
                    +     L +  F   V         +F A +          ++  ++E   
Sbjct: 128 --------VADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAE--- 176

Query: 188 KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
                                  +    +                     D       K+
Sbjct: 177 ------------------NADDDFKLSIYLPSAMDEPVVYNGKKADIADAD----VFEKW 214

Query: 248 TENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQ 307
            +    P   +I      +      PL  +                Y  +  +L  K + 
Sbjct: 215 LQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDE------EELEEYKPLFTELAKKNRG 268

Query: 308 KVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSL---LKGPFSYDGINEFLR 364
            +  ++  +A         L +             + +KY L    +  F        L 
Sbjct: 269 LM-NFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLE 327

Query: 365 DLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKV 424
             +        +KG A P +   + ++ +D  + Q                   N D+ V
Sbjct: 328 SKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQL---------------VGKNHDEIV 372

Query: 425 IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
               +  +V YYAPWCGHC+     Y +LA    
Sbjct: 373 NDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYA 406

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  176 bits (446), Expect = 9e-50
 Identities = 53/277 (19%), Positives = 103/277 (37%), Gaps = 26/277 (9%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
             ++  S F         + +   +       + +K  + +LA   +G++   +++A + 
Sbjct: 223 FGEIDGSVFAQ--YVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKF 280

Query: 78  KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID-------VALEAIRQKVKGGKS 130
              + +  +     +    D      Y   + ++   D       +  +AI   VK    
Sbjct: 281 GRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLK 340

Query: 131 GGRKGSSK----------AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK 180
           G      K          +V +L   N +++V +     LV ++APWCGHCK L P +++
Sbjct: 341 GDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQE 400

Query: 181 AASEL---EGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
            A         V +  +D T +        I GYPTI  +  G +  S++  Y G R+  
Sbjct: 401 LADTYANATSDVLIAKLDHTEND--VRGVVIEGYPTIVLYPGGKK--SESVVYQGSRSLD 456

Query: 238 DIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPL 274
            +  +       +V    + +   E   +EA  D  L
Sbjct: 457 SLFDFIKENGHFDVDGKALYEEAQEKAAEEADADAEL 493

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  150 bits (379), Expect = 3e-40
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 9/150 (6%)

Query: 129 KSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL-EG 187
           +         AVV+L   +F + +  S D+ L EFFAPWCGHCKN+ P + KAA  L E 
Sbjct: 5   QQEAVAPEDSAVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK 63

Query: 188 KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
            + L  +D T +Q +  E NI G+P++K F       +++ +Y G RT++ IV + + + 
Sbjct: 64  NITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDV--NNSIDYEGPRTAEAIVQFMIKQ- 120

Query: 248 TENVPPPEIKQIVSEATFKEACEDHPLCIV 277
                 P +  +     +          IV
Sbjct: 121 ----SQPAVAVVADLPAYLANETFVTPVIV 146

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  108 bits (269), Expect = 2e-25
 Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 15  YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV---VKVGA 71
            S V +L   N D+ V    +  +V YYAPWCGHC+     Y +LA         V +  
Sbjct: 357 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAK 416

Query: 72  VNADEEKSLSSSHGVTGFPTVKIFS--DKRNPTPYQGARTADAIIDVALEAIRQKVKGGK 129
           ++  E         + G+PT+ ++    K     YQG+R+ D++ D   E     V G  
Sbjct: 417 LDHTEND--VRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKA 474

Query: 130 SGGRKGSSKAVVELTDSNFEK 150
                    A     D+    
Sbjct: 475 LYEEAQEKAAEEADADAELAD 495

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  185 bits (471), Expect = 2e-57
 Identities = 72/136 (52%), Positives = 96/136 (70%), Gaps = 8/136 (5%)

Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL----EG 187
           G  GSS  V+ELTD +F+K V +S+D+W+VEF+APWCGHCKNLEP W  AASE+    +G
Sbjct: 1   GSSGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKG 60

Query: 188 KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
           KVKL AVDATV+Q +A  + IRG+PTIK F  G        +Y+GGRT  DIV+ AL+ +
Sbjct: 61  KVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGES----PVDYDGGRTRSDIVSRALDLF 116

Query: 248 TENVPPPEIKQIVSEA 263
           ++N PPPE+ +    +
Sbjct: 117 SDNAPPPELLESGPSS 132

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  146 bits (371), Expect = 7e-43
 Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 4/120 (3%)

Query: 11  LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK----GV 66
              S  DVI+LT  +FD  V+ S++VW+VE+YAPWCGHC++ + E+   A+ +K    G 
Sbjct: 2   SSGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGK 61

Query: 67  VKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVK 126
           VK+ AV+A   + L+S +G+ GFPT+KIF    +P  Y G RT   I+  AL+       
Sbjct: 62  VKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAP 121

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score = 70.1 bits (172), Expect = 9e-15
 Identities = 19/40 (47%), Positives = 31/40 (77%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           +FD  V+ S++VW+VE+YAPWCGHC++ + E+   A+ +K
Sbjct: 16  SFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVK 55

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score =  188 bits (479), Expect = 1e-56
 Identities = 70/295 (23%), Positives = 108/295 (36%), Gaps = 49/295 (16%)

Query: 9   HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK 68
           H  Y S   + +LT  +FD  +  ++   +VE+YAPWCGHC+     + K A  L GVV+
Sbjct: 10  HNFYDSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQ 69

Query: 69  VGAVNAD--EEKSLSSSHGVTGFPTVKIF-----------------SDKRNPTPYQGART 109
           V AVN D  + K+L + + V GFPT+ +F                         Y GART
Sbjct: 70  VAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGART 129

Query: 110 ADAIIDVALEAIRQKVKGGKSGG------RKGSSKAVVELTDSNFEKLVYNS---DDIWL 160
              I+D +L  IR  VK            RK    +VV  +  +    VY S   D +  
Sbjct: 130 LAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLGK 189

Query: 161 VEFFAPWCGHCKNL---EPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
            +F++      K L    P +EK     +   K+        +             +  F
Sbjct: 190 FDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDK-----------SKLVVF 238

Query: 218 SPGSRSASDAQEYNGGR-TSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACED 271
                      EY G      DI  +  + ++     P        + +    + 
Sbjct: 239 DADK---DKFWEYEGNSINKNDISKFLRDTFS---ITPNEGPFSRRSEYIAYLKT 287

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score =  171 bits (434), Expect = 4e-50
 Identities = 62/259 (23%), Positives = 107/259 (41%), Gaps = 38/259 (14%)

Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV- 194
           S   + ELT  +F+K ++N++   LVEF+APWCGHCK L   + KAA  L+G V++ AV 
Sbjct: 15  SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVN 74

Query: 195 -DATVHQRIAGEFNIRGYPTIKFFSPGSRSASD-------------AQEYNGGRTSQDIV 240
            D   ++ +  ++++ G+PT+  F P     S               + Y+G RT   IV
Sbjct: 75  CDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIV 134

Query: 241 TWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQK 300
            ++L++         +K+ V   T        P   V +       Q      Y  I   
Sbjct: 135 DFSLSRI-----RSYVKKFVRIDTLGSLLRKSPKLSVVL----FSKQDKISPVYKSIALD 185

Query: 301 LGDKYK-------------QKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKY 347
              K+                   +  +  + +   + + E        + V +A K K+
Sbjct: 186 WLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKF 245

Query: 348 SLLKGP-FSYDGINEFLRD 365
              +G   + + I++FLRD
Sbjct: 246 WEYEGNSINKNDISKFLRD 264

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 70.9 bits (173), Expect = 7e-14
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           +FD  +  ++   +VE+YAPWCGHC+     + K A  L 
Sbjct: 26  SFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLD 65

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score =  189 bits (482), Expect = 2e-56
 Identities = 57/376 (15%), Positives = 124/376 (32%), Gaps = 51/376 (13%)

Query: 12  YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV----- 66
           Y     V+ LT  NF   + K D   +  YY       +  + ++      L+ V     
Sbjct: 7   YDGKDRVVSLTEKNFKQVLKKYD--VLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLE 64

Query: 67  ---VKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQ 123
              +    V+A +E  L+   G     ++ +         + G   AD +++  L+ I  
Sbjct: 65  HKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGD-RTIEFDGEFAADVLVEFLLDLIED 123

Query: 124 KVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAAS 183
            V+              +  +    +      D I L+ FF             +E+AA 
Sbjct: 124 PVE--------------IINSKLEVQAFERIEDQIKLIGFFK---SEESEYYKAFEEAAE 166

Query: 184 ELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA 243
             +  +K     AT  + +A + +++    + F+ P           +   T +++V + 
Sbjct: 167 HFQPYIKFF---ATFDKGVAKKLSLKM-NEVDFYEPFMDEPIAI--PDKPYTEEELVEFV 220

Query: 244 LNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGD 303
                     P ++++  E  F+   +D     +       +        +LEIL+++  
Sbjct: 221 KEHQR-----PTLRRLRPEDMFETWEDDLNGIHIVA---FAERSDPDGYEFLEILKQVAR 272

Query: 304 KYKQK-VWGWIWSEAVAQPDLENVLEI---GGFGYPAMAVLNA-----KKMKYSLLKGPF 354
                     +W +    P L    E         P + V+N        M+        
Sbjct: 273 DNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLP 332

Query: 355 SYDGINEFLRDLSYGR 370
           + + + +++ D+  G+
Sbjct: 333 TAEELEDWIEDVLSGK 348

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 8/64 (12%)

Query: 396 ELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
             P  +  D     +  L   E NF   + K D   +  YY       +  + ++     
Sbjct: 3   NFPTYDGKD----RVVSL--TEKNFKQVLKKYD--VLCLYYHESVSSDKVAQKQFQLKEI 54

Query: 456 ALKV 459
            L++
Sbjct: 55  VLEL 58

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  186 bits (473), Expect = 5e-55
 Identities = 49/243 (20%), Positives = 90/243 (37%), Gaps = 16/243 (6%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
           VI+ T            +  I+ +              +   A + KG +    +++D  
Sbjct: 119 VIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHT 178

Query: 78  --KSLSSSHGVTG--FPTVKIF---SDKRNPTPYQGARTADAIIDVALEAIRQKVK---G 127
             + +    G+     P V++     +     P     TA+ I +     +  K+K    
Sbjct: 179 DNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLM 238

Query: 128 GKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG 187
            +        + V  L   NFE + ++      VEF+APWCGHCK L P W+K     + 
Sbjct: 239 SQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD 298

Query: 188 --KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245
              + +  +D+T ++       +  +PT+KFF   +       +YNG RT      +  +
Sbjct: 299 HENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASAD--RTVIDYNGERTLDGFKKFLES 354

Query: 246 KYT 248
              
Sbjct: 355 GGQ 357

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  111 bits (278), Expect = 3e-27
 Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 2/106 (1%)

Query: 12  YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
                 V  L   NF+D      +   VE+YAPWCGHC+     + KL    K    +  
Sbjct: 245 DWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVI 304

Query: 72  VNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIID 115
              D   +   +  V  FPT+K F  S  R    Y G RT D    
Sbjct: 305 AKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKK 350

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 92.8 bits (230), Expect = 6e-21
 Identities = 55/330 (16%), Positives = 104/330 (31%), Gaps = 48/330 (14%)

Query: 133 RKGSSKAVVELTDS-NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL 191
           +   S+    L D    E LV  S ++ ++ FF             + +AA  ++     
Sbjct: 12  QGPGSEFATTLPDGAAAESLV-ESSEVAVIGFFKDVESDSA---KQFLQAAEAIDDIP-- 65

Query: 192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENV 251
                T +  +  ++ +     + F             + G  T ++++ +  +      
Sbjct: 66  --FGITSNSDVFSKYQLDKDGVVLFKKFDEGRN----NFEGEVTKENLLDFIKHNQL--- 116

Query: 252 PPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV-W 310
             P + +   +   K    +    I+  LP       S  +  L   +   + +K K+ +
Sbjct: 117 --PLVIEFTEQTAPKIFGGEIKTHILLFLPK----SVSDYDGKLSNFKTAAESFKGKILF 170

Query: 311 GWIWSEAVAQPDLENVLEIGGFGYPAMAV--LNAKKMKYSLLKGPFSYDGINEFLRDLSY 368
            +I S+      +     +     PA+ +  L  +  KY       + + I EF      
Sbjct: 171 IFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLE 230

Query: 369 GRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSD 428
           G+                              ED D   V          NF+D      
Sbjct: 231 GKI-------------------KPHLMSQELPEDWDKQPV----KVLVGKNFEDVAFDEK 267

Query: 429 EVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           +   VE+YAPWCGHC+     + KL    K
Sbjct: 268 KNVFVEFYAPWCGHCKQLAPIWDKLGETYK 297

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 15/225 (6%), Positives = 44/225 (19%), Gaps = 61/225 (27%)

Query: 234 RTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNN 293
             S  +                   +   A  +   E   + ++       D +S     
Sbjct: 2   HHSSGLEVLFQGP-----GSEFATTLPDGAAAESLVESSEVAVIGFFK---DVESDSAKQ 53

Query: 294 YLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGP 353
           +L+  + + D                     +V          + +        +  +G 
Sbjct: 54  FLQAAEAI-DDIP-----------FGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGE 101

Query: 354 FSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDL 413
            + + + +F++       +  P+      Q                              
Sbjct: 102 VTKENLLDFIKH------NQLPLVIEFTEQ------------------------------ 125

Query: 414 PKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
                          +  I+ +              +   A + K
Sbjct: 126 -----TAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK 165

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  176 bits (447), Expect = 4e-54
 Identities = 58/121 (47%), Positives = 76/121 (62%), Gaps = 3/121 (2%)

Query: 126 KGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL 185
             G   G   SS  V+ELT SNF + V  SD +WLVEF+APWCGHC+ L P W+KAA+ L
Sbjct: 5   SSGAVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATAL 64

Query: 186 EGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN 245
           +  VK+GAV+A  HQ + G++ ++G+PTIK F        D   Y GGRT + IV  AL+
Sbjct: 65  KDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPED---YQGGRTGEAIVDAALS 121

Query: 246 K 246
            
Sbjct: 122 A 122

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  160 bits (406), Expect = 5e-48
 Identities = 70/128 (54%), Positives = 89/128 (69%), Gaps = 5/128 (3%)

Query: 6   ASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG 65
            +V  LY S  DVI+LT SNF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K ATALK 
Sbjct: 7   GAVSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD 66

Query: 66  VVKVGAVNADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQK 124
           VVKVGAVNAD+ +SL   +GV GFPT+KIF ++K  P  YQG RT +AI+D    A    
Sbjct: 67  VVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVD----AALSA 122

Query: 125 VKGGKSGG 132
           ++ G S G
Sbjct: 123 LRSGPSSG 130

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           NF+ +VI+SD +W+VE+YAPWCGHCQ    E+ K ATALK
Sbjct: 26  NFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK 65

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  179 bits (455), Expect = 3e-52
 Identities = 58/375 (15%), Positives = 130/375 (34%), Gaps = 49/375 (13%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKD------EYMKLATALK-GVVK 68
             VI +   N+ + V K  EV  + Y+ P      S +            A  L+   V 
Sbjct: 13  DRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVG 71

Query: 69  VGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGG 128
            G V+++++ +++   G+T   ++ +F +      Y G  +AD +++  L+ +   V+  
Sbjct: 72  FGLVDSEKDAAVAKKLGLTEEDSIYVFKED-EVIEYDGEFSADTLVEFLLDVLEDPVE-- 128

Query: 129 KSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK 188
                       +   +   +      D+I L+ +F             +++AA E    
Sbjct: 129 ------------LIEGERELQAFENIEDEIKLIGYFK---NKDSEHYKAFKEAAEEFHPY 173

Query: 189 VKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYT 248
           +      AT   ++A +  ++    I F+             +   + ++IV +      
Sbjct: 174 IPFF---ATFDSKVAKKLTLK-LNEIDFYEAFMEEPVTI--PDKPNSEEEIVNFVEEHRR 227

Query: 249 ENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQK 308
                  ++++  E+ ++   +D     +       +        +LEIL+ +       
Sbjct: 228 -----STLRKLKPESMYETWEDDMDGIHIVA---FAEEADPDGYEFLEILKSVAQDNTDN 279

Query: 309 V-WGWIWSEAVAQPDLENVLEIG---GFGYPAMAVLNA-----KKMKYSLLKGPFSYDGI 359
                IW +    P L    E         P + V+N        M+    +   S + +
Sbjct: 280 PDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEEL 339

Query: 360 NEFLRDLSYGRGHTA 374
            ++L D+  G  +T 
Sbjct: 340 EDWLEDVLEGEINTE 354

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 400 EEDIDLSDVDLED--LPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKD------EYM 451
           EE +D  + D  D  +  +  N+ + V K  EV  + Y+ P      S +          
Sbjct: 1   EEGLDFPEYDGVDRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILE 59

Query: 452 KLATALK 458
             A  L+
Sbjct: 60  LAAQVLE 66

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score =  170 bits (432), Expect = 6e-52
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
            +A ++LT   F + V      W+V+F+APWCG C+N  P +E  A  ++GKV+ G VD 
Sbjct: 2   PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDC 61

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPP 253
             + +   +  I+ YP++K +       S  +E    R ++ I    +    E +  
Sbjct: 62  QAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAAL-IYGKLETLQS 117

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score =  142 bits (359), Expect = 4e-41
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 4/119 (3%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
              I LT   F++KV++    W+V++YAPWCG CQ+F  E+  LA  +KG V+ G V+  
Sbjct: 3   QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQ 62

Query: 76  EEKSLSSSHGVTGFPTVKIFSD----KRNPTPYQGARTADAIIDVALEAIRQKVKGGKS 130
                    G+  +P+VK++      K        +R A  I  +    +       K 
Sbjct: 63  AYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKR 121

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 67.4 bits (165), Expect = 6e-14
 Identities = 18/40 (45%), Positives = 28/40 (70%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
            F++KV++    W+V++YAPWCG CQ+F  E+  LA  +K
Sbjct: 12  TFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK 51

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  166 bits (423), Expect = 2e-50
 Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 16/146 (10%)

Query: 128 GKSGGRKGS------SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKA 181
           G SG              V  L D NF+  V    D  L+EF+APWCGHCK   P +EK 
Sbjct: 1   GSSGSSGDDDLEVKEENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKI 59

Query: 182 ASELEG---KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQD 238
           AS L+     + +  +DAT    +A +F++ GYPTIK    G      A +Y+G RT ++
Sbjct: 60  ASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKG-----QAVDYDGSRTQEE 114

Query: 239 IVTWALNKYTENV-PPPEIKQIVSEA 263
           IV         +  PPPE+    S  
Sbjct: 115 IVAKVREVSQPDWTPPPEVTSGPSSG 140

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  133 bits (337), Expect = 9e-38
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 5/103 (4%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAV 72
           + V  L   NFD+  +   +  ++E+YAPWCGHC+ F  EY K+A+ LK     + V  +
Sbjct: 17  NGVWVLNDGNFDN-FVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKI 75

Query: 73  NADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
           +A     L+S   V+G+PT+KI         Y G+RT + I+ 
Sbjct: 76  DATSASMLASKFDVSGYPTIKILKKG-QAVDYDGSRTQEEIVA 117

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 392 GKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYM 451
           G  G    ++     +  +  L    F   D  +   +  ++E+YAPWCGHC+ F  EY 
Sbjct: 1   GSSGSSGDDDLEVKEENGVWVLNDGNF---DNFVADKDTVLLEFYAPWCGHCKQFAPEYE 57

Query: 452 KLATALK 458
           K+A+ LK
Sbjct: 58  KIASTLK 64

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  166 bits (422), Expect = 3e-50
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 9/125 (7%)

Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVK 190
           G  GSS  V  +TD N+ +L+   +  W++EF+APWC  C+NL+P WE  A   E  +V 
Sbjct: 1   GSSGSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVN 57

Query: 191 LGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTEN 250
           +  VD T    ++G F I   PTI     G       + Y G RT +D + +  +K  ++
Sbjct: 58  IAKVDVTEQPGLSGRFIINALPTIYHCKDGEF-----RRYQGPRTKKDFINFISDKEWKS 112

Query: 251 VPPPE 255
           + P  
Sbjct: 113 IEPVS 117

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  131 bits (331), Expect = 5e-37
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 12  YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVG 70
             S  +V  +T  N+ + +   +  W++E+YAPWC  CQ+ + E+   A   + + V + 
Sbjct: 3   SGSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIA 59

Query: 71  AVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKS 130
            V+  E+  LS    +   PT+    D      YQG RT    I+   +   + ++   S
Sbjct: 60  KVDVTEQPGLSGRFIINALPTIYHCKDG-EFRRYQGPRTKKDFINFISDKEWKSIEPVSS 118

Query: 131 GGRKGSS 137
                SS
Sbjct: 119 WFSGPSS 125

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           N+ + +   +  W++E+YAPWC  CQ+ + E+   A   +
Sbjct: 16  NWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGE 52

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  161 bits (409), Expect = 1e-48
 Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 9/113 (7%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL---EGKVKLGA 193
              V+ LT++NF+  +  ++ I  ++F+APWCGHCK L P WE+ + +       VK+  
Sbjct: 4   GSTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAE 61

Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
           VD T  + I  ++++RGYPT+  F  G +      E++GGR    +  + L++
Sbjct: 62  VDCTAERNICSKYSVRGYPTLLLFRGGKK----VSEHSGGRDLDSLHRFVLSQ 110

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  137 bits (346), Expect = 2e-39
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 5/110 (4%)

Query: 13  PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK---GVVKV 69
           P  S V+ LT +NFDD +  ++ +  +++YAPWCGHC++    + +L+         VK+
Sbjct: 2   PLGSTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKI 59

Query: 70  GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALE 119
             V+   E+++ S + V G+PT+ +F   +  + + G R  D++    L 
Sbjct: 60  AEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           NFDD +  ++ +  +++YAPWCGHC++    + +L+    
Sbjct: 14  NFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEF 51

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  161 bits (410), Expect = 1e-48
 Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 6/114 (5%)

Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLG 192
               V+ L  SNF + +  +    LVEF+APWCGHCK L P + KAA +L+    +++L 
Sbjct: 5   EEDHVLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLA 63

Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
            VDAT    +A ++ +RGYPTIKFF  G    +  +EY  GR + DIV W   +
Sbjct: 64  KVDATEESDLAQQYGVRGYPTIKFFRNGDT--ASPKEYTAGREADDIVNWLKKR 115

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  135 bits (343), Expect = 6e-39
 Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 6/105 (5%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAV 72
             V+ L  SNF +  + + +  +VE+YAPWCGHC++   EY K A  LK     +++  V
Sbjct: 7   DHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65

Query: 73  NADEEKSLSSSHGVTGFPTVKIFS--DKRNPTPYQGARTADAIID 115
           +A EE  L+  +GV G+PT+K F   D  +P  Y   R AD I++
Sbjct: 66  DATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVN 110

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 9/63 (14%)

Query: 396 ELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLAT 455
           + P+EED       +  L K  F    + + + +  +VE+YAPWCGHC++   EY K A 
Sbjct: 1   DAPEEED------HVLVLRKSNF---AEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAG 51

Query: 456 ALK 458
            LK
Sbjct: 52  KLK 54

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score =  168 bits (426), Expect = 7e-47
 Identities = 41/309 (13%), Positives = 89/309 (28%), Gaps = 18/309 (5%)

Query: 6   ASVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG 65
           + +  LY S   +  L   +    V+ S   W VE++A WCGH  +F   + +LA  +K 
Sbjct: 2   SHMSVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKD 61

Query: 66  ---VVKVGAVNADEE--KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEA 120
               + +  ++  EE   ++     + GFPTV+ F              A A +      
Sbjct: 62  WRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMR 121

Query: 121 IRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLV---EFFAPWCGHCKNLEPH 177
           +   ++         +   +     ++ +     +   +L    E    + G    L+  
Sbjct: 122 LIDALE-SHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDLS 180

Query: 178 WEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
              A                    +  +F +  +P+          +             
Sbjct: 181 QYHA--------VAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYT 232

Query: 238 DIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEI 297
             +   L   T + PP     + ++       +      + +           R    + 
Sbjct: 233 SYLRG-LPGLTRDAPPTTATPVTADKIAPTVWKFADRSKIYMADLESALHYILRVEVGKF 291

Query: 298 LQKLGDKYK 306
               G +  
Sbjct: 292 SVLEGQRLV 300

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score =  162 bits (411), Expect = 1e-44
 Identities = 52/265 (19%), Positives = 92/265 (34%), Gaps = 26/265 (9%)

Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLG 192
           SS  +  L   +    V  S   W VEFFA WCGH     P W++ A++++     + L 
Sbjct: 10  SSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLA 69

Query: 193 AVDAT--VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL------ 244
            +D     +  +  EFNI G+PT++FF   +++ S A     G   Q +    +      
Sbjct: 70  VLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESH 129

Query: 245 -NKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGD 303
            + +    PP E  ++     F    +   L +V       +     R   L++ Q    
Sbjct: 130 RDTWPPACPPLEPAKLNDIDGFFTRNKADYLALV----FEREDSYLGREVTLDLSQYHAV 185

Query: 304 KYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFL 363
             ++          V   + + V + G   +P+  +L        +     S      +L
Sbjct: 186 AVRR----------VLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYL 235

Query: 364 RDLSYGRGHTAPVKGAALPQINQVD 388
           R L        P     +       
Sbjct: 236 RGLPGLTRDAPPTTATPVTADKIAP 260

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 73.4 bits (179), Expect = 4e-14
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           +    V+ S   W VE++A WCGH  +F   + +LA  +K
Sbjct: 21  SVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVK 60

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  150 bits (380), Expect = 4e-44
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KV 189
           G  GSS  V  +    F+ +V +     L+EF+APWCGHCK LEP +     + +G   +
Sbjct: 1   GSSGSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDL 60

Query: 190 KLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTE 249
            +  +DAT +     ++ + G+PTI F   G +  +  +   G R  + +  +     T+
Sbjct: 61  VIAKMDATANDITNDQYKVEGFPTIYFAPSGDKK-NPIKFEGGNRDLEHLSKFIDEHATK 119

Query: 250 NVPPPE 255
                E
Sbjct: 120 RSRTKE 125

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  124 bits (312), Expect = 3e-34
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 5/121 (4%)

Query: 11  LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV--VK 68
              S   V  +    FD  V+   +  ++E+YAPWCGHC+  +  Y  L    KG   + 
Sbjct: 2   SSGSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLV 61

Query: 69  VGAVNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQ-GARTADAIIDVALEAIRQKV 125
           +  ++A      +  + V GFPT+      DK+NP  ++ G R  + +     E   ++ 
Sbjct: 62  IAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRS 121

Query: 126 K 126
           +
Sbjct: 122 R 122

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 67.4 bits (165), Expect = 7e-14
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
            FD  V+   +  ++E+YAPWCGHC+  +  Y  L    K
Sbjct: 16  TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYK 55

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  149 bits (379), Expect = 5e-44
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-----KVKLGA 193
            VVELTD  F+ +V + +    V ++ PW  H       W+  +                
Sbjct: 16  RVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAAR 75

Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
           +D   +  +     + G+PT+++++   +   +  EY+G R    + ++    
Sbjct: 76  IDGEKYPDVIERMRVSGFPTMRYYTRIDK--QEPFEYSGQRYLSLVDSFVFQN 126

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  126 bits (318), Expect = 4e-35
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-----VKVG 70
           S V++LT   FD  V+  ++   V YY PW  H  +    +  L+ +             
Sbjct: 15  SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAA 74

Query: 71  AVNADEEKSLSSSHGVTGFPTVKIFS--DKRNPTPYQGARTADAIID 115
            ++ ++   +     V+GFPT++ ++  DK+ P  Y G R    +  
Sbjct: 75  RIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDS 121

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
            FD  V+  ++   V YY PW  H  +    +  L+ +  
Sbjct: 24  TFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQS 63

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score =  144 bits (365), Expect = 1e-40
 Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 19/220 (8%)

Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-------K 188
            +K  + L    F K++  S  + LV+F   +    K     +++ A            +
Sbjct: 3   HTKGALPLDTVTFYKVIPKSKFV-LVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAE 59

Query: 189 VKLGAVDATVHQRIAGEFNI--RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
           V +      ++  ++ ++ +    YP    F  G     +   Y G      I  W   +
Sbjct: 60  VGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDF--ENPVPYTGAVKVGAIQRWLKGQ 117

Query: 247 YTENVPPPEIKQI--VSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDK 304
                 P  +     ++    + +  +    ++      L      +  + E   K+  K
Sbjct: 118 GVYLGMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGK 177

Query: 305 YKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKK 344
              +   +  SE      +  ++E           L    
Sbjct: 178 ILDQGEDFPASEMT---RIARLIEKNKMSDGKKEELQKSL 214

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score =  105 bits (263), Expect = 3e-26
 Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 25/161 (15%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-----VVKVG 70
              + L T  F  KVI   +  +V++   +    +  +DE+ +LA          V +VG
Sbjct: 5   KGALPLDTVTFY-KVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVG 61

Query: 71  AVNADE--EKSLSSSHGV--TGFPTVKIF--SDKRNPTPYQGARTADAIIDVALEAIRQK 124
             +  +     LS  + +    +P   +F   D  NP PY GA    AI           
Sbjct: 62  ISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWL------- 114

Query: 125 VKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFA 165
               K  G        + + D+   + +  S          
Sbjct: 115 ----KGQGVYLGMPGCLPVYDALAGEFIRASGVEARQALLK 151

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 416 DEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           D   F  KVI   +  +V++   +    +  +DE+ +LA    
Sbjct: 11  DTVTFY-KVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSA 50

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  137 bits (348), Expect = 1e-39
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 10/125 (8%)

Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAA-----SELE 186
           G  GS   V  +   N+ ++V +     L+EF+APWCGHCK L P +E+       SE +
Sbjct: 1   GPLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFK 60

Query: 187 GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
            +V +  VDAT +        I+G+PTIK +  G++       Y+G RT +D++ +    
Sbjct: 61  DRVVIAKVDATANDV---PDEIQGFPTIKLYPAGAK--GQPVTYSGSRTVEDLIKFIAEN 115

Query: 247 YTENV 251
                
Sbjct: 116 GKYKA 120

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  114 bits (287), Expect = 7e-31
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 12  YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV----- 66
             S   V  +   N+++ V+   +  ++E+YAPWCGHC++   +Y +L            
Sbjct: 3   LGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDR 62

Query: 67  VKVGAVNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIID 115
           V +  V+A           + GFPT+K++    K  P  Y G+RT + +I 
Sbjct: 63  VVIAKVDATANDVP---DEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIK 110

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score = 63.9 bits (156), Expect = 8e-13
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           N+++ V+   +  ++E+YAPWCGHC++   +Y +L     
Sbjct: 16  NYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYA 55

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score =  142 bits (358), Expect = 1e-37
 Identities = 37/264 (14%), Positives = 87/264 (32%), Gaps = 28/264 (10%)

Query: 120 AIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHW 178
           ++ Q   G    G      +VV+L+  +F ++   +    W+V F+   CG C+     +
Sbjct: 5   SVAQVATGSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTF 64

Query: 179 EKAASELEGK--------VKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEY 230
            K A  L+ +            AV+      +  +++I   P + FF P     S+  E 
Sbjct: 65  SKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSN--EE 122

Query: 231 NGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSC 290
            G  + + +     +   + +              +     H +   ++    +D     
Sbjct: 123 CGTSSLEHVAFENSHLEVDELESE----------VRRLVNKHMVVDDSLKERCIDMHFKL 172

Query: 291 RNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVL------EIGGFGYPAMAVLNAKK 344
             +  E++++      +    ++ +  +   D+          ++   G      L A +
Sbjct: 173 YTSKEELVKRSVSSTDE-SGRFVETTELYATDIAGAFFSAMHYDVSLVGTEPRERLTALE 231

Query: 345 MKYSLLKGPFSYDGINEFLRDLSY 368
               L+K      G +  +  L  
Sbjct: 232 DFVLLVKDSLPSIGADGVVSALES 255

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score =  118 bits (295), Expect = 4e-29
 Identities = 27/180 (15%), Positives = 51/180 (28%), Gaps = 20/180 (11%)

Query: 11  LYPSYSDVIKLTTSNFDDKVIKSDEV-WIVEYYAPWCGHCQSFKDEYMKLATALKG---- 65
           L+   S V+ L+  +F      +    WIV +Y   CG C+ +   + K A  LK     
Sbjct: 18  LFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGK 77

Query: 66  ----VVKVGAVNADEEKSLSSSHGVTGFPTVKIF--SDKRNPTPYQGARTADAIIDVALE 119
               +    AVN   E  L   + +   P +  F   D        G  + + +      
Sbjct: 78  DALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSH 137

Query: 120 AIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWE 179
               +++                L +   +            + +       K      +
Sbjct: 138 LEVDELESEVRRLVNKHMVVDDSLKERCID---------MHFKLYTSKEELVKRSVSSTD 188

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 63.5 bits (153), Expect = 5e-11
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 419 NFDDKVIKSDEV-WIVEYYAPWCGHCQSFKDEYMKLATALKVY 460
           +F      +    WIV +Y   CG C+ +   + K A  LKV 
Sbjct: 32  DFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVE 74

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score =  134 bits (337), Expect = 9e-37
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 26/225 (11%)

Query: 28  DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-----VKVGAVNADEEKSLSS 82
            K  K      +   A  C  CQ+ ++   +    +        +K+   +    K  + 
Sbjct: 16  QKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETE 75

Query: 83  SHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVE 142
            +GV   PT+ I  DK     Y G         +         +  +             
Sbjct: 76  KYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQ------------- 122

Query: 143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           L++   E L      I +  F    CG+C +        A      +    +DA+ +Q +
Sbjct: 123 LSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALA-NDYITSKVIDASENQDL 181

Query: 203 AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
           A +F + G P I              E+ G +     + + +  Y
Sbjct: 182 AEQFQVVGVPKIVI-------NKGVAEFVGAQPENAFLGYIMAVY 219

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 66.6 bits (162), Expect = 1e-12
 Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 4/112 (3%)

Query: 20  KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS 79
           +L+    +   +    + I  +    CG+C S        A      +    ++A E + 
Sbjct: 122 QLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFA-LANDYITSKVIDASENQD 180

Query: 80  LSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSG 131
           L+    V G P + I    +    + GA+  +A +   +    +  +  +  
Sbjct: 181 LAEQFQVVGVPKIVI---NKGVAEFVGAQPENAFLGYIMAVYEKLKREKEQA 229

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 93.2 bits (232), Expect = 7e-23
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 127 GGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE 186
               G  K     VVE  +  F + V  +    LV+FFAPWCG C+ + P  E+ A +  
Sbjct: 22  VPVCGACKTPLPWVVEADEKGFAQEVAGAPLT-LVDFFAPWCGPCRLVSPILEELARDHA 80

Query: 187 GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
           G++K+  V+   H  +A  + +R  PT+  F  G
Sbjct: 81  GRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRG 114

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
             V++     F  +V  +    +V+++APWCG C+       +LA    G +KV  VN D
Sbjct: 33  PWVVEADEKGFAQEVAGAPLT-LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVD 91

Query: 76  EEKSLSSSHGVTGFPTVKIFSD 97
           E   L++ +GV   PT+ +F  
Sbjct: 92  EHPGLAARYGVRSVPTLVLFRR 113

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
            F  +V  +    +V+++APWCG C
Sbjct: 42  GFAQEVAGAPLT-LVDFFAPWCGPC 65

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 93.3 bits (232), Expect = 9e-23
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 116 VALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLE 175
           +  E I    K G+ G      + V+  T    +K +   D   +++F+APWCG C++  
Sbjct: 17  LPEERIDDGAKCGRCGHSLFDGE-VINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFA 74

Query: 176 PHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
           P + + A+E  GKV+   V+      ++  F IR  PTI  +  G
Sbjct: 75  PIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNG 119

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 74.8 bits (184), Expect = 2e-16
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
           VI  T    D  +++ D   +++++APWCG C+SF   + + A    G V+   VN + E
Sbjct: 40  VINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAE 98

Query: 78  KSLSSSHGVTGFPTVKIFSD 97
            +LS+   +   PT+ ++ +
Sbjct: 99  PALSTRFRIRSIPTIMLYRN 118

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
             D  +++ D   +++++APWCG C+SF   + + A    
Sbjct: 47  TLDK-LLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERA 85

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 92.1 bits (229), Expect = 2e-22
 Identities = 24/85 (28%), Positives = 46/85 (54%)

Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD 195
           +  +++E  D  + + V +S    +V F++P C +CK +EP++E+ A E       G ++
Sbjct: 4   NGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRIN 63

Query: 196 ATVHQRIAGEFNIRGYPTIKFFSPG 220
              +   A ++ ++G PT KFF  G
Sbjct: 64  IATNPWTAEKYGVQGTPTFKFFCHG 88

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 73.2 bits (180), Expect = 7e-16
 Identities = 19/87 (21%), Positives = 38/87 (43%)

Query: 11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG 70
          +  + S +I+     +  +V  S +  +V +Y+P C +C++ +  + + A         G
Sbjct: 1  MSLNGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFG 60

Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSD 97
           +N       +  +GV G PT K F  
Sbjct: 61 RINIATNPWTAEKYGVQGTPTFKFFCH 87

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
            +  +V  S +  +V +Y+P C +C
Sbjct: 15  TWSQQVEDSKKPVVVMFYSPACPYC 39

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 92.2 bits (229), Expect = 2e-22
 Identities = 28/82 (34%), Positives = 40/82 (48%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
             V   D          D   LV+F+APWCG C+ + P ++ AA+ L G+V+L  +D   
Sbjct: 47  GKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQA 106

Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
           H  +AG   I+G P    F  G
Sbjct: 107 HPAVAGRHRIQGIPAFILFHKG 128

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 78.3 bits (193), Expect = 2e-17
 Identities = 17/89 (19%), Positives = 37/89 (41%)

Query: 9   HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK 68
            C     +  +         +  + D   +V+++APWCG C+    ++   A  L G V+
Sbjct: 39  ICGAGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVR 98

Query: 69  VGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
           +  ++     +++  H + G P   +F  
Sbjct: 99  LAKIDTQAHPAVAGRHRIQGIPAFILFHK 127

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSF 446
               +  + D   +V+++APWCG C+  
Sbjct: 55  AILARAERDDLPLLVDFWAPWCGPCRQM 82

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 89.0 bits (221), Expect = 2e-21
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
             ++   SN    V   + + ++ FFA WC  C       +K       ++ L  VD   
Sbjct: 25  PRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDK 84

Query: 199 HQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
           ++ +A +F+++  PTI      +  A          +S D++   + K+
Sbjct: 85  NESLARKFSVKSLPTIILLKNKTMLARKD----HFVSSNDLIAL-IKKH 128

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 70.1 bits (172), Expect = 6e-15
 Identities = 18/80 (22%), Positives = 35/80 (43%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
            ++   SN  + V   + V ++ ++A WC  C     E  KL       + +  V+ D+ 
Sbjct: 26  RLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKN 85

Query: 78  KSLSSSHGVTGFPTVKIFSD 97
           +SL+    V   PT+ +  +
Sbjct: 86  ESLARKFSVKSLPTIILLKN 105

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
           N  + V   + V ++ ++A WC  C
Sbjct: 33  NIINGVNMKNTVIVLYFFAKWCQAC 57

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 87.4 bits (217), Expect = 4e-21
 Identities = 21/82 (25%), Positives = 37/82 (45%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
           ++ +L  + FE+L+Y+     LV F    C  C+ + P  E+     E       VD   
Sbjct: 5   SLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE 64

Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
            + +   F+++G P I +F  G
Sbjct: 65  EKTLFQRFSLKGVPQILYFKDG 86

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
          + KL T+ F+  +    +  +V +    C  CQ      +E   L    +       V+ 
Sbjct: 6  LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEE---LRLNYEESFGFYYVDV 62

Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
          +EEK+L     + G P +  F D
Sbjct: 63 EEEKTLFQRFSLKGVPQILYFKD 85

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
            F+  +    +  +V +    C  CQ
Sbjct: 13  TFEQLIYDEGKACLVMFSRKNCHVCQ 38

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 86.9 bits (216), Expect = 5e-21
 Identities = 36/82 (43%), Positives = 51/82 (62%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
           +V+E+TD NFE+ V  SD   LV+F+APWCG C+ + P  E+ A E EGKVK+  V+   
Sbjct: 2   SVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDE 61

Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
           +   A ++ IR  PT+  F  G
Sbjct: 62  NPNTAAQYGIRSIPTLLLFKNG 83

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 6/83 (7%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
          VI++T  NF+ +V+KSD+  +V+++APWCG C+      +E   LA   +G VKV  VN 
Sbjct: 3  VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEE---LAKEYEGKVKVVKVNV 59

Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
          DE  + ++ +G+   PT+ +F +
Sbjct: 60 DENPNTAAQYGIRSIPTLLLFKN 82

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 13/25 (52%), Positives = 21/25 (84%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
           NF+ +V+KSD+  +V+++APWCG C
Sbjct: 10  NFEQEVLKSDKPVLVDFWAPWCGPC 34

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 86.5 bits (215), Expect = 5e-21
 Identities = 29/81 (35%), Positives = 49/81 (60%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
           V ++ DS++++ V  S+   +V+F+APWCG CK + P  ++ A E  GK+ +  ++    
Sbjct: 2   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 61

Query: 200 QRIAGEFNIRGYPTIKFFSPG 220
             IA ++NIR  PT+ FF  G
Sbjct: 62  PGIATQYNIRSIPTVLFFKNG 82

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 69.6 bits (171), Expect = 6e-15
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVN 73
          +V  +  S++ + V++S+   +V+++APWCG C+      DE   LA    G + V  +N
Sbjct: 1  EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDE---LAKEYSGKIAVYKLN 57

Query: 74 ADEEKSLSSSHGVTGFPTVKIFSD 97
           DE   +++ + +   PTV  F +
Sbjct: 58 TDEAPGIATQYNIRSIPTVLFFKN 81

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 9/25 (36%), Positives = 19/25 (76%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
           ++ + V++S+   +V+++APWCG C
Sbjct: 9   SWKEFVLESEVPVMVDFWAPWCGPC 33

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 91.8 bits (228), Expect = 6e-21
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHWEKAASELEGKVK 190
           G   S + +V + +SN ++++  S     L  F++    HC  L P  E  A++  G+  
Sbjct: 1   GSHMSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFI 60

Query: 191 LGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
           L  +D    Q IA +F +R  PT+  F  G
Sbjct: 61  LAKLDCDAEQMIAAQFGLRAIPTVYLFQNG 90

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 74.8 bits (184), Expect = 3e-15
 Identities = 19/102 (18%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 16  SDVIKLTTSNFDDKVIKSDEV-WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA 74
            +++ +  SN    + +S     +  +++    HC         LA    G   +  ++ 
Sbjct: 7   ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDC 66

Query: 75  DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDV 116
           D E+ +++  G+   PTV +F + +    +QG +  +AI  +
Sbjct: 67  DAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRAL 108

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 87.0 bits (216), Expect = 6e-21
 Identities = 22/84 (26%), Positives = 42/84 (50%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
           SK V+ +TD+ FE  V  ++   LV F+A WCG C+ + P    AA+    ++K+  ++ 
Sbjct: 6   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 65

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
             +     ++ + G P ++     
Sbjct: 66  DPNPTTVKKYKVEGVPALRLVKGE 89

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
          VI +T + F+ +V+K+++  +V ++A WCG CQ      +     A      +KV  +  
Sbjct: 9  VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINL---AANTYSDRLKVVKLEI 65

Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
          D   +    + V G P +++   
Sbjct: 66 DPNPTTVKKYKVEGVPALRLVKG 88

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
            F+ +V+K+++  +V ++A WCG C
Sbjct: 16  EFESEVLKAEQPVLVYFWASWCGPC 40

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 86.6 bits (215), Expect = 7e-21
 Identities = 23/84 (27%), Positives = 45/84 (53%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
           +  +  +TD +FE+ V  +D   LV+F+A WCG C+ + P  E  A+E   K+++  ++ 
Sbjct: 4   AGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNI 63

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
             +   A ++ +   PT+  +  G
Sbjct: 64  DENPGTAAKYGVMSIPTLNVYQGG 87

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 19/80 (23%), Positives = 42/80 (52%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
          +  +T  +F+  V+K+D+  +V+++A WCG C+        +A      +++  +N DE 
Sbjct: 7  LKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDEN 66

Query: 78 KSLSSSHGVTGFPTVKIFSD 97
             ++ +GV   PT+ ++  
Sbjct: 67 PGTAAKYGVMSIPTLNVYQG 86

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 10/25 (40%), Positives = 19/25 (76%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
           +F+  V+K+D+  +V+++A WCG C
Sbjct: 14  SFEQDVLKNDKPVLVDFWAAWCGPC 38

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 86.5 bits (215), Expect = 8e-21
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
           S  ++ LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
             +   A ++ IRG PT+  F  G
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNG 84

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
          +I LT  +FD  V+K+D   +V+++A WCG C+      DE   +A   +G + V  +N 
Sbjct: 4  IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLNI 60

Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
          D+    +  +G+ G PT+ +F +
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKN 83

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
           +FD  V+K+D   +V+++A WCG C
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPC 35

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 87.1 bits (216), Expect = 8e-21
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
           S  ++ LTD +F+  V  +D   LV+F+A WCG  K + P  ++ A E +GK+ +  ++ 
Sbjct: 21  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNI 80

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
             +   A ++ IRG PT+  F  G
Sbjct: 81  DQNPGTAPKYGIRGIPTLLLFKNG 104

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
           +I LT  +FD  V+K+D   +V+++A WCG  +      DE   +A   +G + V  +N 
Sbjct: 24  IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDE---IADEYQGKLTVAKLNI 80

Query: 75  DEEKSLSSSHGVTGFPTVKIFSD 97
           D+    +  +G+ G PT+ +F +
Sbjct: 81  DQNPGTAPKYGIRGIPTLLLFKN 103

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
           +FD  V+K+D   +V+++A WCG  
Sbjct: 31  SFDTDVLKADGAILVDFWAEWCGPA 55

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 89.5 bits (222), Expect = 9e-21
 Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 152 VYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGY 211
             NS ++W V F++P C HC +L P W + A E++G +++GAV+    + +     +  Y
Sbjct: 110 AVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSY 169

Query: 212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENV 251
           P++  F  G  +     +YNG R+ + +V +A+      V
Sbjct: 170 PSLFIFRSGMAA----VKYNGDRSKESLVAFAMQHVRSTV 205

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 88.0 bits (218), Expect = 3e-20
 Identities = 28/99 (28%), Positives = 53/99 (53%)

Query: 28  DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVT 87
           D  + S E+W V +Y+P C HC      + + A  + G++++GAVN  +++ L    GV 
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVN 167

Query: 88  GFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVK 126
            +P++ IF        Y G R+ ++++  A++ +R  V 
Sbjct: 168 SYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVT 206

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 422 DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           D  + S E+W V +Y+P C HC      + + A  + 
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD 144

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 24/84 (28%), Positives = 43/84 (51%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
           S+  + ++DS+F++ V  +  + LV+F+A WCG CK + P   +   E  GKV +  V+ 
Sbjct: 1   SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNI 60

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
             +      + +R  PT+     G
Sbjct: 61  DDNPETPNAYQVRSIPTLMLVRDG 84

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 21/80 (26%), Positives = 41/80 (51%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
           + ++ S+FD  V+K+  + +V+++A WCG C+       ++     G V V  VN D+ 
Sbjct: 4  TLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDN 63

Query: 78 KSLSSSHGVTGFPTVKIFSD 97
              +++ V   PT+ +  D
Sbjct: 64 PETPNAYQVRSIPTLMLVRD 83

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
           +FD  V+K+  + +V+++A WCG C+
Sbjct: 11  SFDQDVLKASGLVLVDFWAEWCGPCK 36

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
               + D  F+ +V  S    LV+F+APWCG C+ + P  ++ A E + K+K   ++   
Sbjct: 2   EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61

Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
              +A E+ IR  PTI  F  G
Sbjct: 62  SPNVASEYGIRSIPTIMVFKGG 83

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
             +    F + V++S    +V+++APWCG C+      DE   +A   K  +K   +N 
Sbjct: 3  AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDE---IAGEYKDKLKCVKLNT 59

Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
          DE  +++S +G+   PT+ +F  
Sbjct: 60 DESPNVASEYGIRSIPTIMVFKG 82

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
            F + V++S    +V+++APWCG C
Sbjct: 10  TFKNVVLESSVPVLVDFWAPWCGPC 34

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 134 KGSSKAVVELTD-SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLG 192
                    + D  +F+  V NS+   +V+F A WCG CK L P  EK  ++  GKV + 
Sbjct: 8   HHHGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMA 67

Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPG 220
            VD   H  +A E+ +   PT+     G
Sbjct: 68  KVDIDDHTDLAIEYEVSAVPTVLAMKNG 95

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 16 SDVIKLTT-SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA 74
          S    +    +F D+V+ S+   +V+++A WCG C+       K+     G V +  V+ 
Sbjct: 12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDI 71

Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
          D+   L+  + V+  PTV    +
Sbjct: 72 DDHTDLAIEYEVSAVPTVLAMKN 94

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 416 DEFNFDDKVIKSDEVWIVEYYAPWCGHC 443
           D  +F D+V+ S+   +V+++A WCG C
Sbjct: 19  DGPDFQDRVVNSETPVVVDFHAQWCGPC 46

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 84.7 bits (210), Expect = 3e-20
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
               + LT+ NF++ V  ++ + LV+ +A WC  C   EP ++K A + +GK   G ++ 
Sbjct: 3   EDVTLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNV 61

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
             +Q+IA ++++   PT   F  G
Sbjct: 62  DENQKIADKYSVLNIPTTLIFVNG 85

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 67.8 bits (166), Expect = 3e-14
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
           + LT  NFD+ VI+++++ +V+ +A WC  C  ++  Y K+A   KG    G +N DE 
Sbjct: 6  TLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDEN 64

Query: 78 KSLSSSHGVTGFPTVKIFSD 97
          + ++  + V   PT  IF +
Sbjct: 65 QKIADKYSVLNIPTTLIFVN 84

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 85.3 bits (211), Expect = 4e-20
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 8/97 (8%)

Query: 132 GRKGSSKAVVELTDSNFEKLVYNSDDI-WLVEFFAPWCGHCKNLEPHWEKAASELEG-KV 189
           G  GSS  +    D   ++ +     + W+VEFFA W   C++  P +   + +     +
Sbjct: 1   GSSGSSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGL 60

Query: 190 KLGAVDATVHQRIAGEFNI------RGYPTIKFFSPG 220
             G VD   +  ++  + +      +  PT+  F  G
Sbjct: 61  NFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGG 97

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 64.9 bits (158), Expect = 7e-13
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 16 SDVIK-LTTSNFDDKVIKSDEV-WIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAV 72
          S  IK       D+++ +   V WIVE++A W   CQSF   Y  L+       +  G V
Sbjct: 6  SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKV 65

Query: 73 NADEEKSLSSSHGVT------GFPTVKIFSD 97
          +      +S+ + V+        PT+ +F  
Sbjct: 66 DVGRYTDVSTRYKVSTSPLTKQLPTLILFQG 96

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 419 NFDDKVIKSDEV-WIVEYYAPWCGHCQSF 446
             D+++ +   V WIVE++A W   CQSF
Sbjct: 16  TIDEELERDKRVTWIVEFFANWSNDCQSF 44

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 87.2 bits (216), Expect = 6e-20
 Identities = 29/84 (34%), Positives = 48/84 (57%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
           S  ++ LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++ 
Sbjct: 11  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 70

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
             +   A ++ IRG PT+  F  G
Sbjct: 71  DQNPGTAPKYGIRGIPTLLLFKNG 94

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 68.3 bits (167), Expect = 2e-13
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
          +I LT  +FD  V+K+D   +V+++A WCG C+      DE   +A   +G + V  +N 
Sbjct: 14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLNI 70

Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
          D+    +  +G+ G PT+ +F +
Sbjct: 71 DQNPGTAPKYGIRGIPTLLLFKN 93

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
           +FD  V+K+D   +V+++A WCG C
Sbjct: 21  SFDTDVLKADGAILVDFWAEWCGPC 45

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 84.0 bits (208), Expect = 1e-19
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 11/98 (11%)

Query: 134 KGSSKAVVELTDSNFEKLVYNSDDIW-----------LVEFFAPWCGHCKNLEPHWEKAA 182
              +  V+ LT + F   VYN +              +V+F+A WCG CK + P  ++ A
Sbjct: 5   TEGNGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELA 64

Query: 183 SELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
            E +G++ +  VD    Q +AG F IR  P+I F    
Sbjct: 65  KEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPME 102

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 1/114 (0%)

Query: 14  SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
            +   +     N ++   + D+  IV++YA WCG C+       +LA    G + +  V+
Sbjct: 18  EFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVD 77

Query: 74  ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKG 127
            ++E+ L+ + G+   P++     +  P   QGA    +    A++    K +G
Sbjct: 78  TEKEQELAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKK-AIDEFLLKKEG 130

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 41.3 bits (97), Expect = 9e-05
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 403 IDLSDVD-LEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHC 443
           I L+  + L  +   E N ++   + D+  IV++YA WCG C
Sbjct: 12  IHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPC 53

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
             A +++TD++F   V +S+   LV+F+A WCG CK + P  E+ A+E    + +  +D 
Sbjct: 11  KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDV 70

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPG 220
             +   A  F +   PT+  F  G
Sbjct: 71  DTNPETARNFQVVSIPTLILFKDG 94

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAV 72
          S  IK+T ++F   V+ S++  +V+++A WCG C+      +E   +AT     + V  +
Sbjct: 12 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEE---IATERATDLTVAKL 68

Query: 73 NADEEKSLSSSHGVTGFPTVKIFSD 97
          + D     + +  V   PT+ +F D
Sbjct: 69 DVDTNPETARNFQVVSIPTLILFKD 93

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHC 443
           +F   V+ S++  +V+++A WCG C
Sbjct: 21  SFATDVLSSNKPVLVDFWATWCGPC 45

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 86.7 bits (214), Expect = 1e-19
 Identities = 43/222 (19%), Positives = 72/222 (32%), Gaps = 23/222 (10%)

Query: 31  IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL-KGVVKVGAVNADEEKSLSSSHGVTGF 89
           + +    IV      C +C   K    +L+    K   ++   +  E K L+  + +   
Sbjct: 20  MVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRA 79

Query: 90  PTVKIFSD-KRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNF 148
           P   I  D K     Y G           LE I               S+    L D   
Sbjct: 80  PATTITQDGKDFGVRYFGLPAGHEFAAF-LEDIVD------------VSREETNLMDETK 126

Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASE----LEGKVKLGAVDATVHQRIAG 204
           + +     D+ ++ F  P C +C        K A E     +GK+    V+A  +   A 
Sbjct: 127 QAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWAD 186

Query: 205 EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK 246
           ++N+   P I     G     D  E+ G    +  +   L+ 
Sbjct: 187 QYNVMAVPKIVIQVNG----EDRVEFEGAYPEKMFLEKLLSA 224

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 61.3 bits (148), Expect = 6e-11
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 19  IKLTTSNFDDKVIK-----SDEVWIVEYYAPWCGHCQSFKDEYMKLAT----ALKGVVKV 69
           +    +N  D+  +       +V I+ +  P C +C        K A     A KG +  
Sbjct: 114 VSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILG 173

Query: 70  GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI 121
             V A E    +  + V   P + I  +  +   ++GA      ++  L A+
Sbjct: 174 DMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 81.6 bits (202), Expect = 3e-19
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
            +E+TD NF++       + LV+F+A WC  C+ + P  E+ A E EGK+ +  +D   +
Sbjct: 3   PIEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDEN 61

Query: 200 QRIAGEFNIRGYPTIKFFSPG 220
            + A  + +   PT+  F  G
Sbjct: 62  PKTAMRYRVMSIPTVILFKDG 82

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 66.6 bits (163), Expect = 8e-14
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
          +  I++T  NFD+  +    + +V+++A WC  C+       ++A   +G + V  ++ D
Sbjct: 1  AKPIEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVD 59

Query: 76 EEKSLSSSHGVTGFPTVKIFSD 97
          E    +  + V   PTV +F D
Sbjct: 60 ENPKTAMRYRVMSIPTVILFKD 81

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 82.6 bits (204), Expect = 5e-19
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 129 KSGGRKGSSKAVVELTDSNFEKLVYNSDDIW-----------LVEFFAPWCGHCKNLEPH 177
            +   +      + LT + F K + + ++             +V+F+A WCG CK + P 
Sbjct: 13  DTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPI 72

Query: 178 WEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
            E+ + E  GK+ +  V+      +A +F I+  PTI F    
Sbjct: 73  LEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMK 115

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 65.3 bits (159), Expect = 5e-13
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 11/120 (9%)

Query: 16  SDVIKLTTSNFDDKVI-----------KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 64
           S  I LT + F  K+              D+  IV++YA WCG C+       +L+    
Sbjct: 22  SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA 81

Query: 65  GVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQK 124
           G + +  VN D+E  L+   G+   PT+     K  P    GA + + +     + + ++
Sbjct: 82  GKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVLLKQ 141

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 81.2 bits (201), Expect = 5e-19
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
            A+ ++T               +V F    C HCKN+E   +K  +     V + +VD+ 
Sbjct: 2   SAIRDITTEAGMAHF-EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQ-VAISSVDSE 59

Query: 198 VHQRIAGEFNIRGYPTIKFFSPG 220
               +  E      PT+ F   G
Sbjct: 60  ARPELMKELGFERVPTLVFIRDG 82

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 66.6 bits (163), Expect = 7e-14
 Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 19  IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
           I+  T+       +     IV ++   C HC++ +    K        V + +V+++   
Sbjct: 4   IRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQ-VAISSVDSEARP 62

Query: 79  SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKG 127
            L    G    PT+    D +    + G           L+A+   +  
Sbjct: 63  ELMKELGFERVPTLVFIRDGKVAKVFSGIMNPR-----ELQALYASIHH 106

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 418 FNFDDKVIKSDEVWIVEYYAPWCGHCQSF 446
                   +     IV ++   C HC++ 
Sbjct: 9   TEAGMAHFEGLSDAIVFFHKNLCPHCKNM 37

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 80.4 bits (199), Expect = 8e-19
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
           A + LTD+NF++     D   LV+F+A WCG C+ + P  E+ A     KV +  ++   
Sbjct: 1   ATMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE 59

Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
           +     +F I   PT+  F  G
Sbjct: 60  NPETTSQFGIMSIPTLILFKGG 81

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
           + LT +NF    I+ D   +V+++A WCG C+       + A A    V V  +N DE 
Sbjct: 2  TMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60

Query: 78 KSLSSSHGVTGFPTVKIFSD 97
             +S  G+   PT+ +F  
Sbjct: 61 PETTSQFGIMSIPTLILFKG 80

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 80.5 bits (199), Expect = 1e-18
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
           A+V++TD++F+  V +     LV+F+A  CG CK + P  E+ A++ EGK  +  +D   
Sbjct: 4   AIVKVTDADFDSKVESGV--QLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE 61

Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
           +   A ++ +   PT+  F  G
Sbjct: 62  NPSTAAKYEVMSIPTLIVFKDG 83

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 60.8 bits (148), Expect = 8e-12
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
          ++K+T ++FD KV     V +V+++A  CG C+       +LA   +G   +  ++ DE 
Sbjct: 5  IVKVTDADFDSKVESG--VQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDEN 62

Query: 78 KSLSSSHGVTGFPTVKIFSD 97
           S ++ + V   PT+ +F D
Sbjct: 63 PSTAAKYEVMSIPTLIVFKD 82

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
           A+V+ TD +F      S+ + L +F+APWCG  K + P  E+   E+  K+K+  +D   
Sbjct: 2   AIVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE 59

Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
           +Q  AG++ +   PT+     G
Sbjct: 60  NQETAGKYGVMSIPTLLVLKDG 81

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK---DEYMKLATALKGVVKVGAVNA 74
          ++K T  +F  +   S+ V + +++APWCG  +      +E   L   +   +K+  ++ 
Sbjct: 3  IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEE---LDQEMGDKLKIVKIDV 57

Query: 75 DEEKSLSSSHGVTGFPTVKIFSD 97
          DE +  +  +GV   PT+ +  D
Sbjct: 58 DENQETAGKYGVMSIPTLLVLKD 80

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 78.9 bits (195), Expect = 5e-18
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT 197
           +V  ++  +  K V   D + +++F+A WCG CK + P +EK +    G KV    VD  
Sbjct: 16  SVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD 75

Query: 198 VHQRIAGEFNIRGYPTIKFFSPG 220
              +IA E  IR  PT  FF  G
Sbjct: 76  EQSQIAQEVGIRAMPTFVFFKNG 98

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE 76
          V  +++ +   +V   D+V +++++A WCG C+     + K++    G  V    V+ DE
Sbjct: 17 VQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE 76

Query: 77 EKSLSSSHGVTGFPTVKIFSD 97
          +  ++   G+   PT   F +
Sbjct: 77 QSQIAQEVGIRAMPTFVFFKN 97

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQ 444
           +   +V   D+V +++++A WCG C+
Sbjct: 24  DQFKQVTGGDKVVVIDFWATWCGPCK 49

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 77.4 bits (191), Expect = 1e-17
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
           V+ L   NF+     S +I +V+F+A WC  C  L P  E+ A +   +V  G +++  +
Sbjct: 1   VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDEN 58

Query: 200 QRIAGEFNIRGYPTIKFFSPG 220
             IA  + +   PT+ FF  G
Sbjct: 59  PDIAARYGVMSLPTVIFFKDG 79

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 63.5 bits (155), Expect = 8e-13
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQ-------SFKDEYMKLATALKGVVKVG 70
          VI L + NFD   + S E+ +V+++A WC  C           ++Y +        V  G
Sbjct: 1  VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ--------VGFG 51

Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSD 97
           +N+DE   +++ +GV   PTV  F D
Sbjct: 52 KLNSDENPDIAARYGVMSLPTVIFFKD 78

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV- 198
           ++ +T   F +L+    D  ++  ++  C HC    P   +A+ E++  + +    + + 
Sbjct: 18  LIYITPEEFRQLL--QGDA-ILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIG 74

Query: 199 ------HQRIAGEFNIRGYPTIKFFSPG 220
                  +    +  + G PT+ F+  G
Sbjct: 75  ERELSAARLEMNKAGVEGTPTLVFYKEG 102

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK-------DEYMKLATALKGVVK 68
             +I +T   F  ++++ D +  +  Y+  C HC            E             
Sbjct: 16  GRLIYITPEEFR-QLLQGDAI--LAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSL 72

Query: 69  VGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
           +G       +   +  GV G PT+  + +
Sbjct: 73  IGERELSAARLEMNKAGVEGTPTLVFYKE 101

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 77.4 bits (191), Expect = 1e-17
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 128 GKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG 187
           G       S  ++ +LT+    + +   +D  +++F+A WCG CK ++PH  K       
Sbjct: 2   GHHHHHHSSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP- 60

Query: 188 KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
            V+    D      IA E  +   PT      G
Sbjct: 61  DVRFVKCDVDESPDIAKECEVTAMPTFVLGKDG 93

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 66.6 bits (163), Expect = 8e-14
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAV 72
           SY+ + KLT       +IK ++  ++++YA WCG C+  +    KL  A    V+    
Sbjct: 9  SSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKC 67

Query: 73 NADEEKSLSSSHGVTGFPTVKIFSD 97
          + DE   ++    VT  PT  +  D
Sbjct: 68 DVDESPDIAKECEVTAMPTFVLGKD 92

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 77.9 bits (192), Expect = 1e-17
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 14/98 (14%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCG--------------HCKNLEPHWEKAA 182
           S  ++ LTD +F+  V  +D   LV+F+A WCG               CK + P  ++ A
Sbjct: 2   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61

Query: 183 SELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
            E +GK+ +  ++   +   A ++ IRG PT+  F  G
Sbjct: 62  DEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 14/94 (14%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMK--------------LATAL 63
          +I LT  +FD  V+K+D   +V+++A WCG  +   D                  +A   
Sbjct: 5  IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64

Query: 64 KGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
          +G + V  +N D+    +  +G+ G PT+ +F +
Sbjct: 65 QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 98

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 79.7 bits (196), Expect = 4e-17
 Identities = 20/194 (10%), Positives = 56/194 (28%), Gaps = 27/194 (13%)

Query: 131 GGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL---EG 187
                +    V+L + +FEK V       +V+F              +   +        
Sbjct: 9   HHGSVTCTGCVDLDELSFEKTVERFPYS-VVKFDIASP--YGEKHEAFTAFSKSAHKATK 65

Query: 188 KVKLGAVDATVH-----QRIAGEFNI--RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIV 240
            + +  V    +     + +   + +  + +P+I  F   +         +   T  ++ 
Sbjct: 66  DLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQ-LPSHVDVTLDNLK 124

Query: 241 TWALNKYTENVPP-----PEIKQIVSEATFKEACEDHPLCIV-----AVLPHILDCQSSC 290
            + ++  T           E  +++    +    +   L ++              Q   
Sbjct: 125 AF-VSANTPLYIGRDGCIKEFNEVLKN--YANIPDAEQLKLIEKLQAKQEQLTDPEQQQN 181

Query: 291 RNNYLEILQKLGDK 304
              YL  ++K+ + 
Sbjct: 182 ARAYLIYMRKIHEV 195

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 16/113 (14%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG------VVKV 69
           +  + L   +F+ K ++     +V++        +   + +   + +         +  V
Sbjct: 16  TGCVDLDELSFE-KTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATV 72

Query: 70  GAVNADEE--KSLSSSHGVT--GFPTVKIF---SDKRNPTPYQGARTADAIID 115
           G  +  E   K+L   + V    FP++ +F   +D+    P     T D +  
Sbjct: 73  GVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKA 125

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 75.1 bits (185), Expect = 8e-17
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 139 AVVELTDSNFEKLVYNSDDIW-LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
            V E+    F  +V  + D   +++ F  WCG  K + P +EK A E    + L  +D  
Sbjct: 6   KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFL-KLDCN 64

Query: 198 V-HQRIAGEFNIRGYPTIKFF 217
             ++ +A E  IR  PT K  
Sbjct: 65  QENKTLAKELGIRVVPTFKIL 85

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 16 SDVIKLTTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA 74
            V ++    F   V  + D+  +++ +  WCG  ++   +Y KLA     V+ +  ++ 
Sbjct: 5  GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFL-KLDC 63

Query: 75 DEE-KSLSSSHGVTGFPTVKIFSD 97
          ++E K+L+   G+   PT KI  +
Sbjct: 64 NQENKTLAKELGIRVVPTFKILKE 87

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 75.1 bits (185), Expect = 1e-16
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
              T       +  +  + LV+FFA WCG C+ L       A      V    VD   + 
Sbjct: 8   FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNG 66

Query: 201 RIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ 237
             A  + +   P + F            ++ G   S+
Sbjct: 67  NAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSR 103

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 19  IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
              T     +++ ++  + +V+++A WCG CQ        +A A    V    V+ D+  
Sbjct: 8   FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNG 66

Query: 79  SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVK 126
           + + ++GV+  P +     + N       +T D  +   +  I+  ++
Sbjct: 67  NAADAYGVSSIPALFFVKKEGNE-----IKTLDQFVGADVSRIKADIE 109

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 75.1 bits (185), Expect = 1e-16
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 139 AVVELTDSNFEKLVYNSDDIW-LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
            V E+    F  +V  + D   +++ F  WCG CK + P +EK A E    + L  +D  
Sbjct: 19  KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL-KLDCN 77

Query: 198 VH-QRIAGEFNIRGYPTIKFF 217
              + +A E  IR  PT K  
Sbjct: 78  QENKTLAKELGIRVVPTFKIL 98

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 16  SDVIKLTTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA 74
             V ++    F   V  + D+  +++ +  WCG C++   +Y KLA     V+ +  ++ 
Sbjct: 18  GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL-KLDC 76

Query: 75  DEE-KSLSSSHGVTGFPTVKIFSD 97
           ++E K+L+   G+   PT KI  +
Sbjct: 77  NQENKTLAKELGIRVVPTFKILKE 100

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
           +VV++      + + + D + +  F A WCG CK +E   EK A E    VK   VDA  
Sbjct: 20  SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADN 78

Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
           +  I  +  +   PT      G
Sbjct: 79  NSEIVSKCRVLQLPTFIIARSG 100

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
           Y  V+ + +      ++  D + +  + A WCG C++ +    K+A      VK   V+
Sbjct: 17 RYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT-VKFAKVD 75

Query: 74 ADEEKSLSSSHGVTGFPTVKIFSD 97
          AD    + S   V   PT  I   
Sbjct: 76 ADNNSEIVSKCRVLQLPTFIIARS 99

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 74.5 bits (183), Expect = 3e-16
 Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 2/86 (2%)

Query: 137 SKAVVELTDSNFEKLVYNSDD-IWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAV 194
           ++    +  S  +  +    D + L+           +      +   E      ++   
Sbjct: 16  TRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVA 75

Query: 195 DATVHQRIAGEFNIRGYPTIKFFSPG 220
           D    + I   FN+R +P    F+ G
Sbjct: 76  DLEQSEAIGDRFNVRRFPATLVFTDG 101

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 2/97 (2%)

Query: 21  LTTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEK 78
           +  S  DD + +  D V ++                  +L         +V   + ++ +
Sbjct: 22  VEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSE 81

Query: 79  SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
           ++     V  FP   +F+D +      G      ++ 
Sbjct: 82  AIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLT 118

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 2/86 (2%)

Query: 134 KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193
           +G  +   +  +              ++ F    C +C  ++      + E EGK  +  
Sbjct: 4   EGIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYY 63

Query: 194 --VDATVHQRIAGEFNIRGYPTIKFF 217
             ++   +  +A +++    PT  F 
Sbjct: 64  ARLEEEKNIDLAYKYDANIVPTTVFL 89

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 19  IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
            +      + +  K     I+ +    C +C   + E   ++   +G   +     +EEK
Sbjct: 11  FQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEK 70

Query: 79  S--LSSSHGVTGFPTVKIFSDKRNPT-PYQGARTADAIIDV 116
           +  L+  +     PT      + N    +QG    + I  +
Sbjct: 71  NIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETI 111

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 4/33 (12%), Positives = 10/33 (30%)

Query: 412 DLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQ 444
           +        + +  K     I+ +    C +C 
Sbjct: 10  NFQSINVVENLEEAKEGIPTIIMFKTDTCPYCV 42

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 2/77 (2%)

Query: 144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA 203
           T       +     + L+      CG C  +              V+   +     Q IA
Sbjct: 7   TIEELATYI-EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIA 64

Query: 204 GEFNIRGYPTIKFFSPG 220
           G + +   PT+  F  G
Sbjct: 65  GRYAVFTGPTVLLFYNG 81

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
          +    T       I+  ++ ++      CG C     +   +       V+   +   + 
Sbjct: 2  MNTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNY-VEKIEILLQDM 60

Query: 78 KSLSSSHGVTGFPTVKIFSD 97
          + ++  + V   PTV +F +
Sbjct: 61 QEIAGRYAVFTGPTVLLFYN 80

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 144 TDSNFEKLVYNSDDIW-LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
             ++ +  +  +     +++FFA WCG CK + P   + +++    V +  VD    + I
Sbjct: 7   DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDI 66

Query: 203 AGEFNIRGYPTIKFF 217
           A E+NI   PT  F 
Sbjct: 67  AMEYNISSMPTFVFL 81

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 57.7 bits (140), Expect = 9e-11
 Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 18 VIKLTT-SNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
          V ++   ++ D ++ K S ++ +++++A WCG C+    + ++L+T     V V  V+ D
Sbjct: 2  VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD 61

Query: 76 EEKSLSSSHGVTGFPTVKIFSD 97
          E + ++  + ++  PT     +
Sbjct: 62 ECEDIAMEYNISSMPTFVFLKN 83

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 68.8 bits (169), Expect = 6e-15
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
           +  F +P C HC   +   E+ A+E+   V++  ++   + + A E+ I   PTI     
Sbjct: 6   IELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGD 65

Query: 220 G 220
            
Sbjct: 66  V 66

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
          I  + +P C HC + K    ++A  +   V+V  +N  E    +  +G+   PT+ I  D
Sbjct: 6  IELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGD 65

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 144 TDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
           + + ++  +          +V+F A WCG CK + P +E  +++  GKV    VD     
Sbjct: 9   SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA 68

Query: 201 RIAGEFNIRGYPTIKFF 217
            +A    I   PT   +
Sbjct: 69  AVAEAAGITAMPTFHVY 85

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 17 DVIKLTT-SNFDDKVIK---SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAV 72
           VI + + + +D ++ K     +  +V++ A WCG C+     +  L+    G V    V
Sbjct: 3  SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62

Query: 73 NADEEKSLSSSHGVTGFPTVKIFSD 97
          + D   +++ + G+T  PT  ++ D
Sbjct: 63 DVDAVAAVAEAAGITAMPTFHVYKD 87

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 134 KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193
                     T S F+  +   D + +V+F+A WCG CK + P  EK + +   +     
Sbjct: 3   HHHHMVTQFKTASEFDSAI-AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYK 60

Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPG 220
           +D      +A +  +   PT+  F  G
Sbjct: 61  LDVDELGDVAQKNEVSAMPTLLLFKNG 87

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
          V +  T++  D  I  D++ +V++YA WCG C+       K +           ++ DE 
Sbjct: 8  VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDEL 66

Query: 78 KSLSSSHGVTGFPTVKIFSD 97
            ++  + V+  PT+ +F +
Sbjct: 67 GDVAQKNEVSAMPTLLLFKN 86

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 68.3 bits (167), Expect = 5e-14
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 130 SGGRKGSSKAVVELTD-SNFEKLV-YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG 187
           +G  + +  AV E+     FE+L+   +  + +V F+APW   C  +     + A EL  
Sbjct: 4   AGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP- 62

Query: 188 KVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
           +V    ++A     ++ ++ I   PT  FF
Sbjct: 63  QVSFVKLEAEGVPEVSEKYEISSVPTFLFF 92

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 9/140 (6%)

Query: 14  SYSDVIKLTT-SNFDDKV-IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
           + + V ++ +   F++ + +K+  + +V ++APW   C    +   +LA  L  V     
Sbjct: 10  AVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVS-FVK 68

Query: 72  VNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSG 131
           + A+    +S  + ++  PT   F + +      GA          L    Q+     S 
Sbjct: 69  LEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAP------ELTKKVQRHASSGSF 122

Query: 132 GRKGSSKAVVELTDSNFEKL 151
                 K   +   S+ +KL
Sbjct: 123 LPSAKVKVDTDPNSSSVDKL 142

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 67.0 bits (164), Expect = 6e-14
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 140 VVELTDS---NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVD 195
           V+E+ D     +       D + ++ F   W   CK L+  +E  ++E     V   ++D
Sbjct: 2   VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSID 61

Query: 196 ATVHQRIAGEFNIRGYPTIKFFSPG 220
           A  +  I+  F I   P       G
Sbjct: 62  ADENSEISELFEISAVPYFIIIHKG 86

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 18 VIKLTTS---NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK-GVVKVGAVN 73
          VI++       +       D++ ++ ++  W   C++ K  +  ++       V   +++
Sbjct: 2  VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSID 61

Query: 74 ADEEKSLSSSHGVTGFPTVKIFSD 97
          ADE   +S    ++  P   I   
Sbjct: 62 ADENSEISELFEISAVPYFIIIHK 85

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 5/40 (12%), Positives = 20/40 (50%)

Query: 415 KDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
           +++F +       D++ ++ ++  W   C++ K  +  ++
Sbjct: 8   QEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAIS 47

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 65.8 bits (161), Expect = 9e-14
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI 214
           +  F +P C +C       ++A  E   K+ +  +D  V +  A E+ +   P I
Sbjct: 5   IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAI 59

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 54.2 bits (131), Expect = 9e-10
 Identities = 9/59 (15%), Positives = 23/59 (38%)

Query: 36 VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI 94
          V I  + +P C +C    +   +        + V  ++   ++  +  +G+   P + I
Sbjct: 3  VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI 61

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 135 GSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV 194
                V  +T       + + +++ +V+FFA WCG CK + P +E+ +     K+    V
Sbjct: 5   HHHHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKV 63

Query: 195 DATVHQRIAGEFNIRGYPTIKFF 217
           D      +  + NI   PT K +
Sbjct: 64  DVDEVSEVTEKENITSMPTFKVY 86

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
          V  +T+    D +I  +E+ IV+++A WCG C+     Y + +     +V    V+ DE 
Sbjct: 10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMV-FIKVDVDEV 68

Query: 78 KSLSSSHGVTGFPTVKIFSD 97
            ++    +T  PT K++ +
Sbjct: 69 SEVTEKENITSMPTFKVYKN 88

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 141 VELTDSNFEKLVYNSDD-IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
           V  T ++ EKL+  +   + +V+FFA WCG C+N+ P  E  A E+  +V+   VD   +
Sbjct: 3   VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQN 61

Query: 200 QRIAGEFNIRGYPTIKFF 217
           +  A ++++   PT  F 
Sbjct: 62  EEAAAKYSVTAMPTFVFI 79

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 22 TTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL 80
          T ++ +  + ++   + +V+++A WCG C++   +   LA  +  V     V+ D+ +  
Sbjct: 6  TAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVE-FAKVDVDQNEEA 64

Query: 81 SSSHGVTGFPTVKIFSD 97
          ++ + VT  PT     D
Sbjct: 65 AAKYSVTAMPTFVFIKD 81

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIW-LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD 195
           S+ +    D + E L+    +   +V+FFA WCG CK + P +++ + +         VD
Sbjct: 13  SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVD 70

Query: 196 ATVHQRIAGEFNIRGYPTIKFFSPG 220
               +  A ++NI   PT      G
Sbjct: 71  VDKLEETARKYNISAMPTFIAIKNG 95

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 14/84 (16%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 16 SDVIKLTT-SNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
          S++I+L    + +  + +  +++ +V+++A WCG C++    + +L+           V+
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD--AIFVKVD 70

Query: 74 ADEEKSLSSSHGVTGFPTVKIFSD 97
           D+ +  +  + ++  PT     +
Sbjct: 71 VDKLEETARKYNISAMPTFIAIKN 94

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
           V+    +FEK    S  + +V+F A WC  CK + P + + A +    V    VD    +
Sbjct: 12  VDTWKEHFEKGK-GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELK 69

Query: 201 RIAGEFNIRGYPTIKFF 217
            +A E+N+   PT  F 
Sbjct: 70  AVAEEWNVEAMPTFIFL 86

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK 78
          +     +F+ K   S ++ +V++ A WC  C+     + +LA     V     V+ DE K
Sbjct: 12 VDTWKEHFE-KGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVT-FLKVDVDELK 69

Query: 79 SLSSSHGVTGFPTVKIFSDKR 99
          +++    V   PT     D +
Sbjct: 70 AVAEEWNVEAMPTFIFLKDGK 90

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 65.2 bits (159), Expect = 4e-13
 Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 136 SSKAVVELTDSNFEKLVYNS---DDIWLVEFFAPWCGHCKNLEP--HWEKAASELEGKVK 190
           +    +   + +F + +  +   D +  V+ F  WCG CK L      +   ++   +  
Sbjct: 4   AQADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHF 63

Query: 191 LGA---VDATVHQRIAGEFNIRGYPTIKFFSPG 220
           +     ++      +  ++ +  YPT+ F +  
Sbjct: 64  VNLKMDMEKGEGVELRKKYGVHAYPTLLFINSS 96

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 13/122 (10%)

Query: 16  SDVIKLTTSNFDDKVIKS---DEVWIVEYYAPWCGHCQ-----SFKDEYMKLATALKGVV 67
           +D I     +F + + ++   D++  V+ +  WCG C+      FKD    +A       
Sbjct: 6   ADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDS--LVADYFNRHF 63

Query: 68  KVGAVNAD--EEKSLSSSHGVTGFPTVKIFSDKRNP-TPYQGARTADAIIDVALEAIRQK 124
               ++ +  E   L   +GV  +PT+   +          GA  A  ++      +  +
Sbjct: 64  VNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESE 123

Query: 125 VK 126
             
Sbjct: 124 GH 125

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 129 KSGGRKGSSKAVVELTDSNF--EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE 186
           +         +V ++       E L    D + +V+F A WCG  K ++P +   + +  
Sbjct: 2   RGSHHHHHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS 61

Query: 187 GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
             V    VD    Q +A E  ++  PT +FF  G
Sbjct: 62  -NVIFLEVDVDDCQDVASECEVKSMPTFQFFKKG 94

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 14  SYSDVIKLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
            +  V ++ +     + + +  D++ +V++ A WCG  +  K  +  L+     V+    
Sbjct: 9   HHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVI-FLE 67

Query: 72  VNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
           V+ D+ + ++S   V   PT + F   +    + GA
Sbjct: 68  VDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGA 103

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 135 GSSKAVVEL-TDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVK 190
               AV+   T   F+  +    ++  + +++F A WCG C+ + P + + A +  G + 
Sbjct: 3   AEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIF 62

Query: 191 LGAVDATVHQRIAGEFNIRGYPTIKFF 217
           L  VD    + +A  +N+   PT  F 
Sbjct: 63  L-KVDVDELKDVAEAYNVEAMPTFLFI 88

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 16 SDVIKLTT-SNFDDKVIK---SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
            VI   T   FD  +     + ++ I+++ A WCG C+     + + A    G +    
Sbjct: 6  GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAI-FLK 64

Query: 72 VNADEEKSLSSSHGVTGFPTVKIFSD 97
          V+ DE K ++ ++ V   PT     D
Sbjct: 65 VDVDELKDVAEAYNVEAMPTFLFIKD 90

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 140 VVELTDSNF--EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
            +EL ++    +      +   +++F A WC  C  ++ +++   +     V L  +D  
Sbjct: 22  YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN--YYYVTLVDIDVD 79

Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG 232
           +H ++  + NI+  PT +F+   +          G
Sbjct: 80  IHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEG 114

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 12  YPSYSDVIKLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV 69
           +   S  I+L  +   ++V  S  +   ++++ A WC  C   K+ +          V +
Sbjct: 16  FQGQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY--VTL 73

Query: 70  GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVK 126
             ++ D    L+  H +   PT + + +               +       I +  +
Sbjct: 74  VDIDVDIHPKLNDQHNIKALPTFEFYFNLN-----NEWVLVHTVEGANQNDIEKAFQ 125

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 144 TDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
               F+  +     +  + +++F A WCG C+ + P + + A +  G V L  VD    +
Sbjct: 21  NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFL-KVDVDELK 79

Query: 201 RIAGEFNIRGYPTIKFF 217
            +A ++N+   PT  F 
Sbjct: 80  EVAEKYNVEAMPTFLFI 96

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 16 SDVIKLTT-SNFDDKVIK---SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
            VI       FD ++ K   + +V I+++ A WCG C+     + + A    G V    
Sbjct: 14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLK 72

Query: 72 VNADEEKSLSSSHGVTGFPTVKIFSD 97
          V+ DE K ++  + V   PT     D
Sbjct: 73 VDVDELKEVAEKYNVEAMPTFLFIKD 98

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 139 AVVEL-TDSNFEKLVYNSDD-IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
            V  + +D +F+  +  +   + +V+F    CG C  + P +   +++   +     VD 
Sbjct: 2   GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDV 60

Query: 197 TVHQRIAGEFNIRGYPTIKFF 217
              Q  A   NI   PT +FF
Sbjct: 61  HQCQGTAATNNISATPTFQFF 81

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 18  VIKLTT-SNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
           V  + +  +F  ++  +   + +V++    CG C      +  ++      V    V+  
Sbjct: 3   VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAV-FLEVDVH 61

Query: 76  EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
           + +  ++++ ++  PT + F +K     YQGA
Sbjct: 62  QCQGTAATNNISATPTFQFFRNKVRIDQYQGA 93

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 63.4 bits (154), Expect = 3e-12
 Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 2/99 (2%)

Query: 20  KLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
           KLT+    D+ IKS  ++V ++ +       C    D   K ++ L  +  +  V+ D+ 
Sbjct: 7   KLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQT 66

Query: 78  KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDV 116
              +    ++  P+   F + ++     G+      +  
Sbjct: 67  AVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGS 105

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 62.7 bits (152), Expect = 4e-12
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD 195
           S K V +   S  EK++       ++ F       C  L+    K +S+L     +  VD
Sbjct: 10  SKKEVDQAIKSTAEKVL-------VLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVD 62

Query: 196 ATVHQRIAGEFNIRGYPTIKFFSPG 220
                     F+I   P+  FF  G
Sbjct: 63  VDQTAVYTQYFDISYIPSTVFFFNG 87

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 140 VVELTDSNF--EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
           V ++       E L    D + +V+F A WCG CK ++P +   + +    V    VD  
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVD 60

Query: 198 VHQRIAGEFNIRGYPTIKFF 217
             Q +A E  ++  PT +FF
Sbjct: 61  DCQDVASESEVKSMPTFQFF 80

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 18  VIKLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
           V ++ +     + + +  D++ +V++ A WCG C+  K  +  L+     V+    V+ D
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVD 60

Query: 76  EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
           + + ++S   V   PT + F   +    + GA
Sbjct: 61  DCQDVASESEVKSMPTFQFFKKGQKVGEFSGA 92

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 62.2 bits (151), Expect = 5e-12
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 140 VVELTDSNFEKLVYNSD-DIW-LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
           + E++ + +   V N++ D+W ++  +      C  +  H    A +   + K       
Sbjct: 12  LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKAIV- 69

Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSAS--DAQEYNGGRTSQDIVTWALNKY 247
                   ++    PTI  +  G          E  G     + + W L++ 
Sbjct: 70  --NSCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 9/87 (10%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 13 PSYSDVIKLTTSNFDDKVIKSDE-VW-IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVG 70
            + ++ +++ + + ++V  +++ +W ++  Y      C         LA       K  
Sbjct: 7  GKFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFV 65

Query: 71 AVNADEEKSLSSSHGVTGFPTVKIFSD 97
              +        +     PT+ ++ +
Sbjct: 66 KAIVNS---CIEHYHDNCLPTIFVYKN 89

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} Length = 250

 Score = 64.8 bits (157), Expect = 5e-12
 Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 20/238 (8%)

Query: 139 AVVELTDS-NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
              E+      ++ + + DD+ ++  F    G        ++ AA+ L    K      T
Sbjct: 7   PSKEILTLKQVQEFLKDGDDVVILGVFQ---GVGDPGYLQYQDAANTLREDYKFHH---T 60

Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE----YNGGRTSQDIVTWALNKYTENVPP 253
               IA    +     +       +S  + +       G   +  I  + +      V  
Sbjct: 61  FSTEIAKFLKVSLGKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGH 120

Query: 254 PEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWI 313
                    +   +     PL +V           +    +   + ++   + +  +   
Sbjct: 121 ------RKTSNDAKRYSKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPEYTF--A 172

Query: 314 WSEAVAQPDLENVLEIGGFGYPAMAVLNAKKM-KYSLLKGPFSYDGINEFLRDLSYGR 370
            ++          L +   G    A +  +   K+++    F  D + EF+     G+
Sbjct: 173 IADEEDYATEVKDLGLSESGGDVNAAILDESGKKFAMEPEEFDSDALREFVMAFKKGK 230

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 140 VVELTDSNFEKLVYNSD-DIW-LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
           + E++ + +   V N++ D+W ++  +      C  +  H    A +   + K       
Sbjct: 5   LREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKAIV- 62

Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSAS--DAQEYNGGRTSQDIVTWALNKY 247
                   ++    PTI  +  G   A      E  G     + + W L + 
Sbjct: 63  --NSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV 112

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 15 YSDVIKLTTSNFDDKVIKSDE-VW-IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAV 72
          + ++ +++ + + ++V  ++E VW I+  Y      C         LA       K    
Sbjct: 2  FGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE-TKFVKA 60

Query: 73 NADEEKSLSSSHGVTGFPTVKIFSD 97
            +        +     PT+ ++ +
Sbjct: 61 IVNS---CIQHYHDNCLPTIFVYKN 82

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 61.2 bits (149), Expect = 9e-12
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 128 GKSGGRKGSSKAVVEL-TDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPHWEKAAS 183
             S      +  V+ + +   +   +     +  + +++F A WCG C+ + P +   A 
Sbjct: 2   AASATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAK 61

Query: 184 ELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
           +    V L  VD    + IA +F++   PT  F 
Sbjct: 62  KFPNAVFL-KVDVDELKPIAEQFSVEAMPTFLFM 94

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 16 SDVIKLTT-SNFDD---KVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
          ++VI + +   +     +   + ++ ++++ A WCG C+     +  LA      V    
Sbjct: 12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAV-FLK 70

Query: 72 VNADEEKSLSSSHGVTGFPTVKIFSD 97
          V+ DE K ++    V   PT     +
Sbjct: 71 VDVDELKPIAEQFSVEAMPTFLFMKE 96

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Length = 243

 Score = 63.3 bits (153), Expect = 2e-11
 Identities = 31/198 (15%), Positives = 58/198 (29%), Gaps = 26/198 (13%)

Query: 43  APWCGHCQSFKDEYMKLA--TALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN 100
              C         + + +       ++K+     + +    S   V   PTV     +  
Sbjct: 39  CETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFLGGE-- 96

Query: 101 PTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWL 160
              + G    + I  + +E I +             S+    L D+  E L      + +
Sbjct: 97  -VRWTGIPAGEEIRAL-VEVIMRL------------SEDESGLEDATKEALKSLKGRVHI 142

Query: 161 VEFFAPWCGHCKNLEPHWEKAASELEG----KVKLGAVDATVHQRIAGEFNIRGYPTI-- 214
                P C +C          A E        +   AV+A  +  IA ++ +   P+I  
Sbjct: 143 ETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI 202

Query: 215 --KFFSPGSRSASDAQEY 230
                  G     D  +Y
Sbjct: 203 NGYLVFVGVPYEEDFLDY 220

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Length = 243

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 15/122 (12%)

Query: 23  TSNFDDKVIK-----SDEVWIVEYYAPWCGHCQSFKDEYMKLA----TALKGVVKVGAVN 73
            S  +D   +        V I     P C +C          A         V+   AV 
Sbjct: 122 ESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVE 181

Query: 74  ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI--RQKVKGGKSG 131
           A E   ++  +GV   P++ I         + G    +  +D    A   R  VKG    
Sbjct: 182 AYENPDIADKYGVMSVPSIAINGYLV----FVGVPYEEDFLDYVKSAAEGRLTVKGPIRA 237

Query: 132 GR 133
           G 
Sbjct: 238 GE 239

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
           VE  +   +K    S  + +V+F A WCG C+ + P +   A +L   V    VD    +
Sbjct: 24  VETWNEQLQK-ANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELK 81

Query: 201 RIAGEFNIRGYPTIKFF 217
            +A ++ I+  PT  F 
Sbjct: 82  SVASDWAIQAMPTFMFL 98

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 16  SDVIKLTT-SNFDD---KVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
             VI   T   +++   K  +S  + +V++ A WCG C+     +  LA  L  V+    
Sbjct: 16  GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL-FLK 74

Query: 72  VNADEEKSLSSSHGVTGFPTVKIFSD 97
           V+ DE KS++S   +   PT     +
Sbjct: 75  VDTDELKSVASDWAIQAMPTFMFLKE 100

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 59.0 bits (143), Expect = 8e-11
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 122 RQKVKGGKSGGRKGSSKAVVEL-TDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPH 177
           R           + +   V  + T   +++ +        I L  F A WCG  + + P+
Sbjct: 8   RNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPY 67

Query: 178 WEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
           + + +      +    +D       +  + I+  PT  F 
Sbjct: 68  YIELSENYP-SLMFLVIDVDELSDFSASWEIKATPTFFFL 106

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 16  SDVIKLTT-SNFD---DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
            +V  +TT   +D    +  +  ++ +  + A WCG  +     Y++L+     ++    
Sbjct: 24  GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLM-FLV 82

Query: 72  VNADEEKSLSSSHGVTGFPTVKIFSDKR 99
           ++ DE    S+S  +   PT     D +
Sbjct: 83  IDVDELSDFSASWEIKATPTFFFLRDGQ 110

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 160 LVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDATV----HQRIAGEFNIRGYP 212
           +++ +A WC  CK  E +     +    L   V L   + T        +    N+ G P
Sbjct: 35  MLDLYADWCVACKEFEKYTFSDPQVQKALADTVLL-QANVTANDAQDVALLKHLNVLGLP 93

Query: 213 TIKFFSP 219
           TI FF  
Sbjct: 94  TILFFDG 100

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 50.2 bits (120), Expect = 7e-08
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 22  TTSNFDDKVIKSDEVWI-VEYYAPWCGHCQSFKDEYMKLA---TALKGVVKVGA---VNA 74
           T    +  ++++    + ++ YA WC  C+ F+           AL   V + A    N 
Sbjct: 18  TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND 77

Query: 75  DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQ---GARTADAIID 115
            ++ +L     V G PT+  F  +    P     G   A+    
Sbjct: 78  AQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSA 121

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} Length = 252

 Score = 57.8 bits (139), Expect = 1e-09
 Identities = 41/240 (17%), Positives = 73/240 (30%), Gaps = 22/240 (9%)

Query: 139 AVVELTDS-NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT 197
           A V L     F+K + +  D  +V FF             + KAAS L    +      T
Sbjct: 7   ASVPLRTEEEFKKFI-SDKDASIVGFFD---DSFSEAHSEFLKAASNLRDNYRFAH---T 59

Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEY---NGGRTSQDIVTWALNKYTENVPPP 254
             + +  E++  G   I F      +  + +         TS  I  +         P  
Sbjct: 60  NVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPH- 118

Query: 255 EIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSC---RNNYLEILQKLGDKYKQKVWG 311
                ++E       +   L I                 RN  + + +K  D   +  + 
Sbjct: 119 -----MTEDNKDL-IQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFA 172

Query: 312 WIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLL-KGPFSYDGINEFLRDLSYGR 370
               +  +    +  LE      P +A+  AK  K+ +  +       +  FL+D   G 
Sbjct: 173 VASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGN 232

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 6e-09
 Identities = 68/509 (13%), Positives = 142/509 (27%), Gaps = 126/509 (24%)

Query: 16  SDVIK--LTTSNFDDKVIKSDEV-------WIVEYYAPWCGHCQSF-----KDEYMKLAT 61
            D+ K  L+    D  ++  D V       W +          Q F     +  Y  L +
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMS 96

Query: 62  ALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI 121
            +K   +     +   +              ++++D +    Y  +R            +
Sbjct: 97  PIKTEQRQ---PSMMTRMYIEQRD-------RLYNDNQVFAKYNVSRLQP------YLKL 140

Query: 122 RQKVKGGKSG------GRKGSSKAVVELTDSNFEKLVYNSDD--IWL--------VEFFA 165
           RQ +   +        G  GS K  V L      K+    D    WL             
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 166 PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYP------------- 212
                   ++P+W   +      +KL          +      + Y              
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 213 TIKFFSPG------SRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATF- 265
               F+        +R        +   T+      +L+ ++  + P E+K ++ +    
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTH----ISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 266 ------KEACEDHPLCIVAVLPHILDCQSSCRNNYLEI------------LQKLGDKYKQ 307
                 +E    +P  + +++   +    +  +N+  +            L  L     +
Sbjct: 314 RPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 308 KVWGWIWSEAVAQPDL---ENVLEI---GGFGYPAMAVLNAKKMKYSLLKG---PFSYDG 358
           K++      +V  P       +L +          M V+N K  KYSL++      +   
Sbjct: 373 KMF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKESTI-S 427

Query: 359 INEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEED------------IDLS 406
           I     +L     +   +  + +   N    +D  D   P  +             I+  
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 407 DVDLEDLPK---DEFNF-DDKVIKSDEVW 431
           +  +        D F F + K+      W
Sbjct: 488 E-RMTLFRMVFLD-FRFLEQKIRHDSTAW 514

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 161 VEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG 220
             + A WC HC++ +  +  A  ++           T   +   E  I  YPT       
Sbjct: 17  TMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII---- 72

Query: 221 SRSASDAQEYNGGRTSQDIVTW 242
                + + Y G R+ + +   
Sbjct: 73  -----NGRTYTGVRSLEALAVA 89

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score = 43.6 bits (102), Expect = 9e-06
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 38  IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD 97
              Y A WC HCQ  K+ +      +  V          +    +  G+T +PT  I   
Sbjct: 16  GTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII--- 72

Query: 98  KRNPTPYQGARTADAI 113
             N   Y G R+ +A+
Sbjct: 73  --NGRTYTGVRSLEAL 86

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 11/111 (9%), Positives = 30/111 (27%), Gaps = 9/111 (8%)

Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL---- 191
           + K +   T    ++ +   +           C +C+          +E +  +      
Sbjct: 10  NIKDLEVTTVVRAQEALDKKETA-TFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSE 68

Query: 192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
                   Q     + I   P     + G  +       +   ++Q+I  +
Sbjct: 69  EPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRC----DSSMSAQEIKDF 115

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 5/106 (4%)

Query: 14  SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVK----V 69
           +  D+   T     +  +   E          C +C+ F      +    K  +      
Sbjct: 10  NIKDLEVTTVVRAQEA-LDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSE 68

Query: 70  GAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
                ++ ++  S +G+   P     +D +       + +A  I D
Sbjct: 69  EPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKD 114

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 9/140 (6%)

Query: 115 DVALEAIRQKVKGGKSGGRKGSSK--AVVELTD-SNFEKLVYNS--DDIWLVEFFAPWCG 169
           +  L   R++             +   V EL     F + +         +V  +     
Sbjct: 87  ENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIK 146

Query: 170 HCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSAS--DA 227
            C  L       A+E    VK   + A+ +      F+    PT+  +  G   ++    
Sbjct: 147 GCDALNSSLICLAAEY-PMVKFCKIKAS-NTGAGDRFSSDVLPTLLVYKGGELLSNFISV 204

Query: 228 QEYNGGRTSQDIVTWALNKY 247
            E          V   LN+Y
Sbjct: 205 TEQLAEEFFTGDVESFLNEY 224

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 160 LVEFFAPWCGHCKNLE----PHWEKAASELEGKVKLGAVDATV--HQRIAGEFNIRGYPT 213
           +V F +  C +C+ +           +  LE +  + +V       Q +A  + + G PT
Sbjct: 23  MVYFHSEHCPYCQQMNTFVLSD-PGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPT 81

Query: 214 IKFFSPGSRSASDAQEYNGGRTSQD 238
             F  P + +  +     G R   +
Sbjct: 82  FVFLVPKAGAWEEVGRLFGSRPRAE 106

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 38  IVEYYAPWCGHCQSFKDEYM---KLATALKGVVKVGAVNAD--EEKSLSSSHGVTGFPTV 92
           +V +++  C +CQ      +    ++  L+    V +V+ D  E + L+  + V G PT 
Sbjct: 23  MVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTF 82

Query: 93  KIFSDKRNPTP----YQGARTADAIIDVALEAIRQK 124
                K           G+R     +   L  +  K
Sbjct: 83  VFLVPKAGAWEEVGRLFGSRPRAEFLKE-LRQVCVK 117

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score = 47.3 bits (111), Expect = 4e-06
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP 219
              + A WC HC++ +  +  A  ++           T   +   E  I  YPT      
Sbjct: 201 GTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII--- 257

Query: 220 GSRSASDAQEYNGGRTSQDIVTWA 243
                 + + Y G R+ + +   +
Sbjct: 258 ------NGRTYTGVRSLEALAVAS 275

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE-FNIRG--YPTIKF 216
           +V     WCG CK L+P + ++    E       V+    +    E F+  G   P I F
Sbjct: 50  MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF 109

Query: 217 FSP 219
             P
Sbjct: 110 LDP 112

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 3/105 (2%)

Query: 38  IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-EEKSLSSSHGVTG--FPTVKI 94
           +V  +  WCG C++ K ++ +     +       VN + EE+         G   P +  
Sbjct: 50  MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF 109

Query: 95  FSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKA 139
                   P       +        +  Q V+G K    + +  A
Sbjct: 110 LDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDA 154

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Length = 137

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPW--CGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
            + ++  +  + +S  I ++ F           +L     +  +   G++    V A   
Sbjct: 19  LVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAE 78

Query: 200 QRIAGEFNIRGYPTIKFFSPG 220
           + +   F +   P++    P 
Sbjct: 79  RGLMARFGVAVCPSLAVVQPE 99

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 13/102 (12%)

Query: 160 LVEFFAPWCGHCKNLEPHWE--KAASELEGKVKLGAVDAT---VHQRIAGEFNI---RGY 211
           L+ F A WC  C+ L+      K  + +    ++  +D      +  ++  +      G 
Sbjct: 33  LLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGI 92

Query: 212 PTIKFFSPG----SRSASDAQEYNGGRTSQDIVTWALNKYTE 249
           P +   +        +           + Q I  +   K TE
Sbjct: 93  PAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDF-FAKITE 133

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 15/143 (10%)

Query: 115 DVALEAIRQK-----VKGGKSGGRKGSSKAVVELTD-SNFEKLVYNSD-DIWLVEFF-AP 166
           +  L   R++      +    G R G    V EL     F + +        +V      
Sbjct: 74  EGCLRKYRRQCMQDMHQKLSFGPRYGF---VYELETGEQFLETIEKEQKVTTIVVNIYED 130

Query: 167 WCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSAS- 225
               C  L    E  A+E    VK   + A+        F+    PT+  +  G   ++ 
Sbjct: 131 GVRGCDALNSSLECLAAEY-PMVKFCKIRASNTGAGD-RFSSDVLPTLLVYKGGELISNF 188

Query: 226 -DAQEYNGGRTSQDIVTWALNKY 247
               E          V   LN+Y
Sbjct: 189 ISVAEQFAEDFFAADVESFLNEY 211

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* Length = 178

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 16/143 (11%), Positives = 38/143 (26%), Gaps = 24/143 (16%)

Query: 136 SSKAVVELTDSNFEKLVYNSDDIWLVEFF--------APWCGHCKNLEPHWEKAA----- 182
               V+ +T  N+  L       + + +            C  C + E  +   A     
Sbjct: 16  DDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRS 75

Query: 183 SELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
              +       VD     ++  +  ++  P +  + P   +     E+            
Sbjct: 76  QAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPF------- 128

Query: 243 ALNKYTENVPPPEIKQIVSEATF 265
               Y  ++ P   +  +    F
Sbjct: 129 ----YQYSLVPENAENTLQFGDF 147

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 14/76 (18%)

Query: 158 IWLVEFFAPWCGHCKNLE------PHWEKAASE--------LEGKVKLGAVDATVHQRIA 203
           I L    + WC  C  ++        ++  A             K          +Q + 
Sbjct: 50  IGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELK 109

Query: 204 GEFNIRGYPTIKFFSP 219
            ++ + G+P + F   
Sbjct: 110 AQYKVTGFPELVFIDA 125

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 13/119 (10%)

Query: 143 LTDSNFEKLVYNSD----DIWLVEFFAPWCGHCKNLE----PHWEKAASELEGKVKLGAV 194
           +  S+      + D    ++ L+ F  P C +C   +    P +          V+   +
Sbjct: 1   MRGSHHHHHHGSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQM 60

Query: 195 DATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPP 253
              +   +     +   PT    +    S    + Y G    +D     L +      P
Sbjct: 61  RDPLPPGLELARPVTFTPTFVLMAGDVESGR-LEGYPG----EDFFWPMLARLIGQAEP 114

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A Length = 123

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 10/92 (10%), Positives = 21/92 (22%), Gaps = 15/92 (16%)

Query: 146 SNFEKLVYNSDDIWLVEFFA--------PWCGHCKNLEPHWEKAASELEGKVKLGAVDA- 196
             F + V   +   +  +F          WC  C   EP   +    +            
Sbjct: 13  EEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVG 72

Query: 197 ------TVHQRIAGEFNIRGYPTIKFFSPGSR 222
                   +        +   PT+  +    +
Sbjct: 73  EKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQK 104

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} Length = 193

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 10/46 (21%), Positives = 17/46 (36%)

Query: 155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
           +  I +VE F   C HC + +   +   +     V+   V A    
Sbjct: 24  AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGG 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	461
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	100.0
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	100.0
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	100.0
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	100.0
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	100.0
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.98
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.97
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.97
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.97
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.96
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.96
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.95
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.95
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.95
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.93
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.92
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.91
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.91
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.9
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.89
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.89
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.88
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.87
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.85
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.84
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.84
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.84
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.84
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.83
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.83
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.82
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.82
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.82
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.82
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.82
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.81
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.81
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.81
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.81
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.81
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.81
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.81
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.81
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.81
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.8
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.8
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.8
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.8
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.8
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.8
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.8
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.8
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.79
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.79
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.79
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.79
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.79
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.79
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.78
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.78
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.78
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.78
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.78
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.78
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.77
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.77
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.77
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.77
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.77
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.77
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.77
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.77
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.76
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.76
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.76
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.76
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.76
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.76
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.76
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.75
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.75
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.75
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.75
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.75
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.75
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.75
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.75
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.74
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.74
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	99.74
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.74
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.73
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.73
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.73
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.73
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.73
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.72
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.72
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.72
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.72
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.71
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.71
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.71
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.71
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.54
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.7
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.69
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.69
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.69
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.69
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.68
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.67
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.66
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.66
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.66
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.66
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.66
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.66
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.65
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.65
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.64
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.64
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.63
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.63
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.63
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.63
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.63
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.63
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.63
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.63
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.63
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.62
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.62
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.62
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.62
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.62
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.62
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.62
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.61
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.61
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.61
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.61
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.61
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.61
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.61
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.61
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.6
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.6
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.6
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.6
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.59
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.59
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.59
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.59
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.59
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.58
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.58
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.58
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.58
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.57
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.57
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.57
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.57
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.57
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.57
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.56
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.56
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.55
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.55
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.55
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.55
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.55
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.55
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.54
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.54
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.54
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.54
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.54
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.54
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.53
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.53
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.52
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.52
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.28
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.52
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.52
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.51
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.51
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.51
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.5
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.5
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.49
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.49
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.49
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.48
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.48
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.48
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.47
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.47
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.47
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.47
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.46
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.46
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.45
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.44
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.17
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.44
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.44
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.44
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.42
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.42
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.41
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.41
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	99.39
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.39
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.38
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.37
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.37
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.36
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.36
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.35
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.34
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.34
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.34
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.34
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.33
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.33
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.33
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.32
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.32
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.32
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.32
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.32
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.31
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.3
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.3
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.29
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.28
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.25
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.25
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.25
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.24
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.24
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.24
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.23
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.23
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.23
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.22
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.19
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.19
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.19
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.18
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.17
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.16
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.15
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.14
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.14
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.12
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.12
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.12
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.11
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.11
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.11
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.1
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.7
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.1
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.1
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.09
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.09
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.08
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.05
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	99.05
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.04
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.03
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.03
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.03
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.98
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.98
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.98
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.96
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.95
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.95
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.95
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.95
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.95
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.95
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	98.93
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.92
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.92
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.9
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.9
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.89
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.41
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.88
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.88
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.39
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.87
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.87
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.85
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.85
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.84
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.83
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.83
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.83
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.82
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.81
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.8
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.8
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.8
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.79
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.77
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.76
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.76
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.75
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.75
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.73
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.73
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.72
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.72
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.72
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.72
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.72
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.71
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.71
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.7
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.69
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.68
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.66
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.66
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.65
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.64
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.64
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.64
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.63
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.63
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.62
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.62
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.61
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.6
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.6
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.59
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.59
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.57
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.57
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.54
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.53
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.52
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.51
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.5
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.49
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.49
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.49
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.49
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.48
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.48
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.47
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.47
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.46
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.46
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.46
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.44
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.43
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.42
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.42
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.41
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.4
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.4
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.38
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.38
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.36
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.36
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.34
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.33
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.32
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.32
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.31
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.3
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.27
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.26
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.26
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.23
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.22
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.17
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.17
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.17
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	97.46
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.13
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.13
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.13
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.4
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.11
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.11
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.1
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.08
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.06
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.05
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.03
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.03
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	98.03
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.03
3me7_A	170	Putative uncharacterized protein; electron transfe	98.02
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	97.98
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	97.98
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.98
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.97
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	97.97
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	97.97
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.95
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	97.95
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.94
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	97.94
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.93
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	97.92
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.92
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.91
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	97.91
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	97.9
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.9
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.89
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.88
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	97.88
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	97.87
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.85
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	97.83
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	97.81
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	97.8
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	97.8
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.8
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.79
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.78
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.74
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	97.73
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	97.72
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	97.71
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	97.71
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.7
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	97.68
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.67
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.66
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.66
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	97.66
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	97.66
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	97.64
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	97.63
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	97.61
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.58
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	97.58
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	97.57
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	97.57
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.55
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	97.55
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.55
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	97.51
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	97.48
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	97.48
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	97.45
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	97.45
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	97.44
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	97.44
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.44
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	97.42
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	97.39
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	97.39
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	97.38
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	97.38
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.36
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	97.31
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	97.22
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.2
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	97.2
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.17
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.16
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	97.14
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	97.12
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.07
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.04
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.01
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	96.99
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	96.99
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	96.96
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	96.94
3me7_A	170	Putative uncharacterized protein; electron transfe	96.9
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	96.88
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	96.88
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	96.88
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	96.86
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	96.86
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	96.86
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	96.77
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	96.76
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	96.66
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	96.63
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	96.62
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	96.61
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	96.47
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	96.47

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=100.00  E-value=2.1e-56  Score=447.99  Aligned_cols=387  Identities=26%  Similarity=0.435  Sum_probs=320.7

Q ss_pred             CCceEcCccchhHHHhcCC---CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSD---EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~---~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      ++|++||+++|++ ++.++   ++++|+||||||++|+++.|.|+++++.+++.+.|+.|||++++++|++|+|+++||+
T Consensus         1 s~v~~l~~~~f~~-~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl   79 (481)
T 3f8u_A            1 SDVLELTDDNFES-RISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTL   79 (481)
T ss_dssp             CCCEEECTTTHHH-HTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEE
T ss_pred             CceEEecHHHHHH-HHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEE
Confidence            4789999999999 77777   8999999999999999999999999999998899999999999999999999999999


Q ss_pred             EEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEc-ChhhhhhhhhcCCCeEEEEEeCCCChhh
Q psy17502         93 KIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVEL-TDSNFEKLVYNSDDIWLVEFFAPWCGHC  171 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~~~~~~~~~~~~~~v~f~~~~c~~c  171 (461)
                      ++|++|+.+.+|.|.++.+.|.+|+.+++.               +++..+ +.++++++ .+.++.++|+||.++   |
T Consensus        80 ~~~~~g~~~~~~~G~~~~~~l~~~~~~~~~---------------~~~~~i~~~~~~~~~-~~~~~~~vv~~~~~~---~  140 (481)
T 3f8u_A           80 KIFRDGEEAGAYDGPRTADGIVSHLKKQAG---------------PASVPLRTEEEFKKF-ISDKDASIVGFFDDS---F  140 (481)
T ss_dssp             EEEETTEEEEECCSCSSHHHHHHHHHHHTS---------------CSEEEECSHHHHHHH-TTSSSCEEEEEESCT---T
T ss_pred             EEEeCCceeeeecCccCHHHHHHHHHhhcc---------------cCceecCCHHHHHHH-HhcCCcEEEEEECCC---c
Confidence            999998778899999999999999999873               346666 56777776 467788999999887   4


Q ss_pred             hhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCC---CCCcCccccc-CCCCHHHHHHHHHhhc
Q psy17502        172 KNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGS---RSASDAQEYN-GGRTSQDIVTWALNKY  247 (461)
Q Consensus       172 ~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~---~~~~~~~~y~-g~~~~~~i~~fi~~~~  247 (461)
                      ......|.++|..+++.+.|+.+   .+.++++++++... .+++|++..   +.......|+ |..+.++|.+||..+.
T Consensus       141 ~~~~~~f~~~a~~~~~~~~F~~~---~~~~~~~~~~v~~~-~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~  216 (481)
T 3f8u_A          141 SEAHSEFLKAASNLRDNYRFAHT---NVESLVNEYDDNGE-GIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENI  216 (481)
T ss_dssp             CHHHHHHHHHHHHHTTTSCEEEE---CCHHHHHHHCSSSE-EEEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHhccCceEEEE---CCHHHHHHhCCCCC-cEEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhC
Confidence            56688999999999999999986   56788999999974 488888321   1113567888 7899999999999987


Q ss_pred             cCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcc--eEEEecccccchhHHH
Q psy17502        248 TENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV--WGWIWSEAVAQPDLEN  325 (461)
Q Consensus       248 ~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~--f~~v~~d~~~~~~~~~  325 (461)
                           .|.+.+++..+....+  +.+++++++... .....+..+.+++.++++|++|+++.  +.|+++|...+..+++
T Consensus       217 -----~p~v~e~t~~n~~~~~--~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~~~~~~l~  288 (481)
T 3f8u_A          217 -----FGICPHMTEDNKDLIQ--GKDLLIAYYDVD-YEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELS  288 (481)
T ss_dssp             -----TTTSCEECTTTHHHHT--TSSEEEEEECCC-TTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHG
T ss_pred             -----CCCccccChhHHHHhc--CCCceEEEEecc-cccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHH
Confidence                 8999999887765543  455655554332 12233444567889999999999872  3788888778888899


Q ss_pred             hhCCC--CCCCccEEEEccCccccccCCCCCCHH--HHHHHHHHHhcCCCCCCCcCCCCCCCcccccCCCCCCCCCCccc
Q psy17502        326 VLEIG--GFGYPAMAVLNAKKMKYSLLKGPFSYD--GINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEE  401 (461)
Q Consensus       326 ~lgl~--~~~~P~l~i~~~~~~k~~~~~~~~~~~--~i~~Fi~~~~~Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~  401 (461)
                      .||++  ..+.|+++|++..+.+|.+ .++++.+  +|.+|++++++|++ ++.++|+++|..                +
T Consensus       289 ~~gl~~~~~~~P~~~i~~~~~~ky~~-~~~~t~e~~~l~~f~~~~~~g~~-~~~~~s~~~p~~----------------~  350 (481)
T 3f8u_A          289 DFGLESTAGEIPVVAIRTAKGEKFVM-QEEFSRDGKALERFLQDYFDGNL-KRYLKSEPIPES----------------N  350 (481)
T ss_dssp             GGTCCCCTTCSCEEEEECSSSCEEEC-CSCCCTTSHHHHHHHHHHHHTCC-CCCCCCCCCCSC----------------C
T ss_pred             HcCCCcccCCCcEEEEEcCCCcccCC-CcccCccHHHHHHHHHHHhcCCc-ccccccCCCCCC----------------C
Confidence            99998  3479999999865678865 4789999  99999999999999 599999999842                1


Q ss_pred             ccccCccccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHHHHHHHHHhh
Q psy17502        402 DIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       402 ~~~~~~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      ...+..++       |++|++.+.+++++|||.||||||+||+++.|.|++||+.+++
T Consensus       351 ~~~v~~~~-------~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~  401 (481)
T 3f8u_A          351 DGPVKVVV-------AENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSK  401 (481)
T ss_dssp             CSSSEEEC-------TTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCeEEec-------ccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhcc
Confidence            12223332       3699999999999999999999999999999999999999875

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=100.00  E-value=6.5e-54  Score=432.00  Aligned_cols=377  Identities=23%  Similarity=0.423  Sum_probs=313.8

Q ss_pred             ccCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCchhhHhhcCCCC
Q psy17502         10 CLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEKSLSSSHGVTG   88 (461)
Q Consensus        10 ~~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~~i~~   88 (461)
                      ..+...++|+.||+++|++ +++++++++|+||||||++|+.+.|.|+++++.+++. +.++.|||++++++|++|+|++
T Consensus         8 ~~~~~~~~v~~l~~~~f~~-~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~   86 (504)
T 2b5e_A            8 AVAPEDSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPG   86 (504)
T ss_dssp             SSCCTTSSCEECCTTTHHH-HHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCS
T ss_pred             CCCCCCCCcEECCHHHHHH-HHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCc
Confidence            3455678899999999999 7888999999999999999999999999999999885 9999999999999999999999


Q ss_pred             ccEEEEEcCCCC--CccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCC--eEEEEEe
Q psy17502         89 FPTVKIFSDKRN--PTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDD--IWLVEFF  164 (461)
Q Consensus        89 ~P~l~~~~~g~~--~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~--~~~v~f~  164 (461)
                      +||+++|++|+.  +..|.|.++.+.|.+|+.+++.               +++..++.  +++++ +.++  ..+|+||
T Consensus        87 ~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~---------------~~v~~i~~--~~~~~-~~~~~~~~~v~~f  148 (504)
T 2b5e_A           87 FPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ---------------PAVAVVAD--LPAYL-ANETFVTPVIVQS  148 (504)
T ss_dssp             SSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHTS---------------CSEEECSC--HHHHH-HHSCCSSCEEEEE
T ss_pred             CCEEEEEeCCccccceeecCCCCHHHHHHHHHHhcC---------------CcceeHHH--HHHHH-hcCCCceEEEEEe
Confidence            999999999876  8899999999999999999873               34667776  66665 3444  6777777


Q ss_pred             CCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC-C---CHHHHH
Q psy17502        165 APWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG-R---TSQDIV  240 (461)
Q Consensus       165 ~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~-~---~~~~i~  240 (461)
                      .+.   .......|.++|..+++.+.|+.++     ++++++++.    +++|++.    +....|+|. .   +.+.|.
T Consensus       149 ~~~---~~~~~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~----i~l~~~~----~~~~~~~g~~~~~~~~~~l~  212 (504)
T 2b5e_A          149 GKI---DADFNATFYSMANKHFNDYDFVSAE-----NADDDFKLS----IYLPSAM----DEPVVYNGKKADIADADVFE  212 (504)
T ss_dssp             ESC---CHHHHHHHHHHHHHTTTTCEEEEEE-----CTTSCCEEE----EEETTEE----EEEEECCSCHHHHTSHHHHH
T ss_pred             CCC---CchHHHHHHHHHHHhhcCcEEEEEH-----HHHHhcCCe----EEecCCC----CcccccCCcccccCCHHHHH
Confidence            765   3566889999999999999999875     577888875    7888765    256678898 6   999999


Q ss_pred             HHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccc
Q psy17502        241 TWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQ  320 (461)
Q Consensus       241 ~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~  320 (461)
                      +||..+.     .|.+.+++..+....+..+.+++++++.      ..+..+.+...++++|++|++++ .|+++|...+
T Consensus       213 ~fi~~~~-----~p~v~~~t~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~l~~~a~~~~~~i-~F~~id~~~~  280 (504)
T 2b5e_A          213 KWLQVEA-----LPYFGEIDGSVFAQYVESGLPLGYLFYN------DEEELEEYKPLFTELAKKNRGLM-NFVSIDARKF  280 (504)
T ss_dssp             HHHHHHS-----SCSSCBCCHHHHHHHHHTTSCEEEEEES------SHHHHHHHHHHHHHHHHHTTTTC-EEEEEEHHHH
T ss_pred             HHHHhcc-----cCCcccCCHhHHHHHhcCCCcEEEEEec------CcccHHHHHHHHHHHHHhcCCee-EEEEEehhhh
Confidence            9999887     8999999877665555555555554432      13344788999999999999986 7888887778


Q ss_pred             hhHHHhhCCCCCCCccEEEEccCc-cccccCC-CC-----------CCHHHHHHHHHHHhcCCCCCCCcCCCCCCCcccc
Q psy17502        321 PDLENVLEIGGFGYPAMAVLNAKK-MKYSLLK-GP-----------FSYDGINEFLRDLSYGRGHTAPVKGAALPQINQV  387 (461)
Q Consensus       321 ~~~~~~lgl~~~~~P~l~i~~~~~-~k~~~~~-~~-----------~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP~~~~~  387 (461)
                      ..+++.||+ ..+.|+++|++..+ .+|.+.. ++           ++.+.|.+|++++..|++ .|.++|+++|..   
T Consensus       281 ~~~~~~~gl-~~~~P~v~i~~~~~~~ky~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~~-~p~~~s~~~p~~---  355 (504)
T 2b5e_A          281 GRHAGNLNM-KEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDA-SPIVKSQEIFEN---  355 (504)
T ss_dssp             TTHHHHTTC-CSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCC-CCCCCCCCCCCC---
T ss_pred             HHHHHHcCC-cccCCEEEEEeCCcCcccCCCCCccchhhccccccccCHHHHHHHHHHHHcCCC-ChhhhcCCCCcc---
Confidence            889999999 67899999998754 5776543 55           899999999999999999 599999998842   


Q ss_pred             cCCCCCCCCCCcccccccCccccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHHHHHHHHHh
Q psy17502        388 DAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK  458 (461)
Q Consensus       388 ~~~d~~~~~~p~~~~~~~~~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~~~la~~~k  458 (461)
                                   +++.+..++       +++|++.|.+++++|||.|||||||||+++.|.|++||+.++
T Consensus       356 -------------~~~~v~~l~-------~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~  406 (504)
T 2b5e_A          356 -------------QDSSVFQLV-------GKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYA  406 (504)
T ss_dssp             -------------CSCSEEEEC-------TTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHH
T ss_pred             -------------ccccceecc-------cccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhh
Confidence                         122233343       369999999999999999999999999999999999999986

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=3.3e-47  Score=402.80  Aligned_cols=387  Identities=24%  Similarity=0.499  Sum_probs=302.9

Q ss_pred             cccCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCC
Q psy17502          9 HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTG   88 (461)
Q Consensus         9 ~~~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~   88 (461)
                      ++++...++|+.||.++|++ +++++++++|+||||||++|+.+.|.|+++++.+++.+.+++|||++++++|++|+|++
T Consensus       109 fg~~~~~~~v~~l~~~~f~~-~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~  187 (780)
T 3apo_A          109 FGIYDDDPEIITLERREFDA-AVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNS  187 (780)
T ss_dssp             SSTTTTCTTEEECCHHHHHH-HHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC-------
T ss_pred             hcccCCCcceeeechHhHHh-hhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCce
Confidence            45667778899999999999 77889999999999999999999999999999998889999999999999999999999


Q ss_pred             ccEEEEEcCCCCCccccCCcchhHHHHHHHHHHhhhhc--------------------------CCCCC--C--------
Q psy17502         89 FPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVK--------------------------GGKSG--G--------  132 (461)
Q Consensus        89 ~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~--------------------------~~~~~--~--------  132 (461)
                      +||+++|++|+...+|.|.++.+.|.+|+.+++.+...                          .....  .        
T Consensus       188 ~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~vi~f~~~~~~~~~~~~~~~l~  267 (780)
T 3apo_A          188 YPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLS  267 (780)
T ss_dssp             -CEEEEECTTSCCEECCSCSCHHHHHHHHHTTSCCCEEECCHHHHHHHHHHHHHHTCEEEEEEECTTSCCCCHHHHHHHH
T ss_pred             eeeEEEEeCCcEeeEecCCCCHHHHHHHHHHhchhhheeccchhhHHHHHhhhccCCCEEEEEecCcccccCHHHHHHHH
Confidence            99999999998889999999999999999765432111                          00000  0        


Q ss_pred             --------------------------------------------------------------------------------
Q psy17502        133 --------------------------------------------------------------------------------  132 (461)
Q Consensus       133 --------------------------------------------------------------------------------  132 (461)
                                                                                                      
T Consensus       268 ~~f~~~~~f~~v~c~~~~~l~~~~gi~~~p~~~f~~~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~~p~v~~it~~~f~~  347 (780)
T 3apo_A          268 GMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLED  347 (780)
T ss_dssp             HHTTTTEEEEEEETTTSHHHHTCC-----CEEEECTTCCSSTTTGGGSEEECCCCHHHHHHHHHHHSCCCCEECHHHHHH
T ss_pred             HHhhccceEEEEEcCCCHHHHHHhCCCCCceeeeccccccCCCcccceeccccccHHHHHHHHHHhCCCcccCCHHHHHH
Confidence                                                                                            


Q ss_pred             -------------------------------C-C------------------------------C-C-------------
Q psy17502        133 -------------------------------R-K------------------------------G-S-------------  136 (461)
Q Consensus       133 -------------------------------~-~------------------------------~-~-------------  136 (461)
                                                     . .                              + .             
T Consensus       348 ~~~~~~~lv~F~~~~~~~~~~~~~~~~A~~~~~~~i~f~~~D~~~~~~~~~~~~~~~p~i~l~~~~~~e~~~~~~g~~~~  427 (780)
T 3apo_A          348 RLAHHRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQPSLAVFKGQGTKEYEIHHGKKIL  427 (780)
T ss_dssp             HHTTSEEEEEEECC-----CCGGGGGHHHHHGGGTEEEEEEEGGGCHHHHHHTTCCSCEEEEEESSTTSSEEECCSCCCH
T ss_pred             HhccCCeEEEEecCCccccchHHHHHHHHhhccCceeEEEEeCCCchhhHhhccccCChhhhccCCCcceeeecccHhhH
Confidence                                           0 0                              0 0             


Q ss_pred             -----------CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhh
Q psy17502        137 -----------SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGE  205 (461)
Q Consensus       137 -----------~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~  205 (461)
                                 .+.+..++.+++.+.   .+++++|.||++||++|+.+.|.|.++|+.+++.+.|+.+|++.+..++++
T Consensus       428 ~~i~~f~~~~~~~~v~~l~~~~~~~~---~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~~~~~  504 (780)
T 3apo_A          428 YDILAFAKESVNSHVTTLGPQNFPAS---DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNM  504 (780)
T ss_dssp             HHHHHHHHHHHTSCEEECCTTTSCTT---CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHH
T ss_pred             HHHHHHhhhccCCCCEecCHHHHHHc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEeCCCCHHHHHH
Confidence                       011222233333221   356899999999999999999999999999998999999999999999999


Q ss_pred             cCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcC----CCeEEEEEeC
Q psy17502        206 FNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACED----HPLCIVAVLP  281 (461)
Q Consensus       206 ~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~----~~~~~i~~~~  281 (461)
                      |+|.++|++++++.|     ....|.|.++.++|.+|+.+..     .|.+..++. ..+..+...    ..+++.++.|
T Consensus       505 ~~v~~~Pt~~~~~~g-----~~~~~~g~~~~~~l~~fi~~~~-----~~~v~~l~~-~~f~~~v~~~~~~~~~lv~F~ap  573 (780)
T 3apo_A          505 YNIQAYPTTVVFNQS-----SIHEYEGHHSAEQILEFIEDLR-----NPSVVSLTP-STFNELVKQRKHDEVWMVDFYSP  573 (780)
T ss_dssp             TTCCSSSEEEEEETT-----EEEEECSCSCHHHHHHHHHHHH-----SCSEEECCH-HHHHHHTTTCCTTCCEEEEEECT
T ss_pred             cCCCcCCeEEEEcCC-----ceeeecCcccHHHHHHHHHhhc-----ccceeecCc-ccHHHHhhccCCCCeEEEEEECC
Confidence            999999999999876     3467899999999999999887     467888864 455555532    2345555555


Q ss_pred             CccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCcc---ccccCCC-CCCHH
Q psy17502        282 HILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKM---KYSLLKG-PFSYD  357 (461)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~---k~~~~~~-~~~~~  357 (461)
                      +     ....+.+...+.++|+.+++++ .|+.+|......+++.+|+.  .+|+++++...+.   ++..|.| ..+.+
T Consensus       574 ~-----C~~c~~~~p~~~~lA~~~~~~v-~~~~vd~~~~~~l~~~~~v~--~~Pti~~~~~~~~~~~~~~~y~g~~~~~~  645 (780)
T 3apo_A          574 W-----SHPSQVLMPEWKRMARTLTGLI-NVGSVDCGQYHSFCTQENVQ--RYPEIRFYPQKSSKAYQYHSYNGWNRDAY  645 (780)
T ss_dssp             T-----CHHHHHHHHHHHHHHHHHTTTS-EEEEEETTTTHHHHHHTTCC--SSSEEEEECCCSSSCCSCEECCCSCCSHH
T ss_pred             C-----CHHHHHhhHHHHHHHHHhhCCe-EEEEEECcchHHHHHHcCCC--CCCeEEEEcCCCcCccchhhcCCCCCCHH
Confidence            5     4445678889999999999875 77777877788889999998  5899999976542   4566788 88999


Q ss_pred             HHHHHHHHHhcCCCCCCCcCCCCCCCcccccCCCCCCCCCCcccccccCccccCCCCCCcccccchhccCCccEEEEEec
Q psy17502        358 GINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYA  437 (461)
Q Consensus       358 ~i~~Fi~~~~~Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v~~~~~~~~~~~f~~~v~d~~kdvlv~fya  437 (461)
                      +|.+|+++...+.+                                  ..+.       +.+|++.+.+.++.|+|.|||
T Consensus       646 ~l~~fi~~~~~~~v----------------------------------~~l~-------~~~~~~~~~~~~~~v~v~F~a  684 (780)
T 3apo_A          646 SLRSWGLGFLPQAS----------------------------------IDLT-------PQTFNEKVLQGKTHWVVDFYA  684 (780)
T ss_dssp             HHHHHHHTTSCCCS----------------------------------EEEC-------HHHHHHHTTTCSSCEEEEEEC
T ss_pred             HHHHHHhhhccccc----------------------------------ccCC-------HHHHHHHHhcCCCeEEEEEEC
Confidence            99999988642110                                  1121       259999899999999999999


Q ss_pred             CcchhhhhchhHHHHHHHHHhh
Q psy17502        438 PWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       438 pwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      |||++|+++.|.|++||+.+++
T Consensus       685 ~wC~~C~~~~p~~~~la~~~~~  706 (780)
T 3apo_A          685 PWSGPSQNFAPEFELLARMIKG  706 (780)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999863

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.2e-44  Score=350.86  Aligned_cols=331  Identities=16%  Similarity=0.274  Sum_probs=248.5

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHc------CCceEEEEEecCCchhhHhhcCCCC
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL------KGVVKVGAVNADEEKSLSSSHGVTG   88 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~------~~~v~~~~vd~~~~~~l~~~~~i~~   88 (461)
                      .+.|++||+++|++ +++++++++|+||||||++|+++.|.|+++++.+      .+++.++.|||++++++|++|+|++
T Consensus         4 ~~~v~~l~~~~f~~-~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~   82 (382)
T 2r2j_A            4 GSEITSLDTENIDE-ILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISK   82 (382)
T ss_dssp             ----CBCCTTTHHH-HHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCE
T ss_pred             CCceEECCHHHHHH-HHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCc
Confidence            45799999999999 7888899999999999999999999999999998      3459999999999999999999999


Q ss_pred             ccEEEEEcCCCCCc-cccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcC-hhhhhhhhhcCCCeEEEEEeCC
Q psy17502         89 FPTVKIFSDKRNPT-PYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELT-DSNFEKLVYNSDDIWLVEFFAP  166 (461)
Q Consensus        89 ~P~l~~~~~g~~~~-~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~~~~~~v~f~~~  166 (461)
                      +||+++|++|+... .|.|.++.+.|.+|+.+++.               +++..++ .+++.+ + ..+..++|+||++
T Consensus        83 ~Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~---------------~~v~~l~~~~~l~~-l-~~~~~~~v~ff~~  145 (382)
T 2r2j_A           83 YPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKS---------------DPIQEIRDLAEITT-L-DRSKRNIIGYFEQ  145 (382)
T ss_dssp             ESEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHS---------------CCCEEC--------------CCEEEEEESC
T ss_pred             CCEEEEEeCCcEeeeeecCcchHHHHHHHHHHhcc---------------CCceecCCHHHHHH-h-cCCCCEEEEEECC
Confidence            99999999886655 59999999999999999873               2355664 345666 3 5677899999998


Q ss_pred             CChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCC-CHHHHHHHHHh
Q psy17502        167 WCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR-TSQDIVTWALN  245 (461)
Q Consensus       167 ~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~-~~~~i~~fi~~  245 (461)
                      ++   ....+.|.++|..+++.+.|+.+.+    ++++++++.++| +++++.+..  .....|+|.+ +.++|.+||..
T Consensus       146 ~~---~~~~~~f~~~A~~~~~~~~F~~~~~----~~~~~~~v~~~p-i~~~~~~~~--~~~~~y~g~~~~~~~l~~fi~~  215 (382)
T 2r2j_A          146 KD---SDNYRVFERVANILHDDCAFLSAFG----DVSKPERYSGDN-IIYKPPGHS--APDMVYLGAMTNFDVTYNWIQD  215 (382)
T ss_dssp             SS---SHHHHHHHHHHHHHTTTCEEEEEES----CC--------CE-EEEECSSSS--SCCEECCSCTTCHHHHHHHHHH
T ss_pred             CC---ChhHHHHHHHHHHhhccceEEEEeh----hhHHhhCCCCCc-eEECCCCCC--CcCcccCCCCCCHHHHHHHHHh
Confidence            74   4457899999999999999988754    367789999889 555444211  2467899998 99999999999


Q ss_pred             hccCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHH
Q psy17502        246 KYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLEN  325 (461)
Q Consensus       246 ~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~  325 (461)
                      +.     .|.+.+++..+....+..+.+++++++.+.    ..+..+.+++.+.+++.++++++ .|+++|...+..+++
T Consensus       216 ~~-----~p~v~elt~~~~~~~~~~~~~~~v~f~~~~----~~~~~~~~~~~~~~~~~~~~~~i-~f~~id~~~~~~~~~  285 (382)
T 2r2j_A          216 KC-----VPLVREITFENGEELTEEGLPFLILFHMKE----DTESLEIFQNEVARQLISEKGTI-NFLHADCDKFRHPLL  285 (382)
T ss_dssp             HH-----SCSSEECCHHHHHHHHTTCCCEEEEEECTT----CCHHHHHHHHHHHHHTGGGTTTS-EEEEEETTTTHHHHH
T ss_pred             cc-----cCceEecChhhHHHHhcCCCcEEEEEecCC----chHHHHHHHHHHHHHHHHhCCee-EEEEEchHHhHHHHH
Confidence            88     799999988887776667778877766543    23445677788888888998875 788888878888999


Q ss_pred             hhCCCCCCCccEEEEccCcccccc--CCCCCCHHHHHHHHHHHhcCCCCCCCcCCCCCCCcc
Q psy17502        326 VLEIGGFGYPAMAVLNAKKMKYSL--LKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQIN  385 (461)
Q Consensus       326 ~lgl~~~~~P~l~i~~~~~~k~~~--~~~~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP~~~  385 (461)
                      .||++..++|+++|++.... |.+  +.+.++.++|.+|++++++|++ +|++||||+|+..
T Consensus       286 ~~gl~~~~~P~i~i~~~~~~-y~~~~~~~~~~~~~i~~F~~d~~~Gkl-~p~~kse~~P~~~  345 (382)
T 2r2j_A          286 HIQKTPADCPVIAIDSFRHM-YVFGDFKDVLIPGKLKQFVFDLHSGKL-HREFHHGPDPTDT  345 (382)
T ss_dssp             HTTCCGGGCSEEEEECSSCE-EECCCSGGGGSTTHHHHHHHHHHHTTT-SSCC---------
T ss_pred             HcCCCccCCCEEEEEcchhc-CCCCccccccCHHHHHHHHHHHHCCCc-cccccCCCCCCCC
Confidence            99998778999999876433 432  2345678999999999999999 5999999999753

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=100.00  E-value=5.5e-44  Score=343.71  Aligned_cols=325  Identities=18%  Similarity=0.294  Sum_probs=266.9

Q ss_pred             cCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhH------HHHHHHHHHcCC-ceEEEEEecCCchhhHhh
Q psy17502         11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFK------DEYMKLATALKG-VVKVGAVNADEEKSLSSS   83 (461)
Q Consensus        11 ~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~------~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~   83 (461)
                      .+...++|++||.+||++ +++++++++|.||||||+||+...      |.|+++++.+++ .+.+++|||++++++|++
T Consensus         8 ~~~~~~~v~~lt~~~f~~-~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~   86 (367)
T 3us3_A            8 EYDGVDRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKK   86 (367)
T ss_dssp             CCCCCCCCEECCTTTHHH-HHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHH
T ss_pred             CCCCCCccEECCHHHHHH-HHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHH
Confidence            345567899999999999 778899999999999999974333      699999999987 499999999999999999


Q ss_pred             cCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcC-hhhhhhhhhcCCCeEEEE
Q psy17502         84 HGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELT-DSNFEKLVYNSDDIWLVE  162 (461)
Q Consensus        84 ~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~~~~~~v~  162 (461)
                      |+|+++||+++|++|+ +..|.|.++.+.|.+|+.+++.               +++..++ .+++++++..++++++|+
T Consensus        87 ~~V~~~PTl~~f~~G~-~~~y~G~~~~~~i~~~i~~~~~---------------~~v~~i~~~~~~~~~~~~~~~~~vv~  150 (367)
T 3us3_A           87 LGLTEEDSIYVFKEDE-VIEYDGEFSADTLVEFLLDVLE---------------DPVELIEGERELQAFENIEDEIKLIG  150 (367)
T ss_dssp             HTCCSTTEEEEEETTE-EEECCSCCSHHHHHHHHHHHHS---------------CSEEECCSHHHHHHHHHCCSSCEEEE
T ss_pred             cCCCcCceEEEEECCc-EEEeCCCCCHHHHHHHHHHhcC---------------CCcEEcCCHHHHHHHhccCCCcEEEE
Confidence            9999999999999874 4699999999999999999873               3566774 578887753266889999


Q ss_pred             EeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC-CCHHHHHH
Q psy17502        163 FFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG-RTSQDIVT  241 (461)
Q Consensus       163 f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~-~~~~~i~~  241 (461)
                      ||+++   |....+.|.++|..+++.+.|+.+   .+.+++++|++.. |+|++|+++.   +....|+|. ++.++|.+
T Consensus       151 ff~~~---~~~~~~~f~~~A~~~~~~~~F~~~---~~~~~~~~~~v~~-p~i~lf~~~~---~~~~~y~g~~~~~~~l~~  220 (367)
T 3us3_A          151 YFKNK---DSEHYKAFKEAAEEFHPYIPFFAT---FDSKVAKKLTLKL-NEIDFYEAFM---EEPVTIPDKPNSEEEIVN  220 (367)
T ss_dssp             ECSCT---TCHHHHHHHHHHHHHTTTSCEEEE---CCHHHHHHHTCCT-TCEEEECTTC---SSCEECSSSSCCHHHHHH
T ss_pred             EECCC---CchHHHHHHHHHHhhcCCcEEEEE---CCHHHHHHcCCCC-CeEEEEcCCC---CCCeecCCCCCCHHHHHH
Confidence            99998   457789999999999999999987   3567899999985 9999999863   367789995 99999999


Q ss_pred             HHHhhccCCCCCCcceeecCHHHHHHHhcC-CCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCc-ceEEEeccccc
Q psy17502        242 WALNKYTENVPPPEIKQIVSEATFKEACED-HPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQK-VWGWIWSEAVA  319 (461)
Q Consensus       242 fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~-~f~~v~~d~~~  319 (461)
                      ||..+.     .|.+.+++.++....+... .+..+++|.+    .+....+.+++.++++|++|+++ .+.|+++|...
T Consensus       221 fi~~~~-----~p~v~elt~~~~~~~~~~~~~~~~~~~f~~----~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~  291 (367)
T 3us3_A          221 FVEEHR-----RSTLRKLKPESMYETWEDDMDGIHIVAFAE----EADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDD  291 (367)
T ss_dssp             HHHHTC-----SCSEEECCGGGHHHHHHSCBTTEEEEEECC----TTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGG
T ss_pred             HHHHcC-----ccceeecChhhHHHHHhhccCCcEEEEEEc----CCChhHHHHHHHHHHHHHHcCCCCceEEEEECCcc
Confidence            999987     8999999988776665542 3334444533    23455788889999999999984 24788888766


Q ss_pred             chhHH----HhhCCCCCCCccEEEEccCcc---ccccCC--CCCCHHHHHHHHHHHhcCCCC
Q psy17502        320 QPDLE----NVLEIGGFGYPAMAVLNAKKM---KYSLLK--GPFSYDGINEFLRDLSYGRGH  372 (461)
Q Consensus       320 ~~~~~----~~lgl~~~~~P~l~i~~~~~~---k~~~~~--~~~~~~~i~~Fi~~~~~Gkl~  372 (461)
                      ++..+    +.||+. .++|+++|++..++   +|.+..  +++|.++|.+|++++++|+++
T Consensus       292 ~~~~l~~~~~~fgl~-~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~Gkl~  352 (367)
T 3us3_A          292 FPLLVPYWEKTFDID-LSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEIN  352 (367)
T ss_dssp             CTTTHHHHHHHHTCC-TTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHHTSSC
T ss_pred             chhHHHHHHHhcCCC-CCCCeEEEEecccccceeecCCcccccCCHHHHHHHHHHHHcCCcC
Confidence            66554    459998 47999999997654   454443  479999999999999999995

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=100.00  E-value=6.2e-43  Score=335.17  Aligned_cols=322  Identities=18%  Similarity=0.301  Sum_probs=267.3

Q ss_pred             cCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHH-------HHHHHHHcCC-ceEEEEEecCCchhhHh
Q psy17502         11 LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDE-------YMKLATALKG-VVKVGAVNADEEKSLSS   82 (461)
Q Consensus        11 ~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~-------~~~~a~~~~~-~v~~~~vd~~~~~~l~~   82 (461)
                      .+...++|++||+++|++ +++++++++|.||||||+ |+.+.|+       |+++++.+++ .+.+++|||++++++|+
T Consensus         6 ~~~~~~~v~~l~~~~f~~-~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~   83 (350)
T 1sji_A            6 TYDGKDRVVSLTEKNFKQ-VLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAK   83 (350)
T ss_dssp             CCCCCCCCEEECHHHHHH-HHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHH
T ss_pred             CCCCCCccEECCHHHHHH-HHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHH
Confidence            345567899999999999 788889999999999999 9999999       9999999987 49999999999999999


Q ss_pred             hcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcC-hhhhhhhhhcCCCeEEE
Q psy17502         83 SHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELT-DSNFEKLVYNSDDIWLV  161 (461)
Q Consensus        83 ~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~~~~~~v  161 (461)
                      +|+|+++||+++|++|+ +.+|.|.++.+.|.+|+.+++.               +++..++ .+++++++..++++++|
T Consensus        84 ~~~v~~~Pt~~~~~~g~-~~~~~G~~~~~~l~~~i~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~vv  147 (350)
T 1sji_A           84 KLGFDEEGSLYVLKGDR-TIEFDGEFAADVLVEFLLDLIE---------------DPVEIINSKLEVQAFERIEDQIKLI  147 (350)
T ss_dssp             HHTCCSTTEEEEEETTE-EEEECSCCCHHHHHHHHHTTSS---------------CSEEECCSHHHHHHHHHCCSSCEEE
T ss_pred             hcCCCccceEEEEECCc-EEEecCCCCHHHHHHHHHHhcC---------------CcceeccchHHHHHHhccCCCcEEE
Confidence            99999999999999886 7799999999999999998762               4567774 67788775315678899


Q ss_pred             EEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC-CCHHHHH
Q psy17502        162 EFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG-RTSQDIV  240 (461)
Q Consensus       162 ~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~-~~~~~i~  240 (461)
                      +||+++|   ....+.|.++|..+++.+.|+.+   .++++++++++. +|++++|++++   .....|+|. ++.++|.
T Consensus       148 ~ff~~~~---~~~~~~~~~~A~~~~~~~~f~~~---~~~~~~~~~~v~-~p~i~~~~~~~---~~~~~y~g~~~~~~~l~  217 (350)
T 1sji_A          148 GFFKSEE---SEYYKAFEEAAEHFQPYIKFFAT---FDKGVAKKLSLK-MNEVDFYEPFM---DEPIAIPDKPYTEEELV  217 (350)
T ss_dssp             EECSCTT---SHHHHHHHHHHHHTTTTSEEEEE---CCHHHHHHHTCC-TTCEEEECTTC---SSCEECSSSSCCHHHHH
T ss_pred             EEECCCC---cHHHHHHHHHHHhhccCcEEEEE---CCHHHHHHcCCC-CCcEEEEeCCC---CCceecCCCCCCHHHHH
Confidence            9999984   56689999999999999999987   456799999999 89999999853   256789997 9999999


Q ss_pred             HHHHhhccCCCCCCcceeecCHHHHHHHhcCC-CeEEEEEeCCccccChhhHHHHHHHHHHHHHhccC--cceEEEeccc
Q psy17502        241 TWALNKYTENVPPPEIKQIVSEATFKEACEDH-PLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQ--KVWGWIWSEA  317 (461)
Q Consensus       241 ~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~--~~f~~v~~d~  317 (461)
                      +||..+.     .|.+.+++.++....+..+. +.+++.|.+.    .......+++.++++|++|++  + +.|+++|.
T Consensus       218 ~fi~~~~-----~p~v~elt~~~~~~~~~~~~~~~~~l~f~~~----~~~~~~~~~~~~~~vA~~~~~~~~-~~f~~id~  287 (350)
T 1sji_A          218 EFVKEHQ-----RPTLRRLRPEDMFETWEDDLNGIHIVAFAER----SDPDGYEFLEILKQVARDNTDNPD-LSIVWIDP  287 (350)
T ss_dssp             HHHHHHC-----CCSEEECCTTTHHHHHHSCSSSEEEEEECCT----TSHHHHHHHHHHHHHHHHGGGCSS-CCEEEECG
T ss_pred             HHHHHcC-----ccchhhcChhhHHHHhcCCCCCcEEEEEEcC----CCccHHHHHHHHHHHHHHhCCCCc-eEEEEECc
Confidence            9999987     89999999887766543333 5566555431    122356889999999999996  5 47888887


Q ss_pred             ccchhHH----HhhCCCCCCCccEEEEccCc-ccccc-CC---CCCCHHHHHHHHHHHhcCCC
Q psy17502        318 VAQPDLE----NVLEIGGFGYPAMAVLNAKK-MKYSL-LK---GPFSYDGINEFLRDLSYGRG  371 (461)
Q Consensus       318 ~~~~~~~----~~lgl~~~~~P~l~i~~~~~-~k~~~-~~---~~~~~~~i~~Fi~~~~~Gkl  371 (461)
                      ..++.++    +.||+. .+.|+++|++..+ .+|.+ +.   ++++.++|.+|++++++|++
T Consensus       288 ~~~~~~~~~~~~~~gi~-~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~Gkl  349 (350)
T 1sji_A          288 DDFPLLVAYWEKTFKID-LFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLSGKI  349 (350)
T ss_dssp             GGCHHHHHHHHHHCCSC-TTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHTSCC
T ss_pred             hhhHHHHHHHHhhcCCC-ccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhcCcc
Confidence            7777777    789998 3689999998855 46753 32   48999999999999999997

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=6.8e-38  Score=331.51  Aligned_cols=321  Identities=24%  Similarity=0.445  Sum_probs=267.3

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ..|.++|.++|.+ +  .+++++|.||++||++|+.+.|.|+++|+++++++.|+.|||++++++|++|||+++|+++++
T Consensus       440 ~~v~~l~~~~~~~-~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~  516 (780)
T 3apo_A          440 SHVTTLGPQNFPA-S--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVF  516 (780)
T ss_dssp             SCEEECCTTTSCT-T--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CCCEecCHHHHHH-c--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcCCeEEEE
Confidence            4589999999998 4  778999999999999999999999999999998899999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcC--CCeEEEEEeCCCChhhhh
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNS--DDIWLVEFFAPWCGHCKN  173 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~  173 (461)
                      ++|+ ...|.|.++.++|.+|+.+.+.               ++|..++.+++++++...  +.+++|.||+|||++|+.
T Consensus       517 ~~g~-~~~~~g~~~~~~l~~fi~~~~~---------------~~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~  580 (780)
T 3apo_A          517 NQSS-IHEYEGHHSAEQILEFIEDLRN---------------PSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQV  580 (780)
T ss_dssp             ETTE-EEEECSCSCHHHHHHHHHHHHS---------------CSEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHH
T ss_pred             cCCc-eeeecCcccHHHHHHHHHhhcc---------------cceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHH
Confidence            8764 4789999999999999999873               458899999999987543  467899999999999999


Q ss_pred             hhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccC-CCCHHHHHHHHHhhccCCCC
Q psy17502        174 LEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG-GRTSQDIVTWALNKYTENVP  252 (461)
Q Consensus       174 ~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g-~~~~~~i~~fi~~~~~~~~~  252 (461)
                      +.+.|.++|+.+++.+.|+.+||+.+..+|++++|.++|++++|+.+.+....+..|+| .++.++|.+|+....     
T Consensus       581 ~~p~~~~lA~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~-----  655 (780)
T 3apo_A          581 LMPEWKRMARTLTGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFL-----  655 (780)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEEETTTTHHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTS-----
T ss_pred             hhHHHHHHHHHhhCCeEEEEEECcchHHHHHHcCCCCCCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhc-----
Confidence            99999999999999999999999999999999999999999999987432224667999 899999999999876     


Q ss_pred             CCcceeecCHHHHHHHhc-CCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCC
Q psy17502        253 PPEIKQIVSEATFKEACE-DHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGG  331 (461)
Q Consensus       253 ~p~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~  331 (461)
                      .|.+..++..+....... +.++++.++.++     ..........+.++|.++++++ .++.+|.+..+.+++.||+. 
T Consensus       656 ~~~v~~l~~~~~~~~~~~~~~~v~v~F~a~w-----C~~C~~~~p~~~~la~~~~~~~-~~~~vd~~~~~~~~~~~~v~-  728 (780)
T 3apo_A          656 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPW-----SGPSQNFAPEFELLARMIKGKV-RAGKVDCQAYPQTCQKAGIK-  728 (780)
T ss_dssp             CCCSEEECHHHHHHHTTTCSSCEEEEEECTT-----CHHHHHHHHHHHHHHHHHTTTC-EEEEEETTTCHHHHHHTTCC-
T ss_pred             ccccccCCHHHHHHHHhcCCCeEEEEEECCC-----CHHHHHHHHHHHHHHHHhcCCc-eEEEEECCCCHHHHHhcCCC-
Confidence            566788865544344443 444444444444     4456678888999999998775 67777777788899999998 


Q ss_pred             CCCccEEEEccCcc--ccccCC-CCCCHHHHHHHHHHHhc
Q psy17502        332 FGYPAMAVLNAKKM--KYSLLK-GPFSYDGINEFLRDLSY  368 (461)
Q Consensus       332 ~~~P~l~i~~~~~~--k~~~~~-~~~~~~~i~~Fi~~~~~  368 (461)
                       .+|+++++.....  ++.-+. |..+.+.|.+||+..+.
T Consensus       729 -~~Pt~~~~~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~  767 (780)
T 3apo_A          729 -AYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLE  767 (780)
T ss_dssp             -SSSEEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHTT
T ss_pred             -cCCEEEEEcCCCccccccCcccCCcCHHHHHHHHHHHHH
Confidence             6899999843332  221111 36899999999999874

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=100.00  E-value=2.2e-35  Score=284.46  Aligned_cols=279  Identities=19%  Similarity=0.363  Sum_probs=226.3

Q ss_pred             CCCceeEcC-hhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        136 SSKAVVELT-DSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       136 ~~~~v~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      .++.+..++ .+++++++ +.+++++|+||.+.   +......|.++|..+ +.+.|+.+   .+.++|+++++.. |+|
T Consensus        15 ~~~~~~~l~~~~~~~~~~-~~~~~~vvgff~~~---~~~~~~~f~~~A~~~-~~~~F~~t---~~~~v~~~~~v~~-~~i   85 (361)
T 3uem_A           15 GSEFATTLPDGAAAESLV-ESSEVAVIGFFKDV---ESDSAKQFLQAAEAI-DDIPFGIT---SNSDVFSKYQLDK-DGV   85 (361)
T ss_dssp             CCSSSEECCSHHHHHHHH-HTSSEEEEEECSCT---TSHHHHHHHHHHHHC-SSSCEEEE---CCHHHHHHTTCSS-SEE
T ss_pred             ccccceecCCHHHHHHHH-hcCCcEEEEEEcCC---CchHHHHHHHHHhcC-CCceEEEE---CcHHHHHHhCCCC-CeE
Confidence            345677774 57777764 67899999999875   345678999999998 68999876   5788999999997 999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHH
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNY  294 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  294 (461)
                      ++|++..   +....|+|+++.++|.+||..+.     .|.+.+++.++....+....+..++.|..    ......+.+
T Consensus        86 ~lfk~f~---~~~~~~~g~~~~~~i~~fi~~~~-----~p~v~~~~~~~~~~~~~~~~~~~~v~F~~----~~~~~~~~~  153 (361)
T 3uem_A           86 VLFKKFD---EGRNNFEGEVTKENLLDFIKHNQ-----LPLVIEFTEQTAPKIFGGEIKTHILLFLP----KSVSDYDGK  153 (361)
T ss_dssp             EEEESST---TSEEECCSCCCHHHHHHHHHHHS-----SCSEEECSTTTHHHHHSCSCCEEEEEECC----SSSSSHHHH
T ss_pred             EEEEecC---CCccccCCcCCHHHHHHHHHHcC-----CCcceecCcccHHHHhcCCCCcEEEEEEe----CCchhHHHH
Confidence            9999753   35678999999999999999987     89999999887777666655555555432    235567889


Q ss_pred             HHHHHHHHHhccCcceEEEecccc--cchhHHHhhCCCCCCCccEEEEccCc--cccccCCCCCCHHHHHHHHHHHhcCC
Q psy17502        295 LEILQKLGDKYKQKVWGWIWSEAV--AQPDLENVLEIGGFGYPAMAVLNAKK--MKYSLLKGPFSYDGINEFLRDLSYGR  370 (461)
Q Consensus       295 ~~~~~~va~~~~~~~f~~v~~d~~--~~~~~~~~lgl~~~~~P~l~i~~~~~--~k~~~~~~~~~~~~i~~Fi~~~~~Gk  370 (461)
                      ...++++|++|++++ .|+.+|..  ....+++.||+...++|++++++..+  .+|.+..+.++.++|.+|++++++|+
T Consensus       154 ~~~~~~~A~~~~~~i-~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~  232 (361)
T 3uem_A          154 LSNFKTAAESFKGKI-LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK  232 (361)
T ss_dssp             HHHHHHHHGGGTTTC-EEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHccCce-EEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhcCC
Confidence            999999999999986 66666755  68889999999866799999998743  57776567899999999999999999


Q ss_pred             CCCCCcCCCCCCCcccccCCCCCCCCCCcccccccCccccCCCCCCcccccchhccCCccEEEEEecCcchhhhhchhHH
Q psy17502        371 GHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEY  450 (461)
Q Consensus       371 l~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~l~p~~  450 (461)
                      + ++.++|+++|.     .|+..    |      +..++       +++|++.+++++++|||+||||||+||+++.|.|
T Consensus       233 ~-~~~~~s~~~p~-----~~~~~----~------v~~l~-------~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~  289 (361)
T 3uem_A          233 I-KPHLMSQELPE-----DWDKQ----P------VKVLV-------GKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIW  289 (361)
T ss_dssp             S-CCCCBCCCCCT-----TTTTS----S------SEEEC-------TTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHH
T ss_pred             C-cccccCCCCCc-----ccccC----C------cEEee-------cCchhhhcccCCCcEEEEEecCcCHhHHHHHHHH
Confidence            9 59999999983     33332    2      22232       3699999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy17502        451 MKLATALKV  459 (461)
Q Consensus       451 ~~la~~~k~  459 (461)
                      ++||+.|++
T Consensus       290 ~~la~~~~~  298 (361)
T 3uem_A          290 DKLGETYKD  298 (361)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHhcc
Confidence            999999975

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=100.00  E-value=3e-36  Score=273.91  Aligned_cols=218  Identities=39%  Similarity=0.777  Sum_probs=195.5

Q ss_pred             CCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc---eEEEEEecCCchhhHhhcCCCCcc
Q psy17502         14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV---VKVGAVNADEEKSLSSSHGVTGFP   90 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~---v~~~~vd~~~~~~l~~~~~i~~~P   90 (461)
                      ..+.|+.|++++|++ ++.++++++|+||++||++|+.+.|.|.++++++++.   +.++.|||++++++|++|+|+++|
T Consensus        13 ~~~~v~~l~~~~~~~-~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P   91 (241)
T 3idv_A           13 EENGVLVLNDANFDN-FVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYP   91 (241)
T ss_dssp             EETTEEEECTTTHHH-HHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSS
T ss_pred             cCCCcEEecccCHHH-HHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCC
Confidence            356799999999999 7888899999999999999999999999999999765   999999999999999999999999


Q ss_pred             EEEEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChh
Q psy17502         91 TVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGH  170 (461)
Q Consensus        91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~  170 (461)
                      |+++|++|+.+ +|.|.++.+.+.+|+.+...+...        ..+..+..++.+++.+.+ ..+++++|.||++||++
T Consensus        92 t~~~~~~g~~~-~~~g~~~~~~l~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~v~f~a~wC~~  161 (241)
T 3idv_A           92 TIKILKKGQAV-DYEGSRTQEEIVAKVREVSQPDWT--------PPPEVTLVLTKENFDEVV-NDADIILVEFYAPWCGH  161 (241)
T ss_dssp             EEEEEETTEEE-ECCSCSCHHHHHHHHHHHHSTTCC--------CCCCSSEECCTTTHHHHH-HHCSEEEEEEECTTCTG
T ss_pred             EEEEEcCCCcc-cccCcccHHHHHHHHhhccCcccc--------cccccceeccHHHHHHhh-ccCCeEEEEEECCCCHH
Confidence            99999987554 799999999999999998754322        223457788999999876 56689999999999999


Q ss_pred             hhhhhHHHHHHHHHhcCc---eEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        171 CKNLEPHWEKAASELEGK---VKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       171 c~~~~~~~~~~a~~~~~~---i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |+.+.+.|.++|+.+.+.   +.|+.+|++.+.+++++|+|.++|++++|++|     ....|.|.++.++|.+|+.++.
T Consensus       162 C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g-----~~~~~~g~~~~~~l~~~l~~~~  236 (241)
T 3idv_A          162 CKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG-----RPYDYNGPREKYGIVDYMIEQS  236 (241)
T ss_dssp             GGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETT-----EEEECCSCCSHHHHHHHHHHHT
T ss_pred             HHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECC-----eEEEecCCCCHHHHHHHHHhhh
Confidence            999999999999999754   99999999999999999999999999999987     4455999999999999999886

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.98  E-value=8.6e-31  Score=252.38  Aligned_cols=228  Identities=22%  Similarity=0.414  Sum_probs=192.6

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC--CchhhHhhcCCCC--ccE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD--EEKSLSSSHGVTG--FPT   91 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~--~~~~l~~~~~i~~--~P~   91 (461)
                      ..|.++|.+++.+.+....++++|+||++||++|+++.|.|.++|+++++++.|+.|||+  +.+.+|+.|||++  +|+
T Consensus       117 p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~  196 (361)
T 3uem_A          117 PLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPA  196 (361)
T ss_dssp             CSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSE
T ss_pred             CcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCcc
Confidence            458899999999943344568899999999999999999999999999999999999999  6899999999998  999


Q ss_pred             EEEEcCCCCCcccc---CCcchhHHHHHHHHHHhhhhcCCCCCCCC---CCCCceeEcChhhhhhhhhcCCCeEEEEEeC
Q psy17502         92 VKIFSDKRNPTPYQ---GARTADAIIDVALEAIRQKVKGGKSGGRK---GSSKAVVELTDSNFEKLVYNSDDIWLVEFFA  165 (461)
Q Consensus        92 l~~~~~g~~~~~y~---g~~~~~~i~~~i~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~  165 (461)
                      ++++..|+...+|.   |..+.+.|.+|+...+..........+..   ....++..++.+++.+.+.+.+++++|.||+
T Consensus       197 ~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a  276 (361)
T 3uem_A          197 VRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYA  276 (361)
T ss_dssp             EEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEEC
T ss_pred             EEEEEcCCcccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhhhcccCCCcEEEEEec
Confidence            99999766666776   89999999999999886544321111111   1345688999999999887788999999999


Q ss_pred             CCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        166 PWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       166 ~~c~~c~~~~~~~~~~a~~~~~--~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      +||++|+.+.|.|.++|+.+++  .+.++.+|++.+.  +.+|+|.++|++++|+.+++  .....|.|.++.++|.+||
T Consensus       277 ~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~~~~~~--~~~~~~~G~~~~~~l~~~l  352 (361)
T 3uem_A          277 PWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASAD--RTVIDYNGERTLDGFKKFL  352 (361)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEECSSSS--CCCEECCSCSSHHHHHHHH
T ss_pred             CcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEEECCCC--cceeEecCCCCHHHHHHHH
Confidence            9999999999999999999986  4999999998766  78999999999999976632  3578899999999999999


Q ss_pred             Hhhc
Q psy17502        244 LNKY  247 (461)
Q Consensus       244 ~~~~  247 (461)
                      .++.
T Consensus       353 ~~~~  356 (361)
T 3uem_A          353 ESGG  356 (361)
T ss_dssp             TTTS
T ss_pred             HhcC
Confidence            8765

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.97  E-value=1.7e-30  Score=233.44  Aligned_cols=203  Identities=19%  Similarity=0.250  Sum_probs=173.2

Q ss_pred             cchhHHHh---cCCCeEEEEEECC-CCHhHHhhHHHHHHHHHHcCCceEEEEEecCC--chhhHhhcCCCCccEEEEEcC
Q psy17502         24 SNFDDKVI---KSDEVWIVEYYAP-WCGHCQSFKDEYMKLATALKGVVKVGAVNADE--EKSLSSSHGVTGFPTVKIFSD   97 (461)
Q Consensus        24 ~~f~~~~~---~~~~~~lv~f~~~-~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~~~~   97 (461)
                      +.+.+ ++   .+++.++++||++ ||++|+.+.|.|+++++. .+++.++.|||++  ++++|++|||+++||+++|++
T Consensus        10 ~~~~~-~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~   87 (226)
T 1a8l_A           10 KVIKE-EFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQD   87 (226)
T ss_dssp             HHHHH-HTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEET
T ss_pred             HHHHH-HHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcC
Confidence            44555 44   2456788999999 999999999999999864 5679999999999  999999999999999999988


Q ss_pred             CCCC-ccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeE-EEEEeCCCChhhhhhh
Q psy17502         98 KRNP-TPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIW-LVEFFAPWCGHCKNLE  175 (461)
Q Consensus        98 g~~~-~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~-~v~f~~~~c~~c~~~~  175 (461)
                      |+.. .+|.|..+...+..|+........             ....++.+.++... ..+.++ +|.||++||++|+.+.
T Consensus        88 g~~~~~~~~G~~~~~~l~~~l~~~l~~~~-------------~~~~l~~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~  153 (226)
T 1a8l_A           88 GKDFGVRYFGLPAGHEFAAFLEDIVDVSR-------------EETNLMDETKQAIR-NIDQDVRILVFVTPTCPYCPLAV  153 (226)
T ss_dssp             TBCCSEEEESCCCTTHHHHHHHHHHHHHH-------------TCCCCCHHHHHHHT-TCCSCEEEEEEECSSCTTHHHHH
T ss_pred             CceeeEEEeccCcHHHHHHHHHHHHhhcC-------------CCCCCCHHHHHHHH-hcCCCcEEEEEeCCCCCccHHHH
Confidence            7654 789999999999999988764321             24467888887754 444555 9999999999999999


Q ss_pred             HHHHHHHHHhc----CceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        176 PHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       176 ~~~~~~a~~~~----~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +.+.+++..+.    +.+.|+.+|++.+.+++++|+|.++|++++|++|    .....|.|..+.+.|.+|+.+.
T Consensus       154 p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G----~~~~~~~G~~~~~~l~~~l~~~  224 (226)
T 1a8l_A          154 RMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNG----EDRVEFEGAYPEKMFLEKLLSA  224 (226)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETT----EEEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCC----ceeEEEcCCCCHHHHHHHHHHh
Confidence            99999999997    5899999999999999999999999999999887    3566789999999999999765

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.97  E-value=4.9e-30  Score=230.90  Aligned_cols=202  Identities=17%  Similarity=0.244  Sum_probs=170.5

Q ss_pred             cchhHHHh--cCCCeEEEEEE-----CCCCHhHHhhHHHHHHHHHHc--CCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         24 SNFDDKVI--KSDEVWIVEYY-----APWCGHCQSFKDEYMKLATAL--KGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        24 ~~f~~~~~--~~~~~~lv~f~-----~~~c~~C~~~~~~~~~~a~~~--~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      +.+.+ ++  +...+++|.||     +|||++|+.+.|+|+++++.+  .+++.+++|||++++++|++|+|+++||+++
T Consensus         9 ~~l~~-~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~   87 (229)
T 2ywm_A            9 MQLKE-LAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVI   87 (229)
T ss_dssp             HHHHH-HHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEE
T ss_pred             HHHHH-HHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEE
Confidence            34444 34  44556666665     899999999999999999888  6789999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhh
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNL  174 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~  174 (461)
                      |++|....+|.|.++.+++..|+...+...             ..+..++.+++++.....+..++|.||++||++|+.+
T Consensus        88 ~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~  154 (229)
T 2ywm_A           88 EGDKDYGIRYIGLPAGLEFTTLINGIFHVS-------------QRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSA  154 (229)
T ss_dssp             ESSSCCCEEEESCCCTTHHHHHHHHHHHHH-------------TTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHH
T ss_pred             ECCCcccceecCCccHHHHHHHHHHHHhcc-------------CCccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHH
Confidence            997778889999999999999998876322             2356788889988653334445889999999999999


Q ss_pred             hHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        175 EPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       175 ~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      .+.+.+++..+ +.+.|+.+|++.+++++++|+|.++|++++  +|     ....|.|..+.+.|.+|+.+..
T Consensus       155 ~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G-----~~~~~~G~~~~~~l~~~l~~~~  219 (229)
T 2ywm_A          155 AVMAWDFALAN-DYITSKVIDASENQDLAEQFQVVGVPKIVI--NK-----GVAEFVGAQPENAFLGYIMAVY  219 (229)
T ss_dssp             HHHHHHHHHHC-TTEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GG-----GTEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCeEEEEEECCCCHHHHHHcCCcccCEEEE--CC-----EEEEeeCCCCHHHHHHHHHHHh
Confidence            99999999998 689999999999999999999999999998  44     3456899999999999997754

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.6e-29  Score=230.60  Aligned_cols=228  Identities=27%  Similarity=0.489  Sum_probs=181.3

Q ss_pred             CCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC--CchhhHhhcCCCCcc
Q psy17502         13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD--EEKSLSSSHGVTGFP   90 (461)
Q Consensus        13 ~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P   90 (461)
                      ...+.|++||.++|++.+.+.+++++|+|||+||++|+.+.|.|+++++.+++.+.++.|||+  +++++|++|+|.++|
T Consensus        14 ~~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~P   93 (298)
T 3ed3_A           14 DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFP   93 (298)
T ss_dssp             SSCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSS
T ss_pred             CCCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccc
Confidence            446789999999999944356789999999999999999999999999999888999999998  678999999999999


Q ss_pred             EEEEEcCCC-----------------CCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEc-Chhhhhhhh
Q psy17502         91 TVKIFSDKR-----------------NPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVEL-TDSNFEKLV  152 (461)
Q Consensus        91 ~l~~~~~g~-----------------~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~~~~~~  152 (461)
                      |+++|++|+                 ....|.|.++.+.|.+|+.+.+.               +.+..+ +.+++++++
T Consensus        94 t~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~---------------~~v~~i~~~~~l~~~l  158 (298)
T 3ed3_A           94 TLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR---------------SYVKKFVRIDTLGSLL  158 (298)
T ss_dssp             EEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC---------------CCEEECSCGGGHHHHH
T ss_pred             eEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc---------------cccEEcCCHHHHHHHH
Confidence            999999875                 25789999999999999998763               346677 456787776


Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhh--hhcC-----c-------------cccc
Q psy17502        153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA--GEFN-----I-------------RGYP  212 (461)
Q Consensus       153 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~--~~~~-----i-------------~~~P  212 (461)
                      ...+.+.+++| ..    .....+.|.++|..+++.+.|+.++......+.  ++++     |             ...|
T Consensus       159 ~~~~~~~vi~f-s~----~~~~~~~f~~~A~~~~~~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P  233 (298)
T 3ed3_A          159 RKSPKLSVVLF-SK----QDKISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKS  233 (298)
T ss_dssp             TSCSSEEEEEE-ES----SSSCCHHHHHHHHHTBTTEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSC
T ss_pred             hcCCceEEEEE-cC----CCcchHHHHHHHHHhhcCcEEEEEcchHhhhhhhhhhhcccCcchhhhhhcccccccccCCC
Confidence            44456666666 33    245678999999999999999998644322222  2333     3             5689


Q ss_pred             EEEEEcCCCCCCcCcccccC-CCCHHHHHHHHHhhccCCCCCCcceeecCHHHHH
Q psy17502        213 TIKFFSPGSRSASDAQEYNG-GRTSQDIVTWALNKYTENVPPPEIKQIVSEATFK  266 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g-~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~  266 (461)
                      +|++|+...   +.+..|+| ..+.++|.+||..+.   ...|.+.+++....+.
T Consensus       234 ~lv~~~~~~---~~~~~y~g~~~~~~~i~~fi~~~~---~~~p~~~~ls~~~~~~  282 (298)
T 3ed3_A          234 KLVVFDADK---DKFWEYEGNSINKNDISKFLRDTF---SITPNEGPFSRRSEYI  282 (298)
T ss_dssp             EEEEEETTT---TEEEECCCSSCCHHHHHHHHHHHH---TCCCSSSTTSHHHHHH
T ss_pred             eEEEEcCCC---CceEEeccccCCHHHHHHHHHhhc---CCCCCcCCCchHHHHH
Confidence            999998753   37888996 689999999999544   2378888887765443

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.96  E-value=7e-27  Score=223.68  Aligned_cols=256  Identities=12%  Similarity=0.168  Sum_probs=203.6

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHH-------HHHHHHHhcC-ceEEEEEeCcccHhhhhhcCc
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPH-------WEKAASELEG-KVKLGAVDATVHQRIAGEFNI  208 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~-------~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i  208 (461)
                      .+.|..++.++|.+.+ .++++++|.||++||+ |+.+.|.       |+++|+.+++ .+.|+.|||+.+.++|++|+|
T Consensus        10 ~~~v~~l~~~~f~~~i-~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v   87 (350)
T 1sji_A           10 KDRVVSLTEKNFKQVL-KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGF   87 (350)
T ss_dssp             CCCCEEECHHHHHHHH-TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTC
T ss_pred             CCccEECCHHHHHHHH-hhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCC
Confidence            3468899999999875 6678999999999999 9989888       9999999976 599999999999999999999


Q ss_pred             ccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhc-CCCeEEEEEeCCccccC
Q psy17502        209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACE-DHPLCIVAVLPHILDCQ  287 (461)
Q Consensus       209 ~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~  287 (461)
                      .++||+++|++|     ....|.|.++.+.|.+|+.+..     .|.+.++++...+..++. .....++.|++.     
T Consensus        88 ~~~Pt~~~~~~g-----~~~~~~G~~~~~~l~~~i~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~-----  152 (350)
T 1sji_A           88 DEEGSLYVLKGD-----RTIEFDGEFAADVLVEFLLDLI-----EDPVEIINSKLEVQAFERIEDQIKLIGFFKS-----  152 (350)
T ss_dssp             CSTTEEEEEETT-----EEEEECSCCCHHHHHHHHHTTS-----SCSEEECCSHHHHHHHHHCCSSCEEEEECSC-----
T ss_pred             CccceEEEEECC-----cEEEecCCCCHHHHHHHHHHhc-----CCcceeccchHHHHHHhccCCCcEEEEEECC-----
Confidence            999999999987     3668999999999999999877     677888988888888776 566677777543     


Q ss_pred             hhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCC-CCHHHHHHHHHHH
Q psy17502        288 SSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGP-FSYDGINEFLRDL  366 (461)
Q Consensus       288 ~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~-~~~~~i~~Fi~~~  366 (461)
                       . .......+.++|..+++.. .|..+.   ..++++.+|++   .|++++++..+.+...+.|. ++.++|.+|++..
T Consensus       153 -~-~~~~~~~~~~~A~~~~~~~-~f~~~~---~~~~~~~~~v~---~p~i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~  223 (350)
T 1sji_A          153 -E-ESEYYKAFEEAAEHFQPYI-KFFATF---DKGVAKKLSLK---MNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEH  223 (350)
T ss_dssp             -T-TSHHHHHHHHHHHHTTTTS-EEEEEC---CHHHHHHHTCC---TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHH
T ss_pred             -C-CcHHHHHHHHHHHhhccCc-EEEEEC---CHHHHHHcCCC---CCcEEEEeCCCCCceecCCCCCCHHHHHHHHHHc
Confidence             1 1223468889999998876 444333   45688999997   79999998755455566775 8999999999986


Q ss_pred             hcCCCCCCCcCCCCCCCcccccCCCCCCCCCCcccccccCccccCCCCCCcccccchhccCC-ccEEEEEecCcchhhhh
Q psy17502        367 SYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSD-EVWIVEYYAPWCGHCQS  445 (461)
Q Consensus       367 ~~Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v~~~~~~~~~~~f~~~v~d~~-kdvlv~fyapwC~~Ck~  445 (461)
                      ..+.+          ++                        +..       .||.++..++- +..+|.|+.+||++|.+
T Consensus       224 ~~p~v----------~e------------------------lt~-------~~~~~~~~~~~~~~~~l~f~~~~~~~~~~  262 (350)
T 1sji_A          224 QRPTL----------RR------------------------LRP-------EDMFETWEDDLNGIHIVAFAERSDPDGYE  262 (350)
T ss_dssp             CCCSE----------EE------------------------CCT-------TTHHHHHHSCSSSEEEEEECCTTSHHHHH
T ss_pred             Cccch----------hh------------------------cCh-------hhHHHHhcCCCCCcEEEEEEcCCCccHHH
Confidence            42211          11                        111       47777543322 55667799999999999


Q ss_pred             chhHHHHHHHHHhh
Q psy17502        446 FKDEYMKLATALKV  459 (461)
Q Consensus       446 l~p~~~~la~~~k~  459 (461)
                      +.+.++++|+.++.
T Consensus       263 ~~~~~~~vA~~~~~  276 (350)
T 1sji_A          263 FLEILKQVARDNTD  276 (350)
T ss_dssp             HHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999999999974

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.96  E-value=4.2e-27  Score=213.85  Aligned_cols=230  Identities=13%  Similarity=0.203  Sum_probs=181.0

Q ss_pred             CCceeEcCh-hhhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        137 SKAVVELTD-SNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       137 ~~~v~~l~~-~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      .+++..|++ +++++++ +. +++++|+||+++   |....+.|.++|..+++.+.|+.+   .+.++++++++++ |+|
T Consensus         5 gP~v~~l~s~~~~~~~~-~~~~~v~vVgff~~~---~~~~~~~F~~~A~~lr~~~~F~~t---~~~~v~~~~~v~~-p~i   76 (250)
T 3ec3_A            5 SPPSKEILTLKQVQEFL-KDGDDVVILGVFQGV---GDPGYLQYQDAANTLREDYKFHHT---FSTEIAKFLKVSL-GKL   76 (250)
T ss_dssp             CCSSEECCCHHHHHHHH-HHCSSCEEEEECSCT---TCHHHHHHHHHHHHHTTTCCEEEE---CCHHHHHHHTCCS-SEE
T ss_pred             CCCceecCCHHHHHHHH-hcCCCeEEEEEEcCC---CchHHHHHHHHHHhhhcCcEEEEE---CcHHHHHHcCCCC-CeE
Confidence            467888854 7777764 55 889999999998   568899999999999999999986   4678899999987 999


Q ss_pred             EEEcCCC---CCCcCccccc--CCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChh
Q psy17502        215 KFFSPGS---RSASDAQEYN--GGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSS  289 (461)
Q Consensus       215 ~~~~~~~---~~~~~~~~y~--g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  289 (461)
                      ++|+++.   +..+....|+  |.++.++|.+||..+.     .|.+.+++.++....+ .+.+++++++.++......+
T Consensus        77 vlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~-----~Plv~e~t~~n~~~~~-~~~~l~~~~~~~d~~~~~~~  150 (250)
T 3ec3_A           77 VLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHA-----LPLVGHRKTSNDAKRY-SKRPLVVVYYSVDFSFDYRT  150 (250)
T ss_dssp             EEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHS-----SCTEEEECTTTHHHHS-CSSSEEEEEECCCCSTTTHH
T ss_pred             EEEecchhhccccccceeccCCCCCCHHHHHHHHHHcC-----CCceeecCccchhhhh-ccCccEEEEEecccccccch
Confidence            9999631   1113567788  4799999999999987     8999999988877665 57788877765442222356


Q ss_pred             hHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCC-ccEEEEccCccccccCCCCCCHHHHHHHHHHHhc
Q psy17502        290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGY-PAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSY  368 (461)
Q Consensus       290 ~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~-P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~  368 (461)
                      +++.+++.++++|++|+ ++ .|+++|...+...++.||++..+. |.+++++..+.+|.+..++++.++|.+|++++++
T Consensus       151 ~~~~~~~~~~~vAk~~k-ki-~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  228 (250)
T 3ec3_A          151 ATQFWRNKVLEVAKDFP-EY-TFAIADEEDYATEVKDLGLSESGGDVNAAILDESGKKFAMEPEEFDSDALREFVMAFKK  228 (250)
T ss_dssp             HHHHHHHHHHHHHTTCT-TS-EEEEEETTTTHHHHHHTTCSSCSCSCEEEEECTTSCEEECCCCSCCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhhc-ce-eEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcCCCceecCCcccCCHHHHHHHHHHHHC
Confidence            67889999999999999 64 788888777778899999986554 5788888666789876678999999999999999


Q ss_pred             CCCCCCCcCCCCCCC
Q psy17502        369 GRGHTAPVKGAALPQ  383 (461)
Q Consensus       369 Gkl~~~~~ks~~iP~  383 (461)
                      ||+ +|++||||||+
T Consensus       229 Gkl-~p~~kSepiPe  242 (250)
T 3ec3_A          229 GKL-KPVIKSQPVPK  242 (250)
T ss_dssp             TCC-CCCC-------
T ss_pred             CCc-cceeecCCCCC
Confidence            999 59999999995

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.95  E-value=7.1e-27  Score=212.81  Aligned_cols=229  Identities=19%  Similarity=0.248  Sum_probs=179.0

Q ss_pred             CCceeEcC-hhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        137 SKAVVELT-DSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       137 ~~~v~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      .+++..|+ .++++++ ++.+++++|+||++|   |....+.|.++|..+++.+.|+.+   .+.++++++++.+ |+|+
T Consensus         5 gP~v~~l~s~~~~~~~-l~~~~v~vvgff~~~---~~~~~~~f~~~A~~lr~~~~F~~~---~~~~v~~~~~~~~-p~i~   76 (252)
T 2h8l_A            5 SPASVPLRTEEEFKKF-ISDKDASIVGFFDDS---FSEAHSEFLKAASNLRDNYRFAHT---NVESLVNEYDDNG-EGII   76 (252)
T ss_dssp             -CCEEECCSHHHHHHH-HTSSSCEEEEEESCT---TSHHHHHHHHHHHHTTTTSCEEEE---CCHHHHHHHCSSS-EEEE
T ss_pred             CCCceeecCHHHHHHH-hhcCCeEEEEEECCC---CChHHHHHHHHHHhcccCcEEEEE---ChHHHHHHhCCCC-CcEE
Confidence            45688885 5556655 577789999999998   567889999999999999999987   4677999999996 9999


Q ss_pred             EEcCCC---CCCcCcccc-cCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhH
Q psy17502        216 FFSPGS---RSASDAQEY-NGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCR  291 (461)
Q Consensus       216 ~~~~~~---~~~~~~~~y-~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  291 (461)
                      +|+++.   +..+....| +|+++.++|.+||..+.     .|.+.+++.++....  .+.+++++++.+.. ....+..
T Consensus        77 ~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~-----~Plv~e~t~~n~~~~--~~~~~~v~~~~~~~-~~~~~~~  148 (252)
T 2h8l_A           77 LFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENI-----FGICPHMTEDNKDLI--QGKDLLIAYYDVDY-EKNAKGS  148 (252)
T ss_dssp             EECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHS-----SCSSCEECTTTHHHH--SSSSEEEEEECCBT-TTBHHHH
T ss_pred             EEcchhhcccccccccccCCCCcCHHHHHHHHHhcc-----cCCeeecccccHhhh--cCCCeEEEEeecch-hhcchhH
Confidence            999631   112356789 99999999999999988     899999998886654  46677777665432 2234456


Q ss_pred             HHHHHHHHHHHHhccCc--ceEEEecccccchhHHHhhCC--CCCCCccEEEEccCccccccCCCCCCHHH--HHHHHHH
Q psy17502        292 NNYLEILQKLGDKYKQK--VWGWIWSEAVAQPDLENVLEI--GGFGYPAMAVLNAKKMKYSLLKGPFSYDG--INEFLRD  365 (461)
Q Consensus       292 ~~~~~~~~~va~~~~~~--~f~~v~~d~~~~~~~~~~lgl--~~~~~P~l~i~~~~~~k~~~~~~~~~~~~--i~~Fi~~  365 (461)
                      +.++..++++|++|+++  .+.|+++|...+..+++.||+  +..++|+++|++..+.+|.+ .++++.++  |.+|+++
T Consensus       149 ~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~~~ky~~-~~~~t~~~~~i~~F~~~  227 (252)
T 2h8l_A          149 NYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVM-QEEFSRDGKALERFLQD  227 (252)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTTSCEEEC-CSCCCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCcCcEecC-CcccCcchHHHHHHHHH
Confidence            67999999999999976  247888887778889999999  55689999999876678865 57899999  9999999


Q ss_pred             HhcCCCCCCCcCCCCCCC
Q psy17502        366 LSYGRGHTAPVKGAALPQ  383 (461)
Q Consensus       366 ~~~Gkl~~~~~ks~~iP~  383 (461)
                      +++|++ +|++||||+|+
T Consensus       228 ~~~Gkl-~~~~kSe~iPe  244 (252)
T 2h8l_A          228 YFDGNL-KRYLKSEPIPE  244 (252)
T ss_dssp             HHHTCS-CCCC-------
T ss_pred             HHCCCc-cccccCCCCCC
Confidence            999999 59999999995

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.95  E-value=3.7e-26  Score=219.52  Aligned_cols=257  Identities=13%  Similarity=0.194  Sum_probs=201.1

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhh------HHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcc
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLE------PHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIR  209 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~------~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~  209 (461)
                      .+.|+.|+.++|.+.+ +++++++|.|||+||++|....      +.|+++|+.+.+ .+.|+.|||+.++++|++|+|.
T Consensus        12 ~~~v~~lt~~~f~~~i-~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~   90 (367)
T 3us3_A           12 VDRVINVNAKNYKNVF-KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLT   90 (367)
T ss_dssp             CCCCEECCTTTHHHHH-HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCC
T ss_pred             CCccEECCHHHHHHHH-hhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCC
Confidence            3568999999999976 6689999999999999973332      589999999976 5999999999999999999999


Q ss_pred             cccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhc-CCCeEEEEEeCCccccCh
Q psy17502        210 GYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACE-DHPLCIVAVLPHILDCQS  288 (461)
Q Consensus       210 ~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~  288 (461)
                      ++||+++|++|     ....|.|.++.+.|.+|+.++.     .|.+..+++...+..++. .....+++|+..      
T Consensus        91 ~~PTl~~f~~G-----~~~~y~G~~~~~~i~~~i~~~~-----~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~------  154 (367)
T 3us3_A           91 EEDSIYVFKED-----EVIEYDGEFSADTLVEFLLDVL-----EDPVELIEGERELQAFENIEDEIKLIGYFKN------  154 (367)
T ss_dssp             STTEEEEEETT-----EEEECCSCCSHHHHHHHHHHHH-----SCSEEECCSHHHHHHHHHCCSSCEEEEECSC------
T ss_pred             cCceEEEEECC-----cEEEeCCCCCHHHHHHHHHHhc-----CCCcEEcCCHHHHHHHhccCCCcEEEEEECC------
Confidence            99999999987     4568999999999999999987     677889988888888876 556677776542      


Q ss_pred             hhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCC-CCCHHHHHHHHHHHh
Q psy17502        289 SCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKG-PFSYDGINEFLRDLS  367 (461)
Q Consensus       289 ~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~-~~~~~~i~~Fi~~~~  367 (461)
                       ........+.++|..+++.. .|..+.   ...+++.+|++   .|+|+++.........|.| .++.+.|.+||+...
T Consensus       155 -~~~~~~~~f~~~A~~~~~~~-~F~~~~---~~~~~~~~~v~---~p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~  226 (367)
T 3us3_A          155 -KDSEHYKAFKEAAEEFHPYI-PFFATF---DSKVAKKLTLK---LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHR  226 (367)
T ss_dssp             -TTCHHHHHHHHHHHHHTTTS-CEEEEC---CHHHHHHHTCC---TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTC
T ss_pred             -CCchHHHHHHHHHHhhcCCc-EEEEEC---CHHHHHHcCCC---CCeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcC
Confidence             11234567889999998775 343333   35688999997   3999999764444444566 589999999998864


Q ss_pred             cCCCCCCCcCCCCCCCcccccCCCCCCCCCCcccccccCccccCCCCCCcccccchhccC-CccEEEEEecCcchhhhhc
Q psy17502        368 YGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKS-DEVWIVEYYAPWCGHCQSF  446 (461)
Q Consensus       368 ~Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v~~~~~~~~~~~f~~~v~d~-~kdvlv~fyapwC~~Ck~l  446 (461)
                      -     |.     +++                        +..       .|+.++..+. .+..+|.||.++|.+|.++
T Consensus       227 ~-----p~-----v~e------------------------lt~-------~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  265 (367)
T 3us3_A          227 R-----ST-----LRK------------------------LKP-------ESMYETWEDDMDGIHIVAFAEEADPDGYEF  265 (367)
T ss_dssp             S-----CS-----EEE------------------------CCG-------GGHHHHHHSCBTTEEEEEECCTTSHHHHHH
T ss_pred             c-----cc-----eee------------------------cCh-------hhHHHHHhhccCCcEEEEEEcCCChhHHHH
Confidence            1     11     111                        111       3666655443 4467778999999999999


Q ss_pred             hhHHHHHHHHHhh
Q psy17502        447 KDEYMKLATALKV  459 (461)
Q Consensus       447 ~p~~~~la~~~k~  459 (461)
                      .+.++++|+.+++
T Consensus       266 ~~~l~~vA~~~~~  278 (367)
T 3us3_A          266 LEILKSVAQDNTD  278 (367)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999999985

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.95  E-value=4.8e-26  Score=205.58  Aligned_cols=200  Identities=16%  Similarity=0.190  Sum_probs=164.1

Q ss_pred             cchhHHHhcCCCeEEEEEECCC--CHhHHhhHHHHHHHHHH---cCCc--eEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         24 SNFDDKVIKSDEVWIVEYYAPW--CGHCQSFKDEYMKLATA---LKGV--VKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        24 ~~f~~~~~~~~~~~lv~f~~~~--c~~C~~~~~~~~~~a~~---~~~~--v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      +.+.+++-+-.++++|.||++|  |++|+.+.+.+.++|+.   ++++  +.|+.+|+++++++|++|||+++||+.+| 
T Consensus        15 ~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~-   93 (243)
T 2hls_A           15 RELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL-   93 (243)
T ss_dssp             HHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET-
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE-
Confidence            4455523234578999999999  99999999999999987   4444  99999999999999999999999999999 


Q ss_pred             CCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhH
Q psy17502         97 DKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEP  176 (461)
Q Consensus        97 ~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~  176 (461)
                      +|  ..+|.|..+...+..|+.........             ...++.+.++......++++++.||++||++|+.+.+
T Consensus        94 ~g--~~~~~G~~~~~~l~~fv~~~l~~~~~-------------~~~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p  158 (243)
T 2hls_A           94 GG--EVRWTGIPAGEEIRALVEVIMRLSED-------------ESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVL  158 (243)
T ss_dssp             TT--TEEEESCCCTTHHHHHHHHHHHHHTT-------------CCCCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHH
T ss_pred             CC--ceeEcCCCcHHHHHHHHHHHHhccCC-------------CCCCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHH
Confidence            55  77899999999999998876532211             1234555555432234567889999999999999999


Q ss_pred             HHHHHHHHhc----CceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        177 HWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       177 ~~~~~a~~~~----~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      .|.++|..+.    +.+.++.+|++.+++++++|+|.++|++++  +|     . ..|.|.++.++|.+|+.+..
T Consensus       159 ~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G-----~-~~~~G~~~~~~l~~~l~~~~  225 (243)
T 2hls_A          159 LAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NG-----Y-LVFVGVPYEEDFLDYVKSAA  225 (243)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TT-----E-EEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CC-----E-EEEeCCCCHHHHHHHHHHHh
Confidence            9999999883    579999999999999999999999999988  44     2 24899999999999998876

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.93  E-value=5e-24  Score=193.28  Aligned_cols=221  Identities=16%  Similarity=0.312  Sum_probs=165.1

Q ss_pred             cccccCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEec--CCchhhH
Q psy17502          7 SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNA--DEEKSLS   81 (461)
Q Consensus         7 ~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~--~~~~~l~   81 (461)
                      ...++++..+.|..|+.++|++.+.+.+++++|+|||+||++|+++.|.|+++++++++   .+.++.|||  ++++++|
T Consensus         3 ~~~~l~~~~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~   82 (244)
T 3q6o_A            3 HMSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVC   82 (244)
T ss_dssp             ---CCSCTTSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHH
T ss_pred             cccCCCCCCCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHH
Confidence            35677888899999999999996667779999999999999999999999999999986   799999999  6689999


Q ss_pred             hhcCCCCccEEEEEcCCCCCc-----cccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcC-
Q psy17502         82 SSHGVTGFPTVKIFSDKRNPT-----PYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNS-  155 (461)
Q Consensus        82 ~~~~i~~~P~l~~~~~g~~~~-----~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-  155 (461)
                      ++|+|.++||+++|++|+...     .+.| .+.+.|.+++.+.+.....     .++...+++..++.+++..++... 
T Consensus        83 ~~~~v~~~Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~-----~~p~~~p~l~~~~~~~l~~~~~~~~  156 (244)
T 3q6o_A           83 RDFNIPGFPTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHD-----TWPPACPPLEPAXLEEIDGFFARNN  156 (244)
T ss_dssp             HHTTCCSSSEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTT-----SCCTTSCCCSCCCHHHHHTHHHHCC
T ss_pred             HHcCCCccCEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccc-----cCCCCCCCcccccHHHHHHHhhcCC
Confidence            999999999999999754432     5666 6999999999998864321     223333445566777887776443 


Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG  233 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~  233 (461)
                      .+..++.|....|       ....+++..+.  ..+.+..++. .+..++++|||+++|+++++..+    .....++..
T Consensus       157 ~~~~al~f~~~~~-------~~~~~~~~d~~~~~~i~v~~~~~-~~~~l~~~f~v~~~Pslvl~~~~----g~~~~~~~~  224 (244)
T 3q6o_A          157 EEYLALIFEXGGS-------YLAREVALDLSQHKGVAVRRVLN-TEANVVRKFGVTDFPSCYLLFRN----GSVSRVPVL  224 (244)
T ss_dssp             CSEEEEEEECTTC-------CHHHHHHHHTTTCTTEEEEEEET-TCHHHHHHHTCCCSSEEEEEETT----SCEEECCCS
T ss_pred             CceEEEEEEECCc-------chHHHHHHHhccCCceEEEEEeC-chHHHHHHcCCCCCCeEEEEeCC----CCeEeeccc
Confidence            3556666665532       24445555565  4578877753 45789999999999999998876    355566644


Q ss_pred             C-CHHHHHHHHHh
Q psy17502        234 R-TSQDIVTWALN  245 (461)
Q Consensus       234 ~-~~~~i~~fi~~  245 (461)
                      . +.+.+..++.+
T Consensus       225 ~~~r~~~~~~l~~  237 (244)
T 3q6o_A          225 MESRSFYTAYLQR  237 (244)
T ss_dssp             SSSHHHHHHHHHT
T ss_pred             cccHHHHHHHHHh
Confidence            4 44555555543

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.92  E-value=6.2e-24  Score=190.17  Aligned_cols=210  Identities=11%  Similarity=0.146  Sum_probs=171.5

Q ss_pred             ceeEc-ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        139 AVVEL-TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       139 ~v~~l-~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ....+ +.+++++++ +++++++|+||++|   |+...+.|.++|+.+ +.+.|+.+   .++++++++++++ |+|++|
T Consensus        10 ~~~~l~s~~~~~~~l-~~~~v~vVgff~~~---~~~~~~~f~~~A~~l-~~~~F~~t---~~~~v~~~~~v~~-p~i~lf   80 (227)
T 4f9z_D           10 EPTWLTDVPAAMEFI-AATEVAVIGFFQDL---EIPAVPILHSMVQKF-PGVSFGIS---TDSEVLTHYNITG-NTICLF   80 (227)
T ss_dssp             CCEECCSHHHHHHHH-HTSSEEEEEECSCS---CSTHHHHHHHHTTTC-TTSEEEEE---CCHHHHHHTTCCS-SEEEEE
T ss_pred             CCeeeCCHHHHHHHH-hcCCeEEEEEecCC---CchhHHHHHHHHHhC-CCceEEEE---CCHHHHHHcCCCC-CeEEEE
Confidence            34455 668888864 77899999999998   578899999999999 58999985   5778999999997 999999


Q ss_pred             cCCCCCCcCcccccC----CCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHH
Q psy17502        218 SPGSRSASDAQEYNG----GRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNN  293 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g----~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  293 (461)
                      ++..   +....|+|    .++.++|.+||..+.     .|.+.+++.++....+..+.+.++++|..    .+..+.+.
T Consensus        81 k~~~---~~~~~~~~~~~g~~~~~~l~~fi~~~~-----~plv~e~t~~n~~~~~~~~~~~~~l~f~~----~~~~~~~~  148 (227)
T 4f9z_D           81 RLVD---NEQLNLEDEDIESIDATKLSRFIEINS-----LHMVTEYNPVTVIGLFNSVIQIHLLLIMN----KASPEYEE  148 (227)
T ss_dssp             ETTT---TEEEEECHHHHHTCCHHHHHHHHHHHC-----CCSEEECCHHHHHHHHHSSCCEEEEEEEC----TTSTTHHH
T ss_pred             EecC---cccccccccccCCCCHHHHHHHHHHhC-----CCceeecCcccHHHHhccCCceEEEEEEc----CCcchHHH
Confidence            9763   24567774    799999999999987     89999998777666665666777665532    23456788


Q ss_pred             HHHHHHHHHHhccCcceEEEecccc--cchhHHHhhCCCCCCCccEEEEccCcc-ccccCCCCCCHHHHHHHHHHHhcCC
Q psy17502        294 YLEILQKLGDKYKQKVWGWIWSEAV--AQPDLENVLEIGGFGYPAMAVLNAKKM-KYSLLKGPFSYDGINEFLRDLSYGR  370 (461)
Q Consensus       294 ~~~~~~~va~~~~~~~f~~v~~d~~--~~~~~~~~lgl~~~~~P~l~i~~~~~~-k~~~~~~~~~~~~i~~Fi~~~~~Gk  370 (461)
                      ++..++++|++|++++ .|+++|..  .+..+++.||++..++|+++|++..++ +|.+..++++.++|.+|++++++||
T Consensus       149 ~~~~~~~vAk~~k~~i-~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gk  227 (227)
T 4f9z_D          149 NMHRYQKAAKLFQGKI-LFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLSGK  227 (227)
T ss_dssp             HHHHHHHHHHHTTTTC-EEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhCCE-EEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhCCC
Confidence            8999999999999996 66666653  466788999998778999999997764 6777667899999999999999996

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.91  E-value=2.4e-23  Score=201.38  Aligned_cols=253  Identities=17%  Similarity=0.342  Sum_probs=170.4

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc------CceEEEEEeCcccHhhhhhcCcccc
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE------GKVKLGAVDATVHQRIAGEFNIRGY  211 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~------~~i~f~~v~~~~~~~l~~~~~i~~~  211 (461)
                      +.|..++.++|.+.+ .++++++|.||++||++|+.+.|.|.++|+.++      +.+.|+.|||+.+.++|++|+|.++
T Consensus         5 ~~v~~l~~~~f~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~   83 (382)
T 2r2j_A            5 SEITSLDTENIDEIL-NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKY   83 (382)
T ss_dssp             ---CBCCTTTHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEE
T ss_pred             CceEECCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcC
Confidence            458889999999865 567899999999999999999999999999983      4599999999999999999999999


Q ss_pred             cEEEEEcCCCCCCcCcc-cccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhh
Q psy17502        212 PTIKFFSPGSRSASDAQ-EYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSC  290 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~-~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  290 (461)
                      ||+++|++|    .... .|.|.++.+.|.+|+.+..     .|.+..+++...+.. +.....++++++..    .   
T Consensus        84 Pt~~~f~~G----~~~~~~~~G~~~~~~l~~~i~~~~-----~~~v~~l~~~~~l~~-l~~~~~~~v~ff~~----~---  146 (382)
T 2r2j_A           84 PTLKLFRNG----MMMKREYRGQRSVKALADYIRQQK-----SDPIQEIRDLAEITT-LDRSKRNIIGYFEQ----K---  146 (382)
T ss_dssp             SEEEEEETT----EEEEEECCSCCSHHHHHHHHHHHH-----SCCCEEC-------------CCEEEEEESC----S---
T ss_pred             CEEEEEeCC----cEeeeeecCcchHHHHHHHHHHhc-----cCCceecCCHHHHHH-hcCCCCEEEEEECC----C---
Confidence            999999987    2333 5999999999999999987     566777776655655 34455556666542    1   


Q ss_pred             HHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccC-ccccccCCCCC-CHHHHHHHHHHHhc
Q psy17502        291 RNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAK-KMKYSLLKGPF-SYDGINEFLRDLSY  368 (461)
Q Consensus       291 ~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~-~~k~~~~~~~~-~~~~i~~Fi~~~~~  368 (461)
                      .....+.+.++|..+++.. .|.....    ++++.++++  ..| +++.... ......|.|.+ +.++|.+||+....
T Consensus       147 ~~~~~~~f~~~A~~~~~~~-~F~~~~~----~~~~~~~v~--~~p-i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~  218 (382)
T 2r2j_A          147 DSDNYRVFERVANILHDDC-AFLSAFG----DVSKPERYS--GDN-IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCV  218 (382)
T ss_dssp             SSHHHHHHHHHHHHHTTTC-EEEEEES----CC----------CE-EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHS
T ss_pred             CChhHHHHHHHHHHhhccc-eEEEEeh----hhHHhhCCC--CCc-eEECCCCCCCcCcccCCCCCCHHHHHHHHHhccc
Confidence            1123467889999998876 3332222    355678886  568 5444432 22334567888 89999999998762


Q ss_pred             CCCCCCCcCCCCCCCcccccCCCCCCCCCCcccccccCccccCCCCCCcccccchhccCCccEEEEEecCcch-hhhhch
Q psy17502        369 GRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCG-HCQSFK  447 (461)
Q Consensus       369 Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~-~Ck~l~  447 (461)
                      ..          +++                        +..       .|+.++ +++++.++|.|+.+||. .|+.+.
T Consensus       219 p~----------v~e------------------------lt~-------~~~~~~-~~~~~~~~v~f~~~~~~~~~~~~~  256 (382)
T 2r2j_A          219 PL----------VRE------------------------ITF-------ENGEEL-TEEGLPFLILFHMKEDTESLEIFQ  256 (382)
T ss_dssp             CS----------SEE------------------------CCH-------HHHHHH-HTTCCCEEEEEECTTCCHHHHHHH
T ss_pred             Cc----------eEe------------------------cCh-------hhHHHH-hcCCCcEEEEEecCCchHHHHHHH
Confidence            11          111                        111       366664 57788999999999984 455555


Q ss_pred             hHHHHHHHHHh
Q psy17502        448 DEYMKLATALK  458 (461)
Q Consensus       448 p~~~~la~~~k  458 (461)
                      ..+.++|+.++
T Consensus       257 ~~~~~~~~~~~  267 (382)
T 2r2j_A          257 NEVARQLISEK  267 (382)
T ss_dssp             HHHHHHTGGGT
T ss_pred             HHHHHHHHHhC
Confidence            55555554444

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=9.8e-23  Score=189.40  Aligned_cols=220  Identities=27%  Similarity=0.456  Sum_probs=168.9

Q ss_pred             CCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc--ccHhhhhhcCcccc
Q psy17502        134 KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT--VHQRIAGEFNIRGY  211 (461)
Q Consensus       134 ~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~--~~~~l~~~~~i~~~  211 (461)
                      ......++.|+.++|++.+.+.+++++|.||++||++|+.+.|.|.++++.+.+.+.++.++|+  .+.++|++|+|.++
T Consensus        13 ~~~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~   92 (298)
T 3ed3_A           13 YDSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGF   92 (298)
T ss_dssp             CSSCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBS
T ss_pred             CCCCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCcc
Confidence            4456779999999999987667889999999999999999999999999999888999999987  67899999999999


Q ss_pred             cEEEEEcCCCCC-------------CcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcC-CCeEEE
Q psy17502        212 PTIKFFSPGSRS-------------ASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACED-HPLCIV  277 (461)
Q Consensus       212 P~i~~~~~~~~~-------------~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~-~~~~~i  277 (461)
                      |++++|++|...             ......|.|.++.+.|.+|+.++.     .+.+..+.+...+..+... ....++
T Consensus        93 Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~-----~~~v~~i~~~~~l~~~l~~~~~~~vi  167 (298)
T 3ed3_A           93 PTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI-----RSYVKKFVRIDTLGSLLRKSPKLSVV  167 (298)
T ss_dssp             SEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTC-----CCCEEECSCGGGHHHHHTSCSSEEEE
T ss_pred             ceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhc-----ccccEEcCCHHHHHHHHhcCCceEEE
Confidence            999999987300             013578999999999999999887     6778888887777777765 355555


Q ss_pred             EEeCCccccChhhHHHHHHHHHHHHHhccCcc-eEEEecccccchhHH--HhhC-----C-----------CCCCCccEE
Q psy17502        278 AVLPHILDCQSSCRNNYLEILQKLGDKYKQKV-WGWIWSEAVAQPDLE--NVLE-----I-----------GGFGYPAMA  338 (461)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~-f~~v~~d~~~~~~~~--~~lg-----l-----------~~~~~P~l~  338 (461)
                      +|...     .    .....++.+|..|++.. |..+....  ...+.  +.|+     +           .....|+++
T Consensus       168 ~fs~~-----~----~~~~~f~~~A~~~~~~~~F~~v~~~~--~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv  236 (298)
T 3ed3_A          168 LFSKQ-----D----KISPVYKSIALDWLGKFDFYSISNKK--LKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLV  236 (298)
T ss_dssp             EEESS-----S----SCCHHHHHHHHHTBTTEEEEEEEGGG--CCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEE
T ss_pred             EEcCC-----C----cchHHHHHHHHHhhcCcEEEEEcchH--hhhhhhhhhhcccCcchhhhhhcccccccccCCCeEE
Confidence            54221     1    12358999999999987 44443321  11111  2233     1           113689999


Q ss_pred             EEccCccccccCC-CCCCHHHHHHHHHHHhcC
Q psy17502        339 VLNAKKMKYSLLK-GPFSYDGINEFLRDLSYG  369 (461)
Q Consensus       339 i~~~~~~k~~~~~-~~~~~~~i~~Fi~~~~~G  369 (461)
                      +++....++..+. +.++.+.|.+||.+-.+.
T Consensus       237 ~~~~~~~~~~~y~g~~~~~~~i~~fi~~~~~~  268 (298)
T 3ed3_A          237 VFDADKDKFWEYEGNSINKNDISKFLRDTFSI  268 (298)
T ss_dssp             EEETTTTEEEECCCSSCCHHHHHHHHHHHHTC
T ss_pred             EEcCCCCceEEeccccCCHHHHHHHHHhhcCC
Confidence            9988777777777 479999999999976543

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.90  E-value=5.7e-22  Score=198.16  Aligned_cols=253  Identities=27%  Similarity=0.458  Sum_probs=195.5

Q ss_pred             ceeEcChhhhhhhhhcCC---CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        139 AVVELTDSNFEKLVYNSD---DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~---~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      .|..++.++|.+.+ .++   ++++|.||++||++|+.+.|.|.++|+.+.+.+.|+.|||+.+..+|++|+|.++||++
T Consensus         2 ~v~~l~~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~   80 (481)
T 3f8u_A            2 DVLELTDDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLK   80 (481)
T ss_dssp             CCEEECTTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEE
T ss_pred             ceEEecHHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEE
Confidence            47889999999986 555   89999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHH
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYL  295 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  295 (461)
                      +|++|    .....|.|.++.+.|.+|+.+..     .|.+.++.+...+..++......++++++.     .  .....
T Consensus        81 ~~~~g----~~~~~~~G~~~~~~l~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~vv~~~~~-----~--~~~~~  144 (481)
T 3f8u_A           81 IFRDG----EEAGAYDGPRTADGIVSHLKKQA-----GPASVPLRTEEEFKKFISDKDASIVGFFDD-----S--FSEAH  144 (481)
T ss_dssp             EEETT----EEEEECCSCSSHHHHHHHHHHHT-----SCSEEEECSHHHHHHHTTSSSCEEEEEESC-----T--TCHHH
T ss_pred             EEeCC----ceeeeecCccCHHHHHHHHHhhc-----ccCceecCCHHHHHHHHhcCCcEEEEEECC-----C--ccchH
Confidence            99988    45778999999999999999987     677889988888998888888888877643     1  22445


Q ss_pred             HHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccC------ccccccCC-CCCCHHHHHHHHHHHhc
Q psy17502        296 EILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAK------KMKYSLLK-GPFSYDGINEFLRDLSY  368 (461)
Q Consensus       296 ~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~------~~k~~~~~-~~~~~~~i~~Fi~~~~~  368 (461)
                      ..+.++|..+++.. .|..+.   ...+++.+|++.   |.++++.+.      ......+. +.++.+.|.+||+...-
T Consensus       145 ~~f~~~a~~~~~~~-~F~~~~---~~~~~~~~~v~~---~~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~  217 (481)
T 3f8u_A          145 SEFLKAASNLRDNY-RFAHTN---VESLVNEYDDNG---EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIF  217 (481)
T ss_dssp             HHHHHHHHHHTTTS-CEEEEC---CHHHHHHHCSSS---EEEEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccCc-eEEEEC---CHHHHHHhCCCC---CcEEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCC
Confidence            78889999998876 343332   456889999973   337777632      22333455 78999999999998753


Q ss_pred             CCCCCCCcCCCCCCCcccccCCCCCCCCCCcccccccCccccCCCCCCcccccchhccCCccEEEEEecCc-chh---hh
Q psy17502        369 GRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPW-CGH---CQ  444 (461)
Q Consensus       369 Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapw-C~~---Ck  444 (461)
                      .-+          |+                        +..       .|+.++.   +...+|.||..- -..   ++
T Consensus       218 p~v----------~e------------------------~t~-------~n~~~~~---~~~~~v~~~~~~~~~~~~~~~  253 (481)
T 3f8u_A          218 GIC----------PH------------------------MTE-------DNKDLIQ---GKDLLIAYYDVDYEKNAKGSN  253 (481)
T ss_dssp             TTS----------CE------------------------ECT-------TTHHHHT---TSSEEEEEECCCTTTCHHHHH
T ss_pred             CCc----------cc------------------------cCh-------hHHHHhc---CCCceEEEEecccccchhhHH
Confidence            221          21                        111       3666654   355677776532 222   23


Q ss_pred             hchhHHHHHHHHHhh
Q psy17502        445 SFKDEYMKLATALKV  459 (461)
Q Consensus       445 ~l~p~~~~la~~~k~  459 (461)
                      .+...+.++|+.|++
T Consensus       254 ~~~~~~~~vA~~~~~  268 (481)
T 3f8u_A          254 YWRNRVMMVAKKFLD  268 (481)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC
Confidence            367889999999975

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.89  E-value=6.5e-22  Score=196.45  Aligned_cols=222  Identities=15%  Similarity=0.289  Sum_probs=166.9

Q ss_pred             cccccCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCC--chhhH
Q psy17502          7 SVHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADE--EKSLS   81 (461)
Q Consensus         7 ~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~--~~~l~   81 (461)
                      ...++++..+.|.+|+.++|++.+.+.+++++|.|||+||++|+++.|.|+++++++++   .+.|+.|||++  ++++|
T Consensus         3 ~~~~Ly~~~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~   82 (519)
T 3t58_A            3 HMSVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVC   82 (519)
T ss_dssp             --CCSCCTTSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHH
T ss_pred             cccccCCCCCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHH
Confidence            45678888889999999999996667779999999999999999999999999999987   79999999954  88999


Q ss_pred             hhcCCCCccEEEEEcC----CCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcC-C
Q psy17502         82 SSHGVTGFPTVKIFSD----KRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNS-D  156 (461)
Q Consensus        82 ~~~~i~~~P~l~~~~~----g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~  156 (461)
                      ++|+|.++||+++|..    |.....+.|.++.+.+.+++.+.+....     ..++...+++..++.+++.+++... .
T Consensus        83 ~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~-----~~~P~~~p~l~~it~~~l~~~l~~~~~  157 (519)
T 3t58_A           83 REFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR-----DTWPPACPPLEPAKLNDIDGFFTRNKA  157 (519)
T ss_dssp             HHTTCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC-----SCCCTTCCCCSBCCHHHHTTGGGSCCC
T ss_pred             HHcCCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc-----ccCCCCCCccCcCCHHHHHHHhccCCC
Confidence            9999999999999995    3344567888999999999999885432     1223334556667888888776443 3


Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCC
Q psy17502        157 DIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR  234 (461)
Q Consensus       157 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~  234 (461)
                      .+.++.|....       .....+++..+.  ..+.+..++ +.+.+++++|||+++|+++++..++    ....+....
T Consensus       158 ~~vallF~~~~-------s~~~~~~~ldl~~~~~v~v~~v~-~~~~~l~~kfgV~~~Pslvl~~~nG----k~~~~~v~~  225 (519)
T 3t58_A          158 DYLALVFERED-------SYLGREVTLDLSQYHAVAVRRVL-NTESDLVNKFGVTDFPSCYLLLRNG----SVSRVPVLV  225 (519)
T ss_dssp             SEEEEEEECTT-------CCHHHHHHHHTTTCTTEEEEEEE-TTCHHHHHHHTCCCSSEEEEEETTS----CEEECCCSS
T ss_pred             CeEEEEecCCc-------hHHHHHHHHHhhccCCeeEEEec-CchHHHHHHcCCCCCCeEEEEeCCC----ceeeccccc
Confidence            45666666542       235566666666  457777665 3467899999999999999998763    333333322


Q ss_pred             -CHHHHHHHHHh
Q psy17502        235 -TSQDIVTWALN  245 (461)
Q Consensus       235 -~~~~i~~fi~~  245 (461)
                       ....+..++..
T Consensus       226 ~~r~~~~~~l~~  237 (519)
T 3t58_A          226 ESRSFYTSYLRG  237 (519)
T ss_dssp             CSHHHHHHHHTT
T ss_pred             ccHHHHHHHHHH
Confidence             22445566543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.89  E-value=1.8e-21  Score=176.32  Aligned_cols=216  Identities=29%  Similarity=0.566  Sum_probs=168.0

Q ss_pred             CCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc---eEEEEEeCcccHhhhhhcCccccc
Q psy17502        136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKLGAVDATVHQRIAGEFNIRGYP  212 (461)
Q Consensus       136 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~---i~f~~v~~~~~~~l~~~~~i~~~P  212 (461)
                      ....+..++.++|++.+ ..+++++|.||++||++|+.+.+.|.++++.+++.   +.|+.+|++.+.+++++|+|.++|
T Consensus        13 ~~~~v~~l~~~~~~~~~-~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P   91 (241)
T 3idv_A           13 EENGVLVLNDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYP   91 (241)
T ss_dssp             EETTEEEECTTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSS
T ss_pred             cCCCcEEecccCHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCC
Confidence            34568999999999875 67789999999999999999999999999999865   999999999999999999999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCC-CC-cceeecCHHHHHHHhcCCCeEEEEEe-CCccccChh
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVP-PP-EIKQIVSEATFKEACEDHPLCIVAVL-PHILDCQSS  289 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~-~p-~v~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~  289 (461)
                      ++++|++|     ....|.|.++.++|.+|+.+....... .| .+..++. ..+.........+++.|. ++     ..
T Consensus        92 t~~~~~~g-----~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~f~a~w-----C~  160 (241)
T 3idv_A           92 TIKILKKG-----QAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTK-ENFDEVVNDADIILVEFYAPW-----CG  160 (241)
T ss_dssp             EEEEEETT-----EEEECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCT-TTHHHHHHHCSEEEEEEECTT-----CT
T ss_pred             EEEEEcCC-----CcccccCcccHHHHHHHHhhccCcccccccccceeccH-HHHHHhhccCCeEEEEEECCC-----CH
Confidence            99999887     445799999999999999987643221 22 2344443 444444444445555443 33     33


Q ss_pred             hHHHHHHHHHHHHHhccCcc--eEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHHHh
Q psy17502        290 CRNNYLEILQKLGDKYKQKV--WGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLS  367 (461)
Q Consensus       290 ~~~~~~~~~~~va~~~~~~~--f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~  367 (461)
                      ........+.++|..++++.  +.++.+|.+..+++++.||+.  .+|++++++..+  ...+.|..+.+.|.+|+++..
T Consensus       161 ~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~--~~Pt~~~~~~g~--~~~~~g~~~~~~l~~~l~~~~  236 (241)
T 3idv_A          161 HCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVS--GYPTLKIFRKGR--PYDYNGPREKYGIVDYMIEQS  236 (241)
T ss_dssp             GGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCC--SSSEEEEEETTE--EEECCSCCSHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCc--ccCEEEEEECCe--EEEecCCCCHHHHHHHHHhhh
Confidence            34556677888998887652  467777766788999999998  689999997432  223688999999999999876

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.88  E-value=1.2e-21  Score=196.76  Aligned_cols=249  Identities=23%  Similarity=0.406  Sum_probs=188.7

Q ss_pred             CCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcccHhhhhhcCcccccE
Q psy17502        135 GSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       135 ~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~~~~l~~~~~i~~~P~  213 (461)
                      .....|..++.++|.+.+ +++++++|.||++||++|+.+.|.|.++|+.+++. +.|+.|||+.+..+|++|+|.++||
T Consensus        11 ~~~~~v~~l~~~~f~~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt   89 (504)
T 2b5e_A           11 PEDSAVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPS   89 (504)
T ss_dssp             CTTSSCEECCTTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCCCcEECCHHHHHHHH-hcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCE
Confidence            345678999999999975 67889999999999999999999999999999884 9999999999999999999999999


Q ss_pred             EEEEcCCCCCCcC--cccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHhcCCC--eEEEEEeCCccccChh
Q psy17502        214 IKFFSPGSRSASD--AQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEACEDHP--LCIVAVLPHILDCQSS  289 (461)
Q Consensus       214 i~~~~~~~~~~~~--~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~  289 (461)
                      +++|++|    ..  ...|.|.++.+.|.+|+.+..     .|.+..+++   +..+.....  ..+++++..       
T Consensus        90 ~~~~~~g----~~~~~~~~~G~~~~~~l~~~l~~~~-----~~~v~~i~~---~~~~~~~~~~~~~~v~~f~~-------  150 (504)
T 2b5e_A           90 LKIFKNS----DVNNSIDYEGPRTAEAIVQFMIKQS-----QPAVAVVAD---LPAYLANETFVTPVIVQSGK-------  150 (504)
T ss_dssp             EEEEETT----CTTCEEECCSCCSHHHHHHHHHHHT-----SCSEEECSC---HHHHHHHSCCSSCEEEEEES-------
T ss_pred             EEEEeCC----ccccceeecCCCCHHHHHHHHHHhc-----CCcceeHHH---HHHHHhcCCCceEEEEEeCC-------
Confidence            9999988    33  778999999999999999987     677888877   555554444  445554432       


Q ss_pred             hHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCC-C---CHHHHHHHHHH
Q psy17502        290 CRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGP-F---SYDGINEFLRD  365 (461)
Q Consensus       290 ~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~-~---~~~~i~~Fi~~  365 (461)
                      ........+..+|..+++.. .|..++     ++++.+|++      +++++..+ ....+.|. +   +.+.|.+||..
T Consensus       151 ~~~~~~~~f~~~A~~~~~~~-~F~~~~-----~~~~~~~~~------i~l~~~~~-~~~~~~g~~~~~~~~~~l~~fi~~  217 (504)
T 2b5e_A          151 IDADFNATFYSMANKHFNDY-DFVSAE-----NADDDFKLS------IYLPSAMD-EPVVYNGKKADIADADVFEKWLQV  217 (504)
T ss_dssp             CCHHHHHHHHHHHHHTTTTC-EEEEEE-----CTTSCCEEE------EEETTEEE-EEEECCSCHHHHTSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHhhcCc-EEEEEH-----HHHHhcCCe------EEecCCCC-cccccCCcccccCCHHHHHHHHHh
Confidence            12234568999999998876 333332     345556653      55655433 44456777 6   99999999988


Q ss_pred             HhcCCCCCCCcCCCCCCCcccccCCCCCCCCCCcccccccCccccCCCCCCcccccchhccCCccEEEEEecCcchhhhh
Q psy17502        366 LSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQS  445 (461)
Q Consensus       366 ~~~Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~~~~~~~~v~~~~~~~~~~~f~~~v~d~~kdvlv~fyapwC~~Ck~  445 (461)
                      .....+          ++                        +..       .|++++ ++.+..+++.|+.+-... +.
T Consensus       218 ~~~p~v----------~~------------------------~t~-------~~~~~~-~~~~~~~~~l~~~~~~~~-~~  254 (504)
T 2b5e_A          218 EALPYF----------GE------------------------IDG-------SVFAQY-VESGLPLGYLFYNDEEEL-EE  254 (504)
T ss_dssp             HSSCSS----------CB------------------------CCH-------HHHHHH-HHTTSCEEEEEESSHHHH-HH
T ss_pred             cccCCc----------cc------------------------CCH-------hHHHHH-hcCCCcEEEEEecCcccH-HH
Confidence            652211          21                        111       366665 467788888888765444 78


Q ss_pred             chhHHHHHHHHHhh
Q psy17502        446 FKDEYMKLATALKV  459 (461)
Q Consensus       446 l~p~~~~la~~~k~  459 (461)
                      +.+.+.++|+.+++
T Consensus       255 ~~~~l~~~a~~~~~  268 (504)
T 2b5e_A          255 YKPLFTELAKKNRG  268 (504)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999999874

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.87  E-value=1.2e-21  Score=158.79  Aligned_cols=113  Identities=20%  Similarity=0.341  Sum_probs=96.9

Q ss_pred             ccccCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC-----CceEEEEEecCCchhhHh
Q psy17502          8 VHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK-----GVVKVGAVNADEEKSLSS   82 (461)
Q Consensus         8 ~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~-----~~v~~~~vd~~~~~~l~~   82 (461)
                      ..+.+...+.|.+|+.++|++.+.+.+++++|+||++||++|+.+.|.|+++++.+.     +++.++.|||++++++|+
T Consensus         7 ~~~~~~~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~   86 (127)
T 3h79_A            7 VANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIE   86 (127)
T ss_dssp             ------CCCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHH
T ss_pred             CCCCcCCCCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHH
Confidence            345566778899999999999444578999999999999999999999999998763     469999999999999999


Q ss_pred             hcCCCCccEEEEEcCCCCC--ccccCCcchhHHHHHHHHH
Q psy17502         83 SHGVTGFPTVKIFSDKRNP--TPYQGARTADAIIDVALEA  120 (461)
Q Consensus        83 ~~~i~~~P~l~~~~~g~~~--~~y~g~~~~~~i~~~i~~~  120 (461)
                      +|+|+++||+++|++|+..  ..|.|.++.+.|.+|+.+.
T Consensus        87 ~~~v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           87 RMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             HTTCCSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             hcCCccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            9999999999999987654  5899999999999999864

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.85  E-value=5e-21  Score=148.64  Aligned_cols=101  Identities=17%  Similarity=0.478  Sum_probs=88.1

Q ss_pred             ceEcC-ccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         18 VIKLT-TSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        18 v~~l~-~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      |.+++ .++|++.+.+ ++++++|.|||+||++|+.+.|.|+++++.+.+ +.|++||++++++++++|+|+++||+++|
T Consensus         2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~~l~~~~~V~~~PT~~~~   80 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD-VVFLKVDVDECEDIAQDNQIACMPTFLFM   80 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC-eEEEEEecccCHHHHHHcCCCeecEEEEE
Confidence            44554 4789983333 467999999999999999999999999998865 89999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      ++|+.+.++.| .+.++|.++|.++
T Consensus        81 ~~G~~v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           81 KNGQKLDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             ETTEEEEEEES-CCHHHHHHHHHHH
T ss_pred             ECCEEEEEEeC-cCHHHHHHHHHhc
Confidence            99988888999 4788999998764

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.84  E-value=2.1e-20  Score=152.08  Aligned_cols=116  Identities=60%  Similarity=1.032  Sum_probs=105.7

Q ss_pred             ccccCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCC
Q psy17502          8 VHCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVT   87 (461)
Q Consensus         8 ~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~   87 (461)
                      ...++...+.|..|+.++|++.+.+++++++|+||++||++|+.+.|.|+++++++++.+.++.||++++++++++|+|+
T Consensus         9 ~~~l~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~   88 (130)
T 2dml_A            9 VSGLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQ   88 (130)
T ss_dssp             CCCSSCTTSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCC
T ss_pred             cccccCCCCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCC
Confidence            44667777889999999999956677889999999999999999999999999999888999999999999999999999


Q ss_pred             CccEEEEEcCCCC-CccccCCcchhHHHHHHHHHHhh
Q psy17502         88 GFPTVKIFSDKRN-PTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        88 ~~P~l~~~~~g~~-~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      ++||+++|++|+. ..+|.|..+.+.+.+|+.+.+..
T Consensus        89 ~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~~  125 (130)
T 2dml_A           89 GFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRS  125 (130)
T ss_dssp             SSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHHH
T ss_pred             ccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHhc
Confidence            9999999997766 78899999999999999988743

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1.8e-20  Score=153.08  Aligned_cols=112  Identities=44%  Similarity=0.869  Sum_probs=103.0

Q ss_pred             CCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC----CceEEEEEecCCchhhHhhcCCCC
Q psy17502         13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK----GVVKVGAVNADEEKSLSSSHGVTG   88 (461)
Q Consensus        13 ~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~----~~v~~~~vd~~~~~~l~~~~~i~~   88 (461)
                      +..+.|..|++++|++.+.+.+++++|+||++||++|+.+.|.|.+++++++    +++.|+.||++++++++++|+|++
T Consensus         4 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~   83 (133)
T 1x5d_A            4 GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRG   83 (133)
T ss_dssp             SSCCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCS
T ss_pred             CCCCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCe
Confidence            4467799999999999555778899999999999999999999999999987    679999999999999999999999


Q ss_pred             ccEEEEEcCCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         89 FPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        89 ~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      +|++++|++|+...+|.|.++.+.+.+|+.+.+...
T Consensus        84 ~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~~~  119 (133)
T 1x5d_A           84 FPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDN  119 (133)
T ss_dssp             SSEEEEEETTEEEEEECSCCSHHHHHHHHHHHHHHH
T ss_pred             eCeEEEEeCCCceEEecCCCCHHHHHHHHHHHhhcc
Confidence            999999998877888999999999999999988654

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.84  E-value=1.4e-20  Score=148.43  Aligned_cols=108  Identities=19%  Similarity=0.297  Sum_probs=100.3

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      ...+.+|+.++|.+.+.+++++++|+||++||++|+.+.|.++++++.+++++.|+.||++++++++++|+|.++|++++
T Consensus         3 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   82 (111)
T 3gnj_A            3 AMSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILY   82 (111)
T ss_dssp             CCCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEE
T ss_pred             CCcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEE
Confidence            45689999999999444788999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      |++|+.+.++.|..+.+.+.+|+.+.+.
T Consensus        83 ~~~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           83 FKDGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence            9998888899999999999999998763

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.84  E-value=2.9e-19  Score=159.73  Aligned_cols=207  Identities=13%  Similarity=0.140  Sum_probs=167.2

Q ss_pred             CCCCceEcC-ccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         14 SYSDVIKLT-TSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        14 ~~~~v~~l~-~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      .+..+..|+ .+++++ +++.++.++|.|+++||   ....++|.++|+.+ ..+.|+.+.   ++++|+++++++ |+|
T Consensus         7 ~~~~~~~l~s~~~~~~-~l~~~~v~vVgff~~~~---~~~~~~f~~~A~~l-~~~~F~~t~---~~~v~~~~~v~~-p~i   77 (227)
T 4f9z_D            7 AAQEPTWLTDVPAAME-FIAATEVAVIGFFQDLE---IPAVPILHSMVQKF-PGVSFGIST---DSEVLTHYNITG-NTI   77 (227)
T ss_dssp             --CCCEECCSHHHHHH-HHHTSSEEEEEECSCSC---STHHHHHHHHTTTC-TTSEEEEEC---CHHHHHHTTCCS-SEE
T ss_pred             CcCCCeeeCCHHHHHH-HHhcCCeEEEEEecCCC---chhHHHHHHHHHhC-CCceEEEEC---CHHHHHHcCCCC-CeE
Confidence            356677884 489998 88899999999999985   67889999999999 479998754   789999999998 999


Q ss_pred             EEEcCCC-CCccccC----CcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCC
Q psy17502         93 KIFSDKR-NPTPYQG----ARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPW  167 (461)
Q Consensus        93 ~~~~~g~-~~~~y~g----~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~  167 (461)
                      ++|+.+. ....|.|    .++.++|.+|+.....               +.|..+|.+++.+.+.......++.|..+|
T Consensus        78 ~lfk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~---------------plv~e~t~~n~~~~~~~~~~~~~l~f~~~~  142 (227)
T 4f9z_D           78 CLFRLVDNEQLNLEDEDIESIDATKLSRFIEINSL---------------HMVTEYNPVTVIGLFNSVIQIHLLLIMNKA  142 (227)
T ss_dssp             EEEETTTTEEEEECHHHHHTCCHHHHHHHHHHHCC---------------CSEEECCHHHHHHHHHSSCCEEEEEEECTT
T ss_pred             EEEEecCcccccccccccCCCCHHHHHHHHHHhCC---------------CceeecCcccHHHHhccCCceEEEEEEcCC
Confidence            9999542 3456774    7899999999999852               457899999998876444455556677889


Q ss_pred             ChhhhhhhHHHHHHHHHhcCceEEEEEeCc--ccHhhhhhcCcc--cccEEEEEcCCCCCCcCcccc-cCCCCHHHHHHH
Q psy17502        168 CGHCKNLEPHWEKAASELEGKVKLGAVDAT--VHQRIAGEFNIR--GYPTIKFFSPGSRSASDAQEY-NGGRTSQDIVTW  242 (461)
Q Consensus       168 c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~--~~~~l~~~~~i~--~~P~i~~~~~~~~~~~~~~~y-~g~~~~~~i~~f  242 (461)
                      |.+|..+.+.|.++|+.+++++.|+.+|++  ....+++.||+.  .+|++.++...+   .....+ .|..+.++|.+|
T Consensus       143 ~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~---~~ky~~~~~~~t~~~i~~F  219 (227)
T 4f9z_D          143 SPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLD---DEWDTLPTAEVSVEHVQNF  219 (227)
T ss_dssp             STTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSS---CCEEEETTCCCCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCC---CccccCCcCCCCHHHHHHH
Confidence            999999999999999999999999999986  356788999998  789999998642   122333 377999999999


Q ss_pred             HHhhc
Q psy17502        243 ALNKY  247 (461)
Q Consensus       243 i~~~~  247 (461)
                      +....
T Consensus       220 v~~~~  224 (227)
T 4f9z_D          220 CDGFL  224 (227)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98654

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.83  E-value=1.5e-20  Score=150.00  Aligned_cols=109  Identities=13%  Similarity=0.161  Sum_probs=98.4

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCC--HhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWC--GHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c--~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      ......+|+++|++.+.+..++++|.|||+||  ++|+.+.|.++++++++.+++.+++||.+++++++.+|+|+++|||
T Consensus        14 ~~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTl   93 (137)
T 2qsi_A           14 PNAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSL   93 (137)
T ss_dssp             ---CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEE
T ss_pred             hcCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEE
Confidence            45677999999999554444599999999999  9999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCCccccCCcchhHHHHHHHHHHhh
Q psy17502         93 KIFSDKRNPTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      ++|++|+.+.+..|..+.+.+.+++.+.+..
T Consensus        94 ilFkdG~~v~~~vG~~~k~~l~~~l~~~l~~  124 (137)
T 2qsi_A           94 AVVQPERTLGVIAKIQDWSSYLAQIGAMLAE  124 (137)
T ss_dssp             EEEECCEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            9999999999999999999999999987743

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.83  E-value=3.7e-20  Score=145.27  Aligned_cols=106  Identities=25%  Similarity=0.532  Sum_probs=98.6

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      +.|++++.++|++.+++++++++|+||++||++|+.+.|.+.++++++++++.++.||++++++++++|+|.++|++++|
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEE
Confidence            57899999999975667888999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++|+...++.|..+.+.+.+|+.+.+
T Consensus        82 ~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           82 KNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            98887788999999999999998764

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.82  E-value=5.2e-20  Score=151.67  Aligned_cols=111  Identities=19%  Similarity=0.330  Sum_probs=103.1

Q ss_pred             CCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ..+.|..|++++|.+.+++++++++|+||++||++|+.+.|.|.++++++++++.|+.||++++++++++|+|.++||++
T Consensus         4 ~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   83 (140)
T 3hz4_A            4 NGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFK   83 (140)
T ss_dssp             CTTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEE
T ss_pred             CCcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEE
Confidence            35679999999999657888999999999999999999999999999999988999999999999999999999999999


Q ss_pred             EEcCCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         94 IFSDKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        94 ~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      +|++|+.+.++.|..+.+.|.+|+.+.+...
T Consensus        84 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~  114 (140)
T 3hz4_A           84 FFCHGRPVWEQVGQIYPSILKNAVRDMLQHG  114 (140)
T ss_dssp             EEETTEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEeCCcEEEEEcCCCCHHHHHHHHHHHhccc
Confidence            9999988889999999999999999887543

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.82  E-value=6.3e-20  Score=144.16  Aligned_cols=106  Identities=27%  Similarity=0.512  Sum_probs=99.7

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      .+.+..++.++|++ +++++++++|+||++||++|+.+.|.+.++++.+++++.++.||++++++++++|+|.++|++++
T Consensus         3 ~~~v~~l~~~~~~~-~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~   81 (109)
T 3tco_A            3 EDVTLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLI   81 (109)
T ss_dssp             CCCCEECCTTTHHH-HHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CCeEEEecHHHHHH-HHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEE
Confidence            45789999999999 77889999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |++|+...++.|..+.+.+.+++.+.+
T Consensus        82 ~~~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           82 FVNGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence            999988888999999999999998764

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.82  E-value=1e-20  Score=151.58  Aligned_cols=105  Identities=11%  Similarity=0.136  Sum_probs=99.2

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCC--CHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPW--CGHCQSFKDEYMKLATALKGV-VKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~--c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      .+..+|+++|++ .+.+++++||.||++|  |++|+.+.|.++++++++.++ +.|++||.+++++++.+|||+++|||+
T Consensus        18 g~~~~t~~~F~~-~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTli   96 (140)
T 2qgv_A           18 GWTPVSESRLDD-WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATL   96 (140)
T ss_dssp             TCEECCHHHHHH-HHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEE
T ss_pred             CCccCCHHHHHH-HHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            678999999999 5567789999999999  999999999999999999999 999999999999999999999999999


Q ss_pred             EEcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         94 IFSDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        94 ~~~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      +|++|+.+.+..|..+.+.+.+|+.+.+.
T Consensus        97 lFk~G~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           97 VFTGGNYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEECCEEEEEEecCCCHHHHHHHHHHHhc
Confidence            99999999999999999999999998773

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.82  E-value=7.6e-20  Score=143.19  Aligned_cols=105  Identities=23%  Similarity=0.446  Sum_probs=97.4

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      +.|+++++++|.+.+.+++++++|+||++||++|+.+.|.+.++++++++++.++.||++++++++++|+|.++|++++|
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLV   81 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEE
Confidence            57899999999985567888999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      ++|+...++.|..+.+.+.+|+.+.
T Consensus        82 ~~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           82 RDGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             eCCEEEEEecCCCCHHHHHHHHHhc
Confidence            9888788899999999999999763

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.82  E-value=8.2e-20  Score=147.81  Aligned_cols=109  Identities=13%  Similarity=0.199  Sum_probs=96.8

Q ss_pred             ceEcCc-cchhHHHh-cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         18 VIKLTT-SNFDDKVI-KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        18 v~~l~~-~~f~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      +..|+. ++|++.++ +++++++|.|||+||++|+.+.|.++++|+++.+++.|++||++++++++++|+|+..||+++|
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF  102 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF  102 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence            666765 78988555 4778999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCC--c-------cccCCcc-hhHHHHHHHHHHhhhhc
Q psy17502         96 SDKRNP--T-------PYQGART-ADAIIDVALEAIRQKVK  126 (461)
Q Consensus        96 ~~g~~~--~-------~y~g~~~-~~~i~~~i~~~~~~~~~  126 (461)
                      ++|+.+  .       +..|... .++|.+++....+...+
T Consensus       103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~~  143 (160)
T 2av4_A          103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARK  143 (160)
T ss_dssp             ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHHT
T ss_pred             ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhhc
Confidence            998776  3       7889877 88999999988866654

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.81  E-value=1e-19  Score=147.20  Aligned_cols=107  Identities=23%  Similarity=0.487  Sum_probs=99.1

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      .+.|+.|+.++|++.+++.+++++|+||++||++|+.+.|.|+++++.+++++.|+.||++++++++++|+|.++|++++
T Consensus        21 ~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  100 (128)
T 2o8v_B           21 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL  100 (128)
T ss_dssp             CCCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEE
T ss_pred             ccccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEE
Confidence            45699999999997566788999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |++|+...++.|..+.+.+.+|+.+.+
T Consensus       101 ~~~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B          101 FKNGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            998877788999999999999998764

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.81  E-value=1.1e-19  Score=149.83  Aligned_cols=109  Identities=34%  Similarity=0.698  Sum_probs=100.6

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc---eEEEEEecCCchhhHhhcCCCCccE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV---VKVGAVNADEEKSLSSSHGVTGFPT   91 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~---v~~~~vd~~~~~~l~~~~~i~~~P~   91 (461)
                      .+.|..|+.++|++ +++++++++|+||++||++|+.+.|.|.++++.+.++   +.++.||++++++++++|+|.++|+
T Consensus        16 ~~~v~~l~~~~~~~-~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   94 (140)
T 2dj1_A           16 ENGVWVLNDGNFDN-FVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPT   94 (140)
T ss_dssp             ETTEEECCTTTHHH-HHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSE
T ss_pred             CCCCEEcChHhHHH-HHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCe
Confidence            46799999999999 7788899999999999999999999999999998765   9999999999999999999999999


Q ss_pred             EEEEcCCCCCccccCCcchhHHHHHHHHHHhhhh
Q psy17502         92 VKIFSDKRNPTPYQGARTADAIIDVALEAIRQKV  125 (461)
Q Consensus        92 l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~  125 (461)
                      +++|++|+ ..+|.|..+.+.|.+|+.+.+....
T Consensus        95 ~~~~~~G~-~~~~~g~~~~~~l~~~l~~~~~~~~  127 (140)
T 2dj1_A           95 IKILKKGQ-AVDYDGSRTQEEIVAKVREVSQPDW  127 (140)
T ss_dssp             EEEEETTE-EEECCSCCCHHHHHHHHHHHHSSSC
T ss_pred             EEEEECCc-EEEcCCCCCHHHHHHHHHHhcCCCC
Confidence            99999887 7889999999999999999885443

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.81  E-value=1.7e-19  Score=151.54  Aligned_cols=107  Identities=16%  Similarity=0.260  Sum_probs=94.5

Q ss_pred             CCCceEcCccchhHHHhcC--CCeEEEEEEC-------CCCHhHHhhHHHHHHHHHHcC-----CceEEEEEecCCchhh
Q psy17502         15 YSDVIKLTTSNFDDKVIKS--DEVWIVEYYA-------PWCGHCQSFKDEYMKLATALK-----GVVKVGAVNADEEKSL   80 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~--~~~~lv~f~~-------~~c~~C~~~~~~~~~~a~~~~-----~~v~~~~vd~~~~~~l   80 (461)
                      ++.|++||+++|++ ++..  +.+++|.|||       +||++|+.+.|.|+++|+++.     +++.|++||+++++++
T Consensus        17 ~~~vi~lt~~nF~~-~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~l   95 (178)
T 3ga4_A           17 DTGVITVTADNYPL-LSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQL   95 (178)
T ss_dssp             TTSEEECCTTTHHH-HTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHH
T ss_pred             cCCCEECCHHHHHH-HHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHH
Confidence            56799999999999 5543  4589999999       499999999999999999997     7899999999999999


Q ss_pred             HhhcCCCCccEEEEEcCCCCCc------------cc---cC-CcchhHHHHHHHHHHh
Q psy17502         81 SSSHGVTGFPTVKIFSDKRNPT------------PY---QG-ARTADAIIDVALEAIR  122 (461)
Q Consensus        81 ~~~~~i~~~P~l~~~~~g~~~~------------~y---~g-~~~~~~i~~~i~~~~~  122 (461)
                      +++|||+++|||++|++|+...            .|   .| .++++.|.+||.+.+.
T Consensus        96 a~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~  153 (178)
T 3ga4_A           96 VKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILN  153 (178)
T ss_dssp             HHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcC
Confidence            9999999999999999775433            34   35 8999999999999885

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.81  E-value=8.9e-20  Score=142.54  Aligned_cols=103  Identities=22%  Similarity=0.427  Sum_probs=96.5

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ..+.++++++|++ .+ ++++++|+||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|+++|++++|
T Consensus         3 ~~v~~l~~~~~~~-~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 3die_A            3 MAIVKVTDADFDS-KV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVF   80 (106)
T ss_dssp             CCCEECCTTTHHH-HS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEE
T ss_pred             cceEECCHHHHHH-Hh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEE
Confidence            4689999999999 66 888999999999999999999999999999998899999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      ++|+...++.|..+.+.+.+++.+.
T Consensus        81 ~~G~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           81 KDGQPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             eCCeEEEEEeCCCCHHHHHHHHHHh
Confidence            9988888999999999999998753

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.81  E-value=1e-19  Score=145.45  Aligned_cols=109  Identities=21%  Similarity=0.401  Sum_probs=100.6

Q ss_pred             CCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        13 ~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      +..+.+..+++++|.+.+++.+++++|+||++||++|+.+.|.+.++++++.+++.++.||++++++++++|+|.++|++
T Consensus        10 ~~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~   89 (119)
T 1w4v_A           10 HGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV   89 (119)
T ss_dssp             CCCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             CCceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEE
Confidence            45678999999999996667888999999999999999999999999999988899999999999999999999999999


Q ss_pred             EEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         93 KIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++|++|+...++.|..+.+.+.+|+.+.+
T Consensus        90 ~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           90 LAMKNGDVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            99998877788999999999999998764

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.81  E-value=1.2e-19  Score=143.07  Aligned_cols=104  Identities=31%  Similarity=0.639  Sum_probs=95.8

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC---CceEEEEEecCCchhhHhhcCCCCccE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK---GVVKVGAVNADEEKSLSSSHGVTGFPT   91 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~---~~v~~~~vd~~~~~~l~~~~~i~~~P~   91 (461)
                      .+.+..||+++|++ .+. +++++|+||++||++|+.+.|.|.++++++.   ..+.++.||++++++++++|+|.++|+
T Consensus         4 ~~~v~~l~~~~~~~-~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt   81 (111)
T 3uvt_A            4 GSTVLALTENNFDD-TIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPT   81 (111)
T ss_dssp             -CCSEECCTTTHHH-HHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCcceEcChhhHHH-Hhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccE
Confidence            56799999999999 665 7799999999999999999999999999875   359999999999999999999999999


Q ss_pred             EEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         92 VKIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        92 l~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +++|++|+...++.|..+.+.|.+|+.++
T Consensus        82 ~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           82 LLLFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             EEEEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            99999998888999999999999999875

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.81  E-value=1.6e-19  Score=142.72  Aligned_cols=106  Identities=23%  Similarity=0.494  Sum_probs=98.4

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ..|..+++++|.+.+++++++++|.||++||++|+.+.|.+.++++++++++.++.||++++++++++|+|.++||+++|
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   84 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVY   84 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEE
Confidence            45899999999985667788999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++|+...++.|..+.+.+.+++.+.+
T Consensus        85 ~~G~~~~~~~G~~~~~~l~~~l~~~l  110 (112)
T 1t00_A           85 QGGEVAKTIVGAKPKAAIVRDLEDFI  110 (112)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred             eCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            99887788999999999999998765

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.81  E-value=9.2e-20  Score=144.92  Aligned_cols=107  Identities=20%  Similarity=0.343  Sum_probs=95.3

Q ss_pred             cCCCCCCceEcCccchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCC
Q psy17502         11 LYPSYSDVIKLTTSNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTG   88 (461)
Q Consensus        11 ~~~~~~~v~~l~~~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~   88 (461)
                      ..+..+.....+.++|++ +++  ++++++|+||++||++|+.+.|.|+++++++++ +.|+.||++++++++++|+|.+
T Consensus         7 ~~~~~~~~~~~t~~~f~~-~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~   84 (116)
T 3qfa_C            7 HHHHGSVKQIESKTAFQE-ALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKS   84 (116)
T ss_dssp             -----CCBCCCCHHHHHH-HHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTHHHHHHTTCCS
T ss_pred             cccCCcccCCCCHHHHHH-HHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCcc
Confidence            344556788899999999 776  789999999999999999999999999999877 9999999999999999999999


Q ss_pred             ccEEEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         89 FPTVKIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        89 ~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +|++++|++|+.+.++.|. +.+.|.+++.+.
T Consensus        85 ~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           85 MPTFQFFKKGQKVGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             SSEEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred             ccEEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence            9999999999888889999 999999999865

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.81  E-value=7.9e-20  Score=144.40  Aligned_cols=102  Identities=21%  Similarity=0.450  Sum_probs=95.9

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcC
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD   97 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~   97 (461)
                      +++|++++|++ .+ ++++++|+||++||++|+.+.|.+.++++++++++.++.||++++++++++|+|.++|++++|++
T Consensus         3 v~~l~~~~~~~-~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   80 (112)
T 2voc_A            3 IVKATDQSFSA-ET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKD   80 (112)
T ss_dssp             CEECCTTTHHH-HH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEET
T ss_pred             eEEecHHHHHH-Hh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeC
Confidence            67899999999 55 88899999999999999999999999999998889999999999999999999999999999998


Q ss_pred             CCCCccccCCcchhHHHHHHHHHH
Q psy17502         98 KRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        98 g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |+...++.|..+.+.+.+|+.+..
T Consensus        81 G~~~~~~~G~~~~~~l~~~l~~~~  104 (112)
T 2voc_A           81 GEVVETSVGFKPKEALQELVNKHL  104 (112)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHTTS
T ss_pred             CEEEEEEeCCCCHHHHHHHHHHHH
Confidence            887888999999999999998765

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.80  E-value=2.4e-19  Score=142.31  Aligned_cols=107  Identities=21%  Similarity=0.409  Sum_probs=99.3

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      .+.|.+++.++|.+.++..+++++|+||++||++|+.+.|.|+++++.+++++.++.||++++++++++|+|.++|++++
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~   85 (115)
T 1thx_A            6 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRL   85 (115)
T ss_dssp             CCSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEE
T ss_pred             cCceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEE
Confidence            45699999999998556788899999999999999999999999999998889999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |++|+...++.|..+.+.+.+|+.+.+
T Consensus        86 ~~~G~~~~~~~g~~~~~~l~~~l~~~l  112 (115)
T 1thx_A           86 VKGEQILDSTEGVISKDKLLSFLDTHL  112 (115)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence            998887788999999999999998875

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.80  E-value=2.1e-19  Score=140.64  Aligned_cols=105  Identities=23%  Similarity=0.469  Sum_probs=96.9

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      .|.++|+++|.+.+.+++++++|.||++||++|+.+.|.+.++++++++++.++.||++++++++++|+|.++|++++|+
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   81 (107)
T 1dby_A            2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK   81 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEES
T ss_pred             ccEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEe
Confidence            37889999999955677889999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         97 DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        97 ~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +|+...++.|..+.+.+.+++.+.+
T Consensus        82 ~G~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           82 GGKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             CCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            9888888999999999999998753

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.80  E-value=1.1e-19  Score=141.72  Aligned_cols=102  Identities=25%  Similarity=0.499  Sum_probs=95.0

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcC
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD   97 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~   97 (461)
                      |++|++++|++ +++++++++|+||++||++|+.+.|.++++++++++++.++.||++++++++++|+|.++|++++|++
T Consensus         2 v~~l~~~~~~~-~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   80 (105)
T 1nsw_A            2 TMTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKG   80 (105)
T ss_dssp             CEEECTTTHHH-HHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceeccHHhHHH-HHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeC
Confidence            68899999997 88888999999999999999999999999999998889999999999999999999999999999998


Q ss_pred             CCCCccccCCcchhHHHHHHHHH
Q psy17502         98 KRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        98 g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      |+...++.|..+.+.+.+++.+.
T Consensus        81 G~~~~~~~G~~~~~~l~~~l~~~  103 (105)
T 1nsw_A           81 GRPVKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             TEEEEEEESCCCHHHHHHHTTTT
T ss_pred             CeEEEEEecCCCHHHHHHHHHHH
Confidence            87778899999999999888653

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.80  E-value=1.8e-19  Score=144.79  Aligned_cols=108  Identities=31%  Similarity=0.674  Sum_probs=98.4

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      +.|..|++++|.+.+++++++++|+||++||++|+.+.|.|.++++.+.+++.|+.||++++++++++|+|.++||+++|
T Consensus         3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   82 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLY   82 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEE
Confidence            56899999999765778889999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCccccCC----cchhHHHHHHHHHHhh
Q psy17502         96 SDKRNPTPYQGA----RTADAIIDVALEAIRQ  123 (461)
Q Consensus        96 ~~g~~~~~y~g~----~~~~~i~~~i~~~~~~  123 (461)
                      ++|+...++.|.    .+.+.+.+|+.+.+..
T Consensus        83 ~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~  114 (122)
T 3aps_A           83 QYERAKKSIWEEQINSRDAKTIAALIYGKLET  114 (122)
T ss_dssp             EEEGGGTEEEEEEECCSCHHHHHHHHHHHHHC
T ss_pred             eCCCccceeeccccCcCCHHHHHHHHHHHHHh
Confidence            876667778876    8999999999988753

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.80  E-value=3.8e-19  Score=148.04  Aligned_cols=107  Identities=24%  Similarity=0.500  Sum_probs=101.3

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      ...++.++.++|++ .+..+++++|+||++||++|+.+.|.|+++++++.+++.|+.||++++++++++|+|.++||+++
T Consensus        37 ~~~v~~l~~~~~~~-~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~  115 (148)
T 3p2a_A           37 DGEVINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIML  115 (148)
T ss_dssp             CCCCEECCTTTHHH-HTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cCCceecCHHHHHH-HHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEE
Confidence            46799999999999 67888999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      |++|+.+.+|.|..+.+.|.+|+.+.+.
T Consensus       116 ~~~G~~~~~~~G~~~~~~l~~~l~~~l~  143 (148)
T 3p2a_A          116 YRNGKMIDMLNGAVPKAPFDNWLDEQLS  143 (148)
T ss_dssp             EETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             EECCeEEEEEeCCCCHHHHHHHHHHHhc
Confidence            9999888889999999999999999874

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.80  E-value=2.2e-19  Score=150.28  Aligned_cols=107  Identities=21%  Similarity=0.512  Sum_probs=99.6

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      ...++++++++|++ .++.+++++|+||++||++|+.+.|.|+++++++.+++.|+.||++++++++++|+|+++||+++
T Consensus        46 ~~~~~~l~~~~f~~-~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  124 (155)
T 2ppt_A           46 TGKVAGIDPAILAR-AERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFIL  124 (155)
T ss_dssp             CSSEEECCHHHHHH-HTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEE
T ss_pred             CCCCccCCHHHHHH-HHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEE
Confidence            35689999999999 56778899999999999999999999999999998889999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      |++|+...++.|..+.+.|.+|+.+.+.
T Consensus       125 ~~~G~~~~~~~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A          125 FHKGRELARAAGARPASELVGFVRGKLG  152 (155)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EeCCeEEEEecCCCCHHHHHHHHHHHhc
Confidence            9998888889999999999999998763

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.80  E-value=6.2e-20  Score=146.88  Aligned_cols=109  Identities=35%  Similarity=0.687  Sum_probs=99.8

Q ss_pred             CCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCC
Q psy17502         12 YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTG   88 (461)
Q Consensus        12 ~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~   88 (461)
                      +...+.|..++.++|++ +++++++++|+||++||++|+.+.|.|.++++.+++   ++.++.||++++++++++|+|++
T Consensus         3 ~~~~~~v~~l~~~~~~~-~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~   81 (120)
T 1mek_A            3 PEEEDHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRG   81 (120)
T ss_dssp             CCEETTEEECCTTTHHH-HHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCS
T ss_pred             ccCCCCcEEechhhHHH-HHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCc
Confidence            45567899999999998 778889999999999999999999999999998863   59999999999999999999999


Q ss_pred             ccEEEEEcCCCCC--ccccCCcchhHHHHHHHHHH
Q psy17502         89 FPTVKIFSDKRNP--TPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        89 ~P~l~~~~~g~~~--~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +|++++|++|+..  ..|.|..+.+.+.+|+.+.+
T Consensus        82 ~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  116 (120)
T 1mek_A           82 YPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             SSEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred             ccEEEEEeCCCcCCcccccCccCHHHHHHHHHhcc
Confidence            9999999988766  78999999999999998765

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.80  E-value=1.8e-19  Score=141.52  Aligned_cols=104  Identities=22%  Similarity=0.425  Sum_probs=97.5

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      .|++|++++|++ +++++++++|+||++||++|+.+.|.+.++++.+++++.++.||++++++++++|+|.++|++++|+
T Consensus         2 ~v~~l~~~~~~~-~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (109)
T 2yzu_A            2 KPIEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFK   80 (109)
T ss_dssp             CCEECCTTTHHH-HHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             cceEccHhHHHH-HhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEe
Confidence            588999999997 7888899999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         97 DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        97 ~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +|+....+.|..+.+.+.+|+.+.+
T Consensus        81 ~g~~~~~~~g~~~~~~l~~~l~~~l  105 (109)
T 2yzu_A           81 DGQPVEVLVGAQPKRNYQAKIEKHL  105 (109)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             CCcEeeeEeCCCCHHHHHHHHHHHh
Confidence            8877788999999999999998764

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.79  E-value=4.6e-19  Score=156.64  Aligned_cols=115  Identities=27%  Similarity=0.699  Sum_probs=106.4

Q ss_pred             cccCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCC
Q psy17502          9 HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTG   88 (461)
Q Consensus         9 ~~~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~   88 (461)
                      .+++.....+..|+.++|.. .+.++++++|+||++||++|+.+.|.|+++++++++++.|+.|||++++++|++|+|.+
T Consensus        90 fg~~~~~~~v~~l~~~~f~~-~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~  168 (210)
T 3apq_A           90 FGIYDDDPEIITLERREFDA-AVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNS  168 (210)
T ss_dssp             SSTTTTCTTSEECCHHHHHH-HHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCS
T ss_pred             ccccCCCCceEEecHHHHHH-HHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCc
Confidence            35666778899999999999 66888899999999999999999999999999998889999999999999999999999


Q ss_pred             ccEEEEEcCCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         89 FPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        89 ~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      +||+++|++|+.+.++.|..+.+.|.+|+.+.+...
T Consensus       169 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~~~  204 (210)
T 3apq_A          169 YPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRST  204 (210)
T ss_dssp             SSEEEEECTTSCCEECCSCCCHHHHHHHHHHHHHCC
T ss_pred             CCeEEEEECCCceeEecCCCCHHHHHHHHHHhCccc
Confidence            999999999988899999999999999999987543

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.79  E-value=4.1e-19  Score=138.11  Aligned_cols=102  Identities=29%  Similarity=0.501  Sum_probs=95.7

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcC
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD   97 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~   97 (461)
                      |++||.++|++ .++++++++|+||++||++|+.+.|.+.++++.+++ +.++.||++++++++++|+|.++|++++|++
T Consensus         1 V~~l~~~~~~~-~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   78 (104)
T 2e0q_A            1 VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPTVIFFKD   78 (104)
T ss_dssp             CEECCTTTHHH-HHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSCEEEEEET
T ss_pred             CeecCHHHHHH-HHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHHHHHhCCccccCEEEEEEC
Confidence            57899999999 668889999999999999999999999999999987 9999999999999999999999999999998


Q ss_pred             CCCCccccCCcchhHHHHHHHHHH
Q psy17502         98 KRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        98 g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |+...++.|..+.+.+.+|+.+.+
T Consensus        79 g~~~~~~~g~~~~~~l~~~l~~~l  102 (104)
T 2e0q_A           79 GEPVDEIIGAVPREEIEIRIKNLL  102 (104)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             CeEhhhccCCCCHHHHHHHHHHHh
Confidence            877788999999999999998875

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.79  E-value=4.1e-19  Score=138.44  Aligned_cols=104  Identities=24%  Similarity=0.476  Sum_probs=95.5

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      .|.+++.++|.+.+.+.+++++|+||++||++|+.+.|.+.++++++++++.++.||++++++++++|+|.++|++++++
T Consensus         1 ~v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (105)
T 1fb6_A            1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK   80 (105)
T ss_dssp             -CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             CceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEe
Confidence            36789999999955567889999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCCCCccccCCcchhHHHHHHHHH
Q psy17502         97 DKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        97 ~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +|+...++.|..+.+.+.+++.+.
T Consensus        81 ~g~~~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           81 NGERKESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             TTEEEEEEEECCCHHHHHHHHHHH
T ss_pred             CCeEEEEEecCCCHHHHHHHHHhh
Confidence            888788899999999999999764

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.79  E-value=1.2e-17  Score=151.12  Aligned_cols=216  Identities=19%  Similarity=0.322  Sum_probs=147.9

Q ss_pred             CCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeC--cccHhhhhhcCccc
Q psy17502        136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDA--TVHQRIAGEFNIRG  210 (461)
Q Consensus       136 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~--~~~~~l~~~~~i~~  210 (461)
                      ...++..++.++|.+.+.+++++++|.||++||++|+.+.|.|.++++.+.+   .+.|+.+||  +.+.++|++|+|.+
T Consensus        10 ~~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~   89 (244)
T 3q6o_A           10 PSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG   89 (244)
T ss_dssp             TTSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCS
T ss_pred             CCCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCc
Confidence            3567899999999998877789999999999999999999999999999986   799999999  66899999999999


Q ss_pred             ccEEEEEcCCCCCC-cCcccccCCCCHHHHHHHHHhhccCCCC-----CCcceeecCHHHHHHHh--cCCCeEEEEEeCC
Q psy17502        211 YPTIKFFSPGSRSA-SDAQEYNGGRTSQDIVTWALNKYTENVP-----PPEIKQIVSEATFKEAC--EDHPLCIVAVLPH  282 (461)
Q Consensus       211 ~P~i~~~~~~~~~~-~~~~~y~g~~~~~~i~~fi~~~~~~~~~-----~p~v~~~~~~~~~~~~~--~~~~~~~i~~~~~  282 (461)
                      +|++++|+++.+.. .....+.| .+.+.|.+||.+.......     .|.+... +...+..+.  ......+++|.+.
T Consensus        90 ~Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~-~~~~l~~~~~~~~~~~~al~f~~~  167 (244)
T 3q6o_A           90 FPTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPA-XLEEIDGFFARNNEEYLALIFEXG  167 (244)
T ss_dssp             SSEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCC-CHHHHHTHHHHCCCSEEEEEEECT
T ss_pred             cCEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccc-cHHHHHHHhhcCCCceEEEEEEEC
Confidence            99999999864422 12335566 6999999999877643221     1223333 334454443  2333334433221


Q ss_pred             ccccChhhHHHHHHHHHHHHHhccCcc-eEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHH
Q psy17502        283 ILDCQSSCRNNYLEILQKLGDKYKQKV-WGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINE  361 (461)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~va~~~~~~~-f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~  361 (461)
                           ..      ...++++..+.... +.+..++ .....+++.||++  .+|++++++.++....+.....+.+.+..
T Consensus       168 -----~~------~~~~~~~~d~~~~~~i~v~~~~-~~~~~l~~~f~v~--~~Pslvl~~~~g~~~~~~~~~~~r~~~~~  233 (244)
T 3q6o_A          168 -----GS------YLAREVALDLSQHKGVAVRRVL-NTEANVVRKFGVT--DFPSCYLLFRNGSVSRVPVLMESRSFYTA  233 (244)
T ss_dssp             -----TC------CHHHHHHHHTTTCTTEEEEEEE-TTCHHHHHHHTCC--CSSEEEEEETTSCEEECCCSSSSHHHHHH
T ss_pred             -----Cc------chHHHHHHHhccCCceEEEEEe-CchHHHHHHcCCC--CCCeEEEEeCCCCeEeeccccccHHHHHH
Confidence                 11      13445555555322 2333333 2347899999998  68999999877643333233446666777


Q ss_pred             HHHHHh
Q psy17502        362 FLRDLS  367 (461)
Q Consensus       362 Fi~~~~  367 (461)
                      +++.+.
T Consensus       234 ~l~~~~  239 (244)
T 3q6o_A          234 YLQRLS  239 (244)
T ss_dssp             HHHTC-
T ss_pred             HHHhCC
Confidence            776553

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=4.9e-19  Score=143.01  Aligned_cols=106  Identities=27%  Similarity=0.540  Sum_probs=96.1

Q ss_pred             CCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      ..+.|+.||+++|++ ++++  .++|+||++||++|+.+.|.|.++++.+.+ ++.|+.||++++++++++|+|.++||+
T Consensus         5 ~~~~v~~l~~~~f~~-~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   81 (126)
T 1x5e_A            5 SSGNVRVITDENWRE-LLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTI   81 (126)
T ss_dssp             CCCSEEECCTTTHHH-HTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCccEEecHHHHHH-HhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEE
Confidence            457899999999998 6654  399999999999999999999999999875 699999999999999999999999999


Q ss_pred             EEEcCCCCCccccCCcchhHHHHHHHHHHhh
Q psy17502         93 KIFSDKRNPTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      ++|++|+ +.+|.|..+.+.|.+|+.+.+..
T Consensus        82 ~~~~~G~-~~~~~G~~~~~~l~~~l~~~~~~  111 (126)
T 1x5e_A           82 YHCKDGE-FRRYQGPRTKKDFINFISDKEWK  111 (126)
T ss_dssp             EEEETTE-EEECCSCCCHHHHHHHHHTCGGG
T ss_pred             EEEeCCe-EEEeecCCCHHHHHHHHHHHhhc
Confidence            9998886 68899999999999999987643

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.79  E-value=5.3e-19  Score=145.87  Aligned_cols=108  Identities=27%  Similarity=0.475  Sum_probs=95.4

Q ss_pred             CCCCceEcCccchhHHHhc-----------CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHh
Q psy17502         14 SYSDVIKLTTSNFDDKVIK-----------SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSS   82 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~-----------~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~   82 (461)
                      ..+.++.|+.++|.+.+..           .+++++|+||++||++|+.+.|.|.++++.+.+++.++.||+++++++++
T Consensus        20 ~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   99 (141)
T 3hxs_A           20 PQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELAR   99 (141)
T ss_dssp             ---CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHH
T ss_pred             CCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHH
Confidence            3467999999999994443           47899999999999999999999999999999889999999999999999


Q ss_pred             hcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         83 SHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        83 ~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +|+|.++|++++|..++.+..+.|..+.+.|.+++.+.+
T Consensus       100 ~~~v~~~Pt~~~~~~~g~~~~~~G~~~~~~l~~~l~~~l  138 (141)
T 3hxs_A          100 DFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVL  138 (141)
T ss_dssp             HTTCCSSSEEEEECSSSCCEEEESCCCHHHHHHHHHHTT
T ss_pred             HcCCCCcCEEEEEeCCCCEEEEeCCCCHHHHHHHHHHHH
Confidence            999999999999964445668999999999999998765

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=6.6e-19  Score=143.74  Aligned_cols=110  Identities=24%  Similarity=0.472  Sum_probs=96.8

Q ss_pred             CCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC--CceEEEEEecCCchhhHhhcCCCCcc
Q psy17502         13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADEEKSLSSSHGVTGFP   90 (461)
Q Consensus        13 ~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~--~~v~~~~vd~~~~~~l~~~~~i~~~P   90 (461)
                      .+.+.|..|+.++|++.+.+.+++++|+||++||++|+.+.|.|.+++++++  +++.++.||+++++.++++|+|.++|
T Consensus         4 ~~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P   83 (133)
T 2dj3_A            4 GSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFP   83 (133)
T ss_dssp             CSSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSS
T ss_pred             cCCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCC
Confidence            4567899999999999333458899999999999999999999999999997  46999999999999999999999999


Q ss_pred             EEEEEcCCCCCc--ccc-CCcchhHHHHHHHHHHh
Q psy17502         91 TVKIFSDKRNPT--PYQ-GARTADAIIDVALEAIR  122 (461)
Q Consensus        91 ~l~~~~~g~~~~--~y~-g~~~~~~i~~~i~~~~~  122 (461)
                      |+++|.+|+...  .|. |.++.+.|.+|+.+.+.
T Consensus        84 t~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~  118 (133)
T 2dj3_A           84 TIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT  118 (133)
T ss_dssp             EEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSS
T ss_pred             EEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcc
Confidence            999999776543  577 66999999999998864

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.78  E-value=1.4e-18  Score=142.28  Aligned_cols=107  Identities=26%  Similarity=0.467  Sum_probs=96.5

Q ss_pred             CCCceEcCccchhHHHhc-----------CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhh
Q psy17502         15 YSDVIKLTTSNFDDKVIK-----------SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSS   83 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~-----------~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~   83 (461)
                      ...|++||+++|.+.+.+           ++++++|+||++||++|+.+.|.|.++++++++++.++.||++++++++++
T Consensus         8 ~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~   87 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGA   87 (136)
T ss_dssp             TTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHH
T ss_pred             CCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHH
Confidence            457899999999994443           467999999999999999999999999999988899999999999999999


Q ss_pred             cCCCCccEEEEE-cCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         84 HGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        84 ~~i~~~P~l~~~-~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      |+|.++|++++| .+|+.. .+.|..+.+.|.+|+.+...
T Consensus        88 ~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~  126 (136)
T 2l5l_A           88 FGIRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLL  126 (136)
T ss_dssp             TTCCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHT
T ss_pred             cCCCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhh
Confidence            999999999999 577554 78999999999999998864

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.78  E-value=7.5e-19  Score=140.84  Aligned_cols=107  Identities=23%  Similarity=0.444  Sum_probs=97.7

Q ss_pred             CCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ..+.+..++.++|.+.+++++++++|+||++||++|+.+.|.+.++++++++++.++.||++++++++++|+|.++|+++
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~   89 (121)
T 2i1u_A           10 EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI   89 (121)
T ss_dssp             --CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             hcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEE
Confidence            45679999999999856778889999999999999999999999999999878999999999999999999999999999


Q ss_pred             EEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         94 IFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        94 ~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +|++|+...++.|..+.+.+.+++.+.
T Consensus        90 ~~~~g~~~~~~~G~~~~~~l~~~l~~~  116 (121)
T 2i1u_A           90 LFKDGQPVKRIVGAKGKAALLRELSDV  116 (121)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHTCSC
T ss_pred             EEECCEEEEEecCCCCHHHHHHHHHHH
Confidence            999988778899999999999988754

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.78  E-value=1.3e-19  Score=145.56  Aligned_cols=105  Identities=25%  Similarity=0.528  Sum_probs=91.3

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCH--------------hHHhhHHHHHHHHHHcCCceEEEEEecCCchhhH
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCG--------------HCQSFKDEYMKLATALKGVVKVGAVNADEEKSLS   81 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~--------------~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~   81 (461)
                      +.|++|++++|++.+++++++++|.||++||+              +|+.+.|.|+++++++++++.++.||++++++++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~   82 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA   82 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTG
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH
Confidence            57899999999975678889999999999999              9999999999999999878999999999999999


Q ss_pred             hhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         82 SSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        82 ~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      ++|+|+++||+++|++|+...++.|..+.+++.+|+.+.
T Consensus        83 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  121 (123)
T 1oaz_A           83 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN  121 (123)
T ss_dssp             GGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTT
T ss_pred             HHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHH
Confidence            999999999999999988888899999999999998754

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.78  E-value=1.9e-19  Score=140.40  Aligned_cols=97  Identities=11%  Similarity=0.110  Sum_probs=79.2

Q ss_pred             CccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCC
Q psy17502         22 TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNP  101 (461)
Q Consensus        22 ~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~  101 (461)
                      +.++|++ +++++++++|+||++||++|+.+.|.++++++++. ++.++.||++++++++++|+|.++||+++|++|+.+
T Consensus         7 ~~~~~~~-~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~   84 (105)
T 4euy_A            7 TIEELAT-YIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEI   84 (105)
T ss_dssp             ---CCSS-STTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC---------CCCCEEEEEETTEEE
T ss_pred             CHHHHHH-HHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeEE
Confidence            5678888 77888999999999999999999999999999984 699999999999999999999999999999999888


Q ss_pred             ccccCCcchhHHHHHHHHH
Q psy17502        102 TPYQGARTADAIIDVALEA  120 (461)
Q Consensus       102 ~~y~g~~~~~~i~~~i~~~  120 (461)
                      .++.|..+.+++.+++.+.
T Consensus        85 ~~~~g~~~~~~l~~~l~~~  103 (105)
T 4euy_A           85 LRESRFISLENLERTIQLF  103 (105)
T ss_dssp             EEEESSCCHHHHHHHHHTT
T ss_pred             EEEeCCcCHHHHHHHHHHh
Confidence            8899999999999998764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.78  E-value=2.4e-18  Score=135.56  Aligned_cols=104  Identities=23%  Similarity=0.448  Sum_probs=93.2

Q ss_pred             CCCceEcCccchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-CchhhHhhcCCCCccE
Q psy17502         15 YSDVIKLTTSNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-EEKSLSSSHGVTGFPT   91 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~P~   91 (461)
                      .+.|..|+.++|.+ .+.  .+++++|+||++||++|+.+.|.+.++++.+++ +.++.||++ ++++++++|+|+++||
T Consensus         4 ~~~v~~l~~~~~~~-~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~v~~~Pt   81 (111)
T 2pu9_C            4 VGKVTEVNKDTFWP-IVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPT   81 (111)
T ss_dssp             TTSEEEECTTTHHH-HHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSBSSE
T ss_pred             cCccEEechHHHHH-HHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecCcchHHHHHHcCCCeeeE
Confidence            56799999999999 554  578999999999999999999999999999875 999999998 7899999999999999


Q ss_pred             EEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         92 VKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        92 l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++++++|+...++.|.. .+.+.+++.+..
T Consensus        82 ~~~~~~G~~~~~~~G~~-~~~l~~~l~~~~  110 (111)
T 2pu9_C           82 FKILKENSVVGEVTGAK-YDKLLEAIQAAR  110 (111)
T ss_dssp             EEEESSSSEEEEEESSC-HHHHHHHHHHHH
T ss_pred             EEEEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence            99999988777888885 888999887753

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.77  E-value=1.3e-18  Score=136.63  Aligned_cols=102  Identities=24%  Similarity=0.430  Sum_probs=92.6

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ......+.++|++ +++++++++|+||++||++|+.+.|.++++++++.+ +.|+.||++++++++++|+|.++|++++|
T Consensus         7 ~~~~~~~~~~f~~-~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   84 (109)
T 3f3q_A            7 MVTQFKTASEFDS-AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELGDVAQKNEVSAMPTLLLF   84 (109)
T ss_dssp             CCEECCSHHHHHH-HTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cccCCCCHHHHHH-HHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence            3455677899998 888899999999999999999999999999999866 99999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      ++|+.+.++.|. +.+.|.+++.+.
T Consensus        85 ~~G~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           85 KNGKEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             ETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCC-CHHHHHHHHHhh
Confidence            998888889998 668999988764

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.77  E-value=9.5e-19  Score=140.23  Aligned_cols=105  Identities=29%  Similarity=0.652  Sum_probs=93.5

Q ss_pred             CCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-----ceEEEEEecCCchhhHhhcCCCC
Q psy17502         14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-----VVKVGAVNADEEKSLSSSHGVTG   88 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-----~v~~~~vd~~~~~~l~~~~~i~~   88 (461)
                      ..+.|..|+.++|++.+..++++++|+||++||++|+.+.|.|+++++++++     ++.|+.||+++++ +++  +|.+
T Consensus         5 ~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~   81 (121)
T 2djj_A            5 SEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQG   81 (121)
T ss_dssp             CSCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSS
T ss_pred             CCCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCc
Confidence            4567999999999993347788999999999999999999999999999986     7999999999876 665  9999


Q ss_pred             ccEEEEEcCCCC--CccccCCcchhHHHHHHHHHH
Q psy17502         89 FPTVKIFSDKRN--PTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        89 ~P~l~~~~~g~~--~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +||+++|++|+.  ..+|.|.++.+.|.+|+.+.+
T Consensus        82 ~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~  116 (121)
T 2djj_A           82 FPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG  116 (121)
T ss_dssp             SSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             CCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhcc
Confidence            999999997755  788999999999999998764

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.77  E-value=9.6e-19  Score=146.33  Aligned_cols=129  Identities=19%  Similarity=0.317  Sum_probs=99.0

Q ss_pred             CCCCCceEcC-ccchhHHHhcC--CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCc
Q psy17502         13 PSYSDVIKLT-TSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGF   89 (461)
Q Consensus        13 ~~~~~v~~l~-~~~f~~~~~~~--~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   89 (461)
                      +..+.+..++ .++|.+ ++++  +++++|+||++||++|+.+.|.|.++++++. ++.|+.||++++++++++|+|.++
T Consensus         9 ~~~~~v~~l~~~~~~~~-~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~   86 (153)
T 2wz9_A            9 AAVAAVEEVGSAGQFEE-LLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSV   86 (153)
T ss_dssp             ---CCSEEECSHHHHHH-HHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSS
T ss_pred             cccCCeEEcCCHHHHHH-HHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCCCHHHHHHcCCCCC
Confidence            3456788997 588998 6666  8899999999999999999999999999974 599999999999999999999999


Q ss_pred             cEEEEEcCCCCCccccCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhh
Q psy17502         90 PTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLV  152 (461)
Q Consensus        90 P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~  152 (461)
                      |++++|++|+...++.|. +.+++.+++.+.+.....        ..+..+..++..+|++..
T Consensus        87 Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~l~~~~~--------~~~~~~~~l~~~~f~~~~  140 (153)
T 2wz9_A           87 PTFLFFKNSQKIDRLDGA-HAPELTKKVQRHASSGSF--------LPSAKVKVDTDPNSSSVD  140 (153)
T ss_dssp             SEEEEEETTEEEEEEESS-CHHHHHHHHHHHSCTTSS--------CSCCCCCCC---------
T ss_pred             CEEEEEECCEEEEEEeCC-CHHHHHHHHHHHhccccC--------CCccccccCCCCChhhHH
Confidence            999999988777778885 677899999988643221        233456677888887754

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.77  E-value=1.4e-18  Score=137.14  Aligned_cols=104  Identities=21%  Similarity=0.466  Sum_probs=94.0

Q ss_pred             CCceEc-CccchhHHHhcC----CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCcc
Q psy17502         16 SDVIKL-TTSNFDDKVIKS----DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFP   90 (461)
Q Consensus        16 ~~v~~l-~~~~f~~~~~~~----~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   90 (461)
                      +.|..+ +.++|++ .+..    +++++|+||++||++|+.+.|.|+++++++++++.++.||++++++++++|+|.++|
T Consensus         2 ~~v~~i~~~~~~~~-~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P   80 (112)
T 1ep7_A            2 GSVIVIDSKAAWDA-QLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             CSEEEECSHHHHHH-HHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             CcEEEecCHHHHHH-HHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCccc
Confidence            457788 5689998 6654    789999999999999999999999999999878999999999999999999999999


Q ss_pred             EEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         91 TVKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |++++++|+...++.|. +.+.+.+++.+.+
T Consensus        81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  110 (112)
T 1ep7_A           81 TFHVYKDGVKADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             EEEEEECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence            99999998877889998 8999999998765

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.77  E-value=1.3e-18  Score=140.01  Aligned_cols=105  Identities=24%  Similarity=0.483  Sum_probs=94.1

Q ss_pred             CCCCCceEcCccchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-CchhhHhhcCCCCc
Q psy17502         13 PSYSDVIKLTTSNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-EEKSLSSSHGVTGF   89 (461)
Q Consensus        13 ~~~~~v~~l~~~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~   89 (461)
                      ...+.+..+++++|.+ .+.  ++++++|.||++||++|+.+.|.++++++++++ +.++.||++ ++++++++|+|+++
T Consensus        15 ~~~~~v~~l~~~~~~~-~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~~v~~~   92 (124)
T 1faa_A           15 AIVGKVTEVNKDTFWP-IVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVV   92 (124)
T ss_dssp             TTTTSEEEECTTTHHH-HHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSS
T ss_pred             hcCCceEEecchhHHH-HHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecCcchHHHHHHcCCCee
Confidence            4567899999999999 544  678999999999999999999999999999875 999999998 68999999999999


Q ss_pred             cEEEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         90 PTVKIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        90 P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      ||++++++|+...++.|.. .+++.+++.+.
T Consensus        93 Pt~~~~~~G~~~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           93 PTFKILKENSVVGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             SEEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred             eEEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence            9999999988778888986 88899988765

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.77  E-value=1.6e-18  Score=139.42  Aligned_cols=103  Identities=21%  Similarity=0.382  Sum_probs=94.4

Q ss_pred             CCceEcCc-cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         16 SDVIKLTT-SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        16 ~~v~~l~~-~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      .-|..|++ ++|++ ++..+++++|.||++||++|+.+.|.|.++++++. ++.|+.||++++++++++|+|.++||+++
T Consensus        19 ~mv~~l~~~~~f~~-~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i   96 (125)
T 1r26_A           19 PSVVDVYSVEQFRN-IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFII   96 (125)
T ss_dssp             SCCEEECCHHHHHH-HHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cceEECCCHHHHHH-HHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence            34889999 99999 67888999999999999999999999999999985 59999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |++|+....+.| .+.+.|.+++.+.+
T Consensus        97 ~~~G~~~~~~~G-~~~~~l~~~l~~~l  122 (125)
T 1r26_A           97 ARSGKMLGHVIG-ANPGMLRQKLRDII  122 (125)
T ss_dssp             EETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred             EeCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence            999887788899 68889999998876

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.77  E-value=2.5e-18  Score=134.54  Aligned_cols=101  Identities=15%  Similarity=0.324  Sum_probs=88.8

Q ss_pred             ceEc-CccchhHHHh--cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         18 VIKL-TTSNFDDKVI--KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        18 v~~l-~~~~f~~~~~--~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      +.++ +.++|++ .+  .++++++|+||++||++|+.+.|.++++++++ +++.|+.||++++++++++|+|.++||+++
T Consensus         3 v~~i~~~~~~~~-~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   80 (107)
T 1gh2_A            3 VKPVGSDPDFQP-ELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQCQGTAATNNISATPTFQF   80 (107)
T ss_dssp             EEEECSGGGHHH-HHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred             eEEecCHHHHHH-HHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECccCHHHHHhcCCCcccEEEE
Confidence            4556 5689998 55  47889999999999999999999999999998 459999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |++|+...++.|... +++.+|+.+.+
T Consensus        81 ~~~G~~~~~~~G~~~-~~l~~~l~~~l  106 (107)
T 1gh2_A           81 FRNKVRIDQYQGADA-VGLEEKIKQHL  106 (107)
T ss_dssp             EETTEEEEEEESSCH-HHHHHHHHHHH
T ss_pred             EECCeEEEEEeCCCH-HHHHHHHHHhc
Confidence            999887888999655 45999988764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.77  E-value=2e-18  Score=153.78  Aligned_cols=109  Identities=24%  Similarity=0.505  Sum_probs=102.2

Q ss_pred             CCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ....+..||+++|++.+++++++++|+||++||++|+.+.|.|+++++++++++.++.||++++++++++|+|.++||++
T Consensus        10 ~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~   89 (222)
T 3dxb_A           10 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL   89 (222)
T ss_dssp             CSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEE
T ss_pred             CCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence            35679999999999866888899999999999999999999999999999988999999999999999999999999999


Q ss_pred             EEcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         94 IFSDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        94 ~~~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      +|++|+...++.|..+.+.+.+|+.+.+.
T Consensus        90 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  118 (222)
T 3dxb_A           90 LFKNGEVAATKVGALSKGQLKEFLDANLA  118 (222)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             EEECCeEEEEeccccChHHHHHHHHhhcc
Confidence            99998888899999999999999998863

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.76  E-value=1.6e-17  Score=148.90  Aligned_cols=202  Identities=15%  Similarity=0.148  Sum_probs=148.6

Q ss_pred             hhhhhhh-hcCCCeEEEEEe-----CCCChhhhhhhHHHHHHHHHh--cCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        146 SNFEKLV-YNSDDIWLVEFF-----APWCGHCKNLEPHWEKAASEL--EGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       146 ~~~~~~~-~~~~~~~~v~f~-----~~~c~~c~~~~~~~~~~a~~~--~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      +++.+.+ .+...+++|.||     ++||++|+.+.+.|.++|+.+  .+.+.++.+||+.++++|++|+|.++||+++|
T Consensus         9 ~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~   88 (229)
T 2ywm_A            9 MQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIE   88 (229)
T ss_dssp             HHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEE
T ss_pred             HHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEE
Confidence            3444544 244556666666     789999999999999999888  67899999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHh-cCCCeEEE-EEeCCccccChhhHHHHH
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEAC-EDHPLCIV-AVLPHILDCQSSCRNNYL  295 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~-~~~~~~~i-~~~~~~~~~~~~~~~~~~  295 (461)
                      +.+    .....|.|..+.+++..|+.......   ..+..++ ...+.... ...++.++ ++.++     ........
T Consensus        89 ~~~----~~~~~~~G~~~~~~l~~~~~~~~~~~---~~~~~l~-~~~~~~~~~~~~~~~~v~F~a~w-----C~~C~~~~  155 (229)
T 2ywm_A           89 GDK----DYGIRYIGLPAGLEFTTLINGIFHVS---QRKPQLS-EKTLELLQVVDIPIEIWVFVTTS-----CGYCPSAA  155 (229)
T ss_dssp             SSS----CCCEEEESCCCTTHHHHHHHHHHHHH---TTCCSCC-HHHHHHHTTCCSCEEEEEEECTT-----CTTHHHHH
T ss_pred             CCC----cccceecCCccHHHHHHHHHHHHhcc---CCccCCC-HHHHHHHHhcCCCeEEEEEECCC-----CcchHHHH
Confidence            854    46778999999999999987754211   1133343 34444443 34455344 44343     44556677


Q ss_pred             HHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHHHhc
Q psy17502        296 EILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSY  368 (461)
Q Consensus       296 ~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~  368 (461)
                      ..+.+++..+. . +.++.+|.+..+++++.||+.  .+|++++ +  +. ...+.|..+.+.|.+|++..+.
T Consensus       156 ~~~~~~~~~~~-~-v~~~~vd~~~~~~l~~~~~v~--~~Pt~~~-~--G~-~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          156 VMAWDFALAND-Y-ITSKVIDASENQDLAEQFQVV--GVPKIVI-N--KG-VAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             HHHHHHHHHCT-T-EEEEEEEGGGCHHHHHHTTCC--SSSEEEE-G--GG-TEEEESCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCC-C-eEEEEEECCCCHHHHHHcCCc--ccCEEEE-C--CE-EEEeeCCCCHHHHHHHHHHHhh
Confidence            88999999984 3 366666766788899999998  6899988 2  32 2225678899999999998874

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.76  E-value=6.5e-19  Score=142.69  Aligned_cols=103  Identities=17%  Similarity=0.307  Sum_probs=91.2

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ..+..++.+.+.. ...++++++|+||++||++|+.+.|.++++++++++++.++.||++++++++++|+|.++||+++|
T Consensus        25 ~~~~~~~~~~~~~-~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~  103 (128)
T 3ul3_B           25 PRLQQNGSNIING-VNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILL  103 (128)
T ss_dssp             -CCCCCCCSSSSB-TTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEE
T ss_pred             CccccCCccHHHH-HHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEE
Confidence            3444444555555 677889999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~  119 (461)
                      ++|+.+.++.|..+.+++.+|+.+
T Consensus       104 ~~G~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          104 KNKTMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             ETTEEEEEESSCCCHHHHHHHHTT
T ss_pred             ECCEEEEEecCCCCHHHHHHHHHh
Confidence            998888899999999999999864

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.76  E-value=3.2e-18  Score=137.34  Aligned_cols=106  Identities=15%  Similarity=0.297  Sum_probs=95.1

Q ss_pred             CCCCceEcCccchhHHHhc---CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCcc
Q psy17502         14 SYSDVIKLTTSNFDDKVIK---SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFP   90 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~---~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   90 (461)
                      ....+..++.++|++.+.+   .+++++|+||++||++|+.+.|.|.++++++.+ +.|+.||++++++++++|+|.++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~P   89 (122)
T 2vlu_A           11 AAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMP   89 (122)
T ss_dssp             -CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCHHHHHHcCCCccc
Confidence            3456778899999994444   578999999999999999999999999999887 999999999999999999999999


Q ss_pred             EEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         91 TVKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++++|++|+...++.|.. .+.+.+|+.+.+
T Consensus        90 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l  119 (122)
T 2vlu_A           90 TFLFMKEGDVKDRVVGAI-KEELTAKVGLHA  119 (122)
T ss_dssp             EEEEEETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred             EEEEEeCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence            999999988778899999 999999998875

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.7e-18  Score=135.55  Aligned_cols=103  Identities=16%  Similarity=0.340  Sum_probs=89.2

Q ss_pred             ceEcCc-cchhHHHhcC---CCeEEEEEECCCCHhHHhhHHHHHHHHHHcC-CceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         18 VIKLTT-SNFDDKVIKS---DEVWIVEYYAPWCGHCQSFKDEYMKLATALK-GVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        18 v~~l~~-~~f~~~~~~~---~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      |.+|++ ++|++ ++++   +++++|+||++||++|+.+.|.+++++++++ +++.++.||++++++++++|+|.++||+
T Consensus         2 v~~i~~~~~~~~-~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            2 VIEINDQEQFTY-LTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             EEEECCHHHHHH-HHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccCCHHHHHH-HHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEE
Confidence            678888 99998 6655   7899999999999999999999999999863 4599999999999999999999999999


Q ss_pred             EEEcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         93 KIFSDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      ++|++|+...++.|... +++.+++.+.+.
T Consensus        81 ~~~~~G~~~~~~~G~~~-~~l~~~l~~~~~  109 (112)
T 3d6i_A           81 IIIHKGTILKELSGADP-KEYVSLLEDCKN  109 (112)
T ss_dssp             EEEETTEEEEEECSCCH-HHHHHHHHHHHH
T ss_pred             EEEECCEEEEEecCCCH-HHHHHHHHHHHh
Confidence            99999888888899854 469999988763

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.76  E-value=2.8e-18  Score=133.89  Aligned_cols=101  Identities=21%  Similarity=0.473  Sum_probs=91.5

Q ss_pred             ceEcCc-cchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         18 VIKLTT-SNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        18 v~~l~~-~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      |.+|++ ++|.+ .++  ++++++|.||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++|++++
T Consensus         2 v~~l~~~~~~~~-~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   80 (106)
T 1xwb_A            2 VYQVKDKADLDG-QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVF   80 (106)
T ss_dssp             EEECCSHHHHHH-HHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ceecCCHHHHHH-HHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEE
Confidence            567888 89998 565  78899999999999999999999999999997779999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +++|+...++.| .+.+.+.+++.+.
T Consensus        81 ~~~G~~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           81 LKNGVKVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             EETTEEEEEEES-CCHHHHHHHHHHT
T ss_pred             EcCCcEEEEEcC-CCHHHHHHHHHHh
Confidence            999888888899 6888898888753

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.76  E-value=1e-17  Score=135.46  Aligned_cols=108  Identities=19%  Similarity=0.458  Sum_probs=96.2

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-----CceEEEEEeCcccHhhhhhcCcccc
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-----GKVKLGAVDATVHQRIAGEFNIRGY  211 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-----~~i~f~~v~~~~~~~l~~~~~i~~~  211 (461)
                      ++.+..++.++|++.+.+.+++++|.||++||++|+.+.|.|.++|+.+.     +.+.|+.+|++.+.+++++|+|.++
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~   93 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGF   93 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSS
T ss_pred             CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccC
Confidence            45689999999999876678999999999999999999999999998764     5699999999999999999999999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      |++++|++|.+  .....|.|.++.+.|.+||.++
T Consensus        94 Pt~~~~~~g~~--~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           94 PTMRYYTRIDK--QEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             SEEEEECSSCS--SSCEECCSCCCHHHHHHHHHHH
T ss_pred             CEEEEEeCCCC--CCceEecCCccHHHHHHHHHhc
Confidence            99999998743  1236899999999999999864

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.76  E-value=2e-18  Score=136.32  Aligned_cols=105  Identities=22%  Similarity=0.441  Sum_probs=94.6

Q ss_pred             CCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         13 PSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        13 ~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      +..+....++.++|++ +++++++++|+||++||++|+.+.|.+.++++++++ +.++.||++++++++++|+|.++|++
T Consensus         6 ~~~~~~~~~~~~~f~~-~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~   83 (112)
T 1syr_A            6 HHHMVKIVTSQAEFDS-IISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVSEVTEKENITSMPTF   83 (112)
T ss_dssp             ---CCEEECSHHHHHH-HHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             cceeEEEECCHHHHHH-HHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CEEEEEECCCCHHHHHHcCCCcccEE
Confidence            3456788999999999 778889999999999999999999999999999864 99999999999999999999999999


Q ss_pred             EEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         93 KIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +++++|+...++.|. +.+.|.+++.+.
T Consensus        84 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~  110 (112)
T 1syr_A           84 KVYKNGSSVDTLLGA-NDSALKQLIEKY  110 (112)
T ss_dssp             EEEETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred             EEEECCcEEEEEeCC-CHHHHHHHHHHh
Confidence            999998877889998 999999998754

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.75  E-value=3.1e-17  Score=146.72  Aligned_cols=205  Identities=14%  Similarity=0.153  Sum_probs=148.4

Q ss_pred             hhhhhhh-h-cCCCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcCceEEEEEeCcc--cHhhhhhcCcccccEEEEEcCC
Q psy17502        146 SNFEKLV-Y-NSDDIWLVEFFAP-WCGHCKNLEPHWEKAASELEGKVKLGAVDATV--HQRIAGEFNIRGYPTIKFFSPG  220 (461)
Q Consensus       146 ~~~~~~~-~-~~~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~--~~~l~~~~~i~~~P~i~~~~~~  220 (461)
                      +++.+.+ . ..+.++++.|+++ ||++|+.+.+.++++|+. .+.+.|+.+|++.  +++++++|+|.++|++++|++|
T Consensus        10 ~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g   88 (226)
T 1a8l_A           10 KVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDG   88 (226)
T ss_dssp             HHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETT
T ss_pred             HHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCC
Confidence            4444444 2 2456778999999 999999999999999864 5789999999998  8999999999999999999877


Q ss_pred             CCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHh-cCCCe-EEEEEeCCccccChhhHHHHHHHH
Q psy17502        221 SRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEAC-EDHPL-CIVAVLPHILDCQSSCRNNYLEIL  298 (461)
Q Consensus       221 ~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~-~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~  298 (461)
                      .   .....|.|..+.+.+..|+........   ....+ +...+.... .+.++ ++.++.++     ..........+
T Consensus        89 ~---~~~~~~~G~~~~~~l~~~l~~~l~~~~---~~~~l-~~~~~~~~~~~~~~~~~v~F~a~w-----C~~C~~~~p~~  156 (226)
T 1a8l_A           89 K---DFGVRYFGLPAGHEFAAFLEDIVDVSR---EETNL-MDETKQAIRNIDQDVRILVFVTPT-----CPYCPLAVRMA  156 (226)
T ss_dssp             B---CCSEEEESCCCTTHHHHHHHHHHHHHH---TCCCC-CHHHHHHHTTCCSCEEEEEEECSS-----CTTHHHHHHHH
T ss_pred             c---eeeEEEeccCcHHHHHHHHHHHHhhcC---CCCCC-CHHHHHHHHhcCCCcEEEEEeCCC-----CCccHHHHHHH
Confidence            2   124678898888889999876532110   11223 334444443 34555 44444444     44556677888


Q ss_pred             HHHHHhcc----CcceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHHHh
Q psy17502        299 QKLGDKYK----QKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLS  367 (461)
Q Consensus       299 ~~va~~~~----~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~  367 (461)
                      .+++..+.    +. +.++.+|.+...++++.||+.  .+|+++++.. +.....+.|..+.+.|.+|++..+
T Consensus       157 ~~l~~~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~--~~Pt~~~~~~-G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          157 HKFAIENTKAGKGK-ILGDMVEAIEYPEWADQYNVM--AVPKIVIQVN-GEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HHHHHHHHHTTCCC-EEEEEEEGGGCHHHHHHTTCC--SSCEEEEEET-TEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHhcccccCCc-EEEEEEEcccCHHHHHhCCCc--ccCeEEEEeC-CceeEEEcCCCCHHHHHHHHHHhh
Confidence            99999987    34 466777766778899999998  6899988863 322233467789999999998865

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.75  E-value=4.3e-18  Score=132.62  Aligned_cols=99  Identities=21%  Similarity=0.482  Sum_probs=89.7

Q ss_pred             eEc-CccchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         19 IKL-TTSNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        19 ~~l-~~~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ..+ +.++|++ .++  ++++++|+||++||++|+.+.|.++++++++++ +.++.||++++++++++|+|.++|++++|
T Consensus         3 ~~i~~~~~~~~-~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   80 (105)
T 3m9j_A            3 KQIESKTAFQE-ALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEVKSMPTFQFF   80 (105)
T ss_dssp             EECCSHHHHHH-HHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             EEcCCHHHHHH-HHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhHHHHHHcCCCcCcEEEEE
Confidence            344 5677887 666  688999999999999999999999999999876 99999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      ++|+...++.|. +.+.+.+++.+.
T Consensus        81 ~~g~~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           81 KKGQKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             ETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             ECCeEEEEEeCC-CHHHHHHHHHHh
Confidence            998888889999 999999999865

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.75  E-value=5.7e-18  Score=140.62  Aligned_cols=106  Identities=15%  Similarity=0.245  Sum_probs=95.1

Q ss_pred             EcCccchhHHHh-cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCC
Q psy17502         20 KLTTSNFDDKVI-KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDK   98 (461)
Q Consensus        20 ~l~~~~f~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g   98 (461)
                      ..+.++|++.+. +++++++|.|||+||++|+.+.|.++++++++++++.++.||++++++++++|+|.++||++++++|
T Consensus         8 i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G   87 (149)
T 3gix_A            8 LTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNG   87 (149)
T ss_dssp             ECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEEETT
T ss_pred             cCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEEECC
Confidence            346788998444 5688999999999999999999999999999988899999999999999999999999999999998


Q ss_pred             CCC---------ccccC-CcchhHHHHHHHHHHhhhh
Q psy17502         99 RNP---------TPYQG-ARTADAIIDVALEAIRQKV  125 (461)
Q Consensus        99 ~~~---------~~y~g-~~~~~~i~~~i~~~~~~~~  125 (461)
                      +.+         .++.| ..+.+++.+++........
T Consensus        88 ~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~  124 (149)
T 3gix_A           88 QHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAM  124 (149)
T ss_dssp             EEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhh
Confidence            877         78999 8999999999998875543

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.75  E-value=3.7e-18  Score=140.52  Aligned_cols=105  Identities=26%  Similarity=0.447  Sum_probs=83.1

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ..+.+++.++|.+.+.+.++ ++|+||++||++|+.+.|.|+++++++++++.|+.||++++++++++|+|.++||+++|
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  111 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLF  111 (140)
T ss_dssp             ----------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CccccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEE
Confidence            67899999999994444444 99999999999999999999999999987899999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++|+....+.|..+.+.+.+|+.+.+
T Consensus       112 ~~G~~~~~~~G~~~~~~l~~~i~~~l  137 (140)
T 1v98_A          112 RRGAPVATWVGASPRRVLEERLRPYL  137 (140)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence            99887888999999999999998876

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.75  E-value=3.1e-18  Score=135.50  Aligned_cols=103  Identities=25%  Similarity=0.442  Sum_probs=91.1

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      +..+..+++.++.+.+++++++++|.||++||++|+.+.|.++++++++.+ +.|+.||++++++++++|+|.++|++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   89 (114)
T 2oe3_A           11 YTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESPDIAKECEVTAMPTFVL   89 (114)
T ss_dssp             GGGSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSBSEEEE
T ss_pred             hhheeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCcccEEEE
Confidence            445677777555444888899999999999999999999999999999877 9999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~  119 (461)
                      +++|+...++.|.. .+.+.+++.+
T Consensus        90 ~~~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           90 GKDGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EETTEEEEEEESSC-HHHHHHHHHT
T ss_pred             EeCCeEEEEEeCCC-HHHHHHHHHh
Confidence            99988778899988 8888888763

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=3.3e-19  Score=146.30  Aligned_cols=107  Identities=20%  Similarity=0.402  Sum_probs=94.9

Q ss_pred             CCCCceEcCccchhHHHhcCC-CeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCC----
Q psy17502         14 SYSDVIKLTTSNFDDKVIKSD-EVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVT----   87 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~~~-~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~----   87 (461)
                      ..+.|..+++++|++.+.+.. ++++|+||++||++|+.+.|.|+++++++++ ++.|+.||++++++++++|+|.    
T Consensus         5 ~~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~   84 (137)
T 2dj0_A            5 SSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPL   84 (137)
T ss_dssp             CCSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSS
T ss_pred             CCceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCC
Confidence            456799999999999443333 3899999999999999999999999999986 7999999999999999999999    


Q ss_pred             --CccEEEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         88 --GFPTVKIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        88 --~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                        ++||+++|++|+.+.++.|..+.+.+.+|+.+.
T Consensus        85 ~~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  119 (137)
T 2dj0_A           85 TKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTFSE  119 (137)
T ss_dssp             SSCSSEEEEESSSSEEEEESCBCSSSCBCCCCCCH
T ss_pred             cCCCCEEEEEECCEEEEEecCcCchHHHHHHHhcc
Confidence              999999999998888899999998888887654

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.75  E-value=9.6e-18  Score=149.67  Aligned_cols=144  Identities=11%  Similarity=0.184  Sum_probs=116.6

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEE--CCCCHhHHhhHHHHHHHHHHcC---CceEEEEEecCC-----chhhHhhc
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYY--APWCGHCQSFKDEYMKLATALK---GVVKVGAVNADE-----EKSLSSSH   84 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~--~~~c~~C~~~~~~~~~~a~~~~---~~v~~~~vd~~~-----~~~l~~~~   84 (461)
                      .+.|+.||+.||++ ++++++++||.||  ||||+    +.|.|+++|+.+.   +++.|++|||++     ++++|++|
T Consensus        15 ~~~v~~Lt~~nF~~-vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~   89 (248)
T 2c0g_A           15 CTGCVDLDELSFEK-TVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY   89 (248)
T ss_dssp             CTTCEECCTTTHHH-HHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT
T ss_pred             CCCcEECCHHHHHH-HHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh
Confidence            46699999999999 8888899999999  99999    9999999999984   479999999998     89999999


Q ss_pred             CCC--CccEEEEEcCCCC--Cccc--cCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCe
Q psy17502         85 GVT--GFPTVKIFSDKRN--PTPY--QGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDI  158 (461)
Q Consensus        85 ~i~--~~P~l~~~~~g~~--~~~y--~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~  158 (461)
                      +|+  ++||+++|. |..  +..|  .|.++.+.|.+|+.+.+.....              ..-....++.++ .    
T Consensus        90 ~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~~~~--------------~~g~i~~~d~l~-~----  149 (248)
T 2c0g_A           90 KVDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPLYIG--------------RDGCIKEFNEVL-K----  149 (248)
T ss_dssp             TCCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSCCCC--------------CTTCCHHHHHHH-T----
T ss_pred             CCCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhccccC--------------CCCchHHHHHHH-H----
Confidence            999  999999999 862  5778  9999999999999988631100              011223444443 1    


Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhc
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELE  186 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~  186 (461)
                         .|.+.+|..+..+.+..++++..+.
T Consensus       150 ---~f~~~~~~~~~~~~~~~~~~~~~l~  174 (248)
T 2c0g_A          150 ---NYANIPDAEQLKLIEKLQAKQEQLT  174 (248)
T ss_dssp             ---TGGGSCHHHHHHHHHHHHHHHHHCC
T ss_pred             ---HHhcccchhHHHHHHHHHHHHHHcc
Confidence               2567778888888888888887763

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.75  E-value=3.4e-18  Score=158.85  Aligned_cols=106  Identities=18%  Similarity=0.402  Sum_probs=99.1

Q ss_pred             CCCceEcCccchhHHHhcC--CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         15 YSDVIKLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~--~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      ...|+++|.++|++ +++.  +++++|.||++||++|+.+.|.|+++++++++++.|+.||++++++++++|+|.++||+
T Consensus         6 ~~~v~~~~~~~f~~-~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   84 (287)
T 3qou_A            6 VENIVNINESNLQQ-VLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTV   84 (287)
T ss_dssp             CTTEEECCTTTHHH-HHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEE
T ss_pred             CCccEECCHHHHHH-HHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeE
Confidence            45799999999999 6654  78999999999999999999999999999998899999999999999999999999999


Q ss_pred             EEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         93 KIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++|++|+.+.+|.|..+.+.+..|+....
T Consensus        85 ~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           85 YLFQNGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEEECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence            99999888888999999999999998875

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.74  E-value=2e-18  Score=141.55  Aligned_cols=104  Identities=13%  Similarity=0.150  Sum_probs=82.5

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCC--CHhHHhhHHHHHHHHHHcCCceE--EEEEecCCchhhHhhcCCCCccEE
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPW--CGHCQSFKDEYMKLATALKGVVK--VGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~--c~~C~~~~~~~~~~a~~~~~~v~--~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      .+..||+++|++ ++++++.++|.|+++|  |++|+.+.|.|+++++++ +++.  |++||++++++++++|+|+++||+
T Consensus        18 ~~~~l~~~~f~~-~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~   95 (142)
T 2es7_A           18 GWQPVEASTVDD-WIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEAIGDRFNVRRFPAT   95 (142)
T ss_dssp             TCEECCCC---------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHHHHHTTTCCSSSEE
T ss_pred             cCcccccccHHH-HHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHHHHHhcCCCcCCeE
Confidence            688999999999 7777778999999887  999999999999999999 7788  999999999999999999999999


Q ss_pred             EEEcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         93 KIFSDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      ++|++|+...++.|..+.+.|.+|+.+.+.
T Consensus        96 ~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~  125 (142)
T 2es7_A           96 LVFTDGKLRGALSGIHPWAELLTLMRSIVD  125 (142)
T ss_dssp             EEESCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             EEEeCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            999999888999999999999999998874

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.74  E-value=4.3e-18  Score=135.49  Aligned_cols=101  Identities=16%  Similarity=0.417  Sum_probs=91.1

Q ss_pred             CCceEcCc-cchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         16 SDVIKLTT-SNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        16 ~~v~~l~~-~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      +++.++++ ++|.+ .++  ++++++|.||++||++|+.+.|.+.++++++  ++.++.||++++++++++|+|.++||+
T Consensus        13 ~~v~~l~~~~~~~~-~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~   89 (117)
T 2xc2_A           13 SELIELKQDGDLES-LLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEETARKYNISAMPTF   89 (117)
T ss_dssp             CEEEECCSTTHHHH-HHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             heeEEeCCHHHHHH-HHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHHHHHHcCCCccceE
Confidence            34889998 99998 665  7889999999999999999999999999888  699999999999999999999999999


Q ss_pred             EEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         93 KIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +++++|+...++.| .+.+.+.+++.+.
T Consensus        90 ~~~~~G~~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           90 IAIKNGEKVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             EEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             EEEeCCcEEEEEeC-CCHHHHHHHHHHh
Confidence            99999887888889 5788899988764

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=99.74  E-value=1.8e-17  Score=136.46  Aligned_cols=127  Identities=15%  Similarity=0.210  Sum_probs=100.1

Q ss_pred             CCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEeccc--ccchhHHHhhC
Q psy17502        251 VPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEA--VAQPDLENVLE  328 (461)
Q Consensus       251 ~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~--~~~~~~~~~lg  328 (461)
                      ...|+|++++.++....+..+.+..+++|..    ....+.+.++..++++|++|++++ .|+.+|.  ..+..+++.||
T Consensus        11 ~~~PLV~e~t~en~~~~~~~~~~~~~l~f~~----~~~~~~~~~~~~~~~vAk~fkgki-~Fv~vd~~~~~~~~~l~~fG   85 (147)
T 3bj5_A           11 NQLPLVIEFTEQTAPKIFGGEIKTHILLFLP----KSVSDYDGKLSNFKTAAESFKGKI-LFAFIDSDHTDNQRILEFFG   85 (147)
T ss_dssp             ----CEEECCTTTHHHHHSSSCCEEEEEECC----TTSSSHHHHHHHHHHHHHTTTTTC-EEEEECTTCGGGHHHHHHTT
T ss_pred             ccCCeeEEeccccHHHHhcCCCceEEEEEec----CCcHhHHHHHHHHHHHHHHcCCce-EEEEEecchHhHHHHHHHcC
Confidence            3489999999988777766666666554432    123347889999999999999987 6666665  56667899999


Q ss_pred             CCCCCCccEEEEcc-C-ccccccCCCCCCHHHHHHHHHHHhcCCCCCCCcCCCCCCC
Q psy17502        329 IGGFGYPAMAVLNA-K-KMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQ  383 (461)
Q Consensus       329 l~~~~~P~l~i~~~-~-~~k~~~~~~~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP~  383 (461)
                      ++..++|+++|++. . +.||.+..++++.++|.+|++++++||| +|++||||||+
T Consensus        86 l~~~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL-~p~~KSEpiPe  141 (147)
T 3bj5_A           86 LKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKI-KPHLMSQELPE  141 (147)
T ss_dssp             CCGGGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCS-CEEECCSCCCG
T ss_pred             CCcccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCc-cccccCCCCCC
Confidence            99778999999986 3 3688766689999999999999999999 59999999993

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.74  E-value=1.1e-17  Score=130.06  Aligned_cols=100  Identities=20%  Similarity=0.484  Sum_probs=89.7

Q ss_pred             ceEcCc-cchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         18 VIKLTT-SNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        18 v~~l~~-~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      |.++++ ++|++ .+.  ++++++|.||++||++|+.+.|.+.++++.++ ++.++.||++++++++++|+|.++|++++
T Consensus         1 v~~i~~~~~~~~-~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (104)
T 2vim_A            1 MRVLATAADLEK-LINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTFVF   78 (104)
T ss_dssp             CEECCSHHHHHH-HHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CeecCCHHHHHH-HHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCHHHHHHcCCccccEEEE
Confidence            456777 88998 665  67899999999999999999999999999986 59999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +++|+...++.| .+.+.+.+|+.+.
T Consensus        79 ~~~g~~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           79 IKDGKEVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             EETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             EeCCcEEEEEeC-CCHHHHHHHHHhh
Confidence            998887788889 6888999998764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.73  E-value=1.1e-17  Score=135.11  Aligned_cols=106  Identities=11%  Similarity=0.130  Sum_probs=95.7

Q ss_pred             CCceEcCccchh-----HHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe--cCCchhhHhhcCCCC
Q psy17502         16 SDVIKLTTSNFD-----DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN--ADEEKSLSSSHGVTG   88 (461)
Q Consensus        16 ~~v~~l~~~~f~-----~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd--~~~~~~l~~~~~i~~   88 (461)
                      ..+..++..+|+     . ...++++++|+||++||++|+.+.|.+.++++++++++.++.||  ++++++++++|+|.+
T Consensus         4 ~~~~~l~~~~~~~~~~~~-~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~   82 (126)
T 2l57_A            4 EGIKQINFQSINVVENLE-EAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANI   82 (126)
T ss_dssp             CCSSCTTTTCCSEESSTT-TCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCS
T ss_pred             cccCCCCccccchhHHHH-HHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcc
Confidence            456777888887     5 56778899999999999999999999999999998779999999  999999999999999


Q ss_pred             ccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         89 FPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        89 ~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      +|++++|. +|+...++.|..+.+.+.+++.+...
T Consensus        83 ~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~  117 (126)
T 2l57_A           83 VPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGV  117 (126)
T ss_dssp             SSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             eeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence            99999999 88777889999999999999998863

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=132.00  Aligned_cols=100  Identities=12%  Similarity=0.166  Sum_probs=84.6

Q ss_pred             CCceEcCccchhHHHhcCCC--eEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDE--VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~--~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ..|.++|.++|.+.+.+.++  +++|.||++||++|+.+.|.++++|+++.+ +.|++||+++.   +++|+|+++||++
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~-v~f~kvd~d~~---~~~~~v~~~PT~~   78 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE-TKFVKAIVNSC---IQHYHDNCLPTIF   78 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT-SEEEEEEGGGT---STTCCGGGCSEEE
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HHHCCCCCCCEEE
Confidence            35889999999995555544  999999999999999999999999999864 99999999975   6899999999999


Q ss_pred             EEcCCCCCccccCCc-------chhHHHHHHHH
Q psy17502         94 IFSDKRNPTPYQGAR-------TADAIIDVALE  119 (461)
Q Consensus        94 ~~~~g~~~~~y~g~~-------~~~~i~~~i~~  119 (461)
                      +|++|+.+.++.|..       +.+++..++.+
T Consensus        79 ~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           79 VYKNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             EEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             EEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence            999998888877754       45666666643

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.73  E-value=7.5e-18  Score=132.44  Aligned_cols=102  Identities=15%  Similarity=0.204  Sum_probs=91.7

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      .+..++.++| + .+.++++++|+||++||++|+.+.|.++++++.+. ++.++.||++++++++++|+|.++|++++|+
T Consensus         4 ~~~~~~~~~f-~-~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   80 (110)
T 2l6c_A            4 IRDITTEAGM-A-HFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKELGFERVPTLVFIR   80 (110)
T ss_dssp             CSBCGGGCSH-H-HHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEE
T ss_pred             eeecCCHHHH-H-HHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCHHHHHHcCCcccCEEEEEE
Confidence            3567889999 6 56678899999999999999999999999998875 5999999999999999999999999999999


Q ss_pred             CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         97 DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        97 ~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +|+.+.++.|..+.++|.+++....
T Consensus        81 ~G~~v~~~~G~~~~~~l~~~~~~~~  105 (110)
T 2l6c_A           81 DGKVAKVFSGIMNPRELQALYASIH  105 (110)
T ss_dssp             SSSEEEEEESCCCHHHHHHHHHTC-
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHh
Confidence            9988889999999999999987653

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.73  E-value=2.1e-17  Score=135.98  Aligned_cols=103  Identities=15%  Similarity=0.220  Sum_probs=88.6

Q ss_pred             CccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502         22 TTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN  100 (461)
Q Consensus        22 ~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~  100 (461)
                      +.++|++.+.+ ++++++|.|||+||++|+.+.|.++++++++++++.|+.||++++++++++|+|+++||+++|++|+.
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G~~   89 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKH   89 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEEECCcE
Confidence            57889874554 68899999999999999999999999999998889999999999999999999999999999998865


Q ss_pred             Cc---------cccCCcc-hhHHHHHHHHHHhhh
Q psy17502        101 PT---------PYQGART-ADAIIDVALEAIRQK  124 (461)
Q Consensus       101 ~~---------~y~g~~~-~~~i~~~i~~~~~~~  124 (461)
                      +.         +..|..+ .+++.+++...+...
T Consensus        90 v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~  123 (142)
T 1qgv_A           90 IMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA  123 (142)
T ss_dssp             EEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence            54         3556654 888999998876544

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.73  E-value=4.3e-18  Score=135.72  Aligned_cols=103  Identities=15%  Similarity=0.157  Sum_probs=88.3

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec----CCchhhHhhcCCCCcc
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA----DEEKSLSSSHGVTGFP   90 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~----~~~~~l~~~~~i~~~P   90 (461)
                      ..++..++.++|.+ .++++++++|+||++||++|+.+.|.+.+++++++.++.++.++.    +..++++++|+|.++|
T Consensus        11 ~~~~~~~~~~~~~~-~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~P   89 (118)
T 1zma_A           11 IKDLEVTTVVRAQE-ALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVP   89 (118)
T ss_dssp             TTTSEECCHHHHHH-HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSC
T ss_pred             HhhhhcCCHHHHHH-HHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCC
Confidence            35688999999999 777888999999999999999999999999998876666653322    2335799999999999


Q ss_pred             EEEEEcCCCCCccccCCcchhHHHHHHH
Q psy17502         91 TVKIFSDKRNPTPYQGARTADAIIDVAL  118 (461)
Q Consensus        91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~  118 (461)
                      |+++|++|+...++.|..+.+.|.+|+.
T Consensus        90 t~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           90 GFVHITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             EEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             eEEEEECCEEEEEecCCCCHHHHHHHhh
Confidence            9999999888888999999999999874

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.72  E-value=4e-18  Score=139.28  Aligned_cols=104  Identities=18%  Similarity=0.265  Sum_probs=94.8

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec---------CCchhhHhhcC
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA---------DEEKSLSSSHG   85 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~---------~~~~~l~~~~~   85 (461)
                      .+.++.++.++|++ .+++  +++|+||++||++|+.+.|.|.+++++++  +.|+.||+         +++++++++|+
T Consensus        15 ~~~v~~l~~~~~~~-~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~   89 (135)
T 3emx_A           15 DGRLIYITPEEFRQ-LLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAG   89 (135)
T ss_dssp             TTEEEECCHHHHHH-HHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred             cCceeecCHHHHHH-HhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcC
Confidence            45789999999999 6665  99999999999999999999999999886  89999999         88899999999


Q ss_pred             CCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHHhh
Q psy17502         86 VTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        86 i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      |.++||+++|++|+...++.|..+.+.+..++++...+
T Consensus        90 v~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~  127 (135)
T 3emx_A           90 VEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGG  127 (135)
T ss_dssp             CCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC--
T ss_pred             CceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCC
Confidence            99999999999998888999999999999999988643

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.72  E-value=2.1e-17  Score=132.83  Aligned_cols=103  Identities=23%  Similarity=0.414  Sum_probs=91.6

Q ss_pred             CCCceEc-CccchhHHHhc----CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCc
Q psy17502         15 YSDVIKL-TTSNFDDKVIK----SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGF   89 (461)
Q Consensus        15 ~~~v~~l-~~~~f~~~~~~----~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   89 (461)
                      ...|..| +.++|++ .+.    ++++++|+||++||++|+.+.|.|+++++++. ++.|+.||++++++++++|+|.++
T Consensus        15 ~~~v~~l~~~~~~~~-~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~   92 (124)
T 1xfl_A           15 EGQVIACHTVETWNE-QLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAM   92 (124)
T ss_dssp             CSCCEEESSHHHHHH-HHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCSS
T ss_pred             CCcEEEeCCHHHHHH-HHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHHcCCCcc
Confidence            4568888 6788988 544    47899999999999999999999999999987 599999999999999999999999


Q ss_pred             cEEEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         90 PTVKIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        90 P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      ||+++|++|+...++.| .+.+.+.+++.+.
T Consensus        93 Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~  122 (124)
T 1xfl_A           93 PTFMFLKEGKILDKVVG-AKKDELQSTIAKH  122 (124)
T ss_dssp             SEEEEEETTEEEEEEES-CCHHHHHHHHHHH
T ss_pred             CEEEEEECCEEEEEEeC-CCHHHHHHHHHHh
Confidence            99999999887778888 4888999988765

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.72  E-value=4.8e-16  Score=154.39  Aligned_cols=215  Identities=20%  Similarity=0.319  Sum_probs=146.8

Q ss_pred             CCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCc--ccHhhhhhcCccc
Q psy17502        136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDAT--VHQRIAGEFNIRG  210 (461)
Q Consensus       136 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~--~~~~l~~~~~i~~  210 (461)
                      ....|..++.++|.+.+.+++++++|.||++||++|+.+.|.|.++++.+.+   .+.|+.|||+  .+.++|++|+|.+
T Consensus        10 ~~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~   89 (519)
T 3t58_A           10 SSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG   89 (519)
T ss_dssp             TTSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCS
T ss_pred             CCCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcc
Confidence            3456899999999998777789999999999999999999999999999986   7999999995  4889999999999


Q ss_pred             ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCC-C----CCcceeecCHHHHHHHhcC--CCeEEEEEeCCc
Q psy17502        211 YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENV-P----PPEIKQIVSEATFKEACED--HPLCIVAVLPHI  283 (461)
Q Consensus       211 ~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~-~----~p~v~~~~~~~~~~~~~~~--~~~~~i~~~~~~  283 (461)
                      +|++++|++|.+.......+.|..+.+.|.++|.+...... .    .|.+..++ ...+..+...  ....++.|.+. 
T Consensus        90 ~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it-~~~l~~~l~~~~~~~vallF~~~-  167 (519)
T 3t58_A           90 FPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAK-LNDIDGFFTRNKADYLALVFERE-  167 (519)
T ss_dssp             BSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCC-HHHHTTGGGSCCCSEEEEEEECT-
T ss_pred             cCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcCC-HHHHHHHhccCCCCeEEEEecCC-
Confidence            99999999764322334556788999999999988764322 1    12344443 3444444432  23344444321 


Q ss_pred             cccChhhHHHHHHHHHHHHHhccCcc-eEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHH
Q psy17502        284 LDCQSSCRNNYLEILQKLGDKYKQKV-WGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEF  362 (461)
Q Consensus       284 ~~~~~~~~~~~~~~~~~va~~~~~~~-f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~F  362 (461)
                          ..      ...++++..+.... ..+..+. +....++++||++  .+|++++++.++..-.+.-..-+.+-+..+
T Consensus       168 ----~s------~~~~~~~ldl~~~~~v~v~~v~-~~~~~l~~kfgV~--~~Pslvl~~~nGk~~~~~v~~~~r~~~~~~  234 (519)
T 3t58_A          168 ----DS------YLGREVTLDLSQYHAVAVRRVL-NTESDLVNKFGVT--DFPSCYLLLRNGSVSRVPVLVESRSFYTSY  234 (519)
T ss_dssp             ----TC------CHHHHHHHHTTTCTTEEEEEEE-TTCHHHHHHHTCC--CSSEEEEEETTSCEEECCCSSCSHHHHHHH
T ss_pred             ----ch------HHHHHHHHHhhccCCeeEEEec-CchHHHHHHcCCC--CCCeEEEEeCCCceeecccccccHHHHHHH
Confidence                11      14456666666432 1222222 2346799999998  689999998776322221122234445555


Q ss_pred             HHH
Q psy17502        363 LRD  365 (461)
Q Consensus       363 i~~  365 (461)
                      ++.
T Consensus       235 l~~  237 (519)
T 3t58_A          235 LRG  237 (519)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            554

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.72  E-value=1e-17  Score=134.14  Aligned_cols=106  Identities=21%  Similarity=0.460  Sum_probs=94.9

Q ss_pred             CCCCceEcCc-cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCchhhHhhcCCCCccE
Q psy17502         14 SYSDVIKLTT-SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEKSLSSSHGVTGFPT   91 (461)
Q Consensus        14 ~~~~v~~l~~-~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~~i~~~P~   91 (461)
                      ....+..+++ ++|++ +++++++++|+||++||++|+.+.|.|+++++.+.++ +.++.||++++++++++|+|.++||
T Consensus        13 ~~~~~~~i~~~~~f~~-~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt   91 (121)
T 2j23_A           13 PRGSVQVISSYDQFKQ-VTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPT   91 (121)
T ss_dssp             CCCCEEECCSHHHHHH-HHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSE
T ss_pred             CCcceEEcCCHHHHHH-HHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccE
Confidence            3456777776 88988 7788889999999999999999999999999988765 9999999999999999999999999


Q ss_pred             EEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         92 VKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        92 l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +++|++|+...++.|. +.+.+.+|+.+.+
T Consensus        92 ~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           92 FVFFKNGQKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEEETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EEEEECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence            9999988878889998 8999999998753

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.71  E-value=2.9e-17  Score=130.77  Aligned_cols=104  Identities=18%  Similarity=0.365  Sum_probs=91.6

Q ss_pred             CCceEc--CccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         16 SDVIKL--TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        16 ~~v~~l--~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      +.+..+  +..+|.+.+.+++++++|+||++||++|+.+.|.|.++++++ +.+.|+.||++++++++++|+|.++|+++
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~   81 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGNAADAYGVSSIPALF   81 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CcceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHHHHHhcCCCCCCEEE
Confidence            457777  678998646677889999999999999999999999999998 67999999999999999999999999999


Q ss_pred             EEcC----CCCCccccCCcchhHHHHHHHHHH
Q psy17502         94 IFSD----KRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        94 ~~~~----g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +|++    |+...++.|..+. +|.+.+.++.
T Consensus        82 ~~~~~~~~G~~~~~~~G~~~~-~l~~~~~~~~  112 (118)
T 2f51_A           82 FVKKEGNEIKTLDQFVGADVS-RIKADIEKFK  112 (118)
T ss_dssp             EEEEETTEEEEEEEEESCCHH-HHHHHHHHHC
T ss_pred             EEeCCCCcceEEEeecCCCHH-HHHHHHHHhh
Confidence            9987    8777888998765 4888887764

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.71  E-value=3.3e-17  Score=129.37  Aligned_cols=104  Identities=21%  Similarity=0.384  Sum_probs=92.3

Q ss_pred             CCCceEc-CccchhHHHhc----CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCc
Q psy17502         15 YSDVIKL-TTSNFDDKVIK----SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGF   89 (461)
Q Consensus        15 ~~~v~~l-~~~~f~~~~~~----~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   89 (461)
                      ...++.+ +.++|.+ .++    .+++++|+||++||++|+.+.|.+.++++.+. ++.++.||++++++++++|+|.++
T Consensus         3 ~~~v~~i~~~~~~~~-~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~   80 (113)
T 1ti3_A            3 EGQVIACHTVDTWKE-HFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAM   80 (113)
T ss_dssp             CCCEEEECSHHHHHH-HHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSST
T ss_pred             CCceeEeccHHHHHH-HHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccHHHHHhCCCCcc
Confidence            3557777 6689998 554    47899999999999999999999999999986 599999999999999999999999


Q ss_pred             cEEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         90 PTVKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        90 P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |++++|++|+...++.| .+.+.+.+++.+.+
T Consensus        81 Pt~~~~~~G~~~~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           81 PTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             TEEEEEETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             cEEEEEeCCEEEEEEec-CCHHHHHHHHHHhh
Confidence            99999998877778888 68889999998875

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=5.4e-17  Score=132.24  Aligned_cols=121  Identities=58%  Similarity=1.081  Sum_probs=105.0

Q ss_pred             CCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc----CceEEEEEeCcccHhhhhhcCcccc
Q psy17502        136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE----GKVKLGAVDATVHQRIAGEFNIRGY  211 (461)
Q Consensus       136 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~----~~i~f~~v~~~~~~~l~~~~~i~~~  211 (461)
                      ....+..++.++|.+.+.+++++++|.||++||++|+.+.+.|.++++.+.    +.+.|+.+|++.+.+++++|+|.++
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   84 (133)
T 1x5d_A            5 SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF   84 (133)
T ss_dssp             SCCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSS
T ss_pred             CCCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCee
Confidence            445688999999998776778999999999999999999999999999987    7899999999999999999999999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeec
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIV  260 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~  260 (461)
                      |++++|++|    .....|.|..+.+.|.+|+.+......+.|.+.+++
T Consensus        85 Pt~~~~~~g----~~~~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (133)
T 1x5d_A           85 PTIKIFQKG----ESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLESG  129 (133)
T ss_dssp             SEEEEEETT----EEEEEECSCCSHHHHHHHHHHHHHHHSCCSSCCCCC
T ss_pred             CeEEEEeCC----CceEEecCCCCHHHHHHHHHHHhhccCCCccccccC
Confidence            999999987    356778999999999999998775544455555544

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.71  E-value=7.7e-17  Score=124.90  Aligned_cols=100  Identities=22%  Similarity=0.499  Sum_probs=86.8

Q ss_pred             eEc-Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        141 VEL-TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       141 ~~l-~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      ..+ +.++|++.+.+ .+++++|.|||+||++|+.+.|.|.++++.+. ++.|+.+|++++++++++|+|.++||+++|+
T Consensus         3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~   81 (105)
T 3zzx_A            3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVDECEDIAQDNQIACMPTFLFMK   81 (105)
T ss_dssp             EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC-CeEEEEEecccCHHHHHHcCCCeecEEEEEE
Confidence            345 45788887754 46799999999999999999999999999884 6899999999999999999999999999999


Q ss_pred             CCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        219 PGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|    ....++.| .+.+.|.+||.++
T Consensus        82 ~G----~~v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           82 NG----QKLDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             TT----EEEEEEES-CCHHHHHHHHHHH
T ss_pred             CC----EEEEEEeC-cCHHHHHHHHHhc
Confidence            88    45667788 5889999999875

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.54  E-value=8.7e-19  Score=136.73  Aligned_cols=103  Identities=32%  Similarity=0.590  Sum_probs=95.0

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcC
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD   97 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~   97 (461)
                      +.+|+.++|.+.+.+++++++|+||++||++|+.+.|.+.++++++++++.++.||++++++++++|+|.++|++++|++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   82 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKN   82 (106)
Confidence            67899999998566788899999999999999999999999999998789999999999999999999999999999998


Q ss_pred             CCCCccccCCcchhHHHHHHHHH
Q psy17502         98 KRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        98 g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      |+...++.|..+.+.+.+++.+.
T Consensus        83 g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           83 GQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            88888899999999999988754

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.70  E-value=6.5e-17  Score=128.79  Aligned_cols=104  Identities=22%  Similarity=0.390  Sum_probs=92.3

Q ss_pred             CCCceEc-CccchhHHHhcC----CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCc
Q psy17502         15 YSDVIKL-TTSNFDDKVIKS----DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGF   89 (461)
Q Consensus        15 ~~~v~~l-~~~~f~~~~~~~----~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   89 (461)
                      ...++.+ +.++|++ .+..    +++++|.||++||++|+.+.|.+++++++++ ++.++.||++++++++++|+|.++
T Consensus         5 ~~~v~~i~~~~~~~~-~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~   82 (118)
T 2vm1_A            5 EGAVIACHTKQEFDT-HMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELKDVAEAYNVEAM   82 (118)
T ss_dssp             CCCEEECCSHHHHHH-HHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSB
T ss_pred             CCceEEecCHHHHHH-HHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCHHHHHHcCCCcC
Confidence            4567888 5789998 5543    7899999999999999999999999999987 599999999999999999999999


Q ss_pred             cEEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         90 PTVKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        90 P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |+++++++|+...++.| .+.+.+.+++.+.+
T Consensus        83 Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~  113 (118)
T 2vm1_A           83 PTFLFIKDGEKVDSVVG-GRKDDIHTKIVALM  113 (118)
T ss_dssp             SEEEEEETTEEEEEEES-CCHHHHHHHHHHHH
T ss_pred             cEEEEEeCCeEEEEecC-CCHHHHHHHHHHHh
Confidence            99999999887778888 57889999998876

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.69  E-value=2.2e-16  Score=128.79  Aligned_cols=102  Identities=11%  Similarity=0.158  Sum_probs=88.3

Q ss_pred             CCCceEcCccchhHHHhcC--CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         15 YSDVIKLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~--~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      ...+.+|+.++|.+.+.+.  +++++|+||++||++|+.+.|.|+++++++. .+.|+.||+++..   ++|+|.++||+
T Consensus         9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~~---~~~~i~~~Pt~   84 (135)
T 2dbc_A            9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSCI---EHYHDNCLPTI   84 (135)
T ss_dssp             CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSSC---SSCCSSCCSEE
T ss_pred             CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcCc---ccCCCCCCCEE
Confidence            4679999999999944332  2599999999999999999999999999985 5999999999875   79999999999


Q ss_pred             EEEcCCCCCccccCCc-------chhHHHHHHHHH
Q psy17502         93 KIFSDKRNPTPYQGAR-------TADAIIDVALEA  120 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~-------~~~~i~~~i~~~  120 (461)
                      ++|++|+.+.++.|..       +.+.|..++.+.
T Consensus        85 ~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           85 FVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             EEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence            9999998888888875       677888888775

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.69  E-value=1.4e-16  Score=141.76  Aligned_cols=102  Identities=25%  Similarity=0.363  Sum_probs=92.7

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEEC--CCCHhHHhhHHHHHHHHHHcC--CceEEEEEe-----cCCchhhHhhcC
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYA--PWCGHCQSFKDEYMKLATALK--GVVKVGAVN-----ADEEKSLSSSHG   85 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~--~~c~~C~~~~~~~~~~a~~~~--~~v~~~~vd-----~~~~~~l~~~~~   85 (461)
                      .+.|+.||+.+|++ +++.++++||.|||  |||+    +.|.|+++++.+.  +++.|++||     |++++++|++|+
T Consensus         4 ~~~v~~Lt~~nF~~-~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~   78 (240)
T 2qc7_A            4 TKGALPLDTVTFYK-VIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYK   78 (240)
T ss_dssp             CTTCEECCTTHHHH-HGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTT
T ss_pred             CCCceECCHHHHHH-HHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcC
Confidence            35799999999999 78888999999999  9999    9999999999996  369999999     555899999999


Q ss_pred             CC--CccEEEEEcCCC--CCccccCCcchhHHHHHHHHHH
Q psy17502         86 VT--GFPTVKIFSDKR--NPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        86 i~--~~P~l~~~~~g~--~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |+  ++||+++|++|.  .+.+|.|.++.+.|.+|+.+..
T Consensus        79 V~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           79 LDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             CCGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence            99  999999999886  4789999999999999999874

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.69  E-value=2.8e-16  Score=123.56  Aligned_cols=106  Identities=21%  Similarity=0.396  Sum_probs=96.9

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      .++..++.++|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.++.++++|+|.++|++++|
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   83 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYF   83 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEE
T ss_pred             CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEE
Confidence            46889999999998767789999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|    .....+.|..+.+.|.+|+.+..
T Consensus        84 ~~g----~~~~~~~g~~~~~~l~~~l~~~l  109 (111)
T 3gnj_A           84 KDG----EYKGKMAGDVEDDEVEQMIADVL  109 (111)
T ss_dssp             ETT----EEEEEEESSCCHHHHHHHHHHHH
T ss_pred             ECC----EEEEEEeccCCHHHHHHHHHHHh
Confidence            877    35667899999999999998753

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.69  E-value=1.2e-16  Score=131.28  Aligned_cols=107  Identities=18%  Similarity=0.340  Sum_probs=93.5

Q ss_pred             CCCceEcC-ccchhHHHh---cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCcc
Q psy17502         15 YSDVIKLT-TSNFDDKVI---KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFP   90 (461)
Q Consensus        15 ~~~v~~l~-~~~f~~~~~---~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   90 (461)
                      ...++.++ .++|.+.+.   .++++++|.||++||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++|
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~P  101 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELSDFSASWEIKATP  101 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCEES
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcccHHHHHHcCCCccc
Confidence            45577775 789998332   357899999999999999999999999999985 5999999999999999999999999


Q ss_pred             EEEEEcCCCCCccccCCcchhHHHHHHHHHHhh
Q psy17502         91 TVKIFSDKRNPTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        91 ~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      +++++++|+...++.|. +.+++.+++.+.+..
T Consensus       102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~  133 (139)
T 3d22_A          102 TFFFLRDGQQVDKLVGA-NKPELHKKITAILDS  133 (139)
T ss_dssp             EEEEEETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence            99999988877888898 889999999888743

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.68  E-value=5.4e-17  Score=132.11  Aligned_cols=103  Identities=18%  Similarity=0.369  Sum_probs=89.9

Q ss_pred             CCCceEcCc-cchhHHHhcC--CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccE
Q psy17502         15 YSDVIKLTT-SNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPT   91 (461)
Q Consensus        15 ~~~v~~l~~-~~f~~~~~~~--~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   91 (461)
                      .+.++++++ ++|.+ +++.  +++++|.||++||++|+.+.|.|+++++.+  ++.|+.||++++++++++|+|.++||
T Consensus        19 ~~~v~~l~~~~~~~~-~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt   95 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQ-VFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPKLNDQHNIKALPT   95 (133)
T ss_dssp             TEEEEECCCTTHHHH-HHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CccEEEecChhHHHH-HHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchHHHHHhcCCCCCCE
Confidence            456889986 78887 6654  469999999999999999999999998877  49999999999999999999999999


Q ss_pred             EEEEc--CCC--CCccccCCcchhHHHHHHHHHH
Q psy17502         92 VKIFS--DKR--NPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        92 l~~~~--~g~--~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +++|+  +|+  ...++.|. +.++|.+++.+.+
T Consensus        96 ~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l  128 (133)
T 3cxg_A           96 FEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYC  128 (133)
T ss_dssp             EEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHS
T ss_pred             EEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHH
Confidence            99996  776  56778888 7889999998775

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.67  E-value=4.8e-16  Score=130.61  Aligned_cols=111  Identities=13%  Similarity=0.246  Sum_probs=94.5

Q ss_pred             CCceeEcChhhhhhhhhc-CCCeEEEEEeC-------CCChhhhhhhHHHHHHHHHhc-----CceEEEEEeCcccHhhh
Q psy17502        137 SKAVVELTDSNFEKLVYN-SDDIWLVEFFA-------PWCGHCKNLEPHWEKAASELE-----GKVKLGAVDATVHQRIA  203 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~-------~~c~~c~~~~~~~~~~a~~~~-----~~i~f~~v~~~~~~~l~  203 (461)
                      +..++.+|+++|++++.. .+.+++|.|++       +||++|+.+.|+|+++|+.+.     +++.|++||++++++++
T Consensus        17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la   96 (178)
T 3ga4_A           17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV   96 (178)
T ss_dssp             TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred             cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence            356899999999987643 24579999999       499999999999999999998     88999999999999999


Q ss_pred             hhcCcccccEEEEEcCCCCCC--------cCcccc---cC-CCCHHHHHHHHHhhc
Q psy17502        204 GEFNIRGYPTIKFFSPGSRSA--------SDAQEY---NG-GRTSQDIVTWALNKY  247 (461)
Q Consensus       204 ~~~~i~~~P~i~~~~~~~~~~--------~~~~~y---~g-~~~~~~i~~fi~~~~  247 (461)
                      ++|+|+++||+++|++|....        .....|   .| .++++.|.+||.+++
T Consensus        97 ~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t  152 (178)
T 3ga4_A           97 KDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKIL  152 (178)
T ss_dssp             HHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhc
Confidence            999999999999999885422        012344   35 799999999999887

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.66  E-value=4.1e-17  Score=157.58  Aligned_cols=108  Identities=24%  Similarity=0.437  Sum_probs=91.3

Q ss_pred             cccCCCCCCceEcCccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcC---C-----ceEEEEEecCCch
Q psy17502          9 HCLYPSYSDVIKLTTSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALK---G-----VVKVGAVNADEEK   78 (461)
Q Consensus         9 ~~~~~~~~~v~~l~~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~---~-----~v~~~~vd~~~~~   78 (461)
                      ..++...+.|+.|+.++|++ ++..+  ++++|.|||+||++|+.+.|.|+++++++.   +     ++.|+.|||++++
T Consensus        16 ~~l~~~~~~V~~Lt~~~F~~-~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~   94 (470)
T 3qcp_A           16 PGLFHLDSSVVDLSGDDFSR-VHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV   94 (470)
T ss_dssp             CCSCTTCTTEEECSCSCGGG-TCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH
T ss_pred             ccccCCCCCcEECCHHHHHH-HHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH
Confidence            44555567899999999999 66543  689999999999999999999999999987   2     5999999999999


Q ss_pred             hhHhhcCCCCccEEEEEcCC--CCCccccCCcchhHHHHHHH
Q psy17502         79 SLSSSHGVTGFPTVKIFSDK--RNPTPYQGARTADAIIDVAL  118 (461)
Q Consensus        79 ~l~~~~~i~~~P~l~~~~~g--~~~~~y~g~~~~~~i~~~i~  118 (461)
                      ++|++|+|.++||+++|++|  ....+|.|.++.+.| .|+.
T Consensus        95 ~la~~y~V~~~PTlilf~~gg~~~~~~y~G~r~~e~L-~fI~  135 (470)
T 3qcp_A           95 DLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHV-AFEN  135 (470)
T ss_dssp             HHHHHTTCCSSCEEEEEEESSCCCTTSCCCCCCEEEE-ECSC
T ss_pred             HHHHHcCCCccCeEEEEECCCceEEEEeeCCCCHHHH-HHHH
Confidence            99999999999999999744  346789998777654 4443

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=1.2e-15  Score=123.61  Aligned_cols=109  Identities=50%  Similarity=0.996  Sum_probs=98.0

Q ss_pred             CCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       136 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      ....+..++.++|.+.+.+++++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|+|.++|+++
T Consensus        15 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~   94 (130)
T 2dml_A           15 SSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIK   94 (130)
T ss_dssp             TTSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEE
T ss_pred             CCCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEE
Confidence            34568899999999876677889999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +|+++..   ....|.|..+.+++.+|+.+..
T Consensus        95 ~~~~~~~---~~~~~~G~~~~~~l~~~l~~~l  123 (130)
T 2dml_A           95 IFGANKN---KPEDYQGGRTGEAIVDAALSAL  123 (130)
T ss_dssp             EESSCTT---SCEECCSCCSHHHHHHHHHHHH
T ss_pred             EEeCCCC---eEEEeecCCCHHHHHHHHHHHH
Confidence            9998732   3677899999999999998765

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.66  E-value=4.4e-16  Score=124.26  Aligned_cols=104  Identities=10%  Similarity=0.122  Sum_probs=95.2

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCC--hhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWC--GHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c--~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ...+++++|++.+.++..+++|.|+++||  ++|+.+.|.++++++.+.+++.|+++|.+++++++.+|+|.+.||+++|
T Consensus        17 ~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTlilF   96 (137)
T 2qsi_A           17 PTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVV   96 (137)
T ss_dssp             CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEEEE
T ss_pred             CcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence            55889999999886655699999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|    ....+..|..+.+.|.+||.++.
T Consensus        97 kdG----~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           97 QPE----RTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             ECC----EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ECC----EEEEEEeCCCCHHHHHHHHHHHh
Confidence            999    56777889999999999997654

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.66  E-value=7.8e-16  Score=120.36  Aligned_cols=105  Identities=29%  Similarity=0.577  Sum_probs=94.7

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      +.+..++.++|.+.+.+++++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+++++++|++.++|++++|
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEE
Confidence            35788999999977667789999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ++|    .....+.|..+.+.|.+|+.+.
T Consensus        82 ~~G----~~~~~~~G~~~~~~l~~~l~~~  106 (108)
T 2trx_A           82 KNG----EVAATKVGALSKGQLKEFLDAN  106 (108)
T ss_dssp             ETT----EEEEEEESCCCHHHHHHHHHHH
T ss_pred             eCC----EEEEEEecCCCHHHHHHHHHHh
Confidence            776    3556788999999999999765

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.66  E-value=9.3e-16  Score=120.82  Aligned_cols=103  Identities=25%  Similarity=0.493  Sum_probs=93.9

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      ++.++.++|.+.+  .+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|+|.++|++++|++
T Consensus         3 v~~l~~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   80 (112)
T 2voc_A            3 IVKATDQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKD   80 (112)
T ss_dssp             CEECCTTTHHHHH--SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEET
T ss_pred             eEEecHHHHHHHh--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeC
Confidence            6788999999876  77899999999999999999999999999998889999999999999999999999999999977


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhhcc
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNKYT  248 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  248 (461)
                      |    .....+.|..+.+++.+|+.++..
T Consensus        81 G----~~~~~~~G~~~~~~l~~~l~~~~~  105 (112)
T 2voc_A           81 G----EVVETSVGFKPKEALQELVNKHLL  105 (112)
T ss_dssp             T----EEEEEEESCCCHHHHHHHHHTTSC
T ss_pred             C----EEEEEEeCCCCHHHHHHHHHHHHH
Confidence            6    356678999999999999988763

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.66  E-value=9.3e-16  Score=124.69  Aligned_cols=105  Identities=15%  Similarity=0.268  Sum_probs=95.0

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCC--ccEEEEE
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTG--FPTVKIF   95 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~P~l~~~   95 (461)
                      |.++|+++|.+ +++...+++|.||++ |++|+.+.|.++++|+++++++.|++||.+++++++++|||++  +|++++|
T Consensus         8 v~~~t~~~f~~-~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~   85 (133)
T 2djk_A            8 IGEIGPETYSD-YMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQ   85 (133)
T ss_dssp             SEECCHHHHHH-HHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEE
T ss_pred             eeccChHHHHH-HhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEE
Confidence            78999999998 678888999999999 8999999999999999999999999999999999999999999  9999999


Q ss_pred             cC--CCCCcccc--CCcchhHHHHHHHHHHhhhh
Q psy17502         96 SD--KRNPTPYQ--GARTADAIIDVALEAIRQKV  125 (461)
Q Consensus        96 ~~--g~~~~~y~--g~~~~~~i~~~i~~~~~~~~  125 (461)
                      ++  |+. ..+.  |..+.+.|.+|+...+...+
T Consensus        86 ~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l~Gkl  118 (133)
T 2djk_A           86 EVAKNQK-FPFDQEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             CTTTCCB-CCCCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred             ecCcCcc-cCCCCccccCHHHHHHHHHHHHcCCc
Confidence            86  544 4655  99999999999999886444

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.65  E-value=1.1e-15  Score=119.30  Aligned_cols=105  Identities=24%  Similarity=0.547  Sum_probs=94.6

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      +.+..++.++|.+.+...+++++|.|+++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|++.++|++++|
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLV   81 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEE
Confidence            35888999999887667789999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ++|    .....+.|..+.+.+.+|+.+.
T Consensus        82 ~~G----~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           82 RDG----KVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             ETT----EEEEEEESCCCHHHHHHHHHHT
T ss_pred             eCC----EEEEEecCCCCHHHHHHHHHhc
Confidence            776    3556688999999999999764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.65  E-value=1.3e-15  Score=121.43  Aligned_cols=108  Identities=27%  Similarity=0.471  Sum_probs=96.8

Q ss_pred             CCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        135 GSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       135 ~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      +.++.+..++.++|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|+|.++|++
T Consensus        10 ~~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~   89 (119)
T 1w4v_A           10 HGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTV   89 (119)
T ss_dssp             CCCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             CCceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEE
Confidence            44567888999999988777888999999999999999999999999999988899999999999999999999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ++|++|    .....+.|..+.+.|.+|+.+.
T Consensus        90 ~~~~~G----~~~~~~~G~~~~~~l~~~l~~~  117 (119)
T 1w4v_A           90 LAMKNG----DVVDKFVGIKDEDQLEAFLKKL  117 (119)
T ss_dssp             EEEETT----EEEEEEESCCCHHHHHHHHHHH
T ss_pred             EEEeCC----cEEEEEcCCCCHHHHHHHHHHH
Confidence            999776    3456788999999999999764

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.64  E-value=1.1e-15  Score=125.64  Aligned_cols=107  Identities=24%  Similarity=0.440  Sum_probs=97.6

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      ...+..++.++|.+.+.+++++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|+|.++|++++
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   84 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKF   84 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEE
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEE
Confidence            35688999999996677788999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        217 FSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |++|    .....+.|..+.+.|.+||.+..
T Consensus        85 ~~~G----~~~~~~~G~~~~~~l~~~l~~~l  111 (140)
T 3hz4_A           85 FCHG----RPVWEQVGQIYPSILKNAVRDML  111 (140)
T ss_dssp             EETT----EEEEEEESSCCHHHHHHHHHHHH
T ss_pred             EeCC----cEEEEEcCCCCHHHHHHHHHHHh
Confidence            9887    35667899999999999998764

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.64  E-value=1.9e-15  Score=117.62  Aligned_cols=103  Identities=26%  Similarity=0.498  Sum_probs=93.9

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ..+..++.+++.+.+  .+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|++.++|+++++
T Consensus         3 ~~v~~l~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 3die_A            3 MAIVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVF   80 (106)
T ss_dssp             CCCEECCTTTHHHHS--CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEE
T ss_pred             cceEECCHHHHHHHh--cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEE
Confidence            357889999999876  789999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ++|    .....+.|..+.+++.+|+.+.
T Consensus        81 ~~G----~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           81 KDG----QPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             ETT----EEEEEEESCCCHHHHHHHHHTT
T ss_pred             eCC----eEEEEEeCCCCHHHHHHHHHHh
Confidence            877    4566789999999999999764

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=3.8e-16  Score=126.64  Aligned_cols=105  Identities=18%  Similarity=0.334  Sum_probs=90.7

Q ss_pred             ceEcCccchhHHHh---cCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecC--CchhhHhhcCCCCc
Q psy17502         18 VIKLTTSNFDDKVI---KSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNAD--EEKSLSSSHGVTGF   89 (461)
Q Consensus        18 v~~l~~~~f~~~~~---~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~   89 (461)
                      .+.++..+|.+.+.   .++++++|.||++||++|+.+.|.+   ..+++.++..+.++.||++  .+.+++++|+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~   87 (130)
T 2kuc_A            8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAY   87 (130)
T ss_dssp             CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSS
T ss_pred             CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCC
Confidence            45678899988332   3678999999999999999999999   7777777667899999998  57889999999999


Q ss_pred             cEEEEE-cCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         90 PTVKIF-SDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        90 P~l~~~-~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      |+++++ .+|+...++.|..+.+.+.+++.+...
T Consensus        88 Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~  121 (130)
T 2kuc_A           88 PTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVE  121 (130)
T ss_dssp             CEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHH
Confidence            999999 588777889999999999999998863

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.63  E-value=1.7e-15  Score=122.27  Aligned_cols=104  Identities=28%  Similarity=0.546  Sum_probs=94.1

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      .++.++.++|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|+|.++|++++|+
T Consensus        23 ~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~  102 (128)
T 2o8v_B           23 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK  102 (128)
T ss_dssp             CSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEEE
T ss_pred             ccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEEe
Confidence            47889999999776678899999999999999999999999999999888999999999999999999999999999997


Q ss_pred             CCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        219 PGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|    .....+.|..+.++|.+|+.+.
T Consensus       103 ~G----~~~~~~~G~~~~~~l~~~l~~~  126 (128)
T 2o8v_B          103 NG----EVAATKVGALSKGQLKEFLDAN  126 (128)
T ss_dssp             TT----EEEEEEESCCCHHHHHHHHHHH
T ss_pred             CC----EEEEEEcCCCCHHHHHHHHHHh
Confidence            76    3456788999999999999764

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.63  E-value=9.1e-17  Score=130.34  Aligned_cols=111  Identities=20%  Similarity=0.363  Sum_probs=95.9

Q ss_pred             cccCCCCCCceEcC-ccchhHHHhc----CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhh
Q psy17502          9 HCLYPSYSDVIKLT-TSNFDDKVIK----SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSS   83 (461)
Q Consensus         9 ~~~~~~~~~v~~l~-~~~f~~~~~~----~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~   83 (461)
                      ...+.....+..++ .++|.+ .+.    ++++++|+||++||++|+.+.|.|.++++.+. ++.|+.||++++++++++
T Consensus         7 ~~~~~~~~~~~~i~~~~~~~~-~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~   84 (130)
T 1wmj_A            7 EGMAAEEGVVIACHNKDEFDA-QMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELKEVAEK   84 (130)
T ss_dssp             --CCSSCSSSBCCSSSHHHHH-HHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSGGGHHH
T ss_pred             ccccccCcceEEcCCHHHHHH-HHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchHHHHHH
Confidence            34455667788885 588988 544    47899999999999999999999999999986 599999999999999999


Q ss_pred             cCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         84 HGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        84 ~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      |+|.++|+++++++|+...++.| .+.+.+.+++.+.+.
T Consensus        85 ~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~  122 (130)
T 1wmj_A           85 YNVEAMPTFLFIKDGAEADKVVG-ARKDDLQNTIVKHVG  122 (130)
T ss_dssp             HTCCSSCCCCBCTTTTCCBCCCT-TCTTTHHHHHHHHTS
T ss_pred             cCCCccceEEEEeCCeEEEEEeC-CCHHHHHHHHHHHHh
Confidence            99999999999999988888888 588899999988763

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.63  E-value=1.7e-15  Score=118.98  Aligned_cols=104  Identities=36%  Similarity=0.810  Sum_probs=93.2

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCcccHhhhhhcCcccccE
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE---GKVKLGAVDATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~---~~i~f~~v~~~~~~~l~~~~~i~~~P~  213 (461)
                      +..+..++.++|++.+.  +++++|.||++||++|+.+.+.+.++++.+.   +.+.|+.+|++.+.+++++|+|.++|+
T Consensus         4 ~~~v~~l~~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt   81 (111)
T 3uvt_A            4 GSTVLALTENNFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPT   81 (111)
T ss_dssp             -CCSEECCTTTHHHHHH--SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCcceEcChhhHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccE
Confidence            34688999999999864  6799999999999999999999999998875   469999999999999999999999999


Q ss_pred             EEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +++|++|    .....+.|..+.+.|.+|+.++
T Consensus        82 ~~~~~~g----~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           82 LLLFRGG----KKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEEETT----EEEEEECSCCSHHHHHHHHHHH
T ss_pred             EEEEeCC----cEEEeccCCcCHHHHHHHHHhc
Confidence            9999887    4566889999999999999875

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.63  E-value=6.4e-16  Score=123.79  Aligned_cols=103  Identities=11%  Similarity=0.096  Sum_probs=95.0

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPW--CGHCKNLEPHWEKAASELEGK-VKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      +..+++++|++.+ .++.+++|.|+++|  |++|+.+.|.++++|+.+.++ +.|+++|.+++++++.+|+|.+.||+++
T Consensus        19 ~~~~t~~~F~~~v-~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlil   97 (140)
T 2qgv_A           19 WTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLV   97 (140)
T ss_dssp             CEECCHHHHHHHH-HTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEE
T ss_pred             CccCCHHHHHHHH-hCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence            6789999999987 47778999999999  999999999999999999988 9999999999999999999999999999


Q ss_pred             EcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        217 FSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |++|    ....+..|..+.+.|.+||.+..
T Consensus        98 Fk~G----~~v~~~~G~~~k~~l~~~i~~~l  124 (140)
T 2qgv_A           98 FTGG----NYRGVLNGIHPWAELINLMRGLV  124 (140)
T ss_dssp             EETT----EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EECC----EEEEEEecCCCHHHHHHHHHHHh
Confidence            9999    56677889999999999998766

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.63  E-value=3.3e-15  Score=118.20  Aligned_cols=106  Identities=21%  Similarity=0.460  Sum_probs=95.6

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ..+..++.++|.+.+.+.+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|++.++|++++|
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   86 (115)
T 1thx_A            7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLV   86 (115)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEEE
Confidence            45889999999987667789999999999999999999999999999987899999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|    .....+.|..+.+.+.+|+.+..
T Consensus        87 ~~G----~~~~~~~g~~~~~~l~~~l~~~l  112 (115)
T 1thx_A           87 KGE----QILDSTEGVISKDKLLSFLDTHL  112 (115)
T ss_dssp             ETT----EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             cCC----EEEEEecCCCCHHHHHHHHHHHh
Confidence            776    34557889999999999998764

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.63  E-value=2.9e-15  Score=116.85  Aligned_cols=103  Identities=29%  Similarity=0.527  Sum_probs=93.3

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      +..++.++|.+.+.+++++++|.||++||++|+.+.+.+.++++.+.+.+.++.+|++.+++++++|++.++|+++++++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   82 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKG   82 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESS
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeC
Confidence            67899999998776778999999999999999999999999999998889999999999999999999999999999987


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      |    .....+.|..+.+.+.+++.+.
T Consensus        83 G----~~~~~~~G~~~~~~l~~~l~~~  105 (107)
T 1dby_A           83 G----KKCETIIGAVPKATIVQTVEKY  105 (107)
T ss_dssp             S----SEEEEEESCCCHHHHHHHHHHH
T ss_pred             C----EEEEEEeCCCCHHHHHHHHHHH
Confidence            6    3456788999999999999764

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.63  E-value=1.9e-15  Score=122.36  Aligned_cols=104  Identities=12%  Similarity=0.185  Sum_probs=89.6

Q ss_pred             eeEc-Chhhhhhhhh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        140 VVEL-TDSNFEKLVY-NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       140 v~~l-~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      +..+ +.++|++.+. +++++++|.|+|+||++|+.+.|.++++|+++.+.+.|+.||+++.++++.+|+|.+.||+++|
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF  102 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF  102 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence            4556 5588988776 4778999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCCcCc--c-------cccCCCC-HHHHHHHHHhhc
Q psy17502        218 SPGSRSASDA--Q-------EYNGGRT-SQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~--~-------~y~g~~~-~~~i~~fi~~~~  247 (461)
                      ++|.    ..  .       ...|... .+.|.++|....
T Consensus       103 k~G~----~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A          103 YRNK----HMMIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             ETTE----EEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             ECCE----EEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence            9882    32  2       5778776 888999887653

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.63  E-value=5.6e-15  Score=120.67  Aligned_cols=107  Identities=31%  Similarity=0.555  Sum_probs=94.7

Q ss_pred             CceeEcChhhhhhhhhc-----------CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhc
Q psy17502        138 KAVVELTDSNFEKLVYN-----------SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF  206 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~-----------~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~  206 (461)
                      ..++.++.++|.+.+.+           .+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|
T Consensus         9 ~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~   88 (136)
T 2l5l_A            9 GKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAF   88 (136)
T ss_dssp             TSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHT
T ss_pred             CceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHc
Confidence            45888999999987753           4689999999999999999999999999999888999999999999999999


Q ss_pred             CcccccEEEEE-cCCCCCCcCcccccCCCCHHHHHHHHHhhccC
Q psy17502        207 NIRGYPTIKFF-SPGSRSASDAQEYNGGRTSQDIVTWALNKYTE  249 (461)
Q Consensus       207 ~i~~~P~i~~~-~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  249 (461)
                      +|.++|++++| ++|     ....+.|..+.+.|.+||.+....
T Consensus        89 ~v~~~Pt~~~~~~~G-----~~~~~~G~~~~~~l~~~l~~~~~~  127 (136)
T 2l5l_A           89 GIRSIPSILFIPMEG-----KPEMAQGAMPKASFKKAIDEFLLK  127 (136)
T ss_dssp             TCCSSCEEEEECSSS-----CCEEEESCCCHHHHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCC-----cEEEEeCCCCHHHHHHHHHHHhhc
Confidence            99999999999 555     334788999999999999987643

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.62  E-value=2.4e-15  Score=117.65  Aligned_cols=104  Identities=24%  Similarity=0.516  Sum_probs=94.8

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      +.+..++.++|.+.+ .++++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+++++++|++.++|++++|
T Consensus         4 ~~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~   82 (109)
T 3tco_A            4 DVTLVLTEENFDEVI-RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIF   82 (109)
T ss_dssp             CCCEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CeEEEecHHHHHHHH-hcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEE
Confidence            457889999999876 5689999999999999999999999999999988999999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ++|    .....+.|..+.+.|.+|+.+.
T Consensus        83 ~~g----~~~~~~~g~~~~~~l~~~l~~~  107 (109)
T 3tco_A           83 VNG----QLVDSLVGAVDEDTLESTVNKY  107 (109)
T ss_dssp             ETT----EEEEEEESCCCHHHHHHHHHHH
T ss_pred             cCC----cEEEeeeccCCHHHHHHHHHHH
Confidence            877    4566789999999999999865

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.62  E-value=3e-14  Score=129.22  Aligned_cols=204  Identities=13%  Similarity=0.209  Sum_probs=157.4

Q ss_pred             CceEcCc-cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         17 DVIKLTT-SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        17 ~v~~l~~-~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      .+..|++ +.+.+ +++.++.++|.|+++||   ....+.|.++|..+++.+.|+.+.   +.++++++++.+ |++++|
T Consensus         7 ~v~~l~s~~~~~~-~l~~~~v~vvgff~~~~---~~~~~~f~~~A~~lr~~~~F~~~~---~~~v~~~~~~~~-p~i~~f   78 (252)
T 2h8l_A            7 ASVPLRTEEEFKK-FISDKDASIVGFFDDSF---SEAHSEFLKAASNLRDNYRFAHTN---VESLVNEYDDNG-EGIILF   78 (252)
T ss_dssp             CEEECCSHHHHHH-HHTSSSCEEEEEESCTT---SHHHHHHHHHHHHTTTTSCEEEEC---CHHHHHHHCSSS-EEEEEE
T ss_pred             CceeecCHHHHHH-HhhcCCeEEEEEECCCC---ChHHHHHHHHHHhcccCcEEEEEC---hHHHHHHhCCCC-CcEEEE
Confidence            4778865 45555 88888999999999984   456779999999998889998884   577999999997 999999


Q ss_pred             cCC-------CCCccc-cCCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCC
Q psy17502         96 SDK-------RNPTPY-QGARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPW  167 (461)
Q Consensus        96 ~~g-------~~~~~y-~g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~  167 (461)
                      +.+       .....| .|..+.++|.+|+.....               +.|..+|.+++..+  . +.+.+|.|+...
T Consensus        79 k~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~---------------Plv~e~t~~n~~~~--~-~~~~~v~~~~~~  140 (252)
T 2h8l_A           79 RPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIF---------------GICPHMTEDNKDLI--Q-GKDLLIAYYDVD  140 (252)
T ss_dssp             CCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSS---------------CSSCEECTTTHHHH--S-SSSEEEEEECCB
T ss_pred             cchhhcccccccccccCCCCcCHHHHHHHHHhccc---------------CCeeecccccHhhh--c-CCCeEEEEeecc
Confidence            842       345678 999999999999998863               34779999998875  2 334556666432


Q ss_pred             Chhh----hhhhHHHHHHHHHhcCc---eEEEEEeCcccHhhhhhcCc----ccccEEEEEcCCCCCCcCcccccCCCCH
Q psy17502        168 CGHC----KNLEPHWEKAASELEGK---VKLGAVDATVHQRIAGEFNI----RGYPTIKFFSPGSRSASDAQEYNGGRTS  236 (461)
Q Consensus       168 c~~c----~~~~~~~~~~a~~~~~~---i~f~~v~~~~~~~l~~~~~i----~~~P~i~~~~~~~~~~~~~~~y~g~~~~  236 (461)
                      +..+    ..+...+.++|+.++++   +.|+.+|++....+++.||+    ..+|+++++...    .....+.+.++.
T Consensus       141 ~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~----~~ky~~~~~~t~  216 (252)
T 2h8l_A          141 YEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAK----GEKFVMQEEFSR  216 (252)
T ss_dssp             TTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTT----SCEEECCSCCCT
T ss_pred             hhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCc----CcEecCCcccCc
Confidence            2111    14677888999999876   99999999888888999999    358999998643    233446678888


Q ss_pred             HH--HHHHHHhhccCC
Q psy17502        237 QD--IVTWALNKYTEN  250 (461)
Q Consensus       237 ~~--i~~fi~~~~~~~  250 (461)
                      +.  |.+|+.....+.
T Consensus       217 ~~~~i~~F~~~~~~Gk  232 (252)
T 2h8l_A          217 DGKALERFLQDYFDGN  232 (252)
T ss_dssp             TSHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHCCC
Confidence            88  999998876544

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.62  E-value=3e-15  Score=117.84  Aligned_cols=105  Identities=26%  Similarity=0.504  Sum_probs=94.5

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      .+..++.+++.+.+.+++++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|++.++|++++++
T Consensus         6 ~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   85 (112)
T 1t00_A            6 TLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQ   85 (112)
T ss_dssp             CCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             eEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEEe
Confidence            47889999998877777889999999999999999999999999999878999999999999999999999999999998


Q ss_pred             CCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        219 PGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +|    .....+.|..+.+.+.+|+.+..
T Consensus        86 ~G----~~~~~~~G~~~~~~l~~~l~~~l  110 (112)
T 1t00_A           86 GG----EVAKTIVGAKPKAAIVRDLEDFI  110 (112)
T ss_dssp             TT----EEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CC----EEEEEEeCCCCHHHHHHHHHHHh
Confidence            77    35567889999999999987653

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.62  E-value=2.2e-15  Score=120.60  Aligned_cols=106  Identities=29%  Similarity=0.645  Sum_probs=93.9

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      +.+..++.++|.+.+.+++++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|+|.++|++++|
T Consensus         3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   82 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLY   82 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEE
Confidence            45788999999776667889999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCC----CCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGG----RTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~~  247 (461)
                      ++++    ....+.|.    .+.+.|.+|+.+..
T Consensus        83 ~~~~----~~~~~~g~~~~~~~~~~l~~~l~~~l  112 (122)
T 3aps_A           83 QYER----AKKSIWEEQINSRDAKTIAALIYGKL  112 (122)
T ss_dssp             EEEG----GGTEEEEEEECCSCHHHHHHHHHHHH
T ss_pred             eCCC----ccceeeccccCcCCHHHHHHHHHHHH
Confidence            8763    44556665    89999999998765

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.62  E-value=4e-15  Score=122.44  Aligned_cols=109  Identities=26%  Similarity=0.481  Sum_probs=94.9

Q ss_pred             CCCCceeEcChhhhhhhhhc-----------CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhh
Q psy17502        135 GSSKAVVELTDSNFEKLVYN-----------SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIA  203 (461)
Q Consensus       135 ~~~~~v~~l~~~~~~~~~~~-----------~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~  203 (461)
                      ..+..+..++.++|.+.+.+           .+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++
T Consensus        19 ~~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   98 (141)
T 3hxs_A           19 KPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELA   98 (141)
T ss_dssp             ----CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH
T ss_pred             CCCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHH
Confidence            34566889999999988755           4789999999999999999999999999999888999999999999999


Q ss_pred             hhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        204 GEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       204 ~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|+|.++|++++|..++    ....+.|..+.+.|.+||.+.+
T Consensus        99 ~~~~v~~~Pt~~~~~~~g----~~~~~~G~~~~~~l~~~l~~~l  138 (141)
T 3hxs_A           99 RDFGIQSIPTIWFVPMKG----EPQVNMGALSKEQLKGYIDKVL  138 (141)
T ss_dssp             HHTTCCSSSEEEEECSSS----CCEEEESCCCHHHHHHHHHHTT
T ss_pred             HHcCCCCcCEEEEEeCCC----CEEEEeCCCCHHHHHHHHHHHH
Confidence            999999999999996552    4458899999999999998754

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.62  E-value=2e-15  Score=119.62  Aligned_cols=104  Identities=22%  Similarity=0.445  Sum_probs=90.9

Q ss_pred             CCceeEcChhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        137 SKAVVELTDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      .+.....+.++|++.+.+ .+++++|.||++||++|+.+.+.+.++++.+.+ +.|+.+|++.+.+++++|+|.++|+++
T Consensus        11 ~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~   89 (116)
T 3qfa_C           11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKSMPTFQ   89 (116)
T ss_dssp             -CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             CcccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCccccEEE
Confidence            345666789999987642 688999999999999999999999999999876 999999999999999999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|++|    .....+.|. +.+.|.+||.+.
T Consensus        90 ~~~~G----~~~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           90 FFKKG----QKVGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             EESSS----SEEEEEESC-CHHHHHHHHHHH
T ss_pred             EEeCC----eEEEEEcCC-CHHHHHHHHHHh
Confidence            99877    356678898 999999999764

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.62  E-value=4.6e-15  Score=121.91  Aligned_cols=107  Identities=40%  Similarity=0.791  Sum_probs=96.0

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc---eEEEEEeCcccHhhhhhcCcccccE
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKLGAVDATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~---i~f~~v~~~~~~~l~~~~~i~~~P~  213 (461)
                      ...+..++.++|.+.+ ..+++++|.||++||++|+.+.+.|.++++.+.+.   +.|+.+|++.+.+++++|+|.++|+
T Consensus        16 ~~~v~~l~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   94 (140)
T 2dj1_A           16 ENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPT   94 (140)
T ss_dssp             ETTEEECCTTTHHHHH-TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSE
T ss_pred             CCCCEEcChHhHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCe
Confidence            4568889999999875 66789999999999999999999999999999765   9999999999999999999999999


Q ss_pred             EEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccC
Q psy17502        214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTE  249 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  249 (461)
                      +++|++|     ....|.|..+.+.|.+||.+....
T Consensus        95 ~~~~~~G-----~~~~~~g~~~~~~l~~~l~~~~~~  125 (140)
T 2dj1_A           95 IKILKKG-----QAVDYDGSRTQEEIVAKVREVSQP  125 (140)
T ss_dssp             EEEEETT-----EEEECCSCCCHHHHHHHHHHHHSS
T ss_pred             EEEEECC-----cEEEcCCCCCHHHHHHHHHHhcCC
Confidence            9999877     366789999999999999988743

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.61  E-value=1.6e-15  Score=123.54  Aligned_cols=98  Identities=18%  Similarity=0.357  Sum_probs=84.1

Q ss_pred             CccchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEec----CCchhhHhhcCCCCccEE
Q psy17502         22 TTSNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNA----DEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        22 ~~~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~----~~~~~l~~~~~i~~~P~l   92 (461)
                      +.++|.. .+.  .+++++|+||++||++|+.+.|.+   .++++.+++ +.++.||+    +...+++++|+|.++|++
T Consensus        18 ~~~~~~~-~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~   95 (134)
T 2fwh_A           18 TVDELNQ-ALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLNVLGLPTI   95 (134)
T ss_dssp             SHHHHHH-HHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred             CHHHHHH-HHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcCCCCCCEE
Confidence            4566776 444  378999999999999999999999   999998875 99999999    556789999999999999


Q ss_pred             EEE-cCCCCC--ccccCCcchhHHHHHHHHHH
Q psy17502         93 KIF-SDKRNP--TPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        93 ~~~-~~g~~~--~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++| .+|+.+  .++.|..+.++|.+++.+..
T Consensus        96 ~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~  127 (134)
T 2fwh_A           96 LFFDGQGQEHPQARVTGFMDAETFSAHLRDRQ  127 (134)
T ss_dssp             EEECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred             EEECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence            999 677666  68999999999999998753

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.61  E-value=1.3e-15  Score=113.39  Aligned_cols=82  Identities=24%  Similarity=0.409  Sum_probs=75.6

Q ss_pred             CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHH
Q psy17502         35 EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAII  114 (461)
Q Consensus        35 ~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~  114 (461)
                      .+.++.||++||++|+.+.|.++++++++++++.++.||++++++++++|+|.++|++++  +|+.  ++.|..+.+++.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~   78 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALV   78 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHH
Confidence            478999999999999999999999999998789999999999999999999999999999  6643  789999999999


Q ss_pred             HHHHHH
Q psy17502        115 DVALEA  120 (461)
Q Consensus       115 ~~i~~~  120 (461)
                      +++.+.
T Consensus        79 ~~l~~~   84 (85)
T 1fo5_A           79 EAIKKR   84 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999764

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.61  E-value=1.2e-15  Score=124.26  Aligned_cols=90  Identities=20%  Similarity=0.369  Sum_probs=81.6

Q ss_pred             hcCCCeEEEEEECCCCHhHHhhHHHHH--HHHHHcCCceEEEEEec---CCchhhHhhcCC---CCccEEEEE-cCCCCC
Q psy17502         31 IKSDEVWIVEYYAPWCGHCQSFKDEYM--KLATALKGVVKVGAVNA---DEEKSLSSSHGV---TGFPTVKIF-SDKRNP  101 (461)
Q Consensus        31 ~~~~~~~lv~f~~~~c~~C~~~~~~~~--~~a~~~~~~v~~~~vd~---~~~~~l~~~~~i---~~~P~l~~~-~~g~~~  101 (461)
                      ..++++++|+||++||++|+.+.|.|.  ++++.+++++.++.||+   +++++++++|+|   .++|++++| .+|+..
T Consensus        26 ~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           26 KRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEE
T ss_pred             HhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEE
Confidence            356889999999999999999999999  99999877899999999   889999999999   999999999 688777


Q ss_pred             ccccC-------CcchhHHHHHHHHH
Q psy17502        102 TPYQG-------ARTADAIIDVALEA  120 (461)
Q Consensus       102 ~~y~g-------~~~~~~i~~~i~~~  120 (461)
                      .++.|       ..+.+.+.+|+.+.
T Consensus       106 ~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A          106 YTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             EECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             EEecCCcccccccCCHHHHHHHHHHh
Confidence            78888       67888999998765

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.61  E-value=2.1e-15  Score=120.84  Aligned_cols=100  Identities=11%  Similarity=0.152  Sum_probs=84.8

Q ss_pred             CceEcCccchhHHHhcC--CCeEEEEEECC-------CCHhHHhhHHHHHHHHHHcCCceEEEEEec-------CCchhh
Q psy17502         17 DVIKLTTSNFDDKVIKS--DEVWIVEYYAP-------WCGHCQSFKDEYMKLATALKGVVKVGAVNA-------DEEKSL   80 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~--~~~~lv~f~~~-------~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~-------~~~~~l   80 (461)
                      .+...+.++|.+ .+..  +++++|.||++       ||++|+.+.|.+.++++++++++.|+.||+       +.++++
T Consensus         6 ~v~~~~~~~~~~-~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~   84 (123)
T 1wou_A            6 EVSVSGFEEFHR-AVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDF   84 (123)
T ss_dssp             EEEEESHHHHHH-HHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHH
T ss_pred             eEEeccHHHHHH-HHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHH
Confidence            466778899998 5544  78999999999       999999999999999999987899999999       788999


Q ss_pred             HhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHH
Q psy17502         81 SSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVAL  118 (461)
Q Consensus        81 ~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~  118 (461)
                      +++|+|.++||+++|+++.....+.| .+.+.+.+|+.
T Consensus        85 ~~~~~i~~~Pt~~~~~~~~~~~g~~~-~~~~~l~~~i~  121 (123)
T 1wou_A           85 RKNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFS  121 (123)
T ss_dssp             HHHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHH
T ss_pred             HHHCCCCeeCEEEEEcCCceEecccc-CCHHHHHHHHh
Confidence            99999999999999988655544554 45667777765

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.61  E-value=4.5e-15  Score=123.96  Aligned_cols=105  Identities=30%  Similarity=0.659  Sum_probs=95.2

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ..+..++.++|.+.+ ..+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++.+++++++|+|.++|++++|
T Consensus        47 ~~~~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  125 (155)
T 2ppt_A           47 GKVAGIDPAILARAE-RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILF  125 (155)
T ss_dssp             SSEEECCHHHHHHHT-TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEEE
T ss_pred             CCCccCCHHHHHHHH-hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEEE
Confidence            347789999999876 7788999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|    .....+.|..+.+.|.+|+.+..
T Consensus       126 ~~G----~~~~~~~G~~~~~~l~~~l~~~l  151 (155)
T 2ppt_A          126 HKG----RELARAAGARPASELVGFVRGKL  151 (155)
T ss_dssp             ETT----EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCC----eEEEEecCCCCHHHHHHHHHHHh
Confidence            877    35667899999999999998765

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.61  E-value=5.7e-16  Score=136.41  Aligned_cols=103  Identities=16%  Similarity=0.211  Sum_probs=89.7

Q ss_pred             CCceEc-CccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         16 SDVIKL-TTSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        16 ~~v~~l-~~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      ..|.+| +.++|.+.+.+.+  ++++|.||++||++|+.+.|.|.++++++. .+.|+.||++ +++++++|+|.++||+
T Consensus        99 g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~-~~~l~~~~~i~~~PTl  176 (217)
T 2trc_P           99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS-NTGAGDRFSSDVLPTL  176 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH-HHTCSTTSCGGGCSEE
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC-cHHHHHHCCCCCCCEE
Confidence            458888 8899999444433  799999999999999999999999999985 6999999999 8899999999999999


Q ss_pred             EEEcCCCCCccccCCcch-------hHHHHHHHHH
Q psy17502         93 KIFSDKRNPTPYQGARTA-------DAIIDVALEA  120 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~~~-------~~i~~~i~~~  120 (461)
                      ++|++|+.+..+.|..+.       +.|..|+.+.
T Consensus       177 ~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          177 LVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            999998877888888775       7788887653

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=2.4e-15  Score=122.39  Aligned_cols=110  Identities=27%  Similarity=0.625  Sum_probs=95.3

Q ss_pred             CCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCcccHhhhhhcCcccccE
Q psy17502        136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       136 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~~~~l~~~~~i~~~P~  213 (461)
                      ....+..++.++|.+.+.+.+++++|.||++||++|+.+.+.|.++++.+.  +.+.|+.+|++.+..++++|+|.++|+
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt   84 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT   84 (133)
T ss_dssp             SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSE
T ss_pred             CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCE
Confidence            456789999999998775568899999999999999999999999999997  579999999999999999999999999


Q ss_pred             EEEEcCCCCCCcCccccc-CCCCHHHHHHHHHhhc
Q psy17502        214 IKFFSPGSRSASDAQEYN-GGRTSQDIVTWALNKY  247 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~-g~~~~~~i~~fi~~~~  247 (461)
                      +++|.++..  .....|. |..+.+.|.+||.+..
T Consensus        85 ~~~~~~g~~--~~~~~~~gg~~~~~~l~~~l~~~~  117 (133)
T 2dj3_A           85 IYFAPSGDK--KNPIKFEGGNRDLEHLSKFIDEHA  117 (133)
T ss_dssp             EEEECTTCT--TSCEECCSSCCSTTHHHHHHHHHS
T ss_pred             EEEEeCCCc--ccceEecCCCcCHHHHHHHHHHhc
Confidence            999987732  1233577 5689999999998876

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.61  E-value=5.6e-15  Score=114.75  Aligned_cols=103  Identities=29%  Similarity=0.569  Sum_probs=92.6

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      +..++.++|.+.+.+++++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+++++++|++.++|+++++++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   81 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKN   81 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeC
Confidence            56789999998776778899999999999999999999999999998889999999999999999999999999999987


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      |    .....+.|..+.+.+.+|+.+.
T Consensus        82 g----~~~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           82 G----ERKESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             T----EEEEEEEECCCHHHHHHHHHHH
T ss_pred             C----eEEEEEecCCCHHHHHHHHHhh
Confidence            7    3556688999999999998763

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.60  E-value=4e-15  Score=115.62  Aligned_cols=102  Identities=25%  Similarity=0.511  Sum_probs=90.8

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      +..++.++|.+. .+++++++|.||++||++|+.+.+.+.++++.+.+.+.++.+|++.+.+++++|++.++|+++++++
T Consensus         2 v~~l~~~~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   80 (105)
T 1nsw_A            2 TMTLTDANFQQA-IQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKG   80 (105)
T ss_dssp             CEEECTTTHHHH-HSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceeccHHhHHHH-HhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeC
Confidence            678899999865 5677899999999999999999999999999998789999999999999999999999999999977


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      |    .....+.|..+.+.+.+|+.+.
T Consensus        81 G----~~~~~~~G~~~~~~l~~~l~~~  103 (105)
T 1nsw_A           81 G----RPVKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             T----EEEEEEESCCCHHHHHHHTTTT
T ss_pred             C----eEEEEEecCCCHHHHHHHHHHH
Confidence            6    3556788999999999988653

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.60  E-value=3.4e-15  Score=119.32  Aligned_cols=107  Identities=25%  Similarity=0.494  Sum_probs=95.4

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      ...+..++.+++.+.+.+++++++|.|+++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|+|.++|++++
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~   90 (121)
T 2i1u_A           11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLIL   90 (121)
T ss_dssp             -CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEE
Confidence            45688999999988776778899999999999999999999999999998789999999999999999999999999999


Q ss_pred             EcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        217 FSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +++|    .....+.|..+.+.+.+||.+..
T Consensus        91 ~~~g----~~~~~~~G~~~~~~l~~~l~~~l  117 (121)
T 2i1u_A           91 FKDG----QPVKRIVGAKGKAALLRELSDVV  117 (121)
T ss_dssp             EETT----EEEEEEESCCCHHHHHHHTCSCC
T ss_pred             EECC----EEEEEecCCCCHHHHHHHHHHHH
Confidence            9877    35567899999999999986543

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.60  E-value=5.6e-15  Score=118.04  Aligned_cols=107  Identities=33%  Similarity=0.732  Sum_probs=92.2

Q ss_pred             CCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-----ceEEEEEeCcccHhhhhhcCccc
Q psy17502        136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-----KVKLGAVDATVHQRIAGEFNIRG  210 (461)
Q Consensus       136 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-----~i~f~~v~~~~~~~l~~~~~i~~  210 (461)
                      ....+..++.++|.+.+...+++++|.||++||++|+.+.+.|.++++.+.+     .+.|+.+|++.++ +++  +|.+
T Consensus         5 ~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~   81 (121)
T 2djj_A            5 SEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQG   81 (121)
T ss_dssp             CSCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSS
T ss_pred             CCCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCc
Confidence            3456889999999987656788999999999999999999999999999986     7999999998765 555  9999


Q ss_pred             ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        211 YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       211 ~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +|++++|+++++  .....|.|..+.++|.+||.++.
T Consensus        82 ~Pt~~~~~~~~~--~~~~~~~G~~~~~~l~~~i~~~~  116 (121)
T 2djj_A           82 FPTIKLYPAGAK--GQPVTYSGSRTVEDLIKFIAENG  116 (121)
T ss_dssp             SSEEEEECSSCT--TSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             CCeEEEEeCcCC--CCceEecCCCCHHHHHHHHHhcc
Confidence            999999998732  12667899999999999998765

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.60  E-value=8.3e-15  Score=121.57  Aligned_cols=106  Identities=27%  Similarity=0.599  Sum_probs=97.0

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      ...+..++.+++.+.+ ..+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++.+.+++++|+|.++|++++
T Consensus        37 ~~~v~~l~~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~  115 (148)
T 3p2a_A           37 DGEVINATAETLDKLL-QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIML  115 (148)
T ss_dssp             CCCCEECCTTTHHHHT-TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cCCceecCHHHHHHHH-hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEE
Confidence            3568889999999876 788999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        217 FSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |++|    .....|.|..+.+.|.+||.+..
T Consensus       116 ~~~G----~~~~~~~G~~~~~~l~~~l~~~l  142 (148)
T 3p2a_A          116 YRNG----KMIDMLNGAVPKAPFDNWLDEQL  142 (148)
T ss_dssp             EETT----EEEEEESSCCCHHHHHHHHHHHH
T ss_pred             EECC----eEEEEEeCCCCHHHHHHHHHHHh
Confidence            9877    45667899999999999998875

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=9.4e-15  Score=117.65  Aligned_cols=103  Identities=37%  Similarity=0.735  Sum_probs=91.9

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      ...+..++.++|.+.+ +.  .++|.||++||++|+.+.+.+.++++.+.+ .+.|+.+|++.+.+++++|+|.++|+++
T Consensus         6 ~~~v~~l~~~~f~~~~-~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~   82 (126)
T 1x5e_A            6 SGNVRVITDENWRELL-EG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIY   82 (126)
T ss_dssp             CCSEEECCTTTHHHHT-SS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCccEEecHHHHHHHh-CC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEE
Confidence            4568899999999864 33  389999999999999999999999999875 7999999999999999999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +|++|     ....|.|..+.+.|.+|+.+..
T Consensus        83 ~~~~G-----~~~~~~G~~~~~~l~~~l~~~~  109 (126)
T 1x5e_A           83 HCKDG-----EFRRYQGPRTKKDFINFISDKE  109 (126)
T ss_dssp             EEETT-----EEEECCSCCCHHHHHHHHHTCG
T ss_pred             EEeCC-----eEEEeecCCCHHHHHHHHHHHh
Confidence            99776     3567899999999999998765

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.59  E-value=6.3e-15  Score=129.95  Aligned_cols=106  Identities=30%  Similarity=0.745  Sum_probs=97.0

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      ...+..++.++|...+ ..+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.||++.+.+++++|+|.++|++++
T Consensus        96 ~~~v~~l~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  174 (210)
T 3apq_A           96 DPEIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFI  174 (210)
T ss_dssp             CTTSEECCHHHHHHHH-HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CCceEEecHHHHHHHH-ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEE
Confidence            4568899999999876 667899999999999999999999999999998889999999999999999999999999999


Q ss_pred             EcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        217 FSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |++|    .....+.|..+.+.|.+||.+..
T Consensus       175 ~~~G----~~~~~~~G~~~~~~l~~~i~~~l  201 (210)
T 3apq_A          175 FRSG----MAAVKYNGDRSKESLVAFAMQHV  201 (210)
T ss_dssp             ECTT----SCCEECCSCCCHHHHHHHHHHHH
T ss_pred             EECC----CceeEecCCCCHHHHHHHHHHhC
Confidence            9777    35678899999999999999876

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.59  E-value=2.1e-15  Score=120.74  Aligned_cols=104  Identities=29%  Similarity=0.581  Sum_probs=87.9

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCCh--------------hhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCG--------------HCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG  204 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~--------------~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~  204 (461)
                      .+..++.++|.+.+.+++++++|.||++||+              +|+.+.+.|.++++.+.+.+.|+.+|++.+.++++
T Consensus         4 ~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~   83 (123)
T 1oaz_A            4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP   83 (123)
T ss_dssp             SCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGG
T ss_pred             ccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHH
Confidence            4788999999877677889999999999999              99999999999999998789999999999999999


Q ss_pred             hcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        205 EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       205 ~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|+|.++|++++|++|    .....+.|..+.+++.+|+.+.
T Consensus        84 ~~~v~~~Pt~~~~~~G----~~~~~~~G~~~~~~l~~~l~~~  121 (123)
T 1oaz_A           84 KYGIRGIPTLLLFKNG----EVAATKVGALSKGQLKEFLDAN  121 (123)
T ss_dssp             GGTCCBSSEEEEEESS----SEEEEEESCCCHHHHHHHHTTT
T ss_pred             HcCCCccCEEEEEECC----EEEEEEeCCCCHHHHHHHHHHH
Confidence            9999999999999777    3556789999999999999754

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.59  E-value=1.1e-14  Score=129.55  Aligned_cols=110  Identities=28%  Similarity=0.550  Sum_probs=99.7

Q ss_pred             CCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        135 GSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       135 ~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      +....+..++.++|.+.+.+++++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+..++++|+|.++|++
T Consensus         9 ~~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~   88 (222)
T 3dxb_A            9 PMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL   88 (222)
T ss_dssp             CCSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEE
T ss_pred             CCCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEE
Confidence            34456889999999987778889999999999999999999999999999988899999999999999999999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHHhhcc
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYT  248 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  248 (461)
                      +++++|    .....+.|..+.+.+.+|+.+...
T Consensus        89 ~~~~~G----~~~~~~~G~~~~~~l~~~l~~~l~  118 (222)
T 3dxb_A           89 LLFKNG----EVAATKVGALSKGQLKEFLDANLA  118 (222)
T ss_dssp             EEEETT----EEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             EEEECC----eEEEEeccccChHHHHHHHHhhcc
Confidence            999977    456678999999999999998763

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.59  E-value=1.6e-15  Score=112.86  Aligned_cols=82  Identities=13%  Similarity=0.270  Sum_probs=75.1

Q ss_pred             eEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHH
Q psy17502         36 VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID  115 (461)
Q Consensus        36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~  115 (461)
                      ..+|.||++||++|+.+.|.++++++++++++.++.||++++++++++|+|.++|++++  +|+.  ++.|..+.+.+.+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~   78 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE   78 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHH
Confidence            46899999999999999999999999998889999999999999999999999999999  6644  7899999999999


Q ss_pred             HHHHHH
Q psy17502        116 VALEAI  121 (461)
Q Consensus       116 ~i~~~~  121 (461)
                      ++.+.+
T Consensus        79 ~l~~~l   84 (85)
T 1nho_A           79 AINDEM   84 (85)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            998753

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.58  E-value=2e-15  Score=134.57  Aligned_cols=103  Identities=15%  Similarity=0.186  Sum_probs=86.6

Q ss_pred             CCceEc-CccchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         16 SDVIKL-TTSNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        16 ~~v~~l-~~~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      ..|.+| +.++|.+.+.+  .+++++|.||++||++|+.+.|.|.++++++.+ +.|++||+++ +.++++|+|.++||+
T Consensus       112 G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~d~-~~l~~~~~I~~~PTl  189 (245)
T 1a0r_P          112 GFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASN-TGAGDRFSSDVLPTL  189 (245)
T ss_dssp             CSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEHHH-HCCTTSSCTTTCSEE
T ss_pred             CeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeCCc-HHHHHHCCCCCCCEE
Confidence            468889 78999994433  367999999999999999999999999999876 9999999987 789999999999999


Q ss_pred             EEEcCCCCCccccCCc-------chhHHHHHHHHH
Q psy17502         93 KIFSDKRNPTPYQGAR-------TADAIIDVALEA  120 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~~-------~~~~i~~~i~~~  120 (461)
                      ++|++|+.+..+.|..       +.+.|..|+.+.
T Consensus       190 l~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          190 LVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             EEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             EEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence            9999987766676653       345677777654

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.58  E-value=2.7e-14  Score=116.03  Aligned_cols=126  Identities=17%  Similarity=0.291  Sum_probs=96.4

Q ss_pred             CCCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCC
Q psy17502        250 NVPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEI  329 (461)
Q Consensus       250 ~~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl  329 (461)
                      .+..|++.+++..+....+..+.++++. |..    . ....+.+...+.++|++|++++ .|+.+|.+.++++++.||+
T Consensus         2 ~c~~plv~~~t~~~f~~~~~~~~pv~v~-f~a----~-~~~c~~~~p~l~~~A~~~~gk~-~f~~vd~d~~~~~a~~~gi   74 (133)
T 2djk_A            2 PLGSPLIGEIGPETYSDYMSAGIPLAYI-FAE----T-AEERKELSDKLKPIAEAQRGVI-NFGTIDAKAFGAHAGNLNL   74 (133)
T ss_dssp             CCSCCCSEECCHHHHHHHHHTTSCEEEE-ECS----C-SSSHHHHHHHHHHHHHSSTTTS-EEEEECTTTTGGGTTTTTC
T ss_pred             CcccCceeccChHHHHHHhcCCCCEEEE-Eec----C-hhhHHHHHHHHHHHHHHhCCeE-EEEEEchHHhHHHHHHcCC
Confidence            3557889998776654443334444443 322    1 2345688899999999999986 6777777778889999999


Q ss_pred             CCCCCccEEEEcc-Ccccccc-CCCCCCHHHHHHHHHHHhcCCCCCCCcCCCCCCC
Q psy17502        330 GGFGYPAMAVLNA-KKMKYSL-LKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQ  383 (461)
Q Consensus       330 ~~~~~P~l~i~~~-~~~k~~~-~~~~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP~  383 (461)
                      ...+.|++++++. .+.+|.+ ..|.++.+.|.+|++++++|++ +|++||||+|+
T Consensus        75 ~~~~iPtl~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gkl-~p~~kSe~iP~  129 (133)
T 2djk_A           75 KTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI-EPSIKSEPIPE  129 (133)
T ss_dssp             CSSSSSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCC-CCSSCCCCCCT
T ss_pred             CcccCCEEEEEecCcCcccCCCCccccCHHHHHHHHHHHHcCCc-CccccCCCCCC
Confidence            9666999999985 3456644 2388999999999999999999 59999999995

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.58  E-value=1.1e-14  Score=113.73  Aligned_cols=103  Identities=25%  Similarity=0.526  Sum_probs=92.6

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      +..++.++|.+. .+.+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|++.++|++++|++
T Consensus         3 v~~l~~~~~~~~-~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   81 (109)
T 2yzu_A            3 PIEVTDQNFDET-LGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKD   81 (109)
T ss_dssp             CEECCTTTHHHH-HHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceEccHhHHHHH-hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeC
Confidence            678999999965 4677899999999999999999999999999998889999999999999999999999999999977


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |    .....+.|..+.+.+.+|+.+..
T Consensus        82 g----~~~~~~~g~~~~~~l~~~l~~~l  105 (109)
T 2yzu_A           82 G----QPVEVLVGAQPKRNYQAKIEKHL  105 (109)
T ss_dssp             T----EEEEEEESCCCHHHHHHHHHTTC
T ss_pred             C----cEeeeEeCCCCHHHHHHHHHHHh
Confidence            6    34557889999999999998754

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.58  E-value=1e-14  Score=112.85  Aligned_cols=102  Identities=28%  Similarity=0.557  Sum_probs=91.2

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      |..++.++|.+.+ +.+++++|.|+++||++|+.+.+.+.++++.+.+ +.|+.+|++.+.+++++|++.++|++++|++
T Consensus         1 V~~l~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   78 (104)
T 2e0q_A            1 VIHLDSKNFDSFL-ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPTVIFFKD   78 (104)
T ss_dssp             CEECCTTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSCEEEEEET
T ss_pred             CeecCHHHHHHHH-hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHHHHHhCCccccCEEEEEEC
Confidence            4578899999876 6678999999999999999999999999999976 9999999999999999999999999999977


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |    .....+.|..+.+.+.+|+.+..
T Consensus        79 g----~~~~~~~g~~~~~~l~~~l~~~l  102 (104)
T 2e0q_A           79 G----EPVDEIIGAVPREEIEIRIKNLL  102 (104)
T ss_dssp             T----EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             C----eEhhhccCCCCHHHHHHHHHHHh
Confidence            7    34567889999999999998754

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.57  E-value=6.5e-15  Score=117.34  Aligned_cols=108  Identities=44%  Similarity=0.885  Sum_probs=93.9

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCcccHhhhhhcCcccccE
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE---GKVKLGAVDATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~---~~i~f~~v~~~~~~~l~~~~~i~~~P~  213 (461)
                      ...+..++.++|.+.+ ..+++++|.||++||++|+.+.+.+.++++.++   ..+.|+.+|++.+..++++|++.++|+
T Consensus         6 ~~~v~~l~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   84 (120)
T 1mek_A            6 EDHVLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             ETTEEECCTTTHHHHH-HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCcEEechhhHHHHH-ccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccE
Confidence            3458899999999875 567899999999999999999999999999886   369999999999999999999999999


Q ss_pred             EEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +++|++|..  .....|.|..+.+.|.+|+.+..
T Consensus        85 ~~~~~~g~~--~~~~~~~g~~~~~~l~~~l~~~~  116 (120)
T 1mek_A           85 IKFFRNGDT--ASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             EEEEESSCS--SSCEECCCCSSHHHHHHHHHTTS
T ss_pred             EEEEeCCCc--CCcccccCccCHHHHHHHHHhcc
Confidence            999987721  01267899999999999998765

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.57  E-value=6.8e-15  Score=125.44  Aligned_cols=108  Identities=8%  Similarity=0.171  Sum_probs=87.8

Q ss_pred             CCceEcCccchhHHHh----cCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCchhh--------
Q psy17502         16 SDVIKLTTSNFDDKVI----KSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEEKSL--------   80 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~----~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~~~l--------   80 (461)
                      .....++..+|++ .+    .++++++|.|||+||++|+.+.+.+   .++++.+++++.++.||+++.+++        
T Consensus        26 ~~~~~~~~~~~~~-~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~  104 (172)
T 3f9u_A           26 TNEVHAKFDDYDL-GMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIME  104 (172)
T ss_dssp             --CCCCCBSCHHH-HHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEE
T ss_pred             CcccccchhhHHH-HHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhh
Confidence            3455677788887 44    5788999999999999999985555   555555555799999999987765        


Q ss_pred             ------------------HhhcCCCCccEEEEE-cCCCCCccccCCcc-hhHHHHHHHHHHhhh
Q psy17502         81 ------------------SSSHGVTGFPTVKIF-SDKRNPTPYQGART-ADAIIDVALEAIRQK  124 (461)
Q Consensus        81 ------------------~~~~~i~~~P~l~~~-~~g~~~~~y~g~~~-~~~i~~~i~~~~~~~  124 (461)
                                        +++|+|.++||++++ .+|+.+.++.|..+ .+++.+++.+.+...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~  168 (172)
T 3f9u_A          105 NGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENY  168 (172)
T ss_dssp             TTEEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence                              789999999999999 58888888999998 999999999887543

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.57  E-value=3.3e-15  Score=114.12  Aligned_cols=98  Identities=15%  Similarity=0.175  Sum_probs=82.7

Q ss_pred             CCceEc-CccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCC-c
Q psy17502         16 SDVIKL-TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTG-F   89 (461)
Q Consensus        16 ~~v~~l-~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~-~   89 (461)
                      .....| |.++|++ +++++++++|.|+|.|||+|+.+.|.|+++++.  +++.++.||.++.++    +++++||++ .
T Consensus         6 ~~~~~i~s~e~f~~-ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h~s   82 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQ-VIEENKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKHES   82 (112)
T ss_dssp             GCEEECCSHHHHHH-HHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCCCS
T ss_pred             cceeecCCHHHHHH-HHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCccCC
Confidence            456667 4567888 888899999999999999999999999999985  569999999999977    799999995 9


Q ss_pred             cEEEEEcCCCCCcc-ccCCcchhHHHHH
Q psy17502         90 PTVKIFSDKRNPTP-YQGARTADAIIDV  116 (461)
Q Consensus        90 P~l~~~~~g~~~~~-y~g~~~~~~i~~~  116 (461)
                      |++++|++|+.+.. -.|..+.+.|.+.
T Consensus        83 Pq~il~k~G~~v~~~SH~~I~~~~l~~~  110 (112)
T 3iv4_A           83 PQAFYFVNGEMVWNRDHGDINVSSLAQA  110 (112)
T ss_dssp             SEEEEEETTEEEEEEEGGGCSHHHHHHH
T ss_pred             CeEEEEECCEEEEEeeccccCHHHHHHh
Confidence            99999999977655 3567777776654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.57  E-value=2.3e-14  Score=111.42  Aligned_cols=102  Identities=25%  Similarity=0.540  Sum_probs=89.1

Q ss_pred             eeEcCh-hhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        140 VVELTD-SNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       140 v~~l~~-~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      +..+++ +++.+.+.+ .+++++|.||++||++|+.+.+.+.++++.+++.+.|+.+|++.+.+++++|++.++|+++++
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFL   81 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEE
Confidence            456766 888887643 678999999999999999999999999999988899999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ++|    .....+.| .+.+.+.+|+.+.
T Consensus        82 ~~G----~~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           82 KNG----VKVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             ETT----EEEEEEES-CCHHHHHHHHHHT
T ss_pred             cCC----cEEEEEcC-CCHHHHHHHHHHh
Confidence            877    35567788 7889999998763

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.57  E-value=5.7e-15  Score=114.77  Aligned_cols=97  Identities=14%  Similarity=0.133  Sum_probs=76.1

Q ss_pred             ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCC
Q psy17502        144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRS  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~  223 (461)
                      +.++|.+.+ +++++++|.||++||++|+.+.+.+.++++.+ +.+.|+.+|++.+++++++|+|.++|++++|++|   
T Consensus         7 ~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~-~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G---   81 (105)
T 4euy_A            7 TIEELATYI-EEQQLVLLFIKTENCGVCDVMLRKVNYVLENY-NYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNG---   81 (105)
T ss_dssp             ---CCSSST-TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTC-TTEEEEEEEECCC---------CCCCEEEEEETT---
T ss_pred             CHHHHHHHH-hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHc-CCceEEEEECCCCHHHHHhcCCCCCCEEEEEeCC---
Confidence            556777765 67899999999999999999999999999998 5799999999999999999999999999999877   


Q ss_pred             CcCcccccCCCCHHHHHHHHHhh
Q psy17502        224 ASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       224 ~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                       .....+.|..+.+.|.+++.+.
T Consensus        82 -~~~~~~~g~~~~~~l~~~l~~~  103 (105)
T 4euy_A           82 -KEILRESRFISLENLERTIQLF  103 (105)
T ss_dssp             -EEEEEEESSCCHHHHHHHHHTT
T ss_pred             -eEEEEEeCCcCHHHHHHHHHHh
Confidence             4566788999999999999764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.57  E-value=1.4e-13  Score=123.80  Aligned_cols=202  Identities=14%  Similarity=0.167  Sum_probs=144.7

Q ss_pred             hhhhhhhhhcCCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHh---cCc--eEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        145 DSNFEKLVYNSDDIWLVEFFAPW--CGHCKNLEPHWEKAASEL---EGK--VKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~~a~~~---~~~--i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      .+++.+.+..-..+++|.||++|  |++|+.+.+.+.++|+..   +++  +.|+.+|++.+++++++|||.++|++.+|
T Consensus        14 ~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~   93 (243)
T 2hls_A           14 RRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL   93 (243)
T ss_dssp             HHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET
T ss_pred             HHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE
Confidence            35566665555678999999999  999999999999999874   344  99999999999999999999999999998


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHHHHHHHh-cCCCeEE-EEEeCCccccChhhHHHHH
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEATFKEAC-EDHPLCI-VAVLPHILDCQSSCRNNYL  295 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~~~~~~~-~~~~~~~-i~~~~~~~~~~~~~~~~~~  295 (461)
                       ++      ...|.|......+..|+..........+.   + ++....... ...++.+ .++.|+     ........
T Consensus        94 -~g------~~~~~G~~~~~~l~~fv~~~l~~~~~~~~---l-~~~~~~~~~~~~~~~~vv~F~a~w-----C~~C~~~~  157 (243)
T 2hls_A           94 -GG------EVRWTGIPAGEEIRALVEVIMRLSEDESG---L-EDATKEALKSLKGRVHIETIITPS-----CPYCPYAV  157 (243)
T ss_dssp             -TT------TEEEESCCCTTHHHHHHHHHHHHHTTCCC---C-CHHHHHHHHHCCSCEEEEEEECSS-----CSSHHHHH
T ss_pred             -CC------ceeEcCCCcHHHHHHHHHHHHhccCCCCC---C-CHHHHHHHHHcCCCcEEEEEECCC-----CCCcHHHH
Confidence             32      45688877777888887664321111111   2 233333322 2234434 444455     44566777


Q ss_pred             HHHHHHHHhcc----CcceEEEecccccchhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHHHhcCC
Q psy17502        296 EILQKLGDKYK----QKVWGWIWSEAVAQPDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGR  370 (461)
Q Consensus       296 ~~~~~va~~~~----~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~Gk  370 (461)
                      ..+.++|..++    .. +.+..+|....+++++.+|+.  .+|++++   ++. . .+.|..+.+.|.+|+...+...
T Consensus       158 p~l~~la~~~~~~~~~~-v~~~~vd~~~~~~~~~~~~V~--~vPt~~i---~G~-~-~~~G~~~~~~l~~~l~~~~~~~  228 (243)
T 2hls_A          158 LLAHMFAYEAWKQGNPV-ILSEAVEAYENPDIADKYGVM--SVPSIAI---NGY-L-VFVGVPYEEDFLDYVKSAAEGR  228 (243)
T ss_dssp             HHHHHHHHHHHHTTCCC-EEEEEEETTTCHHHHHHTTCC--SSSEEEE---TTE-E-EEESCCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccccCCc-EEEEEEECccCHHHHHHcCCe--eeCeEEE---CCE-E-EEeCCCCHHHHHHHHHHHhhcc
Confidence            88999999883    23 466667766778899999998  6999988   232 2 2567889999999999988543

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.56  E-value=3.1e-14  Score=111.76  Aligned_cols=104  Identities=26%  Similarity=0.427  Sum_probs=89.6

Q ss_pred             CCceeEcChhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-ccHhhhhhcCcccccEE
Q psy17502        137 SKAVVELTDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-VHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-~~~~l~~~~~i~~~P~i  214 (461)
                      ...+..++.++|.+.+.+ .+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++ .+.+++++|++.++|++
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~~v~~~Pt~   82 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTF   82 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSBSSEE
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-CeEEEEEecCcchHHHHHHcCCCeeeEE
Confidence            456889999999988754 57899999999999999999999999999986 4999999998 68899999999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +++++|    .....+.|. +.+.|.+++.+.
T Consensus        83 ~~~~~G----~~~~~~~G~-~~~~l~~~l~~~  109 (111)
T 2pu9_C           83 KILKEN----SVVGEVTGA-KYDKLLEAIQAA  109 (111)
T ss_dssp             EEESSS----SEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEeCC----cEEEEEcCC-CHHHHHHHHHHh
Confidence            999877    345567787 488999998764

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.56  E-value=3.1e-14  Score=111.00  Aligned_cols=101  Identities=21%  Similarity=0.360  Sum_probs=86.1

Q ss_pred             eeEc-Chhhhhhhhh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        140 VVEL-TDSNFEKLVY-NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       140 v~~l-~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      +..+ +.++|.+.+. ..+++++|.||++||++|+.+.+.+.++++.+ +.+.|+.+|++.+++++++|++.++|++++|
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQCQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECccCHHHHHhcCCCcccEEEEE
Confidence            4555 6688888764 36789999999999999999999999999998 5799999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ++|    .....+.|. +.++|.+|+.+.
T Consensus        82 ~~G----~~~~~~~G~-~~~~l~~~l~~~  105 (107)
T 1gh2_A           82 RNK----VRIDQYQGA-DAVGLEEKIKQH  105 (107)
T ss_dssp             ETT----EEEEEEESS-CHHHHHHHHHHH
T ss_pred             ECC----eEEEEEeCC-CHHHHHHHHHHh
Confidence            877    345567884 456699998764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.55  E-value=3.1e-14  Score=113.87  Aligned_cols=104  Identities=17%  Similarity=0.372  Sum_probs=91.7

Q ss_pred             CceeEcChhhhhhhhhc---CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        138 KAVVELTDSNFEKLVYN---SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      +.+..++.++|.+.+.+   .+++++|.||++||++|+.+.+.|.++++.+.+ +.|+.+|++.+.+++++|++.++|++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~   91 (122)
T 2vlu_A           13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPTF   91 (122)
T ss_dssp             CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCHHHHHHcCCCcccEE
Confidence            44666788999988755   688999999999999999999999999999876 99999999999999999999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +++++|    .....+.|.. .+.|.+|+.+..
T Consensus        92 ~~~~~G----~~~~~~~G~~-~~~l~~~l~~~l  119 (122)
T 2vlu_A           92 LFMKEG----DVKDRVVGAI-KEELTAKVGLHA  119 (122)
T ss_dssp             EEEETT----EEEEEEESSC-HHHHHHHHHHHH
T ss_pred             EEEeCC----EEEEEEeCcC-HHHHHHHHHHHh
Confidence            999877    3556788988 999999998764

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.55  E-value=2.6e-14  Score=112.37  Aligned_cols=104  Identities=22%  Similarity=0.472  Sum_probs=90.4

Q ss_pred             ceeEc-Chhhhhhhhhc-C--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        139 AVVEL-TDSNFEKLVYN-S--DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       139 ~v~~l-~~~~~~~~~~~-~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      .+..+ +.+++.+.+.+ .  +++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|++.++|++
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   82 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF   82 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEE
Confidence            46677 56888887643 2  78999999999999999999999999999987899999999999999999999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +++++|    .....+.|. +.+.|.+|+.+..
T Consensus        83 ~~~~~G----~~~~~~~G~-~~~~l~~~l~~~l  110 (112)
T 1ep7_A           83 HVYKDG----VKADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             EEEETT----EEEEEEESC-CHHHHHHHHHHHH
T ss_pred             EEEECC----eEEEEEcCC-CHHHHHHHHHHHh
Confidence            999877    345568888 8999999998754

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.55  E-value=4e-14  Score=113.59  Aligned_cols=101  Identities=26%  Similarity=0.378  Sum_probs=89.8

Q ss_pred             eeEcCh-hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        140 VVELTD-SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       140 v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      +..+++ ++|.+.+ ..+++++|.||++||++|+.+.+.+.++++.+ +.+.|+.+|++.+.+++++|+|.++|++++|+
T Consensus        21 v~~l~~~~~f~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~~   98 (125)
T 1r26_A           21 VVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDADNNSEIVSKCRVLQLPTFIIAR   98 (125)
T ss_dssp             CEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             eEECCCHHHHHHHH-ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHcCCCcccEEEEEe
Confidence            778888 9999876 77889999999999999999999999999998 46999999999999999999999999999998


Q ss_pred             CCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        219 PGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +|    .....+.| .+.+.|.+||.+..
T Consensus        99 ~G----~~~~~~~G-~~~~~l~~~l~~~l  122 (125)
T 1r26_A           99 SG----KMLGHVIG-ANPGMLRQKLRDII  122 (125)
T ss_dssp             TT----EEEEEEES-SCHHHHHHHHHHHH
T ss_pred             CC----eEEEEEeC-CCHHHHHHHHHHHh
Confidence            77    34556788 68899999997654

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.55  E-value=4.5e-14  Score=110.43  Aligned_cols=101  Identities=23%  Similarity=0.444  Sum_probs=87.9

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      .....+.++|++.+ ..+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++.+.+++++|+|.++|++++|+
T Consensus         8 ~~~~~~~~~f~~~~-~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   85 (109)
T 3f3q_A            8 VTQFKTASEFDSAI-AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQKNEVSAMPTLLLFK   85 (109)
T ss_dssp             CEECCSHHHHHHHT-TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             ccCCCCHHHHHHHH-hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCccCEEEEEE
Confidence            34456788998875 668999999999999999999999999999985 4999999999999999999999999999999


Q ss_pred             CCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        219 PGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|    .....+.|. +.+.|.++|.+.
T Consensus        86 ~G----~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           86 NG----KEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             TT----EEEEEEESS-CHHHHHHHHHHH
T ss_pred             CC----EEEEEEeCC-CHHHHHHHHHhh
Confidence            76    356677887 679999998764

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.55  E-value=3.7e-13  Score=121.77  Aligned_cols=204  Identities=11%  Similarity=0.087  Sum_probs=156.6

Q ss_pred             CceEcCc-cchhHHHhcC-CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         17 DVIKLTT-SNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        17 ~v~~l~~-~~f~~~~~~~-~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      .+..|++ +++++ +++. ++.++|.|++++|   ....+.|.++|+.+++.+.|+.+.   ++++++++++.+ |+|++
T Consensus         7 ~v~~l~s~~~~~~-~~~~~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~~~~F~~t~---~~~v~~~~~v~~-p~ivl   78 (250)
T 3ec3_A            7 PSKEILTLKQVQE-FLKDGDDVVILGVFQGVG---DPGYLQYQDAANTLREDYKFHHTF---STEIAKFLKVSL-GKLVL   78 (250)
T ss_dssp             SSEECCCHHHHHH-HHHHCSSCEEEEECSCTT---CHHHHHHHHHHHHHTTTCCEEEEC---CHHHHHHHTCCS-SEEEE
T ss_pred             CceecCCHHHHHH-HHhcCCCeEEEEEEcCCC---chHHHHHHHHHHhhhcCcEEEEEC---cHHHHHHcCCCC-CeEEE
Confidence            4677865 77877 7777 8999999999985   467889999999999889998874   678999999998 99999


Q ss_pred             EcCC-------CCCcccc--CCcchhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeC
Q psy17502         95 FSDK-------RNPTPYQ--GARTADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFA  165 (461)
Q Consensus        95 ~~~g-------~~~~~y~--g~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~  165 (461)
                      |+.+       .....|.  |..+.++|.+|+.....               +-+.++|.++..... . +.+.++.|+.
T Consensus        79 fk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~---------------Plv~e~t~~n~~~~~-~-~~~l~~~~~~  141 (250)
T 3ec3_A           79 MQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHAL---------------PLVGHRKTSNDAKRY-S-KRPLVVVYYS  141 (250)
T ss_dssp             ECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSS---------------CTEEEECTTTHHHHS-C-SSSEEEEEEC
T ss_pred             EecchhhccccccceeccCCCCCCHHHHHHHHHHcCC---------------CceeecCccchhhhh-c-cCccEEEEEe
Confidence            9842       3446787  57899999999998853               347799999988765 3 5666666664


Q ss_pred             -CCC---hh-hhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCccc--c-cEEEEEcCCCCCCcCccccc-CCCCH
Q psy17502        166 -PWC---GH-CKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRG--Y-PTIKFFSPGSRSASDAQEYN-GGRTS  236 (461)
Q Consensus       166 -~~c---~~-c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~--~-P~i~~~~~~~~~~~~~~~y~-g~~~~  236 (461)
                       +.+   .. ...+...+.++|+.++ ++.|+.+|+......++.+|+..  . |.++++...    .....+. +..+.
T Consensus       142 ~d~~~~~~~~~~~~~~~~~~vAk~~k-ki~F~~~d~~~~~~~l~~fgl~~~~~~p~~~~~~~~----~~ky~~~~~~~t~  216 (250)
T 3ec3_A          142 VDFSFDYRTATQFWRNKVLEVAKDFP-EYTFAIADEEDYATEVKDLGLSESGGDVNAAILDES----GKKFAMEPEEFDS  216 (250)
T ss_dssp             CCCSTTTHHHHHHHHHHHHHHHTTCT-TSEEEEEETTTTHHHHHHTTCSSCSCSCEEEEECTT----SCEEECCCCSCCH
T ss_pred             cccccccchhHHHHHHHHHHHHHhhc-ceeEEEEcHHHHHHHHHHcCCCccCCCcEEEEEcCC----CceecCCcccCCH
Confidence             322   22 2346788999999999 99999999987777788899874  3 477766533    2333444 67899


Q ss_pred             HHHHHHHHhhccCC
Q psy17502        237 QDIVTWALNKYTEN  250 (461)
Q Consensus       237 ~~i~~fi~~~~~~~  250 (461)
                      ++|.+|+.....+.
T Consensus       217 ~~i~~Fv~~~~~Gk  230 (250)
T 3ec3_A          217 DALREFVMAFKKGK  230 (250)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCC
Confidence            99999998877544

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.55  E-value=2.2e-14  Score=113.23  Aligned_cols=102  Identities=24%  Similarity=0.466  Sum_probs=86.2

Q ss_pred             CCceeEcCh-hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        137 SKAVVELTD-SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       137 ~~~v~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      ...+..+++ +++.+. .+++++++|.||++||++|+.+.+.+.++++.+.+ +.|+.+|++.+.+++++|++.++|+++
T Consensus        11 ~~~~~~~~~~~~~~~~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~   88 (114)
T 2oe3_A           11 YTSITKLTNLTEFRNL-IKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESPDIAKECEVTAMPTFV   88 (114)
T ss_dssp             GGGSCBCCSHHHHHHH-HHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSBSEEE
T ss_pred             hhheeecCCHHHHHHH-HhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCcccEEE
Confidence            345566655 455554 56788999999999999999999999999999876 999999999999999999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      ++++|    .....+.|.. .+.|.+|+.+
T Consensus        89 ~~~~G----~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           89 LGKDG----QLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEETT----EEEEEEESSC-HHHHHHHHHT
T ss_pred             EEeCC----eEEEEEeCCC-HHHHHHHHHh
Confidence            99877    3556688888 8999998864

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.54  E-value=1.6e-14  Score=116.63  Aligned_cols=91  Identities=20%  Similarity=0.343  Sum_probs=82.9

Q ss_pred             hhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccc
Q psy17502        151 LVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEY  230 (461)
Q Consensus       151 ~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y  230 (461)
                      .....+++++|.||++||++|+.+.+.+.++++.+++.+.|+.+|++.+.+++++|+|.++|+++++++|    .....+
T Consensus        37 ~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G----~~~~~~  112 (128)
T 3ul3_B           37 GVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNK----TMLARK  112 (128)
T ss_dssp             BTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETT----EEEEEE
T ss_pred             HHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECC----EEEEEe
Confidence            3356789999999999999999999999999999988899999999999999999999999999999877    456678


Q ss_pred             cCCCCHHHHHHHHHh
Q psy17502        231 NGGRTSQDIVTWALN  245 (461)
Q Consensus       231 ~g~~~~~~i~~fi~~  245 (461)
                      .|..+.++|.+|+.+
T Consensus       113 ~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          113 DHFVSSNDLIALIKK  127 (128)
T ss_dssp             SSCCCHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHh
Confidence            999999999999864

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.54  E-value=2.8e-14  Score=132.34  Aligned_cols=107  Identities=23%  Similarity=0.435  Sum_probs=96.4

Q ss_pred             CCceeEcChhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        137 SKAVVELTDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      ++.|+.+|.++|++.+.. .+++++|.||++||++|+.+.|.|.++++.+.+.+.|+.||++.+++++++|+|.++||++
T Consensus         6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   85 (287)
T 3qou_A            6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVY   85 (287)
T ss_dssp             CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEEE
T ss_pred             CCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeEE
Confidence            456889999999997643 3789999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +|++|    .....+.|..+.+.+..|+....
T Consensus        86 ~~~~G----~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           86 LFQNG----QPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEETT----EEEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEECC----EEEEEeeCCCCHHHHHHHHHHHc
Confidence            99877    35667899999999999998765

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.54  E-value=3.6e-14  Score=111.61  Aligned_cols=104  Identities=22%  Similarity=0.504  Sum_probs=90.9

Q ss_pred             CCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       136 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      .++....++.++|.+.+ +.+++++|.|+++||++|+.+.+.+.++++.+. .+.|+.+|++.+.+++++|+|.++|+++
T Consensus         7 ~~~~~~~~~~~~f~~~~-~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~   84 (112)
T 1syr_A            7 HHMVKIVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFK   84 (112)
T ss_dssp             --CCEEECSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             ceeEEEECCHHHHHHHH-ccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCHHHHHHcCCCcccEEE
Confidence            34567788999999976 577899999999999999999999999999886 5999999999999999999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ++++|    .....+.|. +.+.|.+|+.+.
T Consensus        85 ~~~~G----~~~~~~~G~-~~~~l~~~l~~~  110 (112)
T 1syr_A           85 VYKNG----SSVDTLLGA-NDSALKQLIEKY  110 (112)
T ss_dssp             EEETT----EEEEEEESC-CHHHHHHHHHTT
T ss_pred             EEECC----cEEEEEeCC-CHHHHHHHHHHh
Confidence            99877    345568888 999999999764

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.54  E-value=6.7e-15  Score=114.22  Aligned_cols=91  Identities=16%  Similarity=0.197  Sum_probs=73.9

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC--CceEEEEEecCCc--hhhHhhcCCCCccEEEEEcCCCCCccccCCc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADEE--KSLSSSHGVTGFPTVKIFSDKRNPTPYQGAR  108 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~--~~v~~~~vd~~~~--~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~  108 (461)
                      +...+||+|||+||++|+.+.+++........  ..+.+.+||.+++  ++++.+++|.++||+++|++|+.+.+..|..
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~   96 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYP   96 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCC
Confidence            35689999999999999999875543322110  1267888998875  5899999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHhh
Q psy17502        109 TADAIIDVALEAIRQ  123 (461)
Q Consensus       109 ~~~~i~~~i~~~~~~  123 (461)
                      ..+.+..|+...+..
T Consensus        97 ~~~~f~~~L~~~l~~  111 (116)
T 3dml_A           97 GEDFFWPMLARLIGQ  111 (116)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999987643

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3.2e-15  Score=122.36  Aligned_cols=104  Identities=20%  Similarity=0.473  Sum_probs=88.3

Q ss_pred             CCceeEcChhhhhhhhhcCC-CeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcc-----
Q psy17502        137 SKAVVELTDSNFEKLVYNSD-DIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIR-----  209 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~-----  209 (461)
                      +..+..++.++|.+.+.+.. .+++|.||++||++|+.+.+.|.++++.+.+ .+.|+.+|++.+++++++|+|.     
T Consensus         6 ~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~   85 (137)
T 2dj0_A            6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLT   85 (137)
T ss_dssp             CSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSS
T ss_pred             CceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCc
Confidence            45688899999998875544 3899999999999999999999999999985 7999999999999999999998     


Q ss_pred             -cccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502        210 -GYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       210 -~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~  244 (461)
                       ++|++++|++|    .....+.|..+.+.|.+|+.
T Consensus        86 ~~~Pt~~~~~~G----~~~~~~~G~~~~~~l~~~l~  117 (137)
T 2dj0_A           86 KQLPTLILFQGG----KEAMRRPQIDKKGRAVSWTF  117 (137)
T ss_dssp             SCSSEEEEESSS----SEEEEESCBCSSSCBCCCCC
T ss_pred             CCCCEEEEEECC----EEEEEecCcCchHHHHHHHh
Confidence             99999999877    34556778777666655553

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.54  E-value=3e-14  Score=117.00  Aligned_cols=105  Identities=28%  Similarity=0.521  Sum_probs=80.6

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ..+..++.++|.+.+.+.+. ++|.||++||++|+.+.+.+.+++..+.+.+.|+.+|++.+.+++++|++.++|++++|
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  111 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLF  111 (140)
T ss_dssp             ----------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CccccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEE
Confidence            45678899999887655555 99999999999999999999999999987899999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|    .....+.|..+.+.|.+||.+..
T Consensus       112 ~~G----~~~~~~~G~~~~~~l~~~i~~~l  137 (140)
T 1v98_A          112 RRG----APVATWVGASPRRVLEERLRPYL  137 (140)
T ss_dssp             ETT----EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCC----cEEEEEeCCCCHHHHHHHHHHHH
Confidence            877    35567889999999999998764

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.53  E-value=6.8e-14  Score=110.02  Aligned_cols=103  Identities=23%  Similarity=0.422  Sum_probs=84.8

Q ss_pred             eeEcCh-hhhhhhhh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        140 VVELTD-SNFEKLVY--NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       140 v~~l~~-~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      +..+++ ++|.+.+.  ..+++++|.||++||++|+.+.+.+.++++.++ +.+.|+.+|++.+.+++++|++.++|+++
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   81 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFI   81 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEE
Confidence            567776 88988764  237899999999999999999999999999863 56999999999999999999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +|++|    .....+.|. ..++|.+|+.+..
T Consensus        82 ~~~~G----~~~~~~~G~-~~~~l~~~l~~~~  108 (112)
T 3d6i_A           82 IIHKG----TILKELSGA-DPKEYVSLLEDCK  108 (112)
T ss_dssp             EEETT----EEEEEECSC-CHHHHHHHHHHHH
T ss_pred             EEECC----EEEEEecCC-CHHHHHHHHHHHH
Confidence            99877    355567787 4556999987653

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.53  E-value=1.1e-13  Score=110.98  Aligned_cols=106  Identities=22%  Similarity=0.446  Sum_probs=90.4

Q ss_pred             CCCCceeEc-Chhhhhhhhhc---CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCccc
Q psy17502        135 GSSKAVVEL-TDSNFEKLVYN---SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRG  210 (461)
Q Consensus       135 ~~~~~v~~l-~~~~~~~~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~  210 (461)
                      +....+..+ +.+++++.+..   .+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++.+.+++++|+|.+
T Consensus        13 ~~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~   91 (124)
T 1xfl_A           13 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQA   91 (124)
T ss_dssp             CCCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCS
T ss_pred             cCCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHHcCCCc
Confidence            344557777 67888877654   57899999999999999999999999999986 79999999999999999999999


Q ss_pred             ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        211 YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       211 ~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|+++++++|    .....+.| .+.+.|.++|.+.
T Consensus        92 ~Pt~~~~~~G----~~~~~~~G-~~~~~l~~~l~~~  122 (124)
T 1xfl_A           92 MPTFMFLKEG----KILDKVVG-AKKDELQSTIAKH  122 (124)
T ss_dssp             SSEEEEEETT----EEEEEEES-CCHHHHHHHHHHH
T ss_pred             cCEEEEEECC----EEEEEEeC-CCHHHHHHHHHHh
Confidence            9999999877    34556778 5889999998764

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.52  E-value=5.6e-14  Score=116.39  Aligned_cols=101  Identities=19%  Similarity=0.274  Sum_probs=89.3

Q ss_pred             cChhhhhhhhh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCC
Q psy17502        143 LTDSNFEKLVY-NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGS  221 (461)
Q Consensus       143 l~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~  221 (461)
                      .+.+++++.+. +.+++++|.||++||++|+.+.|.+.++++.+.+.+.|+.+|++.+++++++|+|.++|+++++++| 
T Consensus         9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G-   87 (149)
T 3gix_A            9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNG-   87 (149)
T ss_dssp             CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEEETT-
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEEECC-
Confidence            46788888775 5689999999999999999999999999999988899999999999999999999999999999987 


Q ss_pred             CCCcCc---------ccccC-CCCHHHHHHHHHhhc
Q psy17502        222 RSASDA---------QEYNG-GRTSQDIVTWALNKY  247 (461)
Q Consensus       222 ~~~~~~---------~~y~g-~~~~~~i~~fi~~~~  247 (461)
                         ...         ..+.| ..+.++|.+++....
T Consensus        88 ---~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           88 ---QHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             ---EEEEEECSSSCCSCEESCCSSHHHHHHHHHHHH
T ss_pred             ---eEEEeecCCCCCCeEeeecCCHHHHHHHHHHHH
Confidence               344         57788 788999999987653

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.52  E-value=8.4e-14  Score=108.01  Aligned_cols=97  Identities=25%  Similarity=0.537  Sum_probs=85.4

Q ss_pred             Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCC
Q psy17502        144 TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSR  222 (461)
Q Consensus       144 ~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~  222 (461)
                      +.+++++.+.+ .+++++|.||++||++|+.+.+.+.++++.+.+ +.|+.+|++.+++++++|++.++|++++|++|  
T Consensus         7 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g--   83 (105)
T 3m9j_A            7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEVKSMPTFQFFKKG--   83 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEEETT--
T ss_pred             CHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhHHHHHHcCCCcCcEEEEEECC--
Confidence            56777776532 578999999999999999999999999999865 99999999999999999999999999999877  


Q ss_pred             CCcCcccccCCCCHHHHHHHHHhh
Q psy17502        223 SASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       223 ~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                        .....+.|. +.+.|.+|+.+.
T Consensus        84 --~~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           84 --QKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             --EEEEEEESS-CHHHHHHHHHHH
T ss_pred             --eEEEEEeCC-CHHHHHHHHHHh
Confidence              456678898 999999999764

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.28  E-value=8.9e-16  Score=124.46  Aligned_cols=99  Identities=16%  Similarity=0.199  Sum_probs=85.5

Q ss_pred             cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecC--CchhhHhhcCCCCccEEEEE--c
Q psy17502         24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNAD--EEKSLSSSHGVTGFPTVKIF--S   96 (461)
Q Consensus        24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~--~   96 (461)
                      +.+.. ...++++++|+||++||++|+.+.|.+   .++++.+++++.++.||++  ++.+++++|+|.++|++++|  +
T Consensus        10 ~~~~~-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~   88 (130)
T 2lst_A           10 EALAL-AQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPK   88 (130)
Confidence            34444 556778999999999999999999999   9999888878999999994  56889999999999999999  5


Q ss_pred             CCCC--CccccCCcchhHHHHHHHHHHhh
Q psy17502         97 DKRN--PTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        97 ~g~~--~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      +|+.  ..++.|..+.+.+.+++.+.+..
T Consensus        89 ~G~~~~~~~~~G~~~~~~l~~~l~~~~~~  117 (130)
T 2lst_A           89 AGAWEEVGRLFGSRPRAEFLKELRQVCVK  117 (130)
Confidence            6766  77899999999999999887643

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.52  E-value=9.9e-14  Score=107.37  Aligned_cols=100  Identities=26%  Similarity=0.599  Sum_probs=86.2

Q ss_pred             eEcCh-hhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        141 VELTD-SNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       141 ~~l~~-~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      ..+++ +++.+.+.+ .+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++.+++++++|++.++|++++++
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK   80 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCHHHHHHcCCccccEEEEEe
Confidence            35555 788887643 67899999999999999999999999999885 7999999999999999999999999999998


Q ss_pred             CCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        219 PGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|    .....+.| .+.+++.+|+.+.
T Consensus        81 ~g----~~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           81 DG----KEVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             TT----EEEEEEES-SCHHHHHHHHHHH
T ss_pred             CC----cEEEEEeC-CCHHHHHHHHHhh
Confidence            77    35566788 6899999998764

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.52  E-value=6e-14  Score=111.28  Aligned_cols=101  Identities=23%  Similarity=0.487  Sum_probs=87.9

Q ss_pred             ceeEcCh-hhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        139 AVVELTD-SNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       139 ~v~~l~~-~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      .+..+++ +++.+.+.+ .+++++|.||++||++|+.+.+.+.++++.+  .+.|+.+|++.+.+++++|+|.++|++++
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   91 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEETARKYNISAMPTFIA   91 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHHHHHHcCCCccceEEE
Confidence            3778877 888887643 6789999999999999999999999999887  79999999999999999999999999999


Q ss_pred             EcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        217 FSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +++|    .....+.| .+.+.|.+|+.+.
T Consensus        92 ~~~G----~~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           92 IKNG----EKVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             EETT----EEEEEEES-SCHHHHHHHHHHH
T ss_pred             EeCC----cEEEEEeC-CCHHHHHHHHHHh
Confidence            9877    35566788 6888999998764

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.51  E-value=1.2e-13  Score=108.83  Aligned_cols=100  Identities=12%  Similarity=0.189  Sum_probs=83.3

Q ss_pred             ceeEcChhhhhhhhhcCCC--eEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        139 AVVELTDSNFEKLVYNSDD--IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~--~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      .+..++.++|.+.+.+++.  +++|.||++||++|+.+.|.++++|+.+. .+.|+++|++..   +.+|+|.+.||+++
T Consensus         4 ~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~~---~~~~~v~~~PT~~~   79 (118)
T 3evi_A            4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNSC---IQHYHDNCLPTIFV   79 (118)
T ss_dssp             SCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGGT---STTCCGGGCSEEEE
T ss_pred             ceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HHHCCCCCCCEEEE
Confidence            3678899999987766554  89999999999999999999999999985 699999998764   58999999999999


Q ss_pred             EcCCCCCCcCcccccC-------CCCHHHHHHHHHhh
Q psy17502        217 FSPGSRSASDAQEYNG-------GRTSQDIVTWALNK  246 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g-------~~~~~~i~~fi~~~  246 (461)
                      |++|    .....+.|       ..+.++|..|+.+.
T Consensus        80 fk~G----~~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           80 YKNG----QIEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             EETT----EEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             EECC----EEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            9998    33444443       35789998888764

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.51  E-value=3.6e-14  Score=116.08  Aligned_cols=103  Identities=12%  Similarity=0.134  Sum_probs=78.8

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHhcCceE--EEEEeCcccHhhhhhcCcccccEE
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPW--CGHCKNLEPHWEKAASELEGKVK--LGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~~a~~~~~~i~--f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      .+..++.++|++.+ .++..++|.|+++|  |++|+.+.|.|.++++.+ +.+.  |+.||++.+++++++|+|.++||+
T Consensus        18 ~~~~l~~~~f~~~i-~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~   95 (142)
T 2es7_A           18 GWQPVEASTVDDWI-KRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEAIGDRFNVRRFPAT   95 (142)
T ss_dssp             TCEECCCC---------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHHHHHTTTCCSSSEE
T ss_pred             cCcccccccHHHHH-HhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHHHHHhcCCCcCCeE
Confidence            46788999999876 45566888888877  999999999999999999 7888  999999999999999999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|++|    ....++.|..+.+.|.+|+.+..
T Consensus        96 ~~fk~G----~~v~~~~G~~~~~~l~~~i~~~l  124 (142)
T 2es7_A           96 LVFTDG----KLRGALSGIHPWAELLTLMRSIV  124 (142)
T ss_dssp             EEESCC--------CEESCCCHHHHHHHHHHHH
T ss_pred             EEEeCC----EEEEEEeCCCCHHHHHHHHHHHh
Confidence            999887    45667899999999999998876

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.51  E-value=1.2e-13  Score=111.03  Aligned_cols=106  Identities=13%  Similarity=0.124  Sum_probs=88.9

Q ss_pred             eeEcChhhhh-----hhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe--CcccHhhhhhcCccccc
Q psy17502        140 VVELTDSNFE-----KLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD--ATVHQRIAGEFNIRGYP  212 (461)
Q Consensus       140 v~~l~~~~~~-----~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~--~~~~~~l~~~~~i~~~P  212 (461)
                      +..++.++++     .. ...+++++|.||++||++|+.+.+.+.++++.+.+.+.|+.+|  ++.+.+++++|+|.++|
T Consensus         6 ~~~l~~~~~~~~~~~~~-~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~P   84 (126)
T 2l57_A            6 IKQINFQSINVVENLEE-AKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVP   84 (126)
T ss_dssp             SSCTTTTCCSEESSTTT-CCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSS
T ss_pred             cCCCCccccchhHHHHH-HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCccee
Confidence            4455555554     32 3567899999999999999999999999999998889999999  98899999999999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhccC
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTE  249 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~  249 (461)
                      +++++..++   .....+.|..+.+.|.+|+.+....
T Consensus        85 t~~~~~~~G---~~~~~~~G~~~~~~l~~~l~~~~~~  118 (126)
T 2l57_A           85 TTVFLDKEG---NKFYVHQGLMRKNNIETILNSLGVK  118 (126)
T ss_dssp             EEEEECTTC---CEEEEEESCCCHHHHHHHHHHHCCC
T ss_pred             EEEEECCCC---CEEEEecCCCCHHHHHHHHHHHhcc
Confidence            999999432   2455788999999999999987643

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.50  E-value=1.5e-13  Score=110.18  Aligned_cols=104  Identities=27%  Similarity=0.472  Sum_probs=89.5

Q ss_pred             CCceeEcChhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-ccHhhhhhcCcccccEE
Q psy17502        137 SKAVVELTDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-VHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-~~~~l~~~~~i~~~P~i  214 (461)
                      ...+..++.+++.+.+.+ .+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++ .+.+++++|++.++|++
T Consensus        17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~v~~~Pt~   95 (124)
T 1faa_A           17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTF   95 (124)
T ss_dssp             TTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSSSSEE
T ss_pred             CCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-CCEEEEEecCcchHHHHHHcCCCeeeEE
Confidence            356888999999887653 67899999999999999999999999999886 5999999998 68899999999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +++++|    .....+.|.. .+++.+++.+.
T Consensus        96 ~~~~~G----~~~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           96 KILKEN----SVVGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             EEEETT----EEEEEEESSC-HHHHHHHHHHH
T ss_pred             EEEeCC----cEEEEEcCCC-HHHHHHHHHHh
Confidence            999887    3455677875 88999998764

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.50  E-value=1.6e-13  Score=122.39  Aligned_cols=103  Identities=14%  Similarity=0.276  Sum_probs=90.5

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEe--CCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCcc-----cHhhhhhc
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFF--APWCGHCKNLEPHWEKAASELE---GKVKLGAVDATV-----HQRIAGEF  206 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~--~~~c~~c~~~~~~~~~~a~~~~---~~i~f~~v~~~~-----~~~l~~~~  206 (461)
                      ...++.++..+|++. .+++.+++|.||  +|||+    +.|.|.++|+.+.   +.+.|+.|||+.     ++++|.+|
T Consensus        15 ~~~v~~Lt~~nF~~v-i~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~   89 (248)
T 2c0g_A           15 CTGCVDLDELSFEKT-VERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY   89 (248)
T ss_dssp             CTTCEECCTTTHHHH-HTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT
T ss_pred             CCCcEECCHHHHHHH-HhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh
Confidence            456889999999995 477889999999  99987    9999999999984   479999999998     89999999


Q ss_pred             Ccc--cccEEEEEcCCCCCCcCcccc--cCCCCHHHHHHHHHhhc
Q psy17502        207 NIR--GYPTIKFFSPGSRSASDAQEY--NGGRTSQDIVTWALNKY  247 (461)
Q Consensus       207 ~i~--~~P~i~~~~~~~~~~~~~~~y--~g~~~~~~i~~fi~~~~  247 (461)
                      +|.  ++||+++|+ |..  .....|  .|.++.+.|.+||.++.
T Consensus        90 ~V~~~~~PTl~~F~-G~~--~~~~~y~~~G~~~~~~L~~fi~~~~  131 (248)
T 2c0g_A           90 KVDDKNFPSIFLFK-GNA--DEYVQLPSHVDVTLDNLKAFVSANT  131 (248)
T ss_dssp             TCCTTSCCEEEEES-SSS--SSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             CCCcCCCCeEEEEe-CCc--CcceeecccCCCCHHHHHHHHHHhh
Confidence            999  999999999 731  135678  89999999999999886

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.49  E-value=1e-13  Score=110.70  Aligned_cols=104  Identities=27%  Similarity=0.540  Sum_probs=90.0

Q ss_pred             CCceeEcC-hhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        137 SKAVVELT-DSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       137 ~~~v~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      ...+..++ .++|++.+ +.+++++|.||++||++|+.+.+.+.++++.+.+. +.|+.+|++.+.+++++|++.++|++
T Consensus        14 ~~~~~~i~~~~~f~~~l-~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~   92 (121)
T 2j23_A           14 RGSVQVISSYDQFKQVT-GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTF   92 (121)
T ss_dssp             CCCEEECCSHHHHHHHH-SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEE
T ss_pred             CcceEEcCCHHHHHHHH-cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEE
Confidence            34566665 48888876 77889999999999999999999999999988765 99999999999999999999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ++|++|    .....+.|. +.++|.+||.+.
T Consensus        93 ~~~~~G----~~~~~~~G~-~~~~l~~~l~~~  119 (121)
T 2j23_A           93 VFFKNG----QKIDTVVGA-DPSKLQAAITQH  119 (121)
T ss_dssp             EEEETT----EEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEECC----eEEeeEcCC-CHHHHHHHHHHh
Confidence            999877    355667888 899999999764

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.49  E-value=7.4e-15  Score=113.80  Aligned_cols=75  Identities=25%  Similarity=0.420  Sum_probs=64.7

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC------CchhhHhhcCCCCccEEEEEcCCCCCccccCC
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD------EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA  107 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~------~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~  107 (461)
                      +++++|.|||+||++|+.+.|.|++++++++      .|||+      +++++|++|+|+++||+++  +|+   .|.|.
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~---~~~G~   80 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR---TYTGV   80 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTE---EEESC
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCE---EecCC
Confidence            4567999999999999999999999997764      56776      6788999999999999887  664   49999


Q ss_pred             cchhHHHHHHHH
Q psy17502        108 RTADAIIDVALE  119 (461)
Q Consensus       108 ~~~~~i~~~i~~  119 (461)
                      ++.++|.+|+..
T Consensus        81 ~~~~~l~~~~~~   92 (106)
T 3kp8_A           81 RSLEALAVASGY   92 (106)
T ss_dssp             CCHHHHHHHHTC
T ss_pred             CCHHHHHHHhCC
Confidence            999999998753

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.49  E-value=5.3e-14  Score=111.79  Aligned_cols=101  Identities=11%  Similarity=0.128  Sum_probs=84.1

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC----cccHhhhhhcCcccccEE
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA----TVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~----~~~~~l~~~~~i~~~P~i  214 (461)
                      .+..++.+++.+.+ .++++++|.||++||++|+.+.|.+.++++.+...+.++.++.    +...+++++|+|.++|++
T Consensus        13 ~~~~~~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~   91 (118)
T 1zma_A           13 DLEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGF   91 (118)
T ss_dssp             TSEECCHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEE
T ss_pred             hhhcCCHHHHHHHH-hCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeE
Confidence            57788999998875 5678999999999999999999999999998876666664432    234578899999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~  244 (461)
                      ++|++|    .....+.|..+.+.|.+|+.
T Consensus        92 ~~~~~G----~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           92 VHITDG----QINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             EEEETT----EEEEECCTTCCHHHHHHHHT
T ss_pred             EEEECC----EEEEEecCCCCHHHHHHHhh
Confidence            999877    35567899999999999984

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.48  E-value=2.5e-14  Score=120.61  Aligned_cols=100  Identities=14%  Similarity=0.226  Sum_probs=83.1

Q ss_pred             cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh-hHhhcCC--CCccEEEEE-cCCC
Q psy17502         24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS-LSSSHGV--TGFPTVKIF-SDKR   99 (461)
Q Consensus        24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~-l~~~~~i--~~~P~l~~~-~~g~   99 (461)
                      ++|.. ...++++++|.||++||++|+.+.|.|.++++.....+.|+.||++.+++ ++.++++  .++||+++| .+|+
T Consensus        37 ~~~~~-~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~  115 (164)
T 1sen_A           37 DGKKE-AAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGK  115 (164)
T ss_dssp             HHHHH-HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSC
T ss_pred             HHHHH-HHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCC
Confidence            45555 56678899999999999999999999999877655457788899988877 8999998  569999999 5887


Q ss_pred             CCccccCC----------cchhHHHHHHHHHHhhh
Q psy17502        100 NPTPYQGA----------RTADAIIDVALEAIRQK  124 (461)
Q Consensus       100 ~~~~y~g~----------~~~~~i~~~i~~~~~~~  124 (461)
                      ...++.|.          .+.+.+.++|.+.+...
T Consensus       116 ~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~  150 (164)
T 1sen_A          116 VHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL  150 (164)
T ss_dssp             BCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhc
Confidence            77778884          78899999999877544

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.48  E-value=1.3e-13  Score=108.08  Aligned_cols=101  Identities=20%  Similarity=0.303  Sum_probs=87.3

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      +..++.++| +.+ .++++++|.||++||++|+.+.+.+.+++..+. .+.|+.+|++.+.+++++|++.++|++++|++
T Consensus         5 ~~~~~~~~f-~~~-~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   81 (110)
T 2l6c_A            5 RDITTEAGM-AHF-EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKELGFERVPTLVFIRD   81 (110)
T ss_dssp             SBCGGGCSH-HHH-TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEES
T ss_pred             eecCCHHHH-HHH-HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCHHHHHHcCCcccCEEEEEEC
Confidence            345678888 554 567899999999999999999999999998874 79999999999999999999999999999987


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |    ....++.|..+.++|.+++....
T Consensus        82 G----~~v~~~~G~~~~~~l~~~~~~~~  105 (110)
T 2l6c_A           82 G----KVAKVFSGIMNPRELQALYASIH  105 (110)
T ss_dssp             S----SEEEEEESCCCHHHHHHHHHTC-
T ss_pred             C----EEEEEEcCCCCHHHHHHHHHHHh
Confidence            7    35667889999999999998754

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.48  E-value=2.2e-13  Score=111.78  Aligned_cols=104  Identities=14%  Similarity=0.207  Sum_probs=83.2

Q ss_pred             Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCC
Q psy17502        144 TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSR  222 (461)
Q Consensus       144 ~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~  222 (461)
                      +.++|++.+.+ ++++++|.||++||++|+.+.|.+.++++.+.+.+.|+.+|++.+++++++|+|.++|++++|++|..
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G~~   89 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKH   89 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEEECCcE
Confidence            56788876655 68899999999999999999999999999998889999999999999999999999999999987721


Q ss_pred             CCc-----CcccccCCCC-HHHHHHHHHhhc
Q psy17502        223 SAS-----DAQEYNGGRT-SQDIVTWALNKY  247 (461)
Q Consensus       223 ~~~-----~~~~y~g~~~-~~~i~~fi~~~~  247 (461)
                      ...     ......|..+ .+++.+++.+..
T Consensus        90 v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~  120 (142)
T 1qgv_A           90 IMIDLGTGNNNKINWAMEDKQEMVDIIETVY  120 (142)
T ss_dssp             EEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred             EEEecCCCCcceeeeecCcHHHHHHHHHHHH
Confidence            000     0013455553 788888876643

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.47  E-value=9.5e-14  Score=113.12  Aligned_cols=101  Identities=19%  Similarity=0.295  Sum_probs=90.4

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC---------cccHhhhhhcCc
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA---------TVHQRIAGEFNI  208 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~---------~~~~~l~~~~~i  208 (461)
                      ..+..++.++|.+.+ .+  +++|.||++||++|+.+.|.+.++++.++  +.|+.+|+         +.+.+++++|+|
T Consensus        16 ~~v~~l~~~~~~~~~-~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~v   90 (135)
T 3emx_A           16 GRLIYITPEEFRQLL-QG--DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAGV   90 (135)
T ss_dssp             TEEEECCHHHHHHHH-TS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred             CceeecCHHHHHHHh-CC--cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcCC
Confidence            457889999999876 33  99999999999999999999999999885  99999999         888999999999


Q ss_pred             ccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       209 ~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      .++|+++++++|    .....+.|..+.+.+..++.+..
T Consensus        91 ~~~Pt~~~~~~G----~~v~~~~G~~~~~~~~~~i~~~~  125 (135)
T 3emx_A           91 EGTPTLVFYKEG----RIVDKLVGATPWSLKVEKAREIY  125 (135)
T ss_dssp             CSSSEEEEEETT----EEEEEEESCCCHHHHHHHHHHHC
T ss_pred             ceeCeEEEEcCC----EEEEEEeCCCCHHHHHHHHHHHh
Confidence            999999999977    45677899999999999998875

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.47  E-value=1.8e-13  Score=108.65  Aligned_cols=107  Identities=20%  Similarity=0.350  Sum_probs=87.9

Q ss_pred             ceeEc--ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        139 AVVEL--TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       139 ~v~~l--~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      .+..+  +.++|.+.+.+++++++|.||++||++|+.+.+.+.++++.+ +.+.|+.+|++.+.+++++|+|.++|++++
T Consensus         4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~   82 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGNAADAYGVSSIPALFF   82 (118)
T ss_dssp             CSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHHHHHhcCCCCCCEEEE
Confidence            35666  678888666667889999999999999999999999999998 789999999999999999999999999999


Q ss_pred             EcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        217 FSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |+++++.......+.|.. .++|.+.+.++.
T Consensus        83 ~~~~~~~G~~~~~~~G~~-~~~l~~~~~~~~  112 (118)
T 2f51_A           83 VKKEGNEIKTLDQFVGAD-VSRIKADIEKFK  112 (118)
T ss_dssp             EEEETTEEEEEEEEESCC-HHHHHHHHHHHC
T ss_pred             EeCCCCcceEEEeecCCC-HHHHHHHHHHhh
Confidence            987111003455677765 456988888775

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.47  E-value=9.9e-14  Score=115.76  Aligned_cols=89  Identities=16%  Similarity=0.303  Sum_probs=77.8

Q ss_pred             cCCCeEEEEEE-CCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCch-----------hhHhhcCCCCccEEEEE-
Q psy17502         32 KSDEVWIVEYY-APWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEEK-----------SLSSSHGVTGFPTVKIF-   95 (461)
Q Consensus        32 ~~~~~~lv~f~-~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~~-----------~l~~~~~i~~~P~l~~~-   95 (461)
                      .++++++|+|| ++||++|+.+.|.+   .++++.+..++.++.||+++.+           +++++|+|.++|+++++ 
T Consensus        45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d  124 (154)
T 2ju5_A           45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFID  124 (154)
T ss_dssp             HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEEC
T ss_pred             hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEc
Confidence            45789999999 99999999999999   7777666557999999998764           89999999999999999 


Q ss_pred             cCCCCCccccCCc--chhHHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGAR--TADAIIDVALEAI  121 (461)
Q Consensus        96 ~~g~~~~~y~g~~--~~~~i~~~i~~~~  121 (461)
                      .+|+.+.++ |..  +.+.+.+++.+.+
T Consensus       125 ~~G~~~~~~-G~~~~~~~~l~~~l~~~l  151 (154)
T 2ju5_A          125 AEGKQLARM-GFEPGGGAAYVSKVKSAL  151 (154)
T ss_dssp             TTCCEEEEE-CCCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEe-cCCCCCHHHHHHHHHHHH
Confidence            588777788 988  8999999998765

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.47  E-value=4.4e-13  Score=111.71  Aligned_cols=105  Identities=22%  Similarity=0.438  Sum_probs=89.4

Q ss_pred             CceeEcC-hhhhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        138 KAVVELT-DSNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       138 ~~v~~l~-~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      ..+..++ .+++.+.+.+. +++++|.||++||++|+.+.+.|.++++.+ +.+.|+.+|++.+++++++|+|.++|+++
T Consensus        12 ~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   90 (153)
T 2wz9_A           12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEGVPEVSEKYEISSVPTFL   90 (153)
T ss_dssp             CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             CCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHc-CCeEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            4577776 58888776432 789999999999999999999999999987 57999999999999999999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHhhcc
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALNKYT  248 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  248 (461)
                      +|++|    .....+.| .+.++|.+||.+...
T Consensus        91 ~~~~G----~~~~~~~G-~~~~~l~~~i~~~l~  118 (153)
T 2wz9_A           91 FFKNS----QKIDRLDG-AHAPELTKKVQRHAS  118 (153)
T ss_dssp             EEETT----EEEEEEES-SCHHHHHHHHHHHSC
T ss_pred             EEECC----EEEEEEeC-CCHHHHHHHHHHHhc
Confidence            99966    34456677 478889999988764

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.46  E-value=2.9e-13  Score=106.51  Aligned_cols=104  Identities=23%  Similarity=0.423  Sum_probs=88.0

Q ss_pred             CceeEc-Chhhhhhhhhc---CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccE
Q psy17502        138 KAVVEL-TDSNFEKLVYN---SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       138 ~~v~~l-~~~~~~~~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~  213 (461)
                      ..+..+ +.+++.+.+..   .+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++.+.+++++|++.++|+
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt   82 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccHHHHHhCCCCcccE
Confidence            346666 67888887643   47899999999999999999999999999885 79999999999999999999999999


Q ss_pred             EEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++++++|    .....+.| .+.+.|.+|+.+..
T Consensus        83 ~~~~~~G----~~~~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           83 FIFLKDG----KLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEETT----EEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             EEEEeCC----EEEEEEec-CCHHHHHHHHHHhh
Confidence            9999877    34556677 57888999987653

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.46  E-value=4.6e-13  Score=119.00  Aligned_cols=103  Identities=17%  Similarity=0.383  Sum_probs=90.0

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeC--CCChhhhhhhHHHHHHHHHhc--CceEEEEEe-----CcccHhhhhhcCc
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFA--PWCGHCKNLEPHWEKAASELE--GKVKLGAVD-----ATVHQRIAGEFNI  208 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~--~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~-----~~~~~~l~~~~~i  208 (461)
                      ..++.++..+|++.+ +.+.+++|.||+  |||+    +.|.|.++|..+.  +.+.|+.||     |+.++++|++|+|
T Consensus         5 ~~v~~Lt~~nF~~~i-~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V   79 (240)
T 2qc7_A            5 KGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL   79 (240)
T ss_dssp             TTCEECCTTHHHHHG-GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred             CCceECCHHHHHHHH-cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence            458899999999865 677899999999  9987    9999999999996  479999999     5568999999999


Q ss_pred             c--cccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        209 R--GYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       209 ~--~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      .  ++||+++|++|..  .....|.|.++.+.|.+||.++.
T Consensus        80 ~~~~~PTl~~f~~G~~--~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           80 DKESYPVFYLFRDGDF--ENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             CGGGCSEEEEEETTCS--SCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEeCCCc--CcceeecCCCCHHHHHHHHHHhc
Confidence            9  9999999998831  13678999999999999999874

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.45  E-value=5.6e-13  Score=110.23  Aligned_cols=102  Identities=10%  Similarity=0.154  Sum_probs=87.2

Q ss_pred             eEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-----------------------
Q psy17502         19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-----------------------   75 (461)
Q Consensus        19 ~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-----------------------   75 (461)
                      ..++.+.+.. ....+++++|.||++||++|+.+.|.+.++++++.+++.++.|+++                       
T Consensus        15 ~~~~g~~~~~-~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (148)
T 2b5x_A           15 AWLNGEVTRE-QLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQP   93 (148)
T ss_dssp             EEESCCCCHH-HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSC
T ss_pred             ccccCcccch-hhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcc
Confidence            4566676765 3446789999999999999999999999999999877999999954                       


Q ss_pred             ----CchhhHhhcCCCCccEEEEE-cCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         76 ----EEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        76 ----~~~~l~~~~~i~~~P~l~~~-~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                          .+.+++++|+|.++|+++++ .+|+....+.|..+.+.+.+++.+.+
T Consensus        94 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  144 (148)
T 2b5x_A           94 IFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVL  144 (148)
T ss_dssp             EEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHH
T ss_pred             eEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence                45679999999999999999 47777778899999999999998876

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.44  E-value=1e-12  Score=106.87  Aligned_cols=103  Identities=13%  Similarity=0.118  Sum_probs=85.1

Q ss_pred             CCceeEcChhhhhhhhhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        137 SKAVVELTDSNFEKLVYNS--DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      ...+..++.++|.+.+.+.  +++++|.||++||++|+.+.+.|.++++.+ ..+.|+.+|++...   ++|+|.++||+
T Consensus         9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~~~~~---~~~~i~~~Pt~   84 (135)
T 2dbc_A            9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKAIVNSCI---EHYHDNCLPTI   84 (135)
T ss_dssp             CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHC-SSEEEEEECCSSSC---SSCCSSCCSEE
T ss_pred             CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHC-CCcEEEEEEhhcCc---ccCCCCCCCEE
Confidence            3457788999999877543  368999999999999999999999999988 46999999987654   78999999999


Q ss_pred             EEEcCCCCCCcCcccccCCC-------CHHHHHHHHHhhc
Q psy17502        215 KFFSPGSRSASDAQEYNGGR-------TSQDIVTWALNKY  247 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~-------~~~~i~~fi~~~~  247 (461)
                      ++|++|    .....+.|..       +.+.|.+++.++.
T Consensus        85 ~~~~~G----~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           85 FVYKNG----QIEGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             EEESSS----SCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             EEEECC----EEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            999977    3445555643       7899999998764

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.17  E-value=7.6e-15  Score=114.09  Aligned_cols=102  Identities=36%  Similarity=0.646  Sum_probs=90.1

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      +..++.+++.+.+.+.+++++|.|+++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|++.++|+++++++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   82 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKN   82 (106)
Confidence            56788888887766778899999999999999999999999999998789999999999999999999999999999976


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      |    .....+.|..+.+++.+|+.+
T Consensus        83 g----~~~~~~~g~~~~~~l~~~l~~  104 (106)
T 2yj7_A           83 G----QVVDRLVGAQPKEALKERIDK  104 (106)
Confidence            6    355678898888999888864

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.44  E-value=1.8e-13  Score=99.63  Aligned_cols=74  Identities=16%  Similarity=0.283  Sum_probs=64.4

Q ss_pred             EEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCc-chhHHHH
Q psy17502         37 WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGAR-TADAIID  115 (461)
Q Consensus        37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~-~~~~i~~  115 (461)
                      ..|.||++||++|+.+.|.++++++++++++.++.||   +++++++|+|.++||+++  +|+....  |.. +.+++.+
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~   74 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKK   74 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHH
Confidence            3589999999999999999999999998789999998   788999999999999998  6654333  887 8888887


Q ss_pred             HH
Q psy17502        116 VA  117 (461)
Q Consensus       116 ~i  117 (461)
                      ++
T Consensus        75 ~l   76 (77)
T 1ilo_A           75 IL   76 (77)
T ss_dssp             HC
T ss_pred             Hh
Confidence            65

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.44  E-value=6.1e-13  Score=105.47  Aligned_cols=104  Identities=24%  Similarity=0.477  Sum_probs=88.9

Q ss_pred             CceeEc-Chhhhhhhhhc---CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccE
Q psy17502        138 KAVVEL-TDSNFEKLVYN---SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       138 ~~v~~l-~~~~~~~~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~  213 (461)
                      ..++.+ +.+++++.+..   .+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++.+.+++++|++.++|+
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt   84 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELKDVAEAYNVEAMPT   84 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSBSE
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCHHHHHHcCCCcCcE
Confidence            346677 57888887644   37899999999999999999999999999986 79999999999999999999999999


Q ss_pred             EEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++++++|    .....+.| .+.+.|.++|.+..
T Consensus        85 ~~~~~~g----~~~~~~~g-~~~~~l~~~l~~~~  113 (118)
T 2vm1_A           85 FLFIKDG----EKVDSVVG-GRKDDIHTKIVALM  113 (118)
T ss_dssp             EEEEETT----EEEEEEES-CCHHHHHHHHHHHH
T ss_pred             EEEEeCC----eEEEEecC-CCHHHHHHHHHHHh
Confidence            9999877    34556778 58899999998765

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.44  E-value=5e-13  Score=108.83  Aligned_cols=99  Identities=15%  Similarity=0.268  Sum_probs=82.5

Q ss_pred             eEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC----------------------
Q psy17502         19 IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE----------------------   76 (461)
Q Consensus        19 ~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~----------------------   76 (461)
                      ..++.+.+.- ....+++++|.||++||++|+...|.+.+++++++ ++.++.|+++.                      
T Consensus        10 ~~~~g~~~~l-~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   87 (136)
T 1lu4_A           10 TTLSGAPFDG-ASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDA   87 (136)
T ss_dssp             EBTTSCEEEG-GGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECT
T ss_pred             ecCCCCeecH-HHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECC
Confidence            3344444443 22256799999999999999999999999999998 79999999987                      


Q ss_pred             chhhHhhcCCCCccEEEEEc-CCCCCcccc---CCcchhHHHHHHHHH
Q psy17502         77 EKSLSSSHGVTGFPTVKIFS-DKRNPTPYQ---GARTADAIIDVALEA  120 (461)
Q Consensus        77 ~~~l~~~~~i~~~P~l~~~~-~g~~~~~y~---g~~~~~~i~~~i~~~  120 (461)
                      +.+++++|++.++|+++++. +|+.. .+.   |..+.+.+.+++.+.
T Consensus        88 ~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~l  134 (136)
T 1lu4_A           88 DGVIWARYNVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAAL  134 (136)
T ss_dssp             TSHHHHHTTCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC
T ss_pred             chhHHHhcCCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHH
Confidence            67899999999999999995 66655 888   999999999998864

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.42  E-value=1.2e-12  Score=107.11  Aligned_cols=105  Identities=16%  Similarity=0.349  Sum_probs=89.2

Q ss_pred             CCceeEc-Chhhhhhhhh---cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCccccc
Q psy17502        137 SKAVVEL-TDSNFEKLVY---NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYP  212 (461)
Q Consensus       137 ~~~v~~l-~~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P  212 (461)
                      ...+..+ +.++|.+.+.   ..+++++|.||++||++|+.+.+.+.++++.+ +.+.|+.+|++.+.+++++|+|.++|
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~v~~~~~~~~~~~~~v~~~P  101 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENY-PSLMFLVIDVDELSDFSASWEIKATP  101 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHHHHHHTTCCEES
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCcccHHHHHHcCCCccc
Confidence            3446666 5788887763   24789999999999999999999999999988 46999999999999999999999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +++++++|    .....+.|. +.++|.+++.+..
T Consensus       102 t~~~~~~G----~~~~~~~G~-~~~~l~~~l~~~~  131 (139)
T 3d22_A          102 TFFFLRDG----QQVDKLVGA-NKPELHKKITAIL  131 (139)
T ss_dssp             EEEEEETT----EEEEEEESC-CHHHHHHHHHHHH
T ss_pred             EEEEEcCC----eEEEEEeCC-CHHHHHHHHHHHh
Confidence            99999877    345567787 8899999998765

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.42  E-value=8.7e-13  Score=107.30  Aligned_cols=101  Identities=18%  Similarity=0.250  Sum_probs=83.3

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC---------------------
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE---------------------   76 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~---------------------   76 (461)
                      +..++.+.+.. ....+++++|.||++||++|+.+.|.+.+++++++ ++.++.|+++.                     
T Consensus        10 ~~~~~g~~~~l-~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   87 (136)
T 1zzo_A           10 AKTLDGHDFHG-ESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLA   87 (136)
T ss_dssp             EEBTTSCEEEG-GGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             cccCCCCEeeH-HHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEE
Confidence            33444444543 22356799999999999999999999999999998 79999999854                     


Q ss_pred             --chhhHhhcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         77 --EKSLSSSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        77 --~~~l~~~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                        +..++++|+|.++|+++++. +|+.. .+.|..+.+.+.+++.+.+
T Consensus        88 d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l  134 (136)
T 1zzo_A           88 DTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALT  134 (136)
T ss_dssp             CTTCHHHHHTTCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC
T ss_pred             cCCcHHHHHcCCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHh
Confidence              56789999999999999996 66655 8999999999999998764

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.41  E-value=6.1e-13  Score=107.93  Aligned_cols=107  Identities=18%  Similarity=0.394  Sum_probs=86.7

Q ss_pred             CCCceeEcCh-hhhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccE
Q psy17502        136 SSKAVVELTD-SNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       136 ~~~~v~~l~~-~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~  213 (461)
                      ....+..++. +++.+.+.+. +++++|.||++||++|+.+.+.|.++++.+  .+.|+.+|++.+.+++++|+|.++|+
T Consensus        18 ~~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt   95 (133)
T 3cxg_A           18 GQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPKLNDQHNIKALPT   95 (133)
T ss_dssp             TTEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchHHHHHhcCCCCCCE
Confidence            3455777765 7787766433 469999999999999999999999988876  58999999999999999999999999


Q ss_pred             EEEEc--CCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        214 IKFFS--PGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       214 i~~~~--~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +++|+  +|..  .....+.|. +.++|.++|.+..
T Consensus        96 ~~~~~~~~g~g--~~~~~~~G~-~~~~l~~~l~~~l  128 (133)
T 3cxg_A           96 FEFYFNLNNEW--VLVHTVEGA-NQNDIEKAFQKYC  128 (133)
T ss_dssp             EEEEEEETTEE--EEEEEEESC-CHHHHHHHHHHHS
T ss_pred             EEEEEecCCCe--EEEEEEcCC-CHHHHHHHHHHHH
Confidence            99996  6510  034567787 8899999998764

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.41  E-value=6.9e-13  Score=109.16  Aligned_cols=76  Identities=16%  Similarity=0.072  Sum_probs=60.2

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHHHHHH---HHcCCceEEEEEecC-CchhhHhhcCCCCccEEEEEc-CCCCCccc
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA---TALKGVVKVGAVNAD-EEKSLSSSHGVTGFPTVKIFS-DKRNPTPY  104 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a---~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~P~l~~~~-~g~~~~~y  104 (461)
                      ..++++++||.|||+||++|+.+.|.+.+..   +..+  ..|+.|+++ +..+++.++++.++||+++|+ +|+.+.+.
T Consensus        40 A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~~~  117 (151)
T 3ph9_A           40 AQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRADI  117 (151)
T ss_dssp             HHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCTTC
T ss_pred             HHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEEEE
Confidence            5567899999999999999999999987642   2222  234555554 455688999999999999998 88888888


Q ss_pred             cCC
Q psy17502        105 QGA  107 (461)
Q Consensus       105 ~g~  107 (461)
                      .|.
T Consensus       118 ~G~  120 (151)
T 3ph9_A          118 AGR  120 (151)
T ss_dssp             CCS
T ss_pred             eCC
Confidence            887

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=99.39  E-value=4.9e-14  Score=122.07  Aligned_cols=103  Identities=15%  Similarity=0.247  Sum_probs=74.4

Q ss_pred             hhHHHhhCCCCCCCccEEEEccCccccccCCCCCCHHHHHHHHHHHhcCCCCCCCcCCCCCCCcccccCCCCCCCCCCcc
Q psy17502        321 PDLENVLEIGGFGYPAMAVLNAKKMKYSLLKGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQINQVDAWDGKDGELPQE  400 (461)
Q Consensus       321 ~~~~~~lgl~~~~~P~l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP~~~~~~~~d~~~~~~p~~  400 (461)
                      ...++.+|+.  +.|+++|    +.+|.+..+.++.+++.+|+++++.  + .++++|+++|....              
T Consensus        40 ~~~a~~~gi~--gvP~fvi----ngk~~~~~~~~~~~~~~~f~~~~~~--l-~~~L~s~~~p~~~~--------------   96 (197)
T 1un2_A           40 EKAAADVQLR--GVPAMFV----NGKYQLNPQGMDTSNMDVFVQQYAD--T-VKYLSEKKGGGTGA--------------   96 (197)
T ss_dssp             HHHHHHTTCC--SSSEEEE----TTTEEECGGGSCCSSHHHHHHHHHH--H-HHHHTC----------------------
T ss_pred             HHHHHHcCCC--cCCEEEE----cceEecCccccccccHHHHHHHHHH--H-HHHHHhCccccccc--------------
Confidence            3456779998  5899976    3466554345777889999999987  5 59999999984210              


Q ss_pred             cccccCccccCCCCCCcccccchhc-cCCccEEEEEecCcchhhhhchhHH---HHHHHHHh
Q psy17502        401 EDIDLSDVDLEDLPKDEFNFDDKVI-KSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALK  458 (461)
Q Consensus       401 ~~~~~~~v~~~~~~~~~~~f~~~v~-d~~kdvlv~fyapwC~~Ck~l~p~~---~~la~~~k  458 (461)
                            ..+.      |++|..++. .+++.+||+||++||+||++++|+|   ++|++.+.
T Consensus        97 ------~~~~------g~~y~~l~~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~  146 (197)
T 1un2_A           97 ------QYED------GKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP  146 (197)
T ss_dssp             -------CCB------TTTEEECSSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC
T ss_pred             ------ccCC------CCCceEccCCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCC
Confidence                  0112      368888774 6788999999999999999999999   99988764

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.39  E-value=5.5e-13  Score=112.03  Aligned_cols=101  Identities=14%  Similarity=0.226  Sum_probs=79.2

Q ss_pred             EcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHH-H--HHHHHHcCCceEEEEEecCCchhhHhhc--------CCCC
Q psy17502         20 KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDE-Y--MKLATALKGVVKVGAVNADEEKSLSSSH--------GVTG   88 (461)
Q Consensus        20 ~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~-~--~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~   88 (461)
                      ..+++.|.. ...+++++||.||++||++|+.+.|+ |  .++++.+++.+.+++||.++.+++++.|        |+.+
T Consensus        26 ~~~~ea~~~-A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g  104 (173)
T 3ira_A           26 PWGEEAFEK-ARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGG  104 (173)
T ss_dssp             CSSHHHHHH-HHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CcCHHHHHH-HHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCC
Confidence            345677887 77889999999999999999999993 3  5777777767999999999999999998        9999


Q ss_pred             ccEEEEEc-CCCCCcc--c---cCCcchhHHHHHHHHHH
Q psy17502         89 FPTVKIFS-DKRNPTP--Y---QGARTADAIIDVALEAI  121 (461)
Q Consensus        89 ~P~l~~~~-~g~~~~~--y---~g~~~~~~i~~~i~~~~  121 (461)
                      +|+++++. +|+.+..  |   .|.....++.+++....
T Consensus       105 ~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~  143 (173)
T 3ira_A          105 WPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIK  143 (173)
T ss_dssp             SSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHH
T ss_pred             CcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHH
Confidence            99999997 6654322  2   23344556776666554

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.38  E-value=6.1e-13  Score=111.72  Aligned_cols=98  Identities=11%  Similarity=0.146  Sum_probs=75.9

Q ss_pred             eEcCccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcC---CCCccEEEE
Q psy17502         19 IKLTTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHG---VTGFPTVKI   94 (461)
Q Consensus        19 ~~l~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~---i~~~P~l~~   94 (461)
                      +.++++.+.. +.. ++++++|.|||+||++|+.+.|.++++++.+. ++.+..||.+++++++++|+   +.++||+++
T Consensus        39 ~~~~~~~~~~-l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~  116 (167)
T 1z6n_A           39 NGLPSALTER-LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLV  116 (167)
T ss_dssp             HCCCHHHHHH-HHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEE
T ss_pred             cCCCHHHHHH-HHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEE
Confidence            4566666665 332 56799999999999999999999999998875 59999999999999999997   999999999


Q ss_pred             EcCC-CCCccccCCcchhHHHHHHHHH
Q psy17502         95 FSDK-RNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        95 ~~~g-~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +++| +...++ |... ..+...+.+.
T Consensus       117 ~~~~G~~~~~~-g~~p-~~~~~~i~~~  141 (167)
T 1z6n_A          117 LDEEFNLLGRF-VERP-QAVLDGGPQA  141 (167)
T ss_dssp             ECTTCCEEEEE-ESSC-HHHHHHCHHH
T ss_pred             ECCCCCEEEEE-cCCC-HHHHHhHHHH
Confidence            9975 444444 5433 3444444443

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.37  E-value=2e-12  Score=106.42  Aligned_cols=85  Identities=18%  Similarity=0.301  Sum_probs=76.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC-CceEEEEEecCC-------------------------chhhHhhcCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK-GVVKVGAVNADE-------------------------EKSLSSSHGV   86 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~-~~v~~~~vd~~~-------------------------~~~l~~~~~i   86 (461)
                      .+++++|.||++||++|+.+.|.+.+++++++ ..+.++.|+++.                         +..++++|+|
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            67899999999999999999999999999997 469999999864                         5689999999


Q ss_pred             CCccEEEEE-cCCCCCccccCCcchhHHHHHH
Q psy17502         87 TGFPTVKIF-SDKRNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        87 ~~~P~l~~~-~~g~~~~~y~g~~~~~~i~~~i  117 (461)
                      .++|+++++ ++|+....+.|..+.+.+.+++
T Consensus       113 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          113 ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            999999999 4777778899999999998876

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.37  E-value=3e-12  Score=108.04  Aligned_cols=105  Identities=16%  Similarity=0.330  Sum_probs=87.2

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCchhhHhhc------------
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEKSLSSSH------------   84 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~------------   84 (461)
                      +..++.+.+.- -.-.+++++|.||++||++|+.+.|.+.+++++++++ +.++.|+++..++.++++            
T Consensus        19 l~~~~g~~~~l-~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~   97 (165)
T 3or5_A           19 GVTVDGKPFSS-ASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMM   97 (165)
T ss_dssp             EECTTSCEEEG-GGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEE
T ss_pred             eeCCCCCEech-hHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEe
Confidence            44455555554 2235689999999999999999999999999999875 999999999887777766            


Q ss_pred             ---------------CCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHhh
Q psy17502         85 ---------------GVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        85 ---------------~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                                     ++.++|+++++. +|+....+.|..+.+.+.++|.+.+..
T Consensus        98 ~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  152 (165)
T 3or5_A           98 ATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGA  152 (165)
T ss_dssp             CCHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC-
T ss_pred             cCHHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhh
Confidence                           899999999995 777777889999999999999988743

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.36  E-value=4e-12  Score=105.58  Aligned_cols=90  Identities=21%  Similarity=0.305  Sum_probs=78.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC------------------------chhhHhhcC--
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE------------------------EKSLSSSHG--   85 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~------------------------~~~l~~~~~--   85 (461)
                      ++++++|.||++||++|+...|.+.++++++++ .+.++.|+++.                        ...++++|+  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            568999999999999999999999999999964 59999999863                        345788899  


Q ss_pred             CCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         86 VTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        86 i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      +.++|+++++. +|+....+.|..+.+++.+++.+...
T Consensus       103 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~  140 (151)
T 3raz_A          103 VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHS  140 (151)
T ss_dssp             SCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            99999999985 78777889999999999999988763

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.36  E-value=2.8e-12  Score=102.46  Aligned_cols=102  Identities=12%  Similarity=0.175  Sum_probs=85.2

Q ss_pred             ceeEcChhhhhhhhhc-CCCeEEEEEeCC-------CChhhhhhhHHHHHHHHHhcCceEEEEEeC-------cccHhhh
Q psy17502        139 AVVELTDSNFEKLVYN-SDDIWLVEFFAP-------WCGHCKNLEPHWEKAASELEGKVKLGAVDA-------TVHQRIA  203 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~-~~~~~~v~f~~~-------~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~-------~~~~~l~  203 (461)
                      .+...+.++|.+.+.+ .+++++|.|+++       ||++|+.+.|.+.++++.+.+.+.|+.+|+       +.+..++
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~   85 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR   85 (123)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred             eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence            3556788899887755 578999999999       999999999999999999977899999999       6788899


Q ss_pred             hhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        204 GEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       204 ~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      ++|+|.++|++++|+++    .....+.| .+.+.|.+|+.+
T Consensus        86 ~~~~i~~~Pt~~~~~~~----~~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           86 KNLKVTAVPTLLKYGTP----QKLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHCCCSSSEEEETTSS----CEEEGGGG-GCHHHHHHHHHC
T ss_pred             HHCCCCeeCEEEEEcCC----ceEecccc-CCHHHHHHHHhc
Confidence            99999999999999875    23333444 567888888753

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.35  E-value=1.4e-12  Score=114.64  Aligned_cols=104  Identities=18%  Similarity=0.237  Sum_probs=87.2

Q ss_pred             CceeEc-ChhhhhhhhhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        138 KAVVEL-TDSNFEKLVYNSD--DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       138 ~~v~~l-~~~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      ..+..+ +.++|.+.+.+..  .+++|.||++||++|+.+.+.|.++|..+ +.+.|+.+|++ ++.++.+|+|.++||+
T Consensus        99 g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~-~~v~f~~vd~~-~~~l~~~~~i~~~PTl  176 (217)
T 2trc_P           99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY-PMVKFCKIRAS-NTGAGDRFSSDVLPTL  176 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTC-TTSEEEEEEHH-HHTCSTTSCGGGCSEE
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEEECC-cHHHHHHCCCCCCCEE
Confidence            457787 8899998875543  79999999999999999999999999988 47999999998 7889999999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCC-------HHHHHHHHHhhc
Q psy17502        215 KFFSPGSRSASDAQEYNGGRT-------SQDIVTWALNKY  247 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~-------~~~i~~fi~~~~  247 (461)
                      ++|++|    .....+.|..+       .+.|..|+.++.
T Consensus       177 ~~~~~G----~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g  212 (217)
T 2trc_P          177 LVYKGG----ELISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EEEETT----EEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             EEEECC----EEEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence            999977    34445556544       589999997653

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.34  E-value=3.6e-13  Score=130.14  Aligned_cols=101  Identities=23%  Similarity=0.447  Sum_probs=83.6

Q ss_pred             CCCceeEcChhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc---C-----ceEEEEEeCcccHhhhhhc
Q psy17502        136 SSKAVVELTDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE---G-----KVKLGAVDATVHQRIAGEF  206 (461)
Q Consensus       136 ~~~~v~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~---~-----~i~f~~v~~~~~~~l~~~~  206 (461)
                      ....+..++.++|++.+.. .+++++|.||++||++|+.+.|.|.++++.+.   +     .+.|+.||++.+.+++++|
T Consensus        21 ~~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y  100 (470)
T 3qcp_A           21 LDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKY  100 (470)
T ss_dssp             TCTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHT
T ss_pred             CCCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHc
Confidence            3456899999999987643 23789999999999999999999999999997   2     5999999999999999999


Q ss_pred             CcccccEEEEEcCCCCCCcCcccccCCCCHHH
Q psy17502        207 NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQD  238 (461)
Q Consensus       207 ~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~  238 (461)
                      +|.++||+++|++++.  .....|.|.++.+.
T Consensus       101 ~V~~~PTlilf~~gg~--~~~~~y~G~r~~e~  130 (470)
T 3qcp_A          101 DINFVPRLFFFYPRDS--CRSNEECGTSSLEH  130 (470)
T ss_dssp             TCCSSCEEEEEEESSC--CCTTSCCCCCCEEE
T ss_pred             CCCccCeEEEEECCCc--eEEEEeeCCCCHHH
Confidence            9999999999986532  24556777654443

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.34  E-value=2.2e-12  Score=104.19  Aligned_cols=104  Identities=17%  Similarity=0.373  Sum_probs=85.1

Q ss_pred             eEcChhhhhhhhh---cCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCc--ccHhhhhhcCccccc
Q psy17502        141 VELTDSNFEKLVY---NSDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDAT--VHQRIAGEFNIRGYP  212 (461)
Q Consensus       141 ~~l~~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~--~~~~l~~~~~i~~~P  212 (461)
                      +.++..++.+.+.   ..+++++|.||++||++|+.+.+.+   ..+++.+...+.++.+|++  .+..++++|+|.++|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~P   88 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYP   88 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSC
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCC
Confidence            4456666766542   3578999999999999999999998   7777777667899999987  477899999999999


Q ss_pred             EEEEEc-CCCCCCcCcccccCCCCHHHHHHHHHhhcc
Q psy17502        213 TIKFFS-PGSRSASDAQEYNGGRTSQDIVTWALNKYT  248 (461)
Q Consensus       213 ~i~~~~-~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  248 (461)
                      +++++. +|    .....+.|..+.++|.+||.+...
T Consensus        89 t~~~~d~~G----~~~~~~~G~~~~~~l~~~l~~~~~  121 (130)
T 2kuc_A           89 TLLFINSSG----EVVYRLVGAEDAPELLKKVKLGVE  121 (130)
T ss_dssp             EEEEECTTS----CEEEEEESCCCHHHHHHHHHHHHS
T ss_pred             EEEEECCCC----cEEEEecCCCCHHHHHHHHHHHHH
Confidence            999994 55    345578899999999999988763

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.34  E-value=3.3e-12  Score=94.70  Aligned_cols=82  Identities=26%  Similarity=0.428  Sum_probs=73.7

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCH
Q psy17502        157 DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTS  236 (461)
Q Consensus       157 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~  236 (461)
                      .+.++.|+++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|++.++|++++  +|     .. .+.|..+.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G-----~~-~~~G~~~~   74 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NG-----DV-EFIGAPTK   74 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TT-----EE-ECCSSSSS
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CC-----EE-eeecCCCH
Confidence            467899999999999999999999999998889999999999999999999999999998  54     33 78898899


Q ss_pred             HHHHHHHHhh
Q psy17502        237 QDIVTWALNK  246 (461)
Q Consensus       237 ~~i~~fi~~~  246 (461)
                      +++.+|+.+.
T Consensus        75 ~~l~~~l~~~   84 (85)
T 1fo5_A           75 EALVEAIKKR   84 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.34  E-value=1.6e-12  Score=99.43  Aligned_cols=77  Identities=14%  Similarity=0.138  Sum_probs=69.1

Q ss_pred             eEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHH
Q psy17502         36 VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID  115 (461)
Q Consensus        36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~  115 (461)
                      ..++.|+++||++|+.+.+.+++++.++.  +.+..||++++++++++|+++ +|+|++|.+|+.+  ..|..+.+.|.+
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v--~~g~~~~~~L~~  104 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL--CHYFLDSDVIGA  104 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE--ECSSCCCHHHHH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE--EecCCCHHHHHH
Confidence            57999999999999999999999998874  889999999999999999997 9999999988654  468888999988


Q ss_pred             HH
Q psy17502        116 VA  117 (461)
Q Consensus       116 ~i  117 (461)
                      |+
T Consensus       105 ~L  106 (107)
T 2fgx_A          105 YL  106 (107)
T ss_dssp             HH
T ss_pred             Hh
Confidence            86

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.33  E-value=7e-12  Score=111.66  Aligned_cols=129  Identities=13%  Similarity=0.123  Sum_probs=96.2

Q ss_pred             hhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEc-Chhhhhhhhhc--CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc
Q psy17502        110 ADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVEL-TDSNFEKLVYN--SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE  186 (461)
Q Consensus       110 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~~~~~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~  186 (461)
                      .+.+..|..+.+.+......   .......|..+ +.++|.+.+.+  .+.+++|.||++||++|+.+.|.|.++|..+.
T Consensus        87 e~fL~~~r~~Rl~el~~~~~---~~~~~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~  163 (245)
T 1a0r_P           87 ENCLRKYRRQCMQDMHQKLS---FGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP  163 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC---CCCCCCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHhh---ccCCCCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC
Confidence            33456666666655543110   01123457788 78999988754  37899999999999999999999999999986


Q ss_pred             CceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccC-------CCCHHHHHHHHHhhc
Q psy17502        187 GKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG-------GRTSQDIVTWALNKY  247 (461)
Q Consensus       187 ~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g-------~~~~~~i~~fi~~~~  247 (461)
                       .+.|+.||++. ..++.+|+|.++||+++|++|.    ....+.|       .++.+.|..|+.++.
T Consensus       164 -~v~f~kVd~d~-~~l~~~~~I~~~PTll~~~~G~----~v~~~vG~~~~~g~~~~~e~Le~~L~~~g  225 (245)
T 1a0r_P          164 -MVKFCKIKASN-TGAGDRFSSDVLPTLLVYKGGE----LLSNFISVTEQLAEEFFTGDVESFLNEYG  225 (245)
T ss_dssp             -TSEEEEEEHHH-HCCTTSSCTTTCSEEEEEETTE----EEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred             -CCEEEEEeCCc-HHHHHHCCCCCCCEEEEEECCE----EEEEEeCCcccccccccHHHHHHHHHHcC
Confidence             49999999876 6789999999999999999772    2222322       257889999998764

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.33  E-value=7.7e-12  Score=101.56  Aligned_cols=104  Identities=17%  Similarity=0.358  Sum_probs=84.0

Q ss_pred             CceeEc-Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeC----cccHhhhhhcCc
Q psy17502        138 KAVVEL-TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDA----TVHQRIAGEFNI  208 (461)
Q Consensus       138 ~~v~~l-~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~----~~~~~l~~~~~i  208 (461)
                      +++..+ +.+++...+.+ .+++++|.||++||++|+.+.+.+   .++++.+.+ +.++.+|+    +...+++++|+|
T Consensus        11 ~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~v   89 (134)
T 2fwh_A           11 LNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLNV   89 (134)
T ss_dssp             CCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTC
T ss_pred             CCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcCC
Confidence            345544 55666665533 378999999999999999999988   889988864 99999999    567889999999


Q ss_pred             ccccEEEEE-cCCCCCCcCc--ccccCCCCHHHHHHHHHhh
Q psy17502        209 RGYPTIKFF-SPGSRSASDA--QEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       209 ~~~P~i~~~-~~~~~~~~~~--~~y~g~~~~~~i~~fi~~~  246 (461)
                      .++|+++++ ++|    ...  ..+.|..+.++|.+++.+.
T Consensus        90 ~~~Pt~~~~d~~G----~~v~~~~~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           90 LGLPTILFFDGQG----QEHPQARVTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             CSSSEEEEECTTS----CBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCC----CEeeeeeeeeccCHHHHHHHHHhc
Confidence            999999999 555    233  5789999999999999764

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.33  E-value=8.4e-13  Score=106.67  Aligned_cols=105  Identities=20%  Similarity=0.478  Sum_probs=88.7

Q ss_pred             CCceeEc-Chhhhhhhhhc---CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCccccc
Q psy17502        137 SKAVVEL-TDSNFEKLVYN---SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYP  212 (461)
Q Consensus       137 ~~~v~~l-~~~~~~~~~~~---~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P  212 (461)
                      ...+..+ +.+++.+.+..   .+++++|.||++||++|+.+.+.+.++++.+. .+.|+.+|++.+.+++++|++.++|
T Consensus        13 ~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~P   91 (130)
T 1wmj_A           13 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELKEVAEKYNVEAMP   91 (130)
T ss_dssp             CSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSGGGHHHHTCCSSC
T ss_pred             CcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchHHHHHHcCCCccc
Confidence            3456677 45888877644   57899999999999999999999999999986 6999999999999999999999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +++++++|    .....+.| .+.+.|.+|+.+..
T Consensus        92 t~~~~~~g----~~~~~~~g-~~~~~l~~~l~~~~  121 (130)
T 1wmj_A           92 TFLFIKDG----AEADKVVG-ARKDDLQNTIVKHV  121 (130)
T ss_dssp             CCCBCTTT----TCCBCCCT-TCTTTHHHHHHHHT
T ss_pred             eEEEEeCC----eEEEEEeC-CCHHHHHHHHHHHH
Confidence            99999776    34556777 57788999998765

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.32  E-value=3.9e-12  Score=94.30  Aligned_cols=81  Identities=19%  Similarity=0.336  Sum_probs=72.9

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHH
Q psy17502        158 IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ  237 (461)
Q Consensus       158 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~  237 (461)
                      +.++.|+++||++|+.+.+.+.++++.+.+.+.|+.+|++.+.+++++|++.++|++++  +|     .. .+.|..+.+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G-----~~-~~~G~~~~~   74 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NG-----VV-RFVGAPSRE   74 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TT-----TE-EEECSSCCH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CC-----EE-EEccCCCHH
Confidence            46889999999999999999999999998889999999999999999999999999998  54     33 788888899


Q ss_pred             HHHHHHHhh
Q psy17502        238 DIVTWALNK  246 (461)
Q Consensus       238 ~i~~fi~~~  246 (461)
                      .+.+|+.+.
T Consensus        75 ~l~~~l~~~   83 (85)
T 1nho_A           75 ELFEAINDE   83 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999765

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.32  E-value=5.4e-12  Score=104.76  Aligned_cols=90  Identities=18%  Similarity=0.271  Sum_probs=79.5

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC----------------------chhhHhhcCCCCc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE----------------------EKSLSSSHGVTGF   89 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~----------------------~~~l~~~~~i~~~   89 (461)
                      .+++++|.||++||++|+...|.+.++++++++ .+.++.|+++.                      +..++++|+|.++
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            567999999999999999999999999999976 49999999876                      3478999999999


Q ss_pred             cEEEEEc-CCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         90 PTVKIFS-DKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        90 P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      |+++++. +|+....+.|..+.+.+.+++.+.+.
T Consensus       105 P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~  138 (151)
T 2f9s_A          105 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKP  138 (151)
T ss_dssp             CEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHh
Confidence            9999994 77777788999999999999988763

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.32  E-value=7.5e-12  Score=101.80  Aligned_cols=87  Identities=21%  Similarity=0.324  Sum_probs=76.0

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec----------------------------CCchhhHhhc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA----------------------------DEEKSLSSSH   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~----------------------------~~~~~l~~~~   84 (461)
                      .+++++|.||++||++|+...|.+.++++++++++.++.|++                            +.+..++++|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            568999999999999999999999999999777788888854                            3345799999


Q ss_pred             CCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHH
Q psy17502         85 GVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        85 ~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~  119 (461)
                      ++.++|+++++. +|+....+.|..+.+++.+++.+
T Consensus       101 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A          101 GVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred             CcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHh
Confidence            999999999994 78777889999999999988865

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.32  E-value=1.8e-12  Score=109.29  Aligned_cols=104  Identities=14%  Similarity=0.240  Sum_probs=84.1

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEe----------------------
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVN----------------------   73 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd----------------------   73 (461)
                      .+..++.+.+.. ....+++++|.||++||++|+.+.|.+.+++++++. .+.++.|+                      
T Consensus        22 ~l~~~~g~~~~~-~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~  100 (164)
T 2h30_A           22 TMKTADNRPASV-YLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNY  100 (164)
T ss_dssp             TCEETTSSBGGG-GCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             ccCCCCCCEeeH-HHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence            466777777775 445678999999999999999999999999998743 35554444                      


Q ss_pred             ------cCCchhhHhhcCCCCccEEEEE-cCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         74 ------ADEEKSLSSSHGVTGFPTVKIF-SDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        74 ------~~~~~~l~~~~~i~~~P~l~~~-~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                            ++.+.+++++|+|.++|+++++ ++|+....+.|..+.+.+.+++.+.+
T Consensus       101 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~  155 (164)
T 2h30_A          101 PKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPN  155 (164)
T ss_dssp             TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             CcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                  4445679999999999999999 47877778899999999999998764

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.32  E-value=7e-12  Score=104.17  Aligned_cols=90  Identities=14%  Similarity=0.311  Sum_probs=80.9

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCch-----------------------hhHhhcCCCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEK-----------------------SLSSSHGVTG   88 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~-----------------------~l~~~~~i~~   88 (461)
                      .+++++|.||++||++|+...|.+.++++++.+ .+.++.|+++..+                       +++++|+|.+
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            567999999999999999999999999999976 4999999998765                       7899999999


Q ss_pred             ccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         89 FPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        89 ~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      +|+++++. +|+....+.|..+.+.+.+++.+...
T Consensus       109 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~  143 (152)
T 2lja_A          109 IPRFILLDRDGKIISANMTRPSDPKTAEKFNELLG  143 (152)
T ss_dssp             SCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhc
Confidence            99999998 78777788899999999999998863

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.31  E-value=4.7e-12  Score=104.62  Aligned_cols=89  Identities=15%  Similarity=0.234  Sum_probs=77.6

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCchh-------------------------hHhhcCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEKS-------------------------LSSSHGV   86 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~~-------------------------l~~~~~i   86 (461)
                      .+++++|.||++||++|+...|.+.+++++++++ +.++.|+++..++                         ++++|+|
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i  109 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI  109 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence            5689999999999999999999999999999875 9999999997776                         9999999


Q ss_pred             CCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         87 TGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        87 ~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      .++|+++++. +|.....+.|..+.+.+.+.+.+.+
T Consensus       110 ~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A          110 YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             CSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHHh
Confidence            9999999995 7777778888877777777766543

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.30  E-value=1.6e-11  Score=102.14  Aligned_cols=92  Identities=22%  Similarity=0.324  Sum_probs=79.5

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEe-----------------------cCCchhhHhhcCCCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVN-----------------------ADEEKSLSSSHGVTG   88 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd-----------------------~~~~~~l~~~~~i~~   88 (461)
                      .+++++|.||++||++|+...|.+.+++++++++ +.++.|+                       ++.+..+++.|+|.+
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            5789999999999999999999999999999763 7777665                       345667999999999


Q ss_pred             ccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         89 FPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        89 ~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      +|+++++. +|+....|.|..+.+.+.+++.+.+...
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~  143 (153)
T 2l5o_A          107 YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNS  143 (153)
T ss_dssp             SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCC
T ss_pred             cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence            99999995 7877788999999999999999887543

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.30  E-value=3e-12  Score=94.64  Aligned_cols=73  Identities=16%  Similarity=0.160  Sum_probs=63.1

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHH
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i  117 (461)
                      ++.|+++||++|+.+.|.+++++.++     +.+||++++++++++||++ +|++++ .+|+.+.   |..+.+.|.+|+
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l   72 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWL   72 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHH
Confidence            78999999999999999998876543     6889999999999999998 999998 7776542   888999999998


Q ss_pred             HHH
Q psy17502        118 LEA  120 (461)
Q Consensus       118 ~~~  120 (461)
                      ...
T Consensus        73 ~~~   75 (87)
T 1ttz_A           73 DAA   75 (87)
T ss_dssp             HTC
T ss_pred             HHH
Confidence            754

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.29  E-value=7.4e-12  Score=101.54  Aligned_cols=88  Identities=18%  Similarity=0.350  Sum_probs=76.6

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHH--HHHHHhcCceEEEEEeC---cccHhhhhhcCc---ccccEEEEE-cCCCCCC
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWE--KAASELEGKVKLGAVDA---TVHQRIAGEFNI---RGYPTIKFF-SPGSRSA  224 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~--~~a~~~~~~i~f~~v~~---~~~~~l~~~~~i---~~~P~i~~~-~~~~~~~  224 (461)
                      ..+++++|.|+++||++|+.+.+.+.  +++..+.+.+.++.+|+   +.+.+++++|+|   .++|+++++ ++|    
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G----  102 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDG----  102 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTS----
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCC----
Confidence            45789999999999999999999999  99999877899999999   889999999999   999999999 555    


Q ss_pred             cCcccccC-------CCCHHHHHHHHHh
Q psy17502        225 SDAQEYNG-------GRTSQDIVTWALN  245 (461)
Q Consensus       225 ~~~~~y~g-------~~~~~~i~~fi~~  245 (461)
                      .....+.|       ..+.+.+.+|+.+
T Consensus       103 ~~~~~~~g~~~~~~~~~~~~~l~~~l~~  130 (133)
T 3fk8_A          103 KVRYTTKGGELANARKMSDQGIYDFFAK  130 (133)
T ss_dssp             CEEEECCSCTTTTGGGSCHHHHHHHHHH
T ss_pred             CEEEEecCCcccccccCCHHHHHHHHHH
Confidence            34455566       5788999999865

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.28  E-value=1.5e-11  Score=103.11  Aligned_cols=89  Identities=13%  Similarity=0.124  Sum_probs=77.7

Q ss_pred             CCCeEEEEEECCCCHhHHh-hHHHHHHHHHHcCCc-eEEEEEecC----------------------------Cchh---
Q psy17502         33 SDEVWIVEYYAPWCGHCQS-FKDEYMKLATALKGV-VKVGAVNAD----------------------------EEKS---   79 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~-~~~~~~~~a~~~~~~-v~~~~vd~~----------------------------~~~~---   79 (461)
                      .+++++|.||++||++|+. +.|.+.+++++++++ +.++.|+++                            ....   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            5789999999999999999 599999999999865 999999862                            2333   


Q ss_pred             ---hHhhcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         80 ---LSSSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        80 ---l~~~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                         ++++|+|.++|+++++. +|+....+.|..+.+.+.++|.+.+
T Consensus       109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  154 (160)
T 3lor_A          109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLL  154 (160)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHH
T ss_pred             hhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHH
Confidence               89999999999999996 7777788899999999999998876

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.25  E-value=1.1e-11  Score=104.94  Aligned_cols=99  Identities=15%  Similarity=0.247  Sum_probs=78.2

Q ss_pred             CccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec-----------------------CCch
Q psy17502         22 TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA-----------------------DEEK   78 (461)
Q Consensus        22 ~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~-----------------------~~~~   78 (461)
                      +.+.+....+..+++++|.||++||++|+.+.|.+.+++++   .+.++.|++                       +.+.
T Consensus        39 ~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (168)
T 2b1k_A           39 PGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDG  115 (168)
T ss_dssp             TTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTC
T ss_pred             CCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcch
Confidence            44444431345778999999999999999999999999886   477777773                       4556


Q ss_pred             hhHhhcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHhh
Q psy17502         79 SLSSSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        79 ~l~~~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      .++++|+|.++|+.+++. +|+....+.|..+.+.+.+++.+.+..
T Consensus       116 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  161 (168)
T 2b1k_A          116 MLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEK  161 (168)
T ss_dssp             HHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHH
T ss_pred             HHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            789999999999666654 777777889999999999998887643

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.25  E-value=2.4e-11  Score=100.94  Aligned_cols=90  Identities=24%  Similarity=0.407  Sum_probs=77.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCch----------------------hhHhhcCCCCc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEK----------------------SLSSSHGVTGF   89 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~----------------------~l~~~~~i~~~   89 (461)
                      .+++++|.||++||++|+...|.+.++++++.++ +.++.|+++.++                      .++++|+|.++
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            5679999999999999999999999999999875 999999988665                      68889999999


Q ss_pred             cEEEEEc-CCCCCccccCCcc--hhHHHHHHHHHHh
Q psy17502         90 PTVKIFS-DKRNPTPYQGART--ADAIIDVALEAIR  122 (461)
Q Consensus        90 P~l~~~~-~g~~~~~y~g~~~--~~~i~~~i~~~~~  122 (461)
                      |+++++. +|+....+.|...  .+.+.++|.+...
T Consensus       107 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~  142 (152)
T 3gl3_A          107 PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALG  142 (152)
T ss_dssp             SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHc
Confidence            9999985 7776777888654  4789999988753

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.25  E-value=2.8e-11  Score=101.24  Aligned_cols=90  Identities=12%  Similarity=0.110  Sum_probs=77.4

Q ss_pred             CCCeEEEEEECCCCHhHHhh-HHHHHHHHHHcCC-ceEEEEEecC----------------------------Cch----
Q psy17502         33 SDEVWIVEYYAPWCGHCQSF-KDEYMKLATALKG-VVKVGAVNAD----------------------------EEK----   78 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~-~~~~~~~a~~~~~-~v~~~~vd~~----------------------------~~~----   78 (461)
                      .+++++|.||++||++|+.. .|.+.++++++++ .+.++.|+++                            ...    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            46899999999999999996 9999999999985 5999988863                            122    


Q ss_pred             -hhHhhcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         79 -SLSSSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        79 -~l~~~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                       .+++.|+|.++|+++++. +|+....+.|..+.+.+.++|.+.+.
T Consensus       107 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  152 (158)
T 3eyt_A          107 PRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLG  152 (158)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhc
Confidence             589999999999999995 77777788999999999999988763

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.24  E-value=6.6e-10  Score=111.44  Aligned_cols=181  Identities=15%  Similarity=0.130  Sum_probs=136.6

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCC-CCccccCCcchh
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKR-NPTPYQGARTAD  111 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~-~~~~y~g~~~~~  111 (461)
                      -..++-+.++...|..|+.+..-+++++. +.+++.+-..|  ...        ...|++.+.++|+ .-.+|.|.-.-.
T Consensus        17 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~s~~i~~~~~~--~~~--------~~~p~~~~~~~~~~~~i~f~g~p~g~   85 (521)
T 1hyu_A           17 LTKPVELIATLDDSAKSAEIKELLAEIAE-LSDKVTFKEDN--TLP--------VRKPSFLITNPGSQQGPRFAGSPLGH   85 (521)
T ss_dssp             CCSCEEEEEECCSSHHHHHHHHHHHHHHT-TCTTEEEEECT--TSS--------SCSSEEEEECTTCCCSCEEESCCCGG
T ss_pred             CCCCEEEEEEeCCCcchHHHHHHHHHHHH-hCCceEEEEcC--Ccc--------cCCCEEEEecCCCcceEEEeccCcch
Confidence            34456666666779999998888888864 55677764322  110        5689999997663 447899999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEE
Q psy17502        112 AIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKL  191 (461)
Q Consensus       112 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f  191 (461)
                      ++..|+...+.-.-             .-..++++.++..........++.|+++||++|+.+.+.+++++..+. .+.+
T Consensus        86 e~~s~~~~l~~~~~-------------~~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~  151 (521)
T 1hyu_A           86 EFTSLVLALLWTGG-------------HPSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKH  151 (521)
T ss_dssp             GHHHHHHHHHHHTT-------------CCCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEE
T ss_pred             hHHHHHHHHHhhcC-------------CCCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEE
Confidence            99999987653221             123466766666533345677889999999999999999999998875 8999


Q ss_pred             EEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        192 GAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       192 ~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ..+|.+..++++++|+|.+.|++++  +|     .. ...|..+.+.|.+|+...
T Consensus       152 ~~vd~~~~~~~~~~~~i~svPt~~i--~g-----~~-~~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          152 TAIDGGTFQNEITERNVMGVPAVFV--NG-----KE-FGQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             EEEETTTCHHHHHHTTCCSSSEEEE--TT-----EE-EEESCCCHHHHHHHHCCS
T ss_pred             EEEechhhHHHHHHhCCCccCEEEE--CC-----EE-EecCCCCHHHHHHHHhhc
Confidence            9999999999999999999999977  44     22 234889999999998553

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.24  E-value=3.4e-11  Score=100.08  Aligned_cols=87  Identities=16%  Similarity=0.297  Sum_probs=73.6

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------------------------chhhHhhcCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------------------------EKSLSSSHGV   86 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------------------------~~~l~~~~~i   86 (461)
                      .+++++|.||++||++|+...|.+.+++++++++ +.++.|+++.                         ...++++|+|
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            5679999999999999999999999999999875 9999999987                         5779999999


Q ss_pred             CCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         87 TGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        87 ~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      .++|+++++. +|+....+   .+.+++.+++.+.+.
T Consensus       108 ~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~l~~  141 (152)
T 2lrn_A          108 VGFPHIILVDPEGKIVAKE---LRGDDLYNTVEKFVN  141 (152)
T ss_dssp             CSSCEEEEECTTSEEEEEC---CCTTHHHHHHHHHHT
T ss_pred             CcCCeEEEECCCCeEEEee---CCHHHHHHHHHHHHh
Confidence            9999999995 66555444   355678888877763

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.24  E-value=2.4e-11  Score=92.75  Aligned_cols=98  Identities=15%  Similarity=0.173  Sum_probs=78.8

Q ss_pred             eeEc-ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh----hhhhcCccc-ccE
Q psy17502        140 VVEL-TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR----IAGEFNIRG-YPT  213 (461)
Q Consensus       140 v~~l-~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~----l~~~~~i~~-~P~  213 (461)
                      ...| +.++|++.+ +.+++++|.|++.||++|+.+.+.|++++..  +++.|+.+|.+++++    ++.++||.. .|+
T Consensus         8 ~~~i~s~e~f~~ii-~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq   84 (112)
T 3iv4_A            8 AIKLSSIDQFEQVI-EENKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKHESPQ   84 (112)
T ss_dssp             EEECCSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSE
T ss_pred             eeecCCHHHHHHHH-hcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCccCCCe
Confidence            4556 567788765 5589999999999999999999999999984  679999999998866    799999994 899


Q ss_pred             EEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      +++|++|..   ....-.+.++.+.|.+.+
T Consensus        85 ~il~k~G~~---v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           85 AFYFVNGEM---VWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             EEEEETTEE---EEEEEGGGCSHHHHHHHT
T ss_pred             EEEEECCEE---EEEeeccccCHHHHHHhh
Confidence            999999821   222235778888776543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.23  E-value=2e-11  Score=101.84  Aligned_cols=89  Identities=20%  Similarity=0.317  Sum_probs=74.8

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-----------------------CchhhHhhcCCCCc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-----------------------EEKSLSSSHGVTGF   89 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-----------------------~~~~l~~~~~i~~~   89 (461)
                      .+++++|.||++||++|+.+.|.+.+++++  +++.++.|+++                       ....++++|+|.++
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  118 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  118 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCcc
Confidence            477999999999999999999999999876  55888888764                       34578899999999


Q ss_pred             cEEEEE-cCCCCCccccCCcchhHHHHHHHHHHhh
Q psy17502         90 PTVKIF-SDKRNPTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        90 P~l~~~-~~g~~~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      |+++++ .+|+....+.|..+.+.+.+++.+.+..
T Consensus       119 P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~  153 (156)
T 1kng_A          119 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEK  153 (156)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred             CeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            977777 4777777789999999999999887643

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.23  E-value=1.5e-11  Score=102.43  Aligned_cols=86  Identities=17%  Similarity=0.319  Sum_probs=77.4

Q ss_pred             CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec---------------------------CCchhhHhhcCCC
Q psy17502         35 EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA---------------------------DEEKSLSSSHGVT   87 (461)
Q Consensus        35 ~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~---------------------------~~~~~l~~~~~i~   87 (461)
                      ++++|.||++||++|+...|.+.++++++  .+.++.|++                           +....++++|+|.
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL  108 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence            89999999999999999999999999999  588888998                           3667899999999


Q ss_pred             CccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         88 GFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        88 ~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      ++|+++++. +|+....+.|..+.+++.++|.+...
T Consensus       109 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~  144 (154)
T 3ia1_A          109 GQPWTFVVDREGKVVALFAGRAGREALLDALLLAGA  144 (154)
T ss_dssp             SSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTC
T ss_pred             cccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccC
Confidence            999988885 77777889999999999999988753

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.23  E-value=2.2e-11  Score=100.56  Aligned_cols=86  Identities=14%  Similarity=0.255  Sum_probs=72.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHc-CCc-eEEEEEecCC-------------------------chhhHhhcC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATAL-KGV-VKVGAVNADE-------------------------EKSLSSSHG   85 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~-~~~-v~~~~vd~~~-------------------------~~~l~~~~~   85 (461)
                      .+++++|.||++||++|+...|.+.++++++ .++ +.++.|+++.                         +..++++|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            5689999999999999999999999999999 664 9999999886                         447899999


Q ss_pred             CCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         86 VTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        86 i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |.++|+++++. +|+....+.   +.+.+.+++.+.+
T Consensus       112 v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll  145 (148)
T 3fkf_A          112 ILTLPTNILLSPTGKILARDI---QGEALTGKLKELL  145 (148)
T ss_dssp             CCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC
T ss_pred             CCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHH
Confidence            99999999995 665444443   7778888887654

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.22  E-value=3.9e-11  Score=103.09  Aligned_cols=90  Identities=20%  Similarity=0.441  Sum_probs=76.3

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-e------EEEEEecCC-chhhHhhc--------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-V------KVGAVNADE-EKSLSSSH--------------------   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v------~~~~vd~~~-~~~l~~~~--------------------   84 (461)
                      .+++++|.||++||++|+...|.+.+++++++++ +      .++.|+++. .++.+++|                    
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            5689999999999999999999999999998764 7      999999988 66666655                    


Q ss_pred             -----CCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         85 -----GVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        85 -----~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                           ++.++|+++++. +|+....+.|..+.+++.+++.+.+.
T Consensus       138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             HhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                 689999877775 77777788999999999999988763

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.19  E-value=1.3e-10  Score=95.52  Aligned_cols=100  Identities=10%  Similarity=0.138  Sum_probs=80.1

Q ss_pred             cchhHHH---hcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCC--chhhHhhcCCCCccEEEEE
Q psy17502         24 SNFDDKV---IKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADE--EKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        24 ~~f~~~~---~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~~   95 (461)
                      .+|++.+   .++++++||.||++||..|+.+....   .++++.++..+.+.++|.+.  ...+.++|++.++|+++++
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fl  108 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSIL  108 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEE
Confidence            4565522   34688999999999999999997765   66666665578999999865  3568999999999999999


Q ss_pred             c-C-CCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         96 S-D-KRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        96 ~-~-g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      . + |+.+..+.| .+++++.+++.+.+...
T Consensus       109 d~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~  138 (153)
T 2dlx_A          109 DPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEH  138 (153)
T ss_dssp             CTTTCCCCEEESS-CCHHHHHHHHHHHHHHT
T ss_pred             eCCCCcEeeecCC-CCHHHHHHHHHHHHHhc
Confidence            7 4 556666766 89999999999887655

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.19  E-value=8.4e-11  Score=97.78  Aligned_cols=89  Identities=25%  Similarity=0.419  Sum_probs=75.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc-----------------------hhhHhhcCCCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE-----------------------KSLSSSHGVTG   88 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~-----------------------~~l~~~~~i~~   88 (461)
                      .+++++|.||++||++|+...|.+.++++++.+ .+.++.|+++.+                       ..++++|++.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            568999999999999999999999999999987 589999998875                       34889999999


Q ss_pred             ccEEEEEc-CCCCCccccCCc--chhHHHHHHHHHH
Q psy17502         89 FPTVKIFS-DKRNPTPYQGAR--TADAIIDVALEAI  121 (461)
Q Consensus        89 ~P~l~~~~-~g~~~~~y~g~~--~~~~i~~~i~~~~  121 (461)
                      +|+++++. +|+....+.|..  +.+++.++|.+..
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~  142 (154)
T 3kcm_A          107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNEL  142 (154)
T ss_dssp             BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-
T ss_pred             CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHH
Confidence            99877775 777677788875  6668888887654

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.19  E-value=8.3e-11  Score=98.37  Aligned_cols=87  Identities=18%  Similarity=0.340  Sum_probs=73.3

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC-CceEEEEEecCC-------------------chhhHhhcCCCCccEE
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK-GVVKVGAVNADE-------------------EKSLSSSHGVTGFPTV   92 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~-~~v~~~~vd~~~-------------------~~~l~~~~~i~~~P~l   92 (461)
                      .+++++|.||++||++|+...|.+.++++++. ..+.++.|+++.                   +..++++|+|.++|++
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~  119 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT  119 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence            56799999999999999999999999999997 469999999987                   6789999999999998


Q ss_pred             EEEc-CCCCCccccCCcc--hhHHHHHHHH
Q psy17502         93 KIFS-DKRNPTPYQGART--ADAIIDVALE  119 (461)
Q Consensus        93 ~~~~-~g~~~~~y~g~~~--~~~i~~~i~~  119 (461)
                      +++. +|.....+.|..+  ..++++.+.+
T Consensus       120 ~lid~~G~i~~~~~G~~~~~~~~~~~~~~~  149 (158)
T 3hdc_A          120 FIVDRKGIIRQRVTGGIEWDAPKVVSYLKS  149 (158)
T ss_dssp             EEECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred             EEEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence            8885 7777777888644  4556665554

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.18  E-value=1.2e-10  Score=98.16  Aligned_cols=86  Identities=19%  Similarity=0.286  Sum_probs=73.4

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC------------------Cc-----------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD------------------EE-----------------   77 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~------------------~~-----------------   77 (461)
                      .+++++|.||++||++|+...|.+.+++++++ ++.++.|+++                  +.                 
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI  114 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence            56899999999999999999999999999998 7999999988                  44                 


Q ss_pred             -----hhhHhhcCCCCccEEEEEc-CCCCCccccCCc-chhHHHHHHHHHH
Q psy17502         78 -----KSLSSSHGVTGFPTVKIFS-DKRNPTPYQGAR-TADAIIDVALEAI  121 (461)
Q Consensus        78 -----~~l~~~~~i~~~P~l~~~~-~g~~~~~y~g~~-~~~~i~~~i~~~~  121 (461)
                           ..++++|+|.++|+++++. +|+ +.. .|.. +.+.+.+.+.+.+
T Consensus       115 ~~~d~~~~~~~~~v~~~P~~~lid~~G~-i~~-~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          115 MVMDDGSLVEKFNVRSIDYIVIMDKSSN-VLY-AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             EEECCSHHHHHTTCCSSSEEEEEETTCC-EEE-EEESCCHHHHHHHHHHC-
T ss_pred             EEeChHHHHHHhCCCCceEEEEEcCCCc-EEE-eCCCCCHHHHHHHHHHHh
Confidence                 2789999999999999996 554 433 8888 8889988887643

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.17  E-value=8.9e-11  Score=97.51  Aligned_cols=83  Identities=12%  Similarity=0.157  Sum_probs=71.4

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCchh-----------------------hHhhcCCCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEKS-----------------------LSSSHGVTG   88 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~~-----------------------l~~~~~i~~   88 (461)
                      .+++++|.||++||++|+...|.+.+++++++++ +.++.|+++...+                       ++++|++.+
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  113 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN  113 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence            4579999999999999999999999999999775 9999999987654                       889999999


Q ss_pred             ccEEEEEc-CCCCCccccCCcchhHHHH
Q psy17502         89 FPTVKIFS-DKRNPTPYQGARTADAIID  115 (461)
Q Consensus        89 ~P~l~~~~-~g~~~~~y~g~~~~~~i~~  115 (461)
                      +|+++++. +|+....+.|..+.++...
T Consensus       114 ~P~~~lid~~G~i~~~~~g~~~~e~~~~  141 (152)
T 2lrt_A          114 LPSVFLVNRNNELSARGENIKDLDEAIK  141 (152)
T ss_dssp             CSEEEEEETTTEEEEETTTCSCHHHHHH
T ss_pred             CceEEEECCCCeEEEecCCHHHHHHHHH
Confidence            99999995 7877778888877665544

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.16  E-value=1.1e-10  Score=95.85  Aligned_cols=83  Identities=17%  Similarity=0.235  Sum_probs=66.4

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC--CceEEEEEecCCc------------------
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADEE------------------   77 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~--~~v~~~~vd~~~~------------------   77 (461)
                      +..++.+.+.- ---.+++++|.||++||++|+.+.|.+.+++++++  ..+.++.|+++..                  
T Consensus        13 l~~~~g~~~~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~   91 (144)
T 1i5g_A           13 VLKGAAADIAL-PSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF   91 (144)
T ss_dssp             EEETTEEEEEG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             EEcCCCCEecH-HHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCcccccc
Confidence            44555554443 22256799999999999999999999999999998  3699999998863                  


Q ss_pred             ------hhhHhhcCCCCccEEEEEc--CCCCC
Q psy17502         78 ------KSLSSSHGVTGFPTVKIFS--DKRNP  101 (461)
Q Consensus        78 ------~~l~~~~~i~~~P~l~~~~--~g~~~  101 (461)
                            ..++++|+|.++|+++++.  +|+..
T Consensus        92 ~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~  123 (144)
T 1i5g_A           92 EDRKGMEFLTTGFDVKSIPTLVGVEADSGNII  123 (144)
T ss_dssp             TCHHHHHHHHHHTTCCSSSEEEEEETTTCCEE
T ss_pred             CchHHHHHHHHHcCCCCCCEEEEEECCCCcEE
Confidence                  4689999999999999996  66433

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.15  E-value=2e-11  Score=110.87  Aligned_cols=81  Identities=23%  Similarity=0.391  Sum_probs=64.5

Q ss_pred             chhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC------CchhhHhhcCCCCccEEEEEcCC
Q psy17502         25 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD------EEKSLSSSHGVTGFPTVKIFSDK   98 (461)
Q Consensus        25 ~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~------~~~~l~~~~~i~~~P~l~~~~~g   98 (461)
                      .+.+ .+++..  +|+||||||+||+++.|.|++++++++      .|||+      +++++|++++|+++||+++  +|
T Consensus       191 ~la~-~l~~~~--vV~F~A~WC~~Ck~l~p~le~lA~~l~------~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G  259 (291)
T 3kp9_A          191 GLAA-HLRQIG--GTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NG  259 (291)
T ss_dssp             HHHH-HHHHTT--CEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TT
T ss_pred             HHHH-HhCCCC--EEEEECCCCHHHHHHHHHHHHHHHHcC------EEEEeecCchhhHHHHHHHcCCcccCeEEE--CC
Confidence            3444 343443  799999999999999999999987663      45555      2789999999999999665  66


Q ss_pred             CCCccccCCcchhHHHHHHHH
Q psy17502         99 RNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        99 ~~~~~y~g~~~~~~i~~~i~~  119 (461)
                      +   +|.|.++.+++.+|+..
T Consensus       260 ~---~~~G~~~~~~L~~~l~~  277 (291)
T 3kp9_A          260 R---TYTGVRSLEALAVASGY  277 (291)
T ss_dssp             E---EEESCCCHHHHHHHTCC
T ss_pred             E---EecCCCCHHHHHHHHCC
Confidence            4   49999999999998854

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.14  E-value=8.1e-11  Score=97.00  Aligned_cols=69  Identities=19%  Similarity=0.308  Sum_probs=60.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC--CceEEEEEecCCc------------------------hhhHhhcCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADEE------------------------KSLSSSHGV   86 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~--~~v~~~~vd~~~~------------------------~~l~~~~~i   86 (461)
                      .+++++|+||++||++|+.+.|.+.+++++++  +++.++.|+++..                        ..++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            56799999999999999999999999999997  3688999988763                        468999999


Q ss_pred             CCccEEEEEc--CCCCC
Q psy17502         87 TGFPTVKIFS--DKRNP  101 (461)
Q Consensus        87 ~~~P~l~~~~--~g~~~  101 (461)
                      .++|+++++.  +|+..
T Consensus       107 ~~~Pt~~lid~~~G~i~  123 (146)
T 1o8x_A          107 ESIPTLIGVDADSGDVV  123 (146)
T ss_dssp             CSSSEEEEEETTTCCEE
T ss_pred             CCCCEEEEEECCCCeEE
Confidence            9999999997  66443

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.14  E-value=1.2e-10  Score=95.55  Aligned_cols=83  Identities=16%  Similarity=0.172  Sum_probs=66.1

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHH---HHHHcCC-ceEEEEEecCCchh------------------------hHhhc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMK---LATALKG-VVKVGAVNADEEKS------------------------LSSSH   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~---~a~~~~~-~v~~~~vd~~~~~~------------------------l~~~~   84 (461)
                      .+++++|.||++||++|+...|.+.+   +++++++ .+.++.|+.+...+                        +++.|
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  109 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY  109 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence            45899999999999999999999999   9998864 59999999887643                        47889


Q ss_pred             CCCCccEEEEEc-CCCCCccccCCcchhHHHHHHH
Q psy17502         85 GVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVAL  118 (461)
Q Consensus        85 ~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~  118 (461)
                      +|.++|+++++. +|....+..   +.+++.+++.
T Consensus       110 ~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~  141 (142)
T 3eur_A          110 DLRAIPTLYLLDKNKTVLLKDA---TLQKVEQYLA  141 (142)
T ss_dssp             CCTTCSEEEEECTTCBEEEEEE---CHHHHHHHHH
T ss_pred             CCCcCCeEEEECCCCcEEecCC---CHHHHHHHHh
Confidence            999999999997 554433332   4567777664

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.12  E-value=1.3e-10  Score=95.15  Aligned_cols=85  Identities=18%  Similarity=0.384  Sum_probs=68.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHH---HHHHcCC-ceEEEEEecCCchhh------------------------Hhhc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMK---LATALKG-VVKVGAVNADEEKSL------------------------SSSH   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~---~a~~~~~-~v~~~~vd~~~~~~l------------------------~~~~   84 (461)
                      .+++++|.||++||++|+...|.+.+   +++++++ .+.++.|+++..++.                        ++.|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            56899999999999999999999988   8888864 499999998866543                        4489


Q ss_pred             CCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHH
Q psy17502         85 GVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        85 ~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +|.++|+++++. +|+..  + +..+.+++.+++.+.
T Consensus       106 ~v~~~P~~~lid~~G~i~--~-~~~~~~~l~~~l~~~  139 (142)
T 3ewl_A          106 DIRATPTIYLLDGRKRVI--L-KDTSMEQLIDYLATQ  139 (142)
T ss_dssp             CCCSSSEEEEECTTCBEE--E-CSCCHHHHHHHHHC-
T ss_pred             CCCCCCeEEEECCCCCEE--e-cCCCHHHHHHHHHHH
Confidence            999999999996 55332  2 567888888888765

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.12  E-value=1.9e-10  Score=98.01  Aligned_cols=89  Identities=19%  Similarity=0.278  Sum_probs=75.1

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec-----------------------CCchhhHhhcCCCCc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA-----------------------DEEKSLSSSHGVTGF   89 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i~~~   89 (461)
                      .+++++|.||++||++|+...|.+.+++++   .+.++.|++                       +.+..+++.|+|.++
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  133 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGA  133 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCC
Confidence            467999999999999999999999999987   477777775                       334568899999999


Q ss_pred             cEEEEEc-CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         90 PTVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        90 P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      |+++++. +|.....+.|..+.+.+.+++.+.+...
T Consensus       134 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l  169 (176)
T 3kh7_A          134 PETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQL  169 (176)
T ss_dssp             CEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHH
T ss_pred             CeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            9888885 7777778899999999999998887544

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.12  E-value=1.3e-10  Score=98.65  Aligned_cols=102  Identities=9%  Similarity=0.118  Sum_probs=75.8

Q ss_pred             cChhhhhhhh---hcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCcccHhh--------------
Q psy17502        143 LTDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDATVHQRI--------------  202 (461)
Q Consensus       143 l~~~~~~~~~---~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~~~~~l--------------  202 (461)
                      .+..++++.+   ...+++++|.|+++||++|+.+.+.+   .++.+.+++.+.++.+|++...++              
T Consensus        31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~  110 (172)
T 3f9u_A           31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERT  110 (172)
T ss_dssp             CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEE
T ss_pred             cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhh
Confidence            3444454443   25678999999999999999974443   555555555799999998766544              


Q ss_pred             ------------hhhcCcccccEEEEEcCCCCCCcCcccccCCCC-HHHHHHHHHhhc
Q psy17502        203 ------------AGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT-SQDIVTWALNKY  247 (461)
Q Consensus       203 ------------~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~-~~~i~~fi~~~~  247 (461)
                                  +++|++.++|+++++...+   .....+.|..+ .+.+.+|+.+..
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G---~~~~~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          111 LRTVGDKWSYLQRVKFGANAQPFYVLIDNEG---NPLNKSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             EEEHHHHHHHHHHHHHSCCCSSEEEEECTTS---CBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHcCCCCcceEEEECCCC---CEEeeccCCCCCHHHHHHHHHHHH
Confidence                        6889999999999995432   35556779887 999999987643

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.11  E-value=2.3e-10  Score=99.38  Aligned_cols=92  Identities=18%  Similarity=0.252  Sum_probs=76.6

Q ss_pred             hcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecC-----------------------------Cchhh
Q psy17502         31 IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNAD-----------------------------EEKSL   80 (461)
Q Consensus        31 ~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~-----------------------------~~~~l   80 (461)
                      ++.+.+++|.||++||++|+...|.+.++++++.++ +.++.|+++                             .+..+
T Consensus        43 ~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (196)
T 2ywi_A           43 VKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEV  122 (196)
T ss_dssp             HCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHH
T ss_pred             hCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHH
Confidence            344446999999999999999999999999999764 999999984                             34578


Q ss_pred             HhhcCCCCccEEEEEc-CCCCCcc---------ccCCcchhHHHHHHHHHHh
Q psy17502         81 SSSHGVTGFPTVKIFS-DKRNPTP---------YQGARTADAIIDVALEAIR  122 (461)
Q Consensus        81 ~~~~~i~~~P~l~~~~-~g~~~~~---------y~g~~~~~~i~~~i~~~~~  122 (461)
                      +++|+|.++|+++++. +|+....         +.|..+.+++.+.|.+.+.
T Consensus       123 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~  174 (196)
T 2ywi_A          123 AKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLE  174 (196)
T ss_dssp             HHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHc
Confidence            9999999999999995 6655544         4677889999999988764

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.11  E-value=2.1e-10  Score=94.13  Aligned_cols=68  Identities=19%  Similarity=0.363  Sum_probs=59.4

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC--CceEEEEEecCCc------------------------hhhHhhcCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK--GVVKVGAVNADEE------------------------KSLSSSHGV   86 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~--~~v~~~~vd~~~~------------------------~~l~~~~~i   86 (461)
                      .+++++|.||++||++|+.+.|.+.+++++++  ..+.++.|+++..                        ..++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            46799999999999999999999999999997  4688888988763                        468999999


Q ss_pred             CCccEEEEEc--CCCC
Q psy17502         87 TGFPTVKIFS--DKRN  100 (461)
Q Consensus        87 ~~~P~l~~~~--~g~~  100 (461)
                      .++|+++++.  +|+.
T Consensus       107 ~~~Pt~~lid~~~G~i  122 (144)
T 1o73_A          107 ESIPTLITINADTGAI  122 (144)
T ss_dssp             CSSSEEEEEETTTCCE
T ss_pred             CCCCEEEEEECCCCeE
Confidence            9999999998  5543

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.11  E-value=4e-10  Score=93.24  Aligned_cols=86  Identities=10%  Similarity=0.234  Sum_probs=72.1

Q ss_pred             CCCeEEEEEECCCCHh--HHhhHHHHHHHHHHc-CCc-eEEEEEecCCch-------------------------hhHhh
Q psy17502         33 SDEVWIVEYYAPWCGH--CQSFKDEYMKLATAL-KGV-VKVGAVNADEEK-------------------------SLSSS   83 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~--C~~~~~~~~~~a~~~-~~~-v~~~~vd~~~~~-------------------------~l~~~   83 (461)
                      .+++++|.||++||++  |+...|.+.++++++ +++ +.++.|+++..+                         .+++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            4679999999999999  999999999999999 664 999999988664                         68999


Q ss_pred             cCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         84 HGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        84 ~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |+|.++|+++++. +|+....+.   +.+.+.+.+.+.+
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll  147 (150)
T 3fw2_A          112 YSIYKIPANILLSSDGKILAKNL---RGEELKKKIENIV  147 (150)
T ss_dssp             TTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHH
T ss_pred             cCCCccCeEEEECCCCEEEEccC---CHHHHHHHHHHHH
Confidence            9999999999995 665444443   6777888777665

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.10  E-value=2.6e-10  Score=96.05  Aligned_cols=69  Identities=20%  Similarity=0.376  Sum_probs=60.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC--ceEEEEEecCCc------------------------hhhHhhcCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG--VVKVGAVNADEE------------------------KSLSSSHGV   86 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~--~v~~~~vd~~~~------------------------~~l~~~~~i   86 (461)
                      .+++++|.||++||++|+...|.+.++++++++  .+.++.|+++..                        ..++++|+|
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            568999999999999999999999999999975  688888888776                        678999999


Q ss_pred             CCccEEEEEc-C-CCCC
Q psy17502         87 TGFPTVKIFS-D-KRNP  101 (461)
Q Consensus        87 ~~~P~l~~~~-~-g~~~  101 (461)
                      .++|+++++. + |+.+
T Consensus       127 ~~~Pt~~lid~~~G~iv  143 (165)
T 3s9f_A          127 ESIPTLIGLNADTGDTV  143 (165)
T ss_dssp             CSSSEEEEEETTTCCEE
T ss_pred             CCCCEEEEEeCCCCEEE
Confidence            9999999998 3 5433

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.70  E-value=7.8e-12  Score=100.95  Aligned_cols=91  Identities=18%  Similarity=0.311  Sum_probs=76.9

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCc--ccHhhhhhcCcccccEEEEEc--CCCCCCc
Q psy17502        153 YNSDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDAT--VHQRIAGEFNIRGYPTIKFFS--PGSRSAS  225 (461)
Q Consensus       153 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~--~~~~l~~~~~i~~~P~i~~~~--~~~~~~~  225 (461)
                      ...+++++|.||++||++|+.+.+.+   .++++.+.+.+.++.+|++  ....++++|+|.++|+++++.  +|    .
T Consensus        16 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G----~   91 (130)
T 2lst_A           16 QAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAG----A   91 (130)
Confidence            35678999999999999999999999   8898888777999999884  567899999999999999994  34    2


Q ss_pred             C--cccccCCCCHHHHHHHHHhhc
Q psy17502        226 D--AQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       226 ~--~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      .  ...+.|..+.+.|.++|.+..
T Consensus        92 ~~~~~~~~G~~~~~~l~~~l~~~~  115 (130)
T 2lst_A           92 WEEVGRLFGSRPRAEFLKELRQVC  115 (130)
Confidence            3  456889888899999987655

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.10  E-value=7.1e-11  Score=91.22  Aligned_cols=75  Identities=23%  Similarity=0.371  Sum_probs=62.6

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc------ccHhhhhhcCcccccEEEEEcCCCCCCcCccc
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT------VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE  229 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~------~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~  229 (461)
                      +++.+|.||++||++|+.+.|.|.++++.+.      .++++      .+.+++++|+|.++||+++  +|     .  .
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G-----~--~   76 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NG-----R--T   76 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TT-----E--E
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEeCEEEE--CC-----E--E
Confidence            3556899999999999999999999997664      45665      5778999999999999877  44     2  3


Q ss_pred             ccCCCCHHHHHHHHHh
Q psy17502        230 YNGGRTSQDIVTWALN  245 (461)
Q Consensus       230 y~g~~~~~~i~~fi~~  245 (461)
                      |.|..+.++|.+|+..
T Consensus        77 ~~G~~~~~~l~~~~~~   92 (106)
T 3kp8_A           77 YTGVRSLEALAVASGY   92 (106)
T ss_dssp             EESCCCHHHHHHHHTC
T ss_pred             ecCCCCHHHHHHHhCC
Confidence            8999999999999854

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.10  E-value=1.2e-10  Score=90.30  Aligned_cols=86  Identities=9%  Similarity=0.079  Sum_probs=67.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-----ceEEEEEeCccc--HhhhhhcCcccccEEEEEcCCCCCCcCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-----KVKLGAVDATVH--QRIAGEFNIRGYPTIKFFSPGSRSASDA  227 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-----~i~f~~v~~~~~--~~l~~~~~i~~~P~i~~~~~~~~~~~~~  227 (461)
                      +...++|.||++||++|+.+.+...   ..+..     .+.+..+|.+.+  ..++.+++|.+.||+++|++|    .+.
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~---~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G----~ev   89 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIA---PQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGD----VES   89 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTT---TTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETT----EEE
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHH---hhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECC----EEE
Confidence            3467999999999999999875332   22222     267788888765  578899999999999999977    467


Q ss_pred             ccccCCCCHHHHHHHHHhhc
Q psy17502        228 QEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       228 ~~y~g~~~~~~i~~fi~~~~  247 (461)
                      .+..|....+.+..|+....
T Consensus        90 ~Ri~G~~~~~~f~~~L~~~l  109 (116)
T 3dml_A           90 GRLEGYPGEDFFWPMLARLI  109 (116)
T ss_dssp             EEEECCCCHHHHHHHHHHHH
T ss_pred             eeecCCCCHHHHHHHHHHHH
Confidence            78899999999999997653

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.09  E-value=2.9e-10  Score=82.32  Aligned_cols=74  Identities=16%  Similarity=0.301  Sum_probs=62.9

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCC-CHH
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR-TSQ  237 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~-~~~  237 (461)
                      ..|.||++||++|+.+.+.+.++++.+.+.+.++.+|   +.+++++|+|.++|++++  +|     ..... |.. +.+
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G-----~~~~~-G~~~~~~   70 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DG-----ELKIM-GRVASKE   70 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TT-----EEEEC-SSCCCHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CC-----EEEEc-CCCCCHH
Confidence            3588999999999999999999999998789999987   678999999999999998  54     32222 887 899


Q ss_pred             HHHHHH
Q psy17502        238 DIVTWA  243 (461)
Q Consensus       238 ~i~~fi  243 (461)
                      +|.+|+
T Consensus        71 ~l~~~l   76 (77)
T 1ilo_A           71 EIKKIL   76 (77)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            988875

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.09  E-value=3.2e-10  Score=106.83  Aligned_cols=92  Identities=13%  Similarity=0.130  Sum_probs=80.4

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC---------------------------chhhHhhc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE---------------------------EKSLSSSH   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~---------------------------~~~l~~~~   84 (461)
                      .++++||.||++||++|+...|.+.++++++++ .+.++.|+++.                           +..++++|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            468999999999999999999999999999976 49999998752                           35689999


Q ss_pred             CCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         85 GVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        85 ~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      +|.++|+++++. +|+....+.|..+.+.+.++|.+.+...
T Consensus       161 gV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~e~  201 (352)
T 2hyx_A          161 RNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLNDA  201 (352)
T ss_dssp             TCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHHHH
T ss_pred             CCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHhhc
Confidence            999999999985 7777788899999999999999887554

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.08  E-value=6e-10  Score=96.01  Aligned_cols=90  Identities=16%  Similarity=0.201  Sum_probs=73.6

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-----------------------------CchhhHhh
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-----------------------------EEKSLSSS   83 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-----------------------------~~~~l~~~   83 (461)
                      .+++++|.||++||++|+...|.+.++++++.+++.++.|+++                             .+.+++++
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            4589999999999999999999999999999877999999983                             34578999


Q ss_pred             cCCCCccEEEEEc-CCCCCcc--------ccCCcchhHHHHHHHHHHh
Q psy17502         84 HGVTGFPTVKIFS-DKRNPTP--------YQGARTADAIIDVALEAIR  122 (461)
Q Consensus        84 ~~i~~~P~l~~~~-~g~~~~~--------y~g~~~~~~i~~~i~~~~~  122 (461)
                      |++.++|+++++. +|.....        +.|..+.+++.+.|.+.+.
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~  159 (188)
T 2cvb_A          112 YRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLR  159 (188)
T ss_dssp             TTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHT
T ss_pred             cCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHc
Confidence            9999999999996 5543333        2233478899999988764

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.05  E-value=9.6e-10  Score=94.53  Aligned_cols=90  Identities=20%  Similarity=0.348  Sum_probs=75.1

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC-CceEEEEEecCCc-----hhhHhhcCCC-------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALK-GVVKVGAVNADEE-----KSLSSSHGVT-------------------   87 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~-~~v~~~~vd~~~~-----~~l~~~~~i~-------------------   87 (461)
                      .+++++|.||++||++|+...|.+.+++++++ ..+.++.|+++..     .++++++++.                   
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            56799999999999999999999999999997 4689999998765     4567777774                   


Q ss_pred             ----CccEEEEEc-CCCCCccccCCcc--hhHHHHHHHHHHh
Q psy17502         88 ----GFPTVKIFS-DKRNPTPYQGART--ADAIIDVALEAIR  122 (461)
Q Consensus        88 ----~~P~l~~~~-~g~~~~~y~g~~~--~~~i~~~i~~~~~  122 (461)
                          ++|+++++. +|+....+.|..+  .+++.+++...+.
T Consensus       139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  180 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG  180 (186)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhc
Confidence                899999995 7766677888765  7889999988763

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=99.05  E-value=1.4e-09  Score=86.11  Aligned_cols=101  Identities=12%  Similarity=0.170  Sum_probs=81.5

Q ss_pred             CCCCceeEc-ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccE
Q psy17502        135 GSSKAVVEL-TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       135 ~~~~~v~~l-~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~  213 (461)
                      +++..+..| +.+++++++ +.+++++|+||++||+.|   .+.|.++|+.+ +.+.|+.+   .+.++++++++. .|+
T Consensus        18 gP~~~~~~i~s~~e~e~fi-~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t---~~~~v~~~~~v~-~~~   88 (124)
T 2l4c_A           18 GAAQEPTWLTDVPAAMEFI-AATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGIS---TDSEVLTHYNIT-GNT   88 (124)
T ss_dssp             CCSCCCEECCSHHHHHHHH-HTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEE---CCHHHHHHTTCC-SSC
T ss_pred             CCCCcceEcCCHHHHHHHH-hcCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEE---ChHHHHHHcCCC-CCe
Confidence            334445556 456777765 678899999999997665   88999999999 88999987   457799999998 699


Q ss_pred             EEEEcCCCCCCcCcccccC----CCCHHHHHHHHHhhc
Q psy17502        214 IKFFSPGSRSASDAQEYNG----GRTSQDIVTWALNKY  247 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g----~~~~~~i~~fi~~~~  247 (461)
                      +++|+++.   +....|+|    +.+.++|.+||..+.
T Consensus        89 vvlfkkfd---e~~~~~~g~~~~~~~~~~L~~FI~~n~  123 (124)
T 2l4c_A           89 ICLFRLVD---NEQLNLEDEDIESIDATKLSRFIEINS  123 (124)
T ss_dssp             EEEEETTT---TEEEEECHHHHTTCCHHHHHHHHHHHC
T ss_pred             EEEEEcCC---CCceeecCcccCCCCHHHHHHHHHHhc
Confidence            99999873   24667886    789999999998764

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.04  E-value=8.2e-11  Score=92.81  Aligned_cols=87  Identities=16%  Similarity=0.308  Sum_probs=64.3

Q ss_pred             chhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-----hhhHhhcCCCCccEEEEEcCCC
Q psy17502         25 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-----KSLSSSHGVTGFPTVKIFSDKR   99 (461)
Q Consensus        25 ~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~P~l~~~~~g~   99 (461)
                      .+.+ +++.+ .+++ ||++||++|+.+.|.+.+++..    +.++.||.+.+     .++++++++.++|++  |.+|+
T Consensus        12 ~~~~-~~~~~-~vv~-f~a~~C~~C~~~~~~l~~~~~~----~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~   82 (116)
T 2e7p_A           12 KAKE-LASSA-PVVV-FSKTYCGYCNRVKQLLTQVGAS----YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGK   82 (116)
T ss_dssp             HHHH-HHTSS-SEEE-EECTTCHHHHHHHHHHHHHTCC----CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTE
T ss_pred             HHHH-HHcCC-CEEE-EECCCChhHHHHHHHHHHcCCC----eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCE
Confidence            3444 55544 4555 9999999999999999887533    45666666554     569999999999999  44776


Q ss_pred             CCccccCCc---chhHHHHHHHHH
Q psy17502        100 NPTPYQGAR---TADAIIDVALEA  120 (461)
Q Consensus       100 ~~~~y~g~~---~~~~i~~~i~~~  120 (461)
                      .+..+.|..   +.+.+.+++.+.
T Consensus        83 ~v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           83 QIGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             EEECHHHHHHHHHTTCHHHHHHHT
T ss_pred             EECChHHHHHHHhCChHHHHHHHc
Confidence            666666655   777888888764

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.03  E-value=1.8e-09  Score=96.96  Aligned_cols=145  Identities=12%  Similarity=0.171  Sum_probs=91.6

Q ss_pred             CCCeEEEEEE-CCCCHhHH-hhHHHHHHHHHHcCC-ce-EEEEEecCCch----------------------hhHhhcCC
Q psy17502         33 SDEVWIVEYY-APWCGHCQ-SFKDEYMKLATALKG-VV-KVGAVNADEEK----------------------SLSSSHGV   86 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~-~~~~~~~~~a~~~~~-~v-~~~~vd~~~~~----------------------~l~~~~~i   86 (461)
                      .+++++|.|| +.||++|+ ...|.+.++++++++ .+ .++.|+.+...                      ++++.||+
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  111 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM  111 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence            4568999999 99999999 999999999998864 48 88888876421                      24455555


Q ss_pred             C-----------CccEEEEEcCCCCCccccCCc---------chhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChh
Q psy17502         87 T-----------GFPTVKIFSDKRNPTPYQGAR---------TADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDS  146 (461)
Q Consensus        87 ~-----------~~P~l~~~~~g~~~~~y~g~~---------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  146 (461)
                      .           ..|+.+++++|.....+.|..         +.+++.+.+..                           
T Consensus       112 ~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~---------------------------  164 (241)
T 1nm3_A          112 LVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAP---------------------------  164 (241)
T ss_dssp             EEECTTTTCCEEECCEEEEEETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCT---------------------------
T ss_pred             eeecccccCcccceeEEEEEECCEEEEEEEeccCCCccceecCHHHHHHHhhh---------------------------
Confidence            3           235444445554333333332         22222221110                           


Q ss_pred             hhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc---HhhhhhcCcccccEEEE
Q psy17502        147 NFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH---QRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       147 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~---~~l~~~~~i~~~P~i~~  216 (461)
                          .  ......++.|..+||+.|......+.+.      .+.+-.+|++.+   .++.+.++..++|++++
T Consensus       165 ----~--~i~~~~i~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~~  225 (241)
T 1nm3_A          165 ----Q--HQVQESISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI  225 (241)
T ss_dssp             ----T--SCCCCCEEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             ----h--ccccceEEEEECCCChHHHHHHHHHHHc------CCceEEEECCCchHHHHHHHHhCCCCcCEEEE
Confidence                0  0123346778899999999887777653      245555666543   44777789889999864

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.03  E-value=6.2e-10  Score=92.52  Aligned_cols=90  Identities=13%  Similarity=0.271  Sum_probs=73.2

Q ss_pred             cCCCeEEEEEe-CCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCccc-----------HhhhhhcCcccccEEEEEc
Q psy17502        154 NSDDIWLVEFF-APWCGHCKNLEPHW---EKAASELEGKVKLGAVDATVH-----------QRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       154 ~~~~~~~v~f~-~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~~~-----------~~l~~~~~i~~~P~i~~~~  218 (461)
                      ..+++++|.|| ++||++|+.+.+.+   .++++.+...+.++.+|++..           .+++++|+|.++|+++++.
T Consensus        45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d  124 (154)
T 2ju5_A           45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFID  124 (154)
T ss_dssp             HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEEC
T ss_pred             hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEc
Confidence            34789999999 99999999999999   777766656799999998654           4889999999999999995


Q ss_pred             CCCCCCcCcccccCCC--CHHHHHHHHHhhc
Q psy17502        219 PGSRSASDAQEYNGGR--TSQDIVTWALNKY  247 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~--~~~~i~~fi~~~~  247 (461)
                      ..+   .....+ |..  +.+.+.++|.+..
T Consensus       125 ~~G---~~~~~~-G~~~~~~~~l~~~l~~~l  151 (154)
T 2ju5_A          125 AEG---KQLARM-GFEPGGGAAYVSKVKSAL  151 (154)
T ss_dssp             TTC---CEEEEE-CCCTTCHHHHHHHHHHHH
T ss_pred             CCC---CEEEEe-cCCCCCHHHHHHHHHHHH
Confidence            332   345566 877  8999999987654

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.03  E-value=3.4e-10  Score=95.15  Aligned_cols=97  Identities=19%  Similarity=0.274  Sum_probs=74.1

Q ss_pred             hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh-hhhhcCc--ccccEEEEE-cCCC
Q psy17502        146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR-IAGEFNI--RGYPTIKFF-SPGS  221 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~-l~~~~~i--~~~P~i~~~-~~~~  221 (461)
                      +.+... ...+++++|.||++||++|+.+.|.|.++++.....+.|+.|+++.+.. ++..+++  .++|++++| ++| 
T Consensus        37 ~~~~~~-~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G-  114 (164)
T 1sen_A           37 DGKKEA-AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSG-  114 (164)
T ss_dssp             HHHHHH-HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTS-
T ss_pred             HHHHHH-HhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCC-
Confidence            445443 3567899999999999999999999999877665557788888877766 7888888  569999999 455 


Q ss_pred             CCCcCcccccCC----------CCHHHHHHHHHhhc
Q psy17502        222 RSASDAQEYNGG----------RTSQDIVTWALNKY  247 (461)
Q Consensus       222 ~~~~~~~~y~g~----------~~~~~i~~fi~~~~  247 (461)
                         .....+.|.          .+.+.|.++|.+..
T Consensus       115 ---~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          115 ---KVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             ---CBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             ---CEEEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence               234445553          67889888887643

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.98  E-value=2.4e-09  Score=86.70  Aligned_cols=87  Identities=15%  Similarity=0.331  Sum_probs=74.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc----------------------cHhhhhhcCccccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV----------------------HQRIAGEFNIRGYP  212 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~----------------------~~~l~~~~~i~~~P  212 (461)
                      .+++++|.|+++||++|....+.+.++++.+. .+.|..++++.                      +..++++|++.++|
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  101 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP  101 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCC
Confidence            46789999999999999999999999999997 89999998866                      56789999999999


Q ss_pred             EEEEEcCCCCCCcCccccc---CCCCHHHHHHHHHhh
Q psy17502        213 TIKFFSPGSRSASDAQEYN---GGRTSQDIVTWALNK  246 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~---g~~~~~~i~~fi~~~  246 (461)
                      +++++..++   ... .+.   |..+.+.|.+++.+.
T Consensus       102 ~~~lid~~G---~i~-~~~~~~g~~~~~~l~~~l~~l  134 (136)
T 1lu4_A          102 AFVFYRADG---TST-FVNNPTAAMSQDELSGRVAAL  134 (136)
T ss_dssp             EEEEECTTS---CEE-EECCSSSCCCHHHHHHHHHHC
T ss_pred             EEEEECCCC---cEE-EEEcCCCccCHHHHHHHHHHH
Confidence            999996542   233 777   889999999999764

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.98  E-value=7e-10  Score=90.96  Aligned_cols=82  Identities=6%  Similarity=0.083  Sum_probs=64.4

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCch--------------------------hhHhhcC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEK--------------------------SLSSSHG   85 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~--------------------------~l~~~~~   85 (461)
                      .+++++|.||++||++|+...|.+.++++++++ .+.++.|+.+..+                          .+++.|+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            467999999999999999999999999999975 4889988887432                          4778899


Q ss_pred             CCCccEEEEEc-CCCCCccccCCcchhHHHHHH
Q psy17502         86 VTGFPTVKIFS-DKRNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        86 i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i  117 (461)
                      |.++|+.+++. +|+...+..   ..+++.+.+
T Consensus       111 v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l  140 (143)
T 4fo5_A          111 LRKGFKNFLINDEGVIIAANV---TPEKLTEIL  140 (143)
T ss_dssp             GGGCCCEEEECTTSBEEEESC---CHHHHHHHH
T ss_pred             CCCCCcEEEECCCCEEEEccC---CHHHHHHHH
Confidence            99999999987 665443332   344555444

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.98  E-value=3.7e-09  Score=85.46  Aligned_cols=88  Identities=17%  Similarity=0.319  Sum_probs=74.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc-----------------------cHhhhhhcCcccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV-----------------------HQRIAGEFNIRGY  211 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~-----------------------~~~l~~~~~i~~~  211 (461)
                      .+++++|.|+++||++|....+.+.++++.+. .+.|+.++++.                       +..+++.|++.++
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  102 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCC
Confidence            46789999999999999999999999999987 89999988743                       4678899999999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |+++++.+++   ... .+.|..+.++|.+++.+..
T Consensus       103 P~~~~id~~g---~i~-~~~g~~~~~~l~~~l~~~l  134 (136)
T 1zzo_A          103 PAYAFVDPHG---NVD-VVRGRMSQDELTRRVTALT  134 (136)
T ss_dssp             SEEEEECTTC---CEE-EEESCCCHHHHHHHHHHHC
T ss_pred             ceEEEECCCC---CEE-EEecCCCHHHHHHHHHHHh
Confidence            9999996542   233 7889999999999997653

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.96  E-value=2e-09  Score=90.42  Aligned_cols=90  Identities=10%  Similarity=0.165  Sum_probs=75.1

Q ss_pred             CCCeEEEEEECCCCHh-HHhhHHHHHHHHHHcCC-----ceEEEEEecCCch----------------------------
Q psy17502         33 SDEVWIVEYYAPWCGH-CQSFKDEYMKLATALKG-----VVKVGAVNADEEK----------------------------   78 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~-C~~~~~~~~~~a~~~~~-----~v~~~~vd~~~~~----------------------------   78 (461)
                      .+++++|.||++||++ |+...|.+.++++++++     ++.++.|+++.+.                            
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4679999999999998 99999999999998853     6888888886421                            


Q ss_pred             hhHhhcCCCCcc---------------EEEEEc-CCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         79 SLSSSHGVTGFP---------------TVKIFS-DKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        79 ~l~~~~~i~~~P---------------~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      .++++|+|...|               +++++. +|.....+.|..+.+++.+.+.+.+.
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            378899999999               666665 77777788899999999999888763

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.95  E-value=3.2e-09  Score=87.29  Aligned_cols=102  Identities=14%  Similarity=0.179  Sum_probs=80.0

Q ss_pred             EcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC-------------------------
Q psy17502        142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA-------------------------  196 (461)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~-------------------------  196 (461)
                      .++.+.+.... ..+++++|.|+++||++|....+.+.++++.+.+.+.|..+++                         
T Consensus        16 ~~~g~~~~~~~-~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (148)
T 2b5x_A           16 WLNGEVTREQL-IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPI   94 (148)
T ss_dssp             EESCCCCHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCE
T ss_pred             cccCcccchhh-cCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcce
Confidence            34444443322 3568899999999999999999999999999987799988884                         


Q ss_pred             --cccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        197 --TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       197 --~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                        +.+..+++.|++.++|+++++...+   .....+.|..+.+++.++|.+..
T Consensus        95 ~~d~~~~~~~~~~v~~~P~~~lid~~G---~i~~~~~g~~~~~~l~~~l~~~l  144 (148)
T 2b5x_A           95 FVDSDHALTDAFENEYVPAYYVFDKTG---QLRHFQAGGSGMKMLEKRVNRVL  144 (148)
T ss_dssp             EECSSCHHHHHTCCCCSSEEEEECTTC---BEEEEEESCSTTHHHHHHHHHHH
T ss_pred             EECCchhHHHHhCCCCCCEEEEECCCC---cEEEEecCCCCHHHHHHHHHHHH
Confidence              3355789999999999999995432   24556788888899999987654

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.95  E-value=1.2e-09  Score=83.37  Aligned_cols=77  Identities=13%  Similarity=0.104  Sum_probs=67.2

Q ss_pred             eEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHH
Q psy17502        158 IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQ  237 (461)
Q Consensus       158 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~  237 (461)
                      ..++.|+++||++|+.+.+.+++++..+.  +.|..+|++.+++++.+|++. +|++++|.+|     ... ..|..+.+
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG-----~~v-~~g~~~~~  100 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRLYNDR-VPVLFAVNED-----KEL-CHYFLDSD  100 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCHHHHHHSTTS-CSEEEETTTT-----EEE-ECSSCCCH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCHHHHHHhCCC-CceEEEEECC-----EEE-EecCCCHH
Confidence            56899999999999999999999998873  899999999999999999997 9999999877     222 45788889


Q ss_pred             HHHHHH
Q psy17502        238 DIVTWA  243 (461)
Q Consensus       238 ~i~~fi  243 (461)
                      .|.+|+
T Consensus       101 ~L~~~L  106 (107)
T 2fgx_A          101 VIGAYL  106 (107)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998886

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.95  E-value=3.3e-09  Score=86.85  Aligned_cols=86  Identities=20%  Similarity=0.392  Sum_probs=73.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCcc-------------------------cHhhhhhcCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATV-------------------------HQRIAGEFNI  208 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~-------------------------~~~l~~~~~i  208 (461)
                      .+++++|.|+++||++|....+.+.++++.+. ..+.|..++++.                         +..++++|++
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            67899999999999999999999999999997 579999988754                         5578999999


Q ss_pred             ccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       209 ~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      .++|+++++...+   .....+.|..+.+.+.++|
T Consensus       113 ~~~P~~~lid~~G---~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          113 ITIPTSFLLNEKG---EIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CEESEEEEECTTC---CEEEEEESCCCHHHHHHHH
T ss_pred             CccCeEEEEcCCC---cEEEEEcCCcCHHHHHHhh
Confidence            9999999995442   2455788999999998876

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.95  E-value=3.4e-09  Score=89.63  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=76.6

Q ss_pred             CCCeEEEEEECCCCHh-HHhhHHHHHHHHHHcC-----CceEEEEEecCCc----------------------------h
Q psy17502         33 SDEVWIVEYYAPWCGH-CQSFKDEYMKLATALK-----GVVKVGAVNADEE----------------------------K   78 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~-C~~~~~~~~~~a~~~~-----~~v~~~~vd~~~~----------------------------~   78 (461)
                      .+++++|.||++||++ |+...|.+.+++++++     .++.++.|+++.+                            .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4679999999999998 9999999999999984     3688888888731                            1


Q ss_pred             hhHhhcCCCCcc---------------EEEEEc-CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         79 SLSSSHGVTGFP---------------TVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        79 ~l~~~~~i~~~P---------------~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      .+++.|+|...|               +++++. +|.....|.|..+.+++.+.+.+.+...
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~  166 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAF  166 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence            578899999888               777775 7777778899999999999998877543

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.95  E-value=3.7e-10  Score=82.41  Aligned_cols=60  Identities=20%  Similarity=0.292  Sum_probs=49.4

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-CchhhHhhcCCCCccEEEEEcCCC
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-EEKSLSSSHGVTGFPTVKIFSDKR   99 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~P~l~~~~~g~   99 (461)
                      ++.|+++||++|+.+.+.+++++++++..+.+..||.+ +..++++++|++++|++++  +|+
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~   64 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGA   64 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCE
Confidence            78899999999999999999988776545666666654 5778999999999999987  554

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.95  E-value=2.9e-09  Score=93.94  Aligned_cols=87  Identities=17%  Similarity=0.338  Sum_probs=70.6

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecC-----------------------------CchhhHh
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNAD-----------------------------EEKSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~-----------------------------~~~~l~~   82 (461)
                      .+.+++|.||++||++|+...|.+.+++++++++ +.++.|+++                             ....+++
T Consensus        58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  137 (218)
T 3u5r_E           58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAK  137 (218)
T ss_dssp             TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHH
Confidence            3336999999999999999999999999999875 999999984                             3567999


Q ss_pred             hcCCCCccEEEEEc-CCCCCccccC-----------CcchhHHHHHHHHHH
Q psy17502         83 SHGVTGFPTVKIFS-DKRNPTPYQG-----------ARTADAIIDVALEAI  121 (461)
Q Consensus        83 ~~~i~~~P~l~~~~-~g~~~~~y~g-----------~~~~~~i~~~i~~~~  121 (461)
                      .|+|.++|+++++. +|+..  |.|           ..+.++|.+.|...+
T Consensus       138 ~~~v~~~P~~~liD~~G~i~--~~g~~d~~~~~~~~~~~~~~l~~~i~~ll  186 (218)
T 3u5r_E          138 AYGAACTPDFFLYDRERRLV--YHGQFDDARPGNGKDVTGADLRAAVDAVL  186 (218)
T ss_dssp             HHTCCEESEEEEECTTCBEE--EEECSSSCCTTSCCCCCCHHHHHHHHHHH
T ss_pred             HcCCCCCCeEEEECCCCcEE--EeccccccccccccccCHHHHHHHHHHHH
Confidence            99999999999996 55432  443           345677888887765

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=98.93  E-value=2.5e-09  Score=89.62  Aligned_cols=79  Identities=13%  Similarity=0.083  Sum_probs=65.5

Q ss_pred             EcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcC---cccccEEEEEc
Q psy17502        142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFN---IRGYPTIKFFS  218 (461)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~---i~~~P~i~~~~  218 (461)
                      .++++.+..+....+++++|.|+++||++|+...|.+.+++..+. .+.|..++.+.+++++.+|+   +.++||+++++
T Consensus        40 ~~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~  118 (167)
T 1z6n_A           40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVLD  118 (167)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEEC
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEEC
Confidence            455555554322246789999999999999999999999998874 69999999888888999887   99999999999


Q ss_pred             CCC
Q psy17502        219 PGS  221 (461)
Q Consensus       219 ~~~  221 (461)
                      +++
T Consensus       119 ~~G  121 (167)
T 1z6n_A          119 EEF  121 (167)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            863

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.92  E-value=2.9e-09  Score=106.80  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=83.2

Q ss_pred             CceEcCccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         17 DVIKLTTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ....++++.++. +.+ ..+..++.||++||++|+.+.|.+++++..+. ++.+.+||.++.++++++|+|.++|++++ 
T Consensus       100 ~~~~~~~~~~~~-i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~vd~~~~~~~~~~~~i~svPt~~i-  176 (521)
T 1hyu_A          100 HPSKEAQSLLEQ-IRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQNEITERNVMGVPAVFV-  176 (521)
T ss_dssp             CCCCSCHHHHHH-HHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE-
T ss_pred             CCCCCCHHHHHH-HHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEEEechhhHHHHHHhCCCccCEEEE-
Confidence            446778888887 433 45678999999999999999999999998876 79999999999999999999999999977 


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                       +|+..  ..|..+.++|.+|+...
T Consensus       177 -~g~~~--~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          177 -NGKEF--GQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             -TTEEE--EESCCCHHHHHHHHCCS
T ss_pred             -CCEEE--ecCCCCHHHHHHHHhhc
Confidence             66544  34899999999998654

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.92  E-value=1.1e-09  Score=83.61  Aligned_cols=79  Identities=8%  Similarity=0.030  Sum_probs=63.1

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC--CchhhHhhcCCCCccEEEEEcCCCCCccccCCcch
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD--EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTA  110 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~  110 (461)
                      .+.+.++.|+++||++|+.+.+.+++++.    .+.|..||++  ++++++++|| .++|+++  .+|+..  ..|..+.
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~----~i~~~~vdi~~~~~~el~~~~g-~~vP~l~--~~g~~~--~~~g~~~   84 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD----RFILQEVDITLPENSTWYERYK-FDIPVFH--LNGQFL--MMHRVNT   84 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS----SSEEEEEETTSSTTHHHHHHSS-SSCSEEE--ESSSEE--EESSCCH
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh----CCeEEEEECCCcchHHHHHHHC-CCCCEEE--ECCEEE--EecCCCH
Confidence            34578999999999999999998886642    3899999998  7889999999 9999874  466432  3456788


Q ss_pred             hHHHHHHHHH
Q psy17502        111 DAIIDVALEA  120 (461)
Q Consensus       111 ~~i~~~i~~~  120 (461)
                      +.|.+++.+.
T Consensus        85 ~~l~~~l~~~   94 (100)
T 1wjk_A           85 SKLEKQLRKL   94 (100)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHHHH
Confidence            8888888654

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.90  E-value=6.5e-09  Score=87.04  Aligned_cols=87  Identities=13%  Similarity=0.111  Sum_probs=68.6

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecC---------------------CchhhHhhcCCCC-
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGV-VKVGAVNAD---------------------EEKSLSSSHGVTG-   88 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~---------------------~~~~l~~~~~i~~-   88 (461)
                      .+.+++|.|| ++||++|+...|.+.+++++++++ +.++.|+++                     ...+++++|++.+ 
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF  107 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence            3334999999 999999999999999999999764 889988887                     4567899999999 


Q ss_pred             ---ccEEEEEc-CCCCCccccCCcc----hhHHHHHHHH
Q psy17502         89 ---FPTVKIFS-DKRNPTPYQGART----ADAIIDVALE  119 (461)
Q Consensus        89 ---~P~l~~~~-~g~~~~~y~g~~~----~~~i~~~i~~  119 (461)
                         +|+++++. +|+....+.|...    .+++++.+.+
T Consensus       108 ~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~  146 (161)
T 3drn_A          108 ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQ  146 (161)
T ss_dssp             SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred             CcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHH
Confidence               99999996 7766677777433    3344444443

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.90  E-value=2.6e-09  Score=78.88  Aligned_cols=75  Identities=21%  Similarity=0.246  Sum_probs=59.9

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch----hhHhhcC--CCCccEEEEEcCCCCCccccCCcchh
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK----SLSSSHG--VTGFPTVKIFSDKRNPTPYQGARTAD  111 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~P~l~~~~~g~~~~~y~g~~~~~  111 (461)
                      ++.|+++||++|+.+.+.+++++.+..+ +.+..+|+++++    ++++++|  +.++|+++  .+|+.+   .|   .+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~-i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~--~~g~~i---~~---~~   73 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF--VDQQHI---GG---YT   73 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEE--ETTEEE---ES---SH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCC-ceEEEEecccChHHHHHHHHHhCCCCceeCeEE--ECCEEE---EC---HH
Confidence            6789999999999999999999987655 899999997654    7999999  99999984  355433   22   36


Q ss_pred             HHHHHHHHHH
Q psy17502        112 AIIDVALEAI  121 (461)
Q Consensus       112 ~i~~~i~~~~  121 (461)
                      +|.+++.+..
T Consensus        74 ~l~~~~~~~~   83 (85)
T 1ego_A           74 DFAAWVKENL   83 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            7888877653

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.89  E-value=1.5e-08  Score=85.02  Aligned_cols=90  Identities=17%  Similarity=0.332  Sum_probs=75.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcccHhhhhhc---------------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATVHQRIAGEF---------------------------  206 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~~~~l~~~~---------------------------  206 (461)
                      .+++++|.|+++||++|....+.+.++++.+++. +.++.|+++...+.++++                           
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG  112 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence            4689999999999999999999999999999864 999999988766666665                           


Q ss_pred             CcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        207 NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       207 ~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++.++|+++++...+   .....+.|..+.+.+.++|.+..
T Consensus       113 ~i~~~P~~~lid~~G---~i~~~~~g~~~~~~l~~~l~~~l  150 (165)
T 3or5_A          113 GITGIPTSFVIDASG---NVSGVIVGPRSKADFDRIVKMAL  150 (165)
T ss_dssp             CSCSSSEEEEECTTS---BEEEEECSCCCHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCC---cEEEEEcCCCCHHHHHHHHHHHH
Confidence            899999999996442   24567789999999999998765

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.41  E-value=1.8e-10  Score=94.38  Aligned_cols=69  Identities=22%  Similarity=0.440  Sum_probs=58.2

Q ss_pred             CC-eEEEEEECCCCHhHHhhHHHHHHHHHHcC---CceEEEEEecCCc-------------------------hhhHhhc
Q psy17502         34 DE-VWIVEYYAPWCGHCQSFKDEYMKLATALK---GVVKVGAVNADEE-------------------------KSLSSSH   84 (461)
Q Consensus        34 ~~-~~lv~f~~~~c~~C~~~~~~~~~~a~~~~---~~v~~~~vd~~~~-------------------------~~l~~~~   84 (461)
                      ++ +++|.||++||++|+.+.|.+.+++++++   ..+.++.|++++.                         ..++++|
T Consensus        25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (143)
T 2lus_A           25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY  104 (143)
Confidence            45 99999999999999999999999999883   3578888887755                         3689999


Q ss_pred             CCCCccEEEEEc-CCCCCc
Q psy17502         85 GVTGFPTVKIFS-DKRNPT  102 (461)
Q Consensus        85 ~i~~~P~l~~~~-~g~~~~  102 (461)
                      +|.++|+++++. +|+...
T Consensus       105 ~v~~~P~~~lid~~G~i~~  123 (143)
T 2lus_A          105 GITGIPALVIVKKDGTLIS  123 (143)
Confidence            999999999998 664443

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.88  E-value=4.6e-09  Score=88.88  Aligned_cols=88  Identities=13%  Similarity=0.164  Sum_probs=69.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecC-------C----chhhH-------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNAD-------E----EKSLS-------------------   81 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~-------~----~~~l~-------------------   81 (461)
                      .+++++|.||++||++|+ ..|.+.+++++++++ +.++.|+++       +    ..+++                   
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            467999999999999999 999999999999764 888888774       1    11122                   


Q ss_pred             -----------hhcCCCCcc------EEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         82 -----------SSHGVTGFP------TVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        82 -----------~~~~i~~~P------~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                                 +.|++.++|      +.+++. +|.....+.|..+.+.+.+.|.+.+
T Consensus       110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  167 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL  167 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence                       246888999      777764 7877788899999999999988775

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.88  E-value=1.2e-08  Score=84.30  Aligned_cols=90  Identities=16%  Similarity=0.305  Sum_probs=74.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCcc------------------------cHhhhhhcC--
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATV------------------------HQRIAGEFN--  207 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~------------------------~~~l~~~~~--  207 (461)
                      .+++++|.||++||++|....+.+.++++.++ ..+.+..|+++.                        ...+++.|+  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            46899999999999999999999999999985 468998888752                        345778898  


Q ss_pred             cccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        208 IRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       208 i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +.++|+++++.+.+   .....+.|..+.+.|.++|.+..
T Consensus       103 v~~~P~~~lid~~G---~i~~~~~g~~~~~~l~~~l~~l~  139 (151)
T 3raz_A          103 VGVLPFTVVEAPKC---GYRQTITGEVNEKSLTDAVKLAH  139 (151)
T ss_dssp             SCCSSEEEEEETTT---TEEEECCSCCCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCC---cEEEEECCCCCHHHHHHHHHHHH
Confidence            99999999996543   25667889999999999997654

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=2.1e-10  Score=95.96  Aligned_cols=87  Identities=13%  Similarity=0.195  Sum_probs=66.9

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHH-HHHHcC--CceEEEEEecCCchhhHhhcC------------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMK-LATALK--GVVKVGAVNADEEKSLSSSHG------------------------   85 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~-~a~~~~--~~v~~~~vd~~~~~~l~~~~~------------------------   85 (461)
                      .+++++|.||++||++|+...|.+.+ +++++.  .++.++.|++++.++.+++|.                        
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            46799999999999999999999998 888776  358899999887655444443                        


Q ss_pred             CCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHH
Q psy17502         86 VTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        86 i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +.++|+++++. +|+....+.| .+.+++.+++.+.
T Consensus       112 ~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l  146 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQI  146 (159)
Confidence            57799999994 7766666666 4555666666554

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.87  E-value=1e-08  Score=84.66  Aligned_cols=90  Identities=17%  Similarity=0.311  Sum_probs=75.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc----------------------cHhhhhhcCcccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV----------------------HQRIAGEFNIRGY  211 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~----------------------~~~l~~~~~i~~~  211 (461)
                      .+++++|.|+++||++|....+.+.++++.+.+ .+.+..|+++.                      +..+++.|++.++
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            467999999999999999999999999999976 58888887754                      3478899999999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |+++++...+   .....+.|..+.+.|.++|.+..
T Consensus       105 P~~~lid~~G---~i~~~~~G~~~~~~l~~~l~~ll  137 (151)
T 2f9s_A          105 PTTFLINPEG---KVVKVVTGTMTESMIHDYMNLIK  137 (151)
T ss_dssp             CEEEEECTTS---EEEEEEESCCCHHHHHHHHHHHS
T ss_pred             CeEEEECCCC---cEEEEEeCCCCHHHHHHHHHHHH
Confidence            9999995442   34556789899999999998765

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.87  E-value=2.3e-09  Score=90.77  Aligned_cols=87  Identities=18%  Similarity=0.218  Sum_probs=71.1

Q ss_pred             CCCeEEEEEECCCCHh-HHhhHHHHHHHHHHcCC----ceEEEEEecCCc----------------------------hh
Q psy17502         33 SDEVWIVEYYAPWCGH-CQSFKDEYMKLATALKG----VVKVGAVNADEE----------------------------KS   79 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~-C~~~~~~~~~~a~~~~~----~v~~~~vd~~~~----------------------------~~   79 (461)
                      .+++++|.||++||++ |+...|.+.++++++++    ++.++.|+++.+                            ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            4679999999999997 99999999999999873    599999998743                            24


Q ss_pred             hHhhcC---------------CCCccEEEEEcCCCCCccccCCc--chhHHHHHHHH
Q psy17502         80 LSSSHG---------------VTGFPTVKIFSDKRNPTPYQGAR--TADAIIDVALE  119 (461)
Q Consensus        80 l~~~~~---------------i~~~P~l~~~~~g~~~~~y~g~~--~~~~i~~~i~~  119 (461)
                      ++++|+               |.++|+++++.+|+....+.|..  +.+.+.+.|.+
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~  170 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQA  170 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHH
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHH
Confidence            666665               46789999999776667788887  88888888765

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.85  E-value=3.8e-09  Score=77.85  Aligned_cols=74  Identities=12%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHH
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDI  239 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i  239 (461)
                      ++.|+++||++|+.+.+.+++++..+     +..+|++.+++++.+|++. .|++++ .+|     ...  .|..+.+.|
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G-----~~v--~g~~~~~~L   68 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDAALESAYGLR-VPVLRD-PMG-----REL--DWPFDAPRL   68 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCHHHHHHHTTT-CSEEEC-TTC-----CEE--ESCCCHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCHHHHHHhCCC-cCeEEE-ECC-----EEE--eCCCCHHHH
Confidence            68899999999999999998876432     6789999999999999998 999988 655     222  288899999


Q ss_pred             HHHHHhhc
Q psy17502        240 VTWALNKY  247 (461)
Q Consensus       240 ~~fi~~~~  247 (461)
                      .+|+....
T Consensus        69 ~~~l~~~~   76 (87)
T 1ttz_A           69 RAWLDAAP   76 (87)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHHHH
Confidence            99997643

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.85  E-value=7.9e-09  Score=84.82  Aligned_cols=91  Identities=12%  Similarity=0.059  Sum_probs=62.1

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHHHHHH---HHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCccc
Q psy17502        153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAA---SELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQE  229 (461)
Q Consensus       153 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a---~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~  229 (461)
                      ..++++++|.|+++||++|+.+.+.+.+..   ......+..+.+| ....+++.++++.++||++++.+.++   ...+
T Consensus        41 ~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD-~e~~~~~~~~~v~~~PT~~f~~~~G~---~v~~  116 (151)
T 3ph9_A           41 QKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLM-HETTDKNLSPDGQYVPRIMFVDPSLT---VRAD  116 (151)
T ss_dssp             HHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEES-SCCSCGGGCTTCCCSSEEEEECTTSC---BCTT
T ss_pred             HHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEec-CCchhhHhhcCCCCCCEEEEECCCCC---EEEE
Confidence            456899999999999999999999888643   2222234444443 23445678999999999999984432   3444


Q ss_pred             ccCC----------CCHHHHHHHHHhhc
Q psy17502        230 YNGG----------RTSQDIVTWALNKY  247 (461)
Q Consensus       230 y~g~----------~~~~~i~~fi~~~~  247 (461)
                      ..|.          .+.+.+++.+.+..
T Consensus       117 ~~G~~~~~~~~~~~~~~~~ll~~~~~al  144 (151)
T 3ph9_A          117 IAGRYSNRLYTYEPRDLPLLIENMKKAL  144 (151)
T ss_dssp             CCCSCTTSTTCCCGGGHHHHHHHHHHHH
T ss_pred             EeCCcCCcccccchhhHHHHHHHHHHHH
Confidence            4554          34567777776543

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.84  E-value=1e-08  Score=88.44  Aligned_cols=90  Identities=13%  Similarity=0.137  Sum_probs=72.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c----hhhH-hh----------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E----KSLS-SS----------------   83 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~----~~l~-~~----------------   83 (461)
                      .++++||.||++||++|+...|.+.+++++++++ +.++.|+++.       .    .+.+ ++                
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            5679999999999999999999999999999764 9999998872       1    1222 22                


Q ss_pred             -------------cCCCCcc------EEEEEc-CCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         84 -------------HGVTGFP------TVKIFS-DKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        84 -------------~~i~~~P------~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                                   +++.++|      +.+++. +|+....+.|..+.+.+.+.|.+.+.
T Consensus       127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                         4778888      666664 78777788999999999999888763

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.83  E-value=1.6e-08  Score=83.81  Aligned_cols=87  Identities=18%  Similarity=0.295  Sum_probs=74.9

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC---------------------------cccHhhhhhcCcc
Q psy17502        157 DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA---------------------------TVHQRIAGEFNIR  209 (461)
Q Consensus       157 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~---------------------------~~~~~l~~~~~i~  209 (461)
                      ++++|.|+++||++|....+.+.++++.+  .+.+..|++                           +....+++.|++.
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL  108 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence            88999999999999999999999999999  688888887                           3567889999999


Q ss_pred             cccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhcc
Q psy17502        210 GYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYT  248 (461)
Q Consensus       210 ~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~  248 (461)
                      ++|+++++...+   .....+.|..+.+.+.++|.+...
T Consensus       109 ~~P~~~lid~~G---~i~~~~~g~~~~~~l~~~l~~~~~  144 (154)
T 3ia1_A          109 GQPWTFVVDREG---KVVALFAGRAGREALLDALLLAGA  144 (154)
T ss_dssp             SSCEEEEECTTS---EEEEEEESBCCHHHHHHHHHHTTC
T ss_pred             cccEEEEECCCC---CEEEEEcCCCCHHHHHHHHHhccC
Confidence            999998885442   345677899999999999988763

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.83  E-value=1.6e-08  Score=81.66  Aligned_cols=88  Identities=18%  Similarity=0.310  Sum_probs=72.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC----------------------------cccHhhhhhc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA----------------------------TVHQRIAGEF  206 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~----------------------------~~~~~l~~~~  206 (461)
                      .+++++|.|+++||++|....+.+.++++.+.+.+.+..+++                            +.+..++++|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            468899999999999999999999999999777888888842                            2345688999


Q ss_pred             CcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        207 NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       207 ~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      ++.++|+++++.+.+   .....+.|..+.+.+.+++.+
T Consensus       101 ~v~~~P~~~lid~~G---~i~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A          101 GVRSYPTQAFIDKEG---KLVKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             TCCSSSEEEEECTTC---CEEEEEESCCCHHHHHHHHHH
T ss_pred             CcccCCeEEEECCCC---cEEEeecCCCcHHHHHHHHHh
Confidence            999999999995442   245677899999999998865

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.83  E-value=1.5e-08  Score=85.49  Aligned_cols=89  Identities=15%  Similarity=0.175  Sum_probs=69.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c----hhh-Hhhc---------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E----KSL-SSSH---------------   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~----~~l-~~~~---------------   84 (461)
                      .+++++|.||++||++|+...|.+.+++++++++ +.++.|+++.       .    .+. .+++               
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS  109 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence            4679999999999999999999999999999764 9999998863       1    122 1222               


Q ss_pred             --------------C-----CCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         85 --------------G-----VTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        85 --------------~-----i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                                    +     |+++|+.+++. +|+....+.|..+.+.+.+.|.+.+
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  166 (169)
T 2v1m_A          110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL  166 (169)
T ss_dssp             TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence                          3     34457777775 7777778899888999999888765

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.82  E-value=4.9e-09  Score=87.98  Aligned_cols=104  Identities=19%  Similarity=0.255  Sum_probs=77.2

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEE------------------------
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAV------------------------  194 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v------------------------  194 (461)
                      +..++.+.+... ...+++++|.||++||++|+...+.+.++++.++ ..+.+..|                        
T Consensus        23 l~~~~g~~~~~~-~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~  101 (164)
T 2h30_A           23 MKTADNRPASVY-LKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYP  101 (164)
T ss_dssp             CEETTSSBGGGG-CCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             cCCCCCCEeeHH-HhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCC
Confidence            455555555432 2356799999999999999999999999998864 23444333                        


Q ss_pred             ----eCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        195 ----DATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       195 ----~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                          +++.+..++++|++.++|+++++...+   .....+.|..+.+.|.++|.+..
T Consensus       102 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G---~i~~~~~g~~~~~~l~~~i~~~~  155 (164)
T 2h30_A          102 KLPVVTDNGGTIAQNLNISVYPSWALIGKDG---DVQRIVKGSINEAQALALIRNPN  155 (164)
T ss_dssp             TSCEEECTTCHHHHHTTCCSSSEEEEECTTS---CEEEEEESCCCHHHHHHHHHCTT
T ss_pred             cceEEEcCchHHHHHcCCCccceEEEECCCC---cEEEEEcCCCCHHHHHHHHHHHH
Confidence                334456789999999999999995432   24556789999999999997654

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.81  E-value=2.1e-08  Score=82.80  Aligned_cols=90  Identities=11%  Similarity=0.288  Sum_probs=75.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccH-----------------------hhhhhcCccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQ-----------------------RIAGEFNIRG  210 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~-----------------------~l~~~~~i~~  210 (461)
                      .+++++|.|+++||++|....+.+.++++.+.+ .+.+..|+++...                       .+++.|++.+
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            467899999999999999999999999999876 5999999877654                       6888999999


Q ss_pred             ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        211 YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       211 ~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +|+++++.+.+   .....+.|..+.+.|.++|.+..
T Consensus       109 ~P~~~lid~~G---~i~~~~~g~~~~~~l~~~l~~~~  142 (152)
T 2lja_A          109 IPRFILLDRDG---KIISANMTRPSDPKTAEKFNELL  142 (152)
T ss_dssp             SCCEEEECTTS---CEEESSCCCTTCHHHHHHHHHHH
T ss_pred             CCEEEEECCCC---eEEEccCCCCCHHHHHHHHHHHh
Confidence            99999998542   24455678888899999998765

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.80  E-value=9.7e-09  Score=86.67  Aligned_cols=89  Identities=13%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c----hhhHh-hc---------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E----KSLSS-SH---------------   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~----~~l~~-~~---------------   84 (461)
                      .+++++|.||++||++|+...|.+.+++++++++ +.++.|+++.       .    .+.++ ++               
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            5689999999999999999999999999999875 9999998852       1    22333 32               


Q ss_pred             --------------CC--CCcc---EEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         85 --------------GV--TGFP---TVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        85 --------------~i--~~~P---~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                                    ++  .++|   +.+++. +|+....+.|..+.+.+.++|.+.+
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  167 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLL  167 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHT
T ss_pred             chHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHh
Confidence                          44  6678   777775 7877788899999999999888765

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.80  E-value=3.4e-08  Score=81.55  Aligned_cols=92  Identities=16%  Similarity=0.360  Sum_probs=73.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcccH----------------------hhhhhcCcccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATVHQ----------------------RIAGEFNIRGY  211 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~~~----------------------~l~~~~~i~~~  211 (461)
                      .+++++|.|+++||++|....+.+.++++.+.+. +.+..++++.+.                      .+++.|++.++
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            4679999999999999999999999999999764 888888876544                      67788999999


Q ss_pred             cEEEEEcCCCCCCcCcccccCC--CCHHHHHHHHHhhccC
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGG--RTSQDIVTWALNKYTE  249 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~--~~~~~i~~fi~~~~~~  249 (461)
                      |+++++...+   .....+.|.  .+.+.|.++|.+....
T Consensus       107 P~~~lid~~G---~i~~~~~g~~~~~~~~l~~~i~~~~~~  143 (152)
T 3gl3_A          107 PTSFLIDRNG---KVLLQHVGFRPADKEALEQQILAALGG  143 (152)
T ss_dssp             SEEEEECTTS---BEEEEEESCCTTTHHHHHHHHHHHTC-
T ss_pred             CeEEEECCCC---CEEEEEccCCCcCHHHHHHHHHHHHcc
Confidence            9999985442   244556674  4668999999887633

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.80  E-value=1.5e-08  Score=84.88  Aligned_cols=78  Identities=18%  Similarity=0.287  Sum_probs=65.4

Q ss_pred             EcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhH-HH--HHHHHHhcCceEEEEEeCcccHhhhhhc--------Cccc
Q psy17502        142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEP-HW--EKAASELEGKVKLGAVDATVHQRIAGEF--------NIRG  210 (461)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~-~~--~~~a~~~~~~i~f~~v~~~~~~~l~~~~--------~i~~  210 (461)
                      ....+.+... ...+++++|.|+++||++|+.+.+ .|  .++++.+.+.+.++.||.++.+++.+.|        |+.+
T Consensus        26 ~~~~ea~~~A-~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g  104 (173)
T 3ira_A           26 PWGEEAFEKA-RKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGG  104 (173)
T ss_dssp             CSSHHHHHHH-HHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CcCHHHHHHH-HHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCC
Confidence            3456777765 467899999999999999999988 44  4677777778999999999999998888        9999


Q ss_pred             ccEEEEEcCC
Q psy17502        211 YPTIKFFSPG  220 (461)
Q Consensus       211 ~P~i~~~~~~  220 (461)
                      +|+++++.+.
T Consensus       105 ~Pt~v~l~~d  114 (173)
T 3ira_A          105 WPLNIIMTPG  114 (173)
T ss_dssp             SSEEEEECTT
T ss_pred             CcceeeECCC
Confidence            9999999854

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.79  E-value=1.4e-08  Score=83.39  Aligned_cols=88  Identities=14%  Similarity=0.202  Sum_probs=72.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcccHh-------------------------hhhhcCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATVHQR-------------------------IAGEFNI  208 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~~~~-------------------------l~~~~~i  208 (461)
                      .+++++|.|+++||++|....+.+.++++.+++. +.|..|+++...+                         +++.|++
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i  109 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI  109 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence            4679999999999999999999999999999865 9999998876665                         8999999


Q ss_pred             ccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       209 ~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      .++|+++++...+   .....+.|..+.+++.+.+.+
T Consensus       110 ~~~P~~~lid~~G---~i~~~~~g~~~~~~~l~~l~~  143 (148)
T 3hcz_A          110 YATPVLYVLDKNK---VIIAKRIGYENLDDFLVQYEK  143 (148)
T ss_dssp             CSSCEEEEECTTC---BEEEESCCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCC---cEEEecCCHHHHHHHHHHHHH
Confidence            9999999995442   245566777777777776654

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.77  E-value=4.2e-08  Score=81.10  Aligned_cols=90  Identities=18%  Similarity=0.304  Sum_probs=74.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeC-----------------------cccHhhhhhcCccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDA-----------------------TVHQRIAGEFNIRG  210 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~-----------------------~~~~~l~~~~~i~~  210 (461)
                      .+++++|.|+++||++|....+.+.++++.+.+ .+.+..++.                       +.+..+++.|++.+
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            468999999999999999999999999999875 477776542                       34567899999999


Q ss_pred             ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        211 YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       211 ~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +|+++++...+   .....|.|..+.+.|.++|.+.+
T Consensus       107 ~P~~~lid~~G---~i~~~~~g~~~~~~l~~~l~~ll  140 (153)
T 2l5o_A          107 YPTSVLIGKKG---EILKTYVGEPDFGKLYQEIDTAW  140 (153)
T ss_dssp             SSEEEEECSSS---CCCEEEESSCCHHHHHHHHHHHH
T ss_pred             cCeEEEECCCC---cEEEEEcCCCCHHHHHHHHHHHH
Confidence            99999996443   24556889999999999998765

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.76  E-value=1.4e-08  Score=87.97  Aligned_cols=89  Identities=16%  Similarity=0.179  Sum_probs=73.9

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC-------------------------chhhHhhcC
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE-------------------------EKSLSSSHG   85 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~   85 (461)
                      .+++++|.|| ++||++|+...|.+.++++++++ .+.++.|+.+.                         +..+++.|+
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            4579999999 99999999999999999999976 48888888864                         346888999


Q ss_pred             CC-----CccEEEEEc-CCCCCccccCCc----chhHHHHHHHHHH
Q psy17502         86 VT-----GFPTVKIFS-DKRNPTPYQGAR----TADAIIDVALEAI  121 (461)
Q Consensus        86 i~-----~~P~l~~~~-~g~~~~~y~g~~----~~~~i~~~i~~~~  121 (461)
                      +.     ++|+++++. +|+....+.|..    +.+++.+.+....
T Consensus       124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  169 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  169 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            99     999999996 776666666654    6788888888765

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.76  E-value=1e-08  Score=88.08  Aligned_cols=90  Identities=22%  Similarity=0.176  Sum_probs=74.8

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC-------------------------chhhHhhcC
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE-------------------------EKSLSSSHG   85 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~-------------------------~~~l~~~~~   85 (461)
                      .+++++|.|| ++||++|+...|.+.++++++++ .+.++.|+++.                         +..+++.|+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            4579999999 99999999999999999999875 48888888864                         346888999


Q ss_pred             CC------CccEEEEEc-CCCCCccccCCc----chhHHHHHHHHHHh
Q psy17502         86 VT------GFPTVKIFS-DKRNPTPYQGAR----TADAIIDVALEAIR  122 (461)
Q Consensus        86 i~------~~P~l~~~~-~g~~~~~y~g~~----~~~~i~~~i~~~~~  122 (461)
                      +.      ++|+++++. +|.....+.|..    +.+++.+.+.....
T Consensus       110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            99      999999995 776666676653    68889998887654

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.75  E-value=1.2e-08  Score=85.21  Aligned_cols=78  Identities=12%  Similarity=0.134  Sum_probs=63.7

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC-----------------------chhhHhhcCCC
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE-----------------------EKSLSSSHGVT   87 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~-----------------------~~~l~~~~~i~   87 (461)
                      .+++++|.|| ++||++|+...|.+.++++++++ .+.++.|+++.                       +..+++.|++.
T Consensus        35 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~  114 (160)
T 1xvw_A           35 GAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF  114 (160)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCc
Confidence            3349999998 99999999999999999999975 48888888864                       56789999999


Q ss_pred             ----Ccc--EEEEEc-CCCCCccccCCcch
Q psy17502         88 ----GFP--TVKIFS-DKRNPTPYQGARTA  110 (461)
Q Consensus        88 ----~~P--~l~~~~-~g~~~~~y~g~~~~  110 (461)
                          ++|  +++++. +|.....+.|..+.
T Consensus       115 ~~~~~~p~~~~~lid~~G~i~~~~~g~~~~  144 (160)
T 1xvw_A          115 NEQAGIANRGTFVVDRSGIIRFAEMKQPGE  144 (160)
T ss_dssp             ETTTTEECSEEEEECTTSBEEEEEECCTTC
T ss_pred             cccCCCeeeeEEEECCCCeEEEEEecCCCC
Confidence                999  666665 77666777776543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.75  E-value=5.1e-08  Score=81.24  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=73.7

Q ss_pred             CCCeEEEEEeCCCChhhhh-hhHHHHHHHHHhcCc-eEEEEEeC----------------------------cccHh---
Q psy17502        155 SDDIWLVEFFAPWCGHCKN-LEPHWEKAASELEGK-VKLGAVDA----------------------------TVHQR---  201 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~-~~~~~~~~a~~~~~~-i~f~~v~~----------------------------~~~~~---  201 (461)
                      .+++++|.|+++||++|.. ..+.+.++++.+++. +.+..|++                            +....   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            4689999999999999999 599999999999864 88888874                            22233   


Q ss_pred             ---hhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        202 ---IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       202 ---l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                         +++.|++.++|+++++.+.+   .....+.|..+.+.+.++|.+..
T Consensus       109 ~~~~~~~~~v~~~P~~~lid~~G---~i~~~~~g~~~~~~l~~~i~~ll  154 (160)
T 3lor_A          109 IPSTMKKYRLEGTPSIILADRKG---RIRQVQFGQVDDFVLGLLLGSLL  154 (160)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTS---BEEEEEESCCCHHHHHHHHHHHH
T ss_pred             hhhHHHhcccCccceEEEECCCC---cEEEEecCcCCHHHHHHHHHHHH
Confidence               88999999999999997543   24566789999999999997765

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.73  E-value=2.7e-08  Score=85.50  Aligned_cols=89  Identities=11%  Similarity=0.123  Sum_probs=69.8

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c-hhh---Hh-h----------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E-KSL---SS-S----------------   83 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~-~~l---~~-~----------------   83 (461)
                      .++++||.||++||++|+...|.+.+++++++++ +.++.|+++.       . .++   ++ +                
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            5679999999999999999999999999999875 8888888762       1 111   11 1                


Q ss_pred             ----------------cCCCCcc---EEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         84 ----------------HGVTGFP---TVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        84 ----------------~~i~~~P---~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                                      +++..+|   +.+++. +|.....+.|..+.+.+.+.|.+.+
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL  182 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLL  182 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC
T ss_pred             chhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence                            2344566   888875 7777778899999999999888775

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.73  E-value=3.1e-08  Score=83.41  Aligned_cols=87  Identities=9%  Similarity=0.163  Sum_probs=67.7

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe-----------------------CcccHhhhhhcCccc
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD-----------------------ATVHQRIAGEFNIRG  210 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~-----------------------~~~~~~l~~~~~i~~  210 (461)
                      ..+++++|.||++||++|....+.+.++++.   .+.+..|+                       ++.+..++++|++.+
T Consensus        49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  125 (168)
T 2b1k_A           49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG  125 (168)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCS
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccc
Confidence            3678999999999999999999999998876   46666665                       334567888999999


Q ss_pred             ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        211 YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       211 ~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|+.+++...+   .....+.|..+.+.+.++|.+.
T Consensus       126 ~P~~~lid~~G---~i~~~~~g~~~~~~l~~~l~~~  158 (168)
T 2b1k_A          126 APETFLIDGNG---IIRYRHAGDLNPRVWEEEIKPL  158 (168)
T ss_dssp             SSEEEEECTTS---BEEEEEESCCCHHHHHHTTHHH
T ss_pred             cCEEEEECCCC---eEEEEEeCCCCHHHHHHHHHHH
Confidence            99766665432   2455678988999988887654

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.72  E-value=4.4e-08  Score=85.52  Aligned_cols=89  Identities=13%  Similarity=-0.002  Sum_probs=68.3

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC----c----hh---hHh------hcC---------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE----E----KS---LSS------SHG---------   85 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~----~----~~---l~~------~~~---------   85 (461)
                      .++++||.||++||++|+...|.+++++++++++ +.++.|+++.    +    .+   .++      +++         
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~  125 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKC  125 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEEe
Confidence            4679999999999999999999999999999765 8999998861    1    11   222      333         


Q ss_pred             --------------------------------------------CCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHH
Q psy17502         86 --------------------------------------------VTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        86 --------------------------------------------i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                                                                  |.+.|+.+++. +|+....|.|..+.+++.+.|.+.
T Consensus       126 d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~l  205 (208)
T 2f8a_A          126 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL  205 (208)
T ss_dssp             CCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred             ecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence                                                        33347777765 777777888988888888888765


Q ss_pred             H
Q psy17502        121 I  121 (461)
Q Consensus       121 ~  121 (461)
                      +
T Consensus       206 l  206 (208)
T 2f8a_A          206 L  206 (208)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.72  E-value=9.5e-09  Score=89.23  Aligned_cols=89  Identities=13%  Similarity=0.131  Sum_probs=73.4

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC----------------------------chhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE----------------------------EKSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~----------------------------~~~l~~   82 (461)
                      .+++++|.|| ++||++|+...|.+.++++++++ .+.++.|+.+.                            +.++++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            4579999999 99999999999999999999865 48888888764                            346889


Q ss_pred             hcCCC-----CccEEEEEc-CCCCCccccCCc----chhHHHHHHHHHH
Q psy17502         83 SHGVT-----GFPTVKIFS-DKRNPTPYQGAR----TADAIIDVALEAI  121 (461)
Q Consensus        83 ~~~i~-----~~P~l~~~~-~g~~~~~y~g~~----~~~~i~~~i~~~~  121 (461)
                      +|++.     ++|+++++. +|.....+.|..    +.+++.+.+....
T Consensus       112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99999     999999996 776666666654    6778888887764

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.72  E-value=7.4e-08  Score=80.10  Aligned_cols=90  Identities=14%  Similarity=0.201  Sum_probs=73.3

Q ss_pred             CCCeEEEEEeCCCChhhhhh-hHHHHHHHHHhcC-ceEEEEEeCc----------------------------ccH----
Q psy17502        155 SDDIWLVEFFAPWCGHCKNL-EPHWEKAASELEG-KVKLGAVDAT----------------------------VHQ----  200 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~-~~~~~~~a~~~~~-~i~f~~v~~~----------------------------~~~----  200 (461)
                      .+++++|.|+++||++|... .+.+.++++.+++ .+.|..|+++                            ...    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            46899999999999999996 9999999999974 6888888742                            111    


Q ss_pred             -hhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        201 -RIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       201 -~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                       .+++.|++.++|+++++...+   .....+.|..+.+.+.++|.+..
T Consensus       107 ~~~~~~~~v~~~P~~~lid~~G---~i~~~~~g~~~~~~l~~~i~~ll  151 (158)
T 3eyt_A          107 PRTMAAYQMRGTPSLLLIDKAG---DLRAHHFGDVSELLLGAEIATLL  151 (158)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTS---EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEECCCC---CEEEEEeCCCCHHHHHHHHHHHh
Confidence             478999999999999996543   24556789999999999987765

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.72  E-value=6e-08  Score=79.54  Aligned_cols=87  Identities=15%  Similarity=0.278  Sum_probs=69.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHh-cCc-eEEEEEeCcc-------------------------cHhhhhhcC
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASEL-EGK-VKLGAVDATV-------------------------HQRIAGEFN  207 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~-~~~-i~f~~v~~~~-------------------------~~~l~~~~~  207 (461)
                      .+++++|.|+++||++|....+.+.++++.+ .+. +.+..|+++.                         +..++++|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            4689999999999999999999999999999 654 8998887765                         347899999


Q ss_pred             cccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        208 IRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       208 i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +.++|+++++...++   ....+.   +.+.+.+++.+..
T Consensus       112 v~~~P~~~lid~~G~---i~~~~~---~~~~l~~~l~~ll  145 (148)
T 3fkf_A          112 ILTLPTNILLSPTGK---ILARDI---QGEALTGKLKELL  145 (148)
T ss_dssp             CCSSSEEEEECTTSB---EEEESC---CHHHHHHHHHHHC
T ss_pred             CCCcCEEEEECCCCe---EEEecC---CHHHHHHHHHHHH
Confidence            999999999965421   222222   7888888887643

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.72  E-value=2.9e-08  Score=87.27  Aligned_cols=82  Identities=18%  Similarity=0.322  Sum_probs=62.9

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe---------------------------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN---------------------------------------   73 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd---------------------------------------   73 (461)
                      ..+++++.|+++||++|+++.|.+.++++.   ++.+..+.                                       
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~  161 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  161 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChh
Confidence            356899999999999999999999998763   24443322                                       


Q ss_pred             -c----CCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         74 -A----DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        74 -~----~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                       |    +++.++++++||+++|++ ++.+|   ..+.|..+.+.|.+++....
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gtPt~-v~~dG---~~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          162 SCDVDIADHYALGVQLGVSGTPAV-VLSNG---TLVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEE-ECTTS---CEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCccCEE-EEcCC---eEecCCCCHHHHHHHHHHhh
Confidence             1    223568899999999998 45566   35689999999999988764

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.71  E-value=6.1e-08  Score=82.23  Aligned_cols=83  Identities=19%  Similarity=0.262  Sum_probs=66.3

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec--------------------------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA--------------------------------------   74 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~--------------------------------------   74 (461)
                      ..++.++.|+++||++|+++.|.+.++.+++.+ +.+..++.                                      
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~   99 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKAN   99 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCC
Confidence            356899999999999999999999999988755 55555442                                      


Q ss_pred             -------------------------------CCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         75 -------------------------------DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        75 -------------------------------~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                                                     ..+.++++++||.++||+++  +|   ..+.|..+.+.+.+.|.+.+
T Consensus       100 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g---~~~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A          100 ETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--ED---ALVPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TT---EEECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CC---EEeeCCCCHHHHHHHHHHHH
Confidence                                           22334778899999999987  55   36789999999999988765

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.71  E-value=3.9e-08  Score=83.88  Aligned_cols=92  Identities=16%  Similarity=0.111  Sum_probs=70.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c----hhhHhh-cCCC------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E----KSLSSS-HGVT------------   87 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~----~~l~~~-~~i~------------   87 (461)
                      .++++||.||++||++|+...|.+.+++++++++ +.++.|+++.       .    .+.+++ +++.            
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            5679999999999999999999999999999875 8999998753       2    235555 4432            


Q ss_pred             --------------CccE----EEEE-cCCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         88 --------------GFPT----VKIF-SDKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        88 --------------~~P~----l~~~-~~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                                    ++|+    .+++ ++|.....|.|..+.+.+.+.|.+.+...
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~  172 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQV  172 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHH
T ss_pred             cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence                          2565    5555 48877788899999888888887776443

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.70  E-value=1.5e-08  Score=86.59  Aligned_cols=88  Identities=13%  Similarity=0.074  Sum_probs=67.0

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c----hhhHhh-c---------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E----KSLSSS-H---------------   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~----~~l~~~-~---------------   84 (461)
                      .+++++|.||++||++|+...|.+.+++++++++ +.++.|+++.       .    .+.+++ +               
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~  127 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT  127 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence            4679999999999999999999999999999765 9999998863       1    123333 2               


Q ss_pred             --------CCCCcc-------EEEEE-cCCCCCccccCCcchhHHHHHHHHH
Q psy17502         85 --------GVTGFP-------TVKIF-SDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        85 --------~i~~~P-------~l~~~-~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                              ++.++|       +.+++ ++|.....+.|..+.+++.+.|.+.
T Consensus       128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  179 (181)
T 2p31_A          128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITAL  179 (181)
T ss_dssp             TSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTT
T ss_pred             cchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence                    244578       55555 4777777788888888887777643

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.69  E-value=1.1e-07  Score=78.47  Aligned_cols=87  Identities=17%  Similarity=0.290  Sum_probs=67.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcc-------------------------cHhhhhhcCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATV-------------------------HQRIAGEFNI  208 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~-------------------------~~~l~~~~~i  208 (461)
                      .+++++|.|+++||++|....+.+.++++.+.+. +.+..|+++.                         ...+++.|++
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            4679999999999999999999999999999764 9999988876                         5678899999


Q ss_pred             ccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       209 ~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      .++|+++++...+   .....+   .+.+++.++|.+..
T Consensus       108 ~~~P~~~lid~~G---~i~~~~---~~~~~l~~~l~~l~  140 (152)
T 2lrn_A          108 VGFPHIILVDPEG---KIVAKE---LRGDDLYNTVEKFV  140 (152)
T ss_dssp             CSSCEEEEECTTS---EEEEEC---CCTTHHHHHHHHHH
T ss_pred             CcCCeEEEECCCC---eEEEee---CCHHHHHHHHHHHH
Confidence            9999999995442   123333   23356666665543

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.68  E-value=9e-08  Score=79.67  Aligned_cols=90  Identities=19%  Similarity=0.389  Sum_probs=73.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCcc-------------------cHhhhhhcCcccccEE
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATV-------------------HQRIAGEFNIRGYPTI  214 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~-------------------~~~l~~~~~i~~~P~i  214 (461)
                      .+++++|.|+++||++|....+.+.++++.+. ..+.++.++++.                   ...+++.|++.++|++
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~  119 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT  119 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence            46799999999999999999999999999997 479999988766                   5689999999999998


Q ss_pred             EEEcCCCCCCcCcccccCC--CCHHHHHHHHHhhc
Q psy17502        215 KFFSPGSRSASDAQEYNGG--RTSQDIVTWALNKY  247 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~--~~~~~i~~fi~~~~  247 (461)
                      +++...+   .....+.|.  .+..++++.+.++.
T Consensus       120 ~lid~~G---~i~~~~~G~~~~~~~~~~~~~~~~~  151 (158)
T 3hdc_A          120 FIVDRKG---IIRQRVTGGIEWDAPKVVSYLKSLE  151 (158)
T ss_dssp             EEECTTS---BEEEEEESCCCTTSHHHHHHHHTTC
T ss_pred             EEEcCCC---CEEEEEeCCCccchHHHHHHHHhhc
Confidence            8886543   245567775  56778888777654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.66  E-value=6.4e-08  Score=84.70  Aligned_cols=80  Identities=15%  Similarity=0.262  Sum_probs=61.5

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec--------------------------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA--------------------------------------   74 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~--------------------------------------   74 (461)
                      +.+++++.|+++||++|+++.|.+.++.+.  + +.+..+..                                      
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~-v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~  161 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL--G-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  161 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT--T-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC--C-cEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChH
Confidence            356899999999999999999999997652  2 44332211                                      


Q ss_pred             ------CCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHH
Q psy17502         75 ------DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        75 ------~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~  119 (461)
                            +++.++++++||+++||+++ .+|+   .+.|..+.+.|.+++..
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~  208 (211)
T 1t3b_A          162 KTPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEE  208 (211)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHh
Confidence                  12356788999999999988 6774   56898899999988864

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.66  E-value=1.1e-07  Score=81.35  Aligned_cols=90  Identities=18%  Similarity=0.316  Sum_probs=71.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-e------EEEEEeCcc-cHhhhhhc--------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-V------KLGAVDATV-HQRIAGEF--------------------  206 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i------~f~~v~~~~-~~~l~~~~--------------------  206 (461)
                      .+++++|.||++||++|....+.+.++++.+++. +      .|..|+++. ..+..++|                    
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            4689999999999999999999999999998754 7      999998876 45555544                    


Q ss_pred             -----CcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        207 -----NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       207 -----~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                           ++.++|+++++.+.+   .....+.|..+.++|.++|.+..
T Consensus       138 ~~~~~~v~~~P~~~lid~~G---~i~~~~~g~~~~~~l~~~l~~ll  180 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQH---RPAAVFLREVTSKDVLDVALPLV  180 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTS---CEEEEECSCCCHHHHHHHHHHHH
T ss_pred             HhccCCCCCCCeEEEECCCC---cEEEEEcCCCCHHHHHHHHHHHH
Confidence                 678899877775442   24556789899999999987643

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.65  E-value=1.4e-07  Score=79.02  Aligned_cols=86  Identities=16%  Similarity=0.327  Sum_probs=71.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc------------------cc-----------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT------------------VH-----------------  199 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~------------------~~-----------------  199 (461)
                      .+++++|.|+++||++|....+.+.++++.+. .+.|..|+++                  ..                 
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI  114 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence            46899999999999999999999999999998 8999998876                  33                 


Q ss_pred             -----HhhhhhcCcccccEEEEEcCCCCCCcCcccccCCC-CHHHHHHHHHhh
Q psy17502        200 -----QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR-TSQDIVTWALNK  246 (461)
Q Consensus       200 -----~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~-~~~~i~~fi~~~  246 (461)
                           ..+++.|++.++|+++++...+    .... .|.. +.+.|.++|.+.
T Consensus       115 ~~~d~~~~~~~~~v~~~P~~~lid~~G----~i~~-~g~~~~~~~l~~~l~~l  162 (165)
T 3ha9_A          115 MVMDDGSLVEKFNVRSIDYIVIMDKSS----NVLY-AGTTPSLGELESVIKSV  162 (165)
T ss_dssp             EEECCSHHHHHTTCCSSSEEEEEETTC----CEEE-EEESCCHHHHHHHHHHC
T ss_pred             EEeChHHHHHHhCCCCceEEEEEcCCC----cEEE-eCCCCCHHHHHHHHHHH
Confidence                 2788899999999999996542    3322 7878 899999988753

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.64  E-value=1.2e-07  Score=77.26  Aligned_cols=86  Identities=14%  Similarity=0.325  Sum_probs=66.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHH---HHHHhcC-ceEEEEEeCcccHhh------------------------hhhc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEK---AASELEG-KVKLGAVDATVHQRI------------------------AGEF  206 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~---~a~~~~~-~i~f~~v~~~~~~~l------------------------~~~~  206 (461)
                      .+++++|.|+++||++|....+.+.+   +++.+++ .+.+..|+.+...+.                        ++.|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            46899999999999999999999888   8887764 588888877654432                        4489


Q ss_pred             CcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        207 NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       207 ~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ++.++|+++++.+.+    . ..+ +..+.++|.+++.+.
T Consensus       106 ~v~~~P~~~lid~~G----~-i~~-~~~~~~~l~~~l~~~  139 (142)
T 3ewl_A          106 DIRATPTIYLLDGRK----R-VIL-KDTSMEQLIDYLATQ  139 (142)
T ss_dssp             CCCSSSEEEEECTTC----B-EEE-CSCCHHHHHHHHHC-
T ss_pred             CCCCCCeEEEECCCC----C-EEe-cCCCHHHHHHHHHHH
Confidence            999999999996542    2 223 567899999998764

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.64  E-value=6.1e-08  Score=83.06  Aligned_cols=87  Identities=15%  Similarity=0.055  Sum_probs=65.4

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC----c-------hhhHhhcCC--------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE----E-------KSLSSSHGV--------------   86 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~----~-------~~l~~~~~i--------------   86 (461)
                      .+++++|.||++||++|+...|.+.+++++++++ +.++.|+++.    +       .++++++++              
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  127 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  127 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence            4679999999999999999999999999999764 9999998763    1       223333322              


Q ss_pred             ----------------------CCccEEEEEc-CCCCCccccCCcchhHHHHHHHH
Q psy17502         87 ----------------------TGFPTVKIFS-DKRNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        87 ----------------------~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~  119 (461)
                                            +.+|+.+++. +|+....+.|..+.+++.+.|.+
T Consensus       128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  183 (185)
T 2gs3_A          128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPH  183 (185)
T ss_dssp             BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHH
T ss_pred             hhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHH
Confidence                                  2257777775 77667778888777777776654

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.64  E-value=1.3e-07  Score=78.14  Aligned_cols=89  Identities=16%  Similarity=0.387  Sum_probs=71.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCccc-----------------------HhhhhhcCccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVH-----------------------QRIAGEFNIRG  210 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~-----------------------~~l~~~~~i~~  210 (461)
                      .+++++|.|+++||++|....+.+.++++.+.+ .+.+..|+.+.+                       ..+++.|++.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            468999999999999999999999999999976 688888887654                       33788999999


Q ss_pred             ccEEEEEcCCCCCCcCcccccCCC--CHHHHHHHHHhh
Q psy17502        211 YPTIKFFSPGSRSASDAQEYNGGR--TSQDIVTWALNK  246 (461)
Q Consensus       211 ~P~i~~~~~~~~~~~~~~~y~g~~--~~~~i~~fi~~~  246 (461)
                      +|+++++...+   .....+.|..  +.+++.++|.+.
T Consensus       107 ~P~~~lid~~G---~i~~~~~g~~~~~~~~l~~~l~~l  141 (154)
T 3kcm_A          107 VPETFVIDRHG---VILKKVVGAMEWDHPEVIAFLNNE  141 (154)
T ss_dssp             BCEEEEECTTS---BEEEEEESCCCTTSHHHHHHHHTC
T ss_pred             CCeEEEECCCC---cEEEEEcCCCccccHHHHHHHHHH
Confidence            99887776442   2445566764  677999988764

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.63  E-value=1.9e-08  Score=91.32  Aligned_cols=72  Identities=22%  Similarity=0.365  Sum_probs=59.1

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc------ccHhhhhhcCcccccEEEEEcCCCCCCcCcccccC
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT------VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG  232 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~------~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g  232 (461)
                      .+|.||++||++|+.+.|.|+++|+.+.      .++|+      ++++++++++|+++||+++  +|     +  .|.|
T Consensus       200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~------~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G-----~--~~~G  264 (291)
T 3kp9_A          200 GGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NG-----R--TYTG  264 (291)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TT-----E--EEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHcC------EEEEeecCchhhHHHHHHHcCCcccCeEEE--CC-----E--EecC
Confidence            3689999999999999999999997662      34444      2688999999999999655  55     2  3899


Q ss_pred             CCCHHHHHHHHHh
Q psy17502        233 GRTSQDIVTWALN  245 (461)
Q Consensus       233 ~~~~~~i~~fi~~  245 (461)
                      .++.+++.+|+..
T Consensus       265 ~~~~~~L~~~l~~  277 (291)
T 3kp9_A          265 VRSLEALAVASGY  277 (291)
T ss_dssp             CCCHHHHHHHTCC
T ss_pred             CCCHHHHHHHHCC
Confidence            9999999999853

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.63  E-value=4.1e-08  Score=83.97  Aligned_cols=86  Identities=15%  Similarity=0.116  Sum_probs=65.0

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c----hhhHhhc----------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E----KSLSSSH----------------   84 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~----~~l~~~~----------------   84 (461)
                      .+++++|.||++||++|+...|.+.+++++++++ +.++.|+++.       .    .+.++++                
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  125 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  125 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence            4679999999999999999999999999999764 9999998762       1    1112221                


Q ss_pred             ---------------C-----CCCccEEEEEc-CCCCCccccCCcchhHHHHHHH
Q psy17502         85 ---------------G-----VTGFPTVKIFS-DKRNPTPYQGARTADAIIDVAL  118 (461)
Q Consensus        85 ---------------~-----i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~  118 (461)
                                     +     |+.+|+++++. +|+....+.|..+.+++.++|.
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~  180 (183)
T 2obi_A          126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLP  180 (183)
T ss_dssp             SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSG
T ss_pred             hhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHH
Confidence                           3     33459888885 7777777888888877766554

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.62  E-value=1.9e-07  Score=73.76  Aligned_cols=98  Identities=11%  Similarity=0.069  Sum_probs=81.2

Q ss_pred             CCCCceEcC-ccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         14 SYSDVIKLT-TSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        14 ~~~~v~~l~-~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      +.+.+..|+ .+++.+ +++.+++++|-|+++||+.|   .+.|.++|+.+ +.+.|+.++   ++++++++++. .|++
T Consensus        19 P~~~~~~i~s~~e~e~-fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t~---~~~v~~~~~v~-~~~v   89 (124)
T 2l4c_A           19 AAQEPTWLTDVPAAME-FIAATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGIST---DSEVLTHYNIT-GNTI   89 (124)
T ss_dssp             CSCCCEECCSHHHHHH-HHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEEC---CHHHHHHTTCC-SSCE
T ss_pred             CCCcceEcCCHHHHHH-HHhcCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEEC---hHHHHHHcCCC-CCeE
Confidence            345566674 467777 78888999999999999999   67999999999 779999886   47899999999 8999


Q ss_pred             EEEcCCC-CCccccC----CcchhHHHHHHHHH
Q psy17502         93 KIFSDKR-NPTPYQG----ARTADAIIDVALEA  120 (461)
Q Consensus        93 ~~~~~g~-~~~~y~g----~~~~~~i~~~i~~~  120 (461)
                      ++|+... ....|.|    ..+.++|.+||...
T Consensus        90 vlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           90 CLFRLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             EEEETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             EEEEcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            9999643 4456886    78999999999864

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.62  E-value=7.7e-08  Score=79.75  Aligned_cols=87  Identities=17%  Similarity=0.342  Sum_probs=68.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-----------------------ccHhhhhhcCcccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-----------------------VHQRIAGEFNIRGY  211 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-----------------------~~~~l~~~~~i~~~  211 (461)
                      .+++++|.|+++||++|....+.+.++++.  +.+.|..++++                       ....+++.|++.++
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  118 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  118 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCcc
Confidence            367899999999999999999999998876  56778777643                       34467889999999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      |+++++...+   .....+.|..+.+.+.+++.+.
T Consensus       119 P~~~~id~~G---~i~~~~~g~~~~~~l~~~l~~~  150 (156)
T 1kng_A          119 PETFVVGREG---TIVYKLVGPITPDNLRSVLLPQ  150 (156)
T ss_dssp             CEEEEECTTS---BEEEEEESCCCHHHHHHTHHHH
T ss_pred             CeEEEEcCCC---CEEEEEeCCCCHHHHHHHHHHH
Confidence            9877775432   2455678988999998888664

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.60  E-value=2.5e-07  Score=76.46  Aligned_cols=87  Identities=6%  Similarity=0.089  Sum_probs=69.8

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcccHh-----------------------hhhhcCcccc
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATVHQR-----------------------IAGEFNIRGY  211 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~~~~-----------------------l~~~~~i~~~  211 (461)
                      +++++|.|+++||++|....+.+.++++.+++. +.+..|+++...+                       +++.|++.++
T Consensus        35 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~  114 (152)
T 2lrt_A           35 GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNL  114 (152)
T ss_dssp             GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSC
T ss_pred             CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccC
Confidence            578999999999999999999999999999764 8998888776543                       7889999999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      |+++++.+.+   .....+.|..+.++...-..+
T Consensus       115 P~~~lid~~G---~i~~~~~g~~~~e~~~~~~~~  145 (152)
T 2lrt_A          115 PSVFLVNRNN---ELSARGENIKDLDEAIKKLLE  145 (152)
T ss_dssp             SEEEEEETTT---EEEEETTTCSCHHHHHHHHHG
T ss_pred             ceEEEECCCC---eEEEecCCHHHHHHHHHHHHh
Confidence            9999996442   345567788777765554433

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.60  E-value=2.1e-07  Score=80.91  Aligned_cols=89  Identities=13%  Similarity=0.155  Sum_probs=71.4

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC----------------------------chhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE----------------------------EKSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~----------------------------~~~l~~   82 (461)
                      .+++++|.|| ++||++|+...|.+.++++++++ .+.++.|+++.                            ..++++
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  114 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  114 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence            3579999999 99999999999999999999965 48888888864                            346888


Q ss_pred             hcCCC------CccEEEEEc-CCCCCccccCC----cchhHHHHHHHHHH
Q psy17502         83 SHGVT------GFPTVKIFS-DKRNPTPYQGA----RTADAIIDVALEAI  121 (461)
Q Consensus        83 ~~~i~------~~P~l~~~~-~g~~~~~y~g~----~~~~~i~~~i~~~~  121 (461)
                      .|++.      ++|+++++. +|.....+.|.    ++.+++.+.+....
T Consensus       115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            99999      999999996 66555555453    45688888887654

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.59  E-value=2.2e-07  Score=75.76  Aligned_cols=84  Identities=13%  Similarity=0.189  Sum_probs=65.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHH---HHHHhcC-ceEEEEEeCcccHh------------------------hhhhc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEK---AASELEG-KVKLGAVDATVHQR------------------------IAGEF  206 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~---~a~~~~~-~i~f~~v~~~~~~~------------------------l~~~~  206 (461)
                      .+++++|.||++||++|+...+.+.+   +++.+++ .+.+..|+.+...+                        +++.|
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  109 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY  109 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence            35899999999999999999999999   8988864 68888887765432                        47789


Q ss_pred             CcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502        207 NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       207 ~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~  244 (461)
                      ++.++|+++++...+     ...+.+ .+.++|.+|+.
T Consensus       110 ~v~~~P~~~lid~~G-----~i~~~~-~~~~~l~~~l~  141 (142)
T 3eur_A          110 DLRAIPTLYLLDKNK-----TVLLKD-ATLQKVEQYLA  141 (142)
T ss_dssp             CCTTCSEEEEECTTC-----BEEEEE-ECHHHHHHHHH
T ss_pred             CCCcCCeEEEECCCC-----cEEecC-CCHHHHHHHHh
Confidence            999999999997652     222322 35788888875

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.59  E-value=1.9e-07  Score=78.30  Aligned_cols=65  Identities=14%  Similarity=0.338  Sum_probs=57.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCccc------------------------HhhhhhcCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVH------------------------QRIAGEFNI  208 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--~i~f~~v~~~~~------------------------~~l~~~~~i  208 (461)
                      .+++++|.|+++||++|+...+.+.++++.+++  .+.+..|+++..                        ..+++.|+|
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            468999999999999999999999999999975  688888776654                        678999999


Q ss_pred             ccccEEEEEcC
Q psy17502        209 RGYPTIKFFSP  219 (461)
Q Consensus       209 ~~~P~i~~~~~  219 (461)
                      .++|+++++.+
T Consensus       127 ~~~Pt~~lid~  137 (165)
T 3s9f_A          127 ESIPTLIGLNA  137 (165)
T ss_dssp             CSSSEEEEEET
T ss_pred             CCCCEEEEEeC
Confidence            99999999985

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.57  E-value=2.4e-07  Score=75.90  Aligned_cols=64  Identities=16%  Similarity=0.322  Sum_probs=56.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCcc------------------------cHhhhhhcCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATV------------------------HQRIAGEFNI  208 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~------------------------~~~l~~~~~i  208 (461)
                      .+++++|.|+++||++|+...+.+.++++.++  ..+.+..|+++.                        ...++++|++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            46799999999999999999999999999997  478888887764                        2468899999


Q ss_pred             ccccEEEEEc
Q psy17502        209 RGYPTIKFFS  218 (461)
Q Consensus       209 ~~~P~i~~~~  218 (461)
                      .++|+++++.
T Consensus       107 ~~~Pt~~lid  116 (146)
T 1o8x_A          107 ESIPTLIGVD  116 (146)
T ss_dssp             CSSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999999997

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.57  E-value=2.5e-07  Score=75.61  Aligned_cols=64  Identities=13%  Similarity=0.251  Sum_probs=56.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCcc------------------------cHhhhhhcCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATV------------------------HQRIAGEFNI  208 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~------------------------~~~l~~~~~i  208 (461)
                      .+++++|.|+++||++|+...+.+.++++.++  ..+.+..|+++.                        ...++++|++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            46799999999999999999999999999997  478888887764                        2568899999


Q ss_pred             ccccEEEEEc
Q psy17502        209 RGYPTIKFFS  218 (461)
Q Consensus       209 ~~~P~i~~~~  218 (461)
                      .++|+++++.
T Consensus       107 ~~~P~~~lid  116 (144)
T 1i5g_A          107 KSIPTLVGVE  116 (144)
T ss_dssp             CSSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999999997

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.54  E-value=3.4e-07  Score=76.92  Aligned_cols=87  Identities=20%  Similarity=0.210  Sum_probs=67.0

Q ss_pred             CCCeEEEEEECCC-CHhHHhhHHHHHHHHHHcCCceEEEEEecCC-----------------------chhhHhhcCCCC
Q psy17502         33 SDEVWIVEYYAPW-CGHCQSFKDEYMKLATALKGVVKVGAVNADE-----------------------EKSLSSSHGVTG   88 (461)
Q Consensus        33 ~~~~~lv~f~~~~-c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i~~   88 (461)
                      .+++++|.||++| |++|+...|.+.++++++ .++.++.|+.+.                       +.++++.|++..
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~  121 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYI  121 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence            4679999999999 999999999999999999 668888888763                       235677888876


Q ss_pred             ------ccEEEEEc-CCCCCccccCC-----cchhHHHHHHHHH
Q psy17502         89 ------FPTVKIFS-DKRNPTPYQGA-----RTADAIIDVALEA  120 (461)
Q Consensus        89 ------~P~l~~~~-~g~~~~~y~g~-----~~~~~i~~~i~~~  120 (461)
                            .|+.+++. +|.....+.|.     .+.+++.+.+.+.
T Consensus       122 ~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l  165 (167)
T 2jsy_A          122 KELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL  165 (167)
T ss_dssp             TTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred             ccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence                  49888886 67666666543     2346777777654

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.53  E-value=2.9e-07  Score=75.14  Aligned_cols=64  Identities=14%  Similarity=0.333  Sum_probs=56.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEEeCcc------------------------cHhhhhhcCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAVDATV------------------------HQRIAGEFNI  208 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v~~~~------------------------~~~l~~~~~i  208 (461)
                      .+++++|.|+++||++|+...+.+.++++.++  ..+.+..++++.                        ...++++|++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            46799999999999999999999999999987  468888887664                        3468899999


Q ss_pred             ccccEEEEEc
Q psy17502        209 RGYPTIKFFS  218 (461)
Q Consensus       209 ~~~P~i~~~~  218 (461)
                      .++|+++++.
T Consensus       107 ~~~Pt~~lid  116 (144)
T 1o73_A          107 ESIPTLITIN  116 (144)
T ss_dssp             CSSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999999998

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.52  E-value=3.2e-07  Score=79.63  Aligned_cols=92  Identities=12%  Similarity=0.100  Sum_probs=69.3

Q ss_pred             CCCeEEEEEECCCCHh-HHhhHHHHHHHHHHcC----CceEEEEEecCCc----------------------------hh
Q psy17502         33 SDEVWIVEYYAPWCGH-CQSFKDEYMKLATALK----GVVKVGAVNADEE----------------------------KS   79 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~-C~~~~~~~~~~a~~~~----~~v~~~~vd~~~~----------------------------~~   79 (461)
                      .+++++|.||++||++ |+...|.+.++++++.    +++.++.|+++..                            ..
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            4679999999999997 9999999999888774    3588888887631                            24


Q ss_pred             hHhhcCCC-Ccc---------------EEEEEc-CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         80 LSSSHGVT-GFP---------------TVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        80 l~~~~~i~-~~P---------------~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      +++.|||. ..|               +++++. +|.....+.|..+.+.+.+.|.+.+...
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~l  181 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY  181 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            67788887 344               556665 7777777888888888988888877543

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.51  E-value=5.6e-07  Score=73.81  Aligned_cols=91  Identities=10%  Similarity=0.119  Sum_probs=69.6

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCcc--cHhhhhhcCcccccEEEEEcCC-CCCCcC
Q psy17502        153 YNSDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDATV--HQRIAGEFNIRGYPTIKFFSPG-SRSASD  226 (461)
Q Consensus       153 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~~--~~~l~~~~~i~~~P~i~~~~~~-~~~~~~  226 (461)
                      .+.+++++|.|+++||..|+.+....   .++++.++.++.+..+|.+.  ...+.++|++.++|+++++.+. ++   .
T Consensus        39 k~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~---~  115 (153)
T 2dlx_A           39 QMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQ---K  115 (153)
T ss_dssp             HHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCC---C
T ss_pred             HHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCc---E
Confidence            35689999999999999999986544   44666666678888888764  4568899999999999999764 32   3


Q ss_pred             cccccCCCCHHHHHHHHHhhc
Q psy17502        227 AQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       227 ~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ...+.| .+.+++.+++.+..
T Consensus       116 l~~~~g-~~~~~fl~~L~~~l  135 (153)
T 2dlx_A          116 LVEWHQ-LDVSSFLDQVTGFL  135 (153)
T ss_dssp             CEEESS-CCHHHHHHHHHHHH
T ss_pred             eeecCC-CCHHHHHHHHHHHH
Confidence            334556 89999888876543

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.50  E-value=1.8e-07  Score=82.46  Aligned_cols=89  Identities=15%  Similarity=0.174  Sum_probs=70.7

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC----------------------------chhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE----------------------------EKSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~----------------------------~~~l~~   82 (461)
                      .+++++|.|| +.||++|+...|.+.++++++++ .+.++.|+++.                            ..++++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            3589999999 99999999999999999999864 48888888763                            245888


Q ss_pred             hcCCC------CccEEEEEc-CCCCCccccCC----cchhHHHHHHHHHH
Q psy17502         83 SHGVT------GFPTVKIFS-DKRNPTPYQGA----RTADAIIDVALEAI  121 (461)
Q Consensus        83 ~~~i~------~~P~l~~~~-~g~~~~~y~g~----~~~~~i~~~i~~~~  121 (461)
                      .|++.      .+|+++++. +|.....+.|.    ++.+++.+.+....
T Consensus       135 ~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          135 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            99999      999999996 66555545554    45678888777654

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.49  E-value=1.9e-07  Score=80.46  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=70.4

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC----------------------------chhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE----------------------------EKSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~----------------------------~~~l~~   82 (461)
                      .+++++|.|| ++||++|+...|.+.++++++++ .+.++.|+++.                            +.++++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            4579999999 99999999999999999999863 48888888763                            235888


Q ss_pred             hcCCC-----CccEEEEEc-CCCCCccccCC----cchhHHHHHHHHHH
Q psy17502         83 SHGVT-----GFPTVKIFS-DKRNPTPYQGA----RTADAIIDVALEAI  121 (461)
Q Consensus        83 ~~~i~-----~~P~l~~~~-~g~~~~~y~g~----~~~~~i~~~i~~~~  121 (461)
                      .|++.     .+|+++++. +|.....+.|.    ++.+++.+.+....
T Consensus       110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            99999     899999996 66555555553    35677777776654

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.49  E-value=5.4e-07  Score=77.81  Aligned_cols=90  Identities=16%  Similarity=0.172  Sum_probs=70.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc-----------------------------ccHhhhh
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT-----------------------------VHQRIAG  204 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~-----------------------------~~~~l~~  204 (461)
                      .+.+++|.|+++||++|....+.+.++++.+.+ .+.+..|+++                             .+..+++
T Consensus        45 gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (196)
T 2ywi_A           45 SDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAK  124 (196)
T ss_dssp             CSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHH
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHH
Confidence            334699999999999999999999999999976 4888888873                             3456888


Q ss_pred             hcCcccccEEEEEcCCCCCCcCccc---------ccCCCCHHHHHHHHHhhc
Q psy17502        205 EFNIRGYPTIKFFSPGSRSASDAQE---------YNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       205 ~~~i~~~P~i~~~~~~~~~~~~~~~---------y~g~~~~~~i~~fi~~~~  247 (461)
                      .|++...|+++++.+.++   ....         +.|..+.++|.++|.+..
T Consensus       125 ~~~v~~~P~~~lid~~G~---i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll  173 (196)
T 2ywi_A          125 AYDAACTPDFYIFDRDLK---CVYRGQLDDSRPNNGIPVTGESIRAALDALL  173 (196)
T ss_dssp             HHTCCEESEEEEEETTCB---EEEEECSSSCCTTTCCCCCCHHHHHHHHHHH
T ss_pred             HhCCCCCCeEEEEcCCCe---EEEccccCcccccccCccCHHHHHHHHHHHH
Confidence            999999999999965422   2222         457778888988887665

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.49  E-value=6.8e-08  Score=83.29  Aligned_cols=114  Identities=14%  Similarity=0.236  Sum_probs=67.5

Q ss_pred             chhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHH--hhhhcCCCCCCCCCCCCceeEcChhhhhhhhh-
Q psy17502         77 EKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI--RQKVKGGKSGGRKGSSKAVVELTDSNFEKLVY-  153 (461)
Q Consensus        77 ~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~--~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-  153 (461)
                      +...++.+||+++|++++  +|+..... +..+.+.+..|+.+..  .+.+...+.+..   ...  .....++..+.. 
T Consensus        39 ~~~~a~~~gi~gvP~fvi--ngk~~~~~-~~~~~~~~~~f~~~~~~l~~~L~s~~~p~~---~~~--~~~g~~y~~l~~p  110 (197)
T 1un2_A           39 QEKAAADVQLRGVPAMFV--NGKYQLNP-QGMDTSNMDVFVQQYADTVKYLSEKKGGGT---GAQ--YEDGKQYTTLEKP  110 (197)
T ss_dssp             HHHHHHHTTCCSSSEEEE--TTTEEECG-GGSCCSSHHHHHHHHHHHHHHHTC--------------CCBTTTEEECSSC
T ss_pred             HHHHHHHcCCCcCCEEEE--cceEecCc-cccccccHHHHHHHHHHHHHHHHhCccccc---ccc--cCCCCCceEccCC
Confidence            345788999999999876  54322221 2233344444444332  222221111110   000  112233433211 


Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCcc
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDATV  198 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~~  198 (461)
                      ...++++|.||+.||+||+.+.|.+   .++++.+.+++.|..++.+.
T Consensus       111 ~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~  158 (197)
T 1un2_A          111 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNF  158 (197)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSS
T ss_pred             CCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCc
Confidence            2356899999999999999999998   99999998889999988764

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.49  E-value=2.8e-07  Score=80.72  Aligned_cols=89  Identities=16%  Similarity=0.154  Sum_probs=70.0

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC----------------------------chhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE----------------------------EKSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~----------------------------~~~l~~   82 (461)
                      .+++++|.|| ++||+.|+...|.+.++++++++ .+.++.|+.+.                            ..++++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            4578999999 99999999999999999999863 58888887754                            245888


Q ss_pred             hcCCC-----CccEEEEEc-CCCCCccccCC----cchhHHHHHHHHHH
Q psy17502         83 SHGVT-----GFPTVKIFS-DKRNPTPYQGA----RTADAIIDVALEAI  121 (461)
Q Consensus        83 ~~~i~-----~~P~l~~~~-~g~~~~~y~g~----~~~~~i~~~i~~~~  121 (461)
                      +|++.     .+|+++++. +|.....+.|.    ++.+++.+.|....
T Consensus       131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99999     899999986 66555555443    45778888887654

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.48  E-value=3.8e-07  Score=78.55  Aligned_cols=88  Identities=22%  Similarity=0.269  Sum_probs=68.6

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC------------------------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE------------------------------------   76 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~------------------------------------   76 (461)
                      ..++.++.|+++||++|+.+.|.+.++.+++.+++.|..+...-                                    
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~  103 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHK  103 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            46789999999999999999999999999988788777665420                                    


Q ss_pred             -------------------------------------chhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHH
Q psy17502         77 -------------------------------------EKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        77 -------------------------------------~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~  119 (461)
                                                           +..+++++||.++|++++  +|+......|..+.+.+.+.+..
T Consensus       104 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~  181 (192)
T 3h93_A          104 KLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADY  181 (192)
T ss_dssp             CCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHH
Confidence                                                 012466789999999988  66544445588888888887776


Q ss_pred             HHh
Q psy17502        120 AIR  122 (461)
Q Consensus       120 ~~~  122 (461)
                      .+.
T Consensus       182 l~~  184 (192)
T 3h93_A          182 LIE  184 (192)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.48  E-value=4.1e-07  Score=77.13  Aligned_cols=87  Identities=14%  Similarity=0.239  Sum_probs=68.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC-----------------------cccHhhhhhcCcccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA-----------------------TVHQRIAGEFNIRGY  211 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~-----------------------~~~~~l~~~~~i~~~  211 (461)
                      .+++++|.||++||++|....+.+.++++.   .+.+..|++                       +.+..+++.|++.++
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  133 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGA  133 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCC
Confidence            367899999999999999999999999876   466666653                       334567889999999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |+++++...+   .....+.|..+.+.+.++|.+..
T Consensus       134 P~~~lid~~G---~i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          134 PETYLIDKQG---IIRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             CEEEEECTTC---BEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CeEEEECCCC---eEEEEEcCCCCHHHHHHHHHHHH
Confidence            9888886543   24556789889998888876643

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.47  E-value=5.1e-07  Score=84.92  Aligned_cols=90  Identities=13%  Similarity=0.132  Sum_probs=74.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc---------------------------ccHhhhhhc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT---------------------------VHQRIAGEF  206 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~---------------------------~~~~l~~~~  206 (461)
                      .+++++|.||++||++|....+.+.++++.+++ .+.+..|+++                           .+..+++.|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            368999999999999999999999999999976 5888888764                           234688899


Q ss_pred             CcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        207 NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       207 ~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++..+|+++++...+   .....+.|..+.+.+.++|.+..
T Consensus       161 gV~~~Pt~~lID~~G---~Iv~~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          161 RNRYWPAEYLIDATG---TVRHIKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             TCCEESEEEEECTTS---BEEEEEESBCCHHHHHHHHHHHH
T ss_pred             CCCccCEEEEEeCCC---eEEEEEcCCCCHHHHHHHHHHHH
Confidence            999999999995442   34556788888999998887654

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.47  E-value=9.6e-08  Score=73.44  Aligned_cols=68  Identities=19%  Similarity=0.278  Sum_probs=48.9

Q ss_pred             chhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-------hhhHhhcCCCCccEEEEEcC
Q psy17502         25 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-------KSLSSSHGVTGFPTVKIFSD   97 (461)
Q Consensus        25 ~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-------~~l~~~~~i~~~P~l~~~~~   97 (461)
                      .+.+ +++.+.  ++.|+++||++|+.+.+.+.+....+.+   +..+|++.+       ..+++.+|+.++|++++  +
T Consensus         4 ~~~~-~i~~~~--v~~f~~~~C~~C~~~~~~L~~~~~~~~~---~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~--~   75 (105)
T 1kte_A            4 FVNS-KIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKEGL---LEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--G   75 (105)
T ss_dssp             HHHH-HCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCTTS---EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--T
T ss_pred             HHHh-hcccCC--EEEEEcCCCHhHHHHHHHHHHcCCCCCc---cEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEE--C
Confidence            3455 565554  6779999999999999999876544322   555677655       35888999999999843  5


Q ss_pred             CCC
Q psy17502         98 KRN  100 (461)
Q Consensus        98 g~~  100 (461)
                      |+.
T Consensus        76 g~~   78 (105)
T 1kte_A           76 KEC   78 (105)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            543

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.46  E-value=6e-07  Score=76.97  Aligned_cols=90  Identities=17%  Similarity=0.156  Sum_probs=69.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-----------------------------ccHhhhhh
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-----------------------------VHQRIAGE  205 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-----------------------------~~~~l~~~  205 (461)
                      .+++++|.|+++||++|....+.+.++++.+.+.+.+..|+++                             .+..+++.
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            3589999999999999999999999999999766888888762                             34568889


Q ss_pred             cCcccccEEEEEcCCCCCCcCccc--------ccCCCCHHHHHHHHHhhc
Q psy17502        206 FNIRGYPTIKFFSPGSRSASDAQE--------YNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       206 ~~i~~~P~i~~~~~~~~~~~~~~~--------y~g~~~~~~i~~fi~~~~  247 (461)
                      |++.+.|+++++...++   ....        +.|..+.++|.+.|.+..
T Consensus       112 ~~v~~~P~~~lid~~G~---i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll  158 (188)
T 2cvb_A          112 YRALRTPEVFLFDERRL---LRYHGRVNDNPKDPSKVQSHDLEAAIEALL  158 (188)
T ss_dssp             TTCCEESEEEEECTTCB---EEEEECSSSCTTCGGGCCCCHHHHHHHHHH
T ss_pred             cCCCCCCeEEEECCCCc---EEEEEecCCccccccccCHHHHHHHHHHHH
Confidence            99999999999965421   1111        223346778888887665

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.46  E-value=1.4e-06  Score=71.61  Aligned_cols=86  Identities=13%  Similarity=0.234  Sum_probs=67.1

Q ss_pred             CCCeEEEEEeCCCChh--hhhhhHHHHHHHHHh-cC-ceEEEEEeCcccH-------------------------hhhhh
Q psy17502        155 SDDIWLVEFFAPWCGH--CKNLEPHWEKAASEL-EG-KVKLGAVDATVHQ-------------------------RIAGE  205 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~--c~~~~~~~~~~a~~~-~~-~i~f~~v~~~~~~-------------------------~l~~~  205 (461)
                      .+++++|.|+++||++  |....+.+.++++.+ ++ .+.+..|+.+...                         .+++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            3579999999999999  999999999999999 65 4888888776543                         68889


Q ss_pred             cCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        206 FNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       206 ~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      |++.++|+++++.+.++   ....+   .+.+.+.+.|.+.
T Consensus       112 ~~v~~~P~~~lid~~G~---i~~~~---~~~~~l~~~l~~l  146 (150)
T 3fw2_A          112 YSIYKIPANILLSSDGK---ILAKN---LRGEELKKKIENI  146 (150)
T ss_dssp             TTCCSSSEEEEECTTSB---EEEES---CCHHHHHHHHHHH
T ss_pred             cCCCccCeEEEECCCCE---EEEcc---CCHHHHHHHHHHH
Confidence            99999999999965421   22222   2677777777553

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.46  E-value=9.5e-07  Score=76.25  Aligned_cols=43  Identities=19%  Similarity=0.316  Sum_probs=39.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD   75 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~   75 (461)
                      ..+++++.|+++||++|+.+.|.+.++.+++.+++.|..++..
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            4678999999999999999999999999999878888888875

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.44  E-value=4.3e-07  Score=64.84  Aligned_cols=68  Identities=19%  Similarity=0.354  Sum_probs=51.7

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHh---hcCCCCccEEEEEcCCCCCccccCCcchhHHH
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSS---SHGVTGFPTVKIFSDKRNPTPYQGARTADAII  114 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~  114 (461)
                      ++.|+++||++|+++.+.+++.      .+.+..+|.+.++++.+   ++++..+|++++  +|+.   ..| .+.+.+.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g-~~~~~l~   70 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSG-FRPERIK   70 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EES-CCHHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---EcC-CCHHHHH
Confidence            6789999999999999888754      26788899988776665   899999999984  5532   333 4566776


Q ss_pred             HHH
Q psy17502        115 DVA  117 (461)
Q Consensus       115 ~~i  117 (461)
                      +++
T Consensus        71 ~~l   73 (75)
T 1r7h_A           71 QLQ   73 (75)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.43  E-value=3.6e-07  Score=69.42  Aligned_cols=80  Identities=13%  Similarity=0.066  Sum_probs=62.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc--ccHhhhhhcCcccccEEEEEcCCCCCCcCcccccC
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT--VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG  232 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~--~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g  232 (461)
                      .+.+.++.|+++||++|+.+.+.+.+++    ..+.|..+|++  .+++++.+|+ .+.|+++  .+|     ... ..+
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~----~~i~~~~vdi~~~~~~el~~~~g-~~vP~l~--~~g-----~~~-~~~   80 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYK----DRFILQEVDITLPENSTWYERYK-FDIPVFH--LNG-----QFL-MMH   80 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTS----SSSEEEEEETTSSTTHHHHHHSS-SSCSEEE--ESS-----SEE-EES
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhh----hCCeEEEEECCCcchHHHHHHHC-CCCCEEE--ECC-----EEE-Eec
Confidence            3456888999999999999999887654    34899999998  7788999999 9999863  454     222 345


Q ss_pred             CCCHHHHHHHHHhhc
Q psy17502        233 GRTSQDIVTWALNKY  247 (461)
Q Consensus       233 ~~~~~~i~~fi~~~~  247 (461)
                      ..+.+.|.+++.+..
T Consensus        81 g~~~~~l~~~l~~~~   95 (100)
T 1wjk_A           81 RVNTSKLEKQLRKLS   95 (100)
T ss_dssp             SCCHHHHHHHHHSSS
T ss_pred             CCCHHHHHHHHHHHH
Confidence            688899999997643

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.42  E-value=4.4e-07  Score=81.08  Aligned_cols=85  Identities=14%  Similarity=0.273  Sum_probs=64.0

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC--------------------------------------
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD--------------------------------------   75 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~--------------------------------------   75 (461)
                      .+.+++.|+++||++|+++.+.+.++.+.  +++.+..+...                                      
T Consensus        97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~  174 (241)
T 1v58_A           97 APVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  174 (241)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcc
Confidence            35789999999999999999999887764  45666544331                                      


Q ss_pred             ------------CchhhHhhcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         76 ------------EEKSLSSSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        76 ------------~~~~l~~~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                                  .+.++++++||+++|++++.. +| ......|..+.+.+.+++.+..
T Consensus       175 ~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G-~~~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          175 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKEN-TLQQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTT-EEEEEESSCCHHHHHHHTTC--
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHHHHHH
Confidence                        123477889999999999986 35 3346789999999988886654

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.42  E-value=3.8e-07  Score=80.52  Aligned_cols=87  Identities=13%  Similarity=0.169  Sum_probs=67.7

Q ss_pred             CCCeEEEEEEC-CCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCc----------------------------hhhHh
Q psy17502         33 SDEVWIVEYYA-PWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEE----------------------------KSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~~-~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~----------------------------~~l~~   82 (461)
                      .+++++|.||+ .||++|+...|.+.+++++++++ +.++.|+++..                            ..+++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            46799999996 99999999999999999999764 88888888742                            24778


Q ss_pred             hcCCC------CccEEEEEc-CCCCCccccCCc----chhHHHHHHHH
Q psy17502         83 SHGVT------GFPTVKIFS-DKRNPTPYQGAR----TADAIIDVALE  119 (461)
Q Consensus        83 ~~~i~------~~P~l~~~~-~g~~~~~y~g~~----~~~~i~~~i~~  119 (461)
                      .|++.      .+|+.+++. +|.....+.|..    ..+++++.+..
T Consensus       148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            89998      899999996 665555555543    34566666654

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.41  E-value=1.5e-06  Score=74.32  Aligned_cols=90  Identities=20%  Similarity=0.399  Sum_probs=70.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCccc-----HhhhhhcCcc-------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELE-GKVKLGAVDATVH-----QRIAGEFNIR-------------------  209 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~~-----~~l~~~~~i~-------------------  209 (461)
                      .+++++|.|+++||++|....+.+.++++.+. ..+.+..|+++..     ..+++++++.                   
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            46799999999999999999999999999997 4688888877654     4566677764                   


Q ss_pred             ----cccEEEEEcCCCCCCcCcccccCCC--CHHHHHHHHHhhc
Q psy17502        210 ----GYPTIKFFSPGSRSASDAQEYNGGR--TSQDIVTWALNKY  247 (461)
Q Consensus       210 ----~~P~i~~~~~~~~~~~~~~~y~g~~--~~~~i~~fi~~~~  247 (461)
                          ++|+++++...+   .....+.|..  +.+++.++|.+..
T Consensus       139 ~~~~~~P~~~lid~~G---~i~~~~~g~~~~~~~~l~~~l~~ll  179 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQG---CEIATIAGPAEWASEDALKLIRAAT  179 (186)
T ss_dssp             TCCSSSSEEEEECTTS---BEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCC---CEEEEEecCCccCHHHHHHHHHHHh
Confidence                789999996542   2445677765  4788888887654

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.40  E-value=6.4e-07  Score=75.86  Aligned_cols=86  Identities=13%  Similarity=0.067  Sum_probs=65.2

Q ss_pred             CCCeEEEEEECCC-CHhHHhhHHHHHHHHHHcCCceEEEEEecCC----------------------chhhHhhcCCCCc
Q psy17502         33 SDEVWIVEYYAPW-CGHCQSFKDEYMKLATALKGVVKVGAVNADE----------------------EKSLSSSHGVTGF   89 (461)
Q Consensus        33 ~~~~~lv~f~~~~-c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~----------------------~~~l~~~~~i~~~   89 (461)
                      .+++++|.||+.| |++|+...|.+.+++++  ..+.++.|+.+.                      +..+++.|++...
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  120 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA  120 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccc
Confidence            4678999999999 99999999999999988  558888888762                      2458888999877


Q ss_pred             ---------cEEEEEc-CCCCCccccC--CcchhHHHHHHHHH
Q psy17502         90 ---------PTVKIFS-DKRNPTPYQG--ARTADAIIDVALEA  120 (461)
Q Consensus        90 ---------P~l~~~~-~g~~~~~y~g--~~~~~~i~~~i~~~  120 (461)
                               |+.+++. +|+....+.|  .....++.+++...
T Consensus       121 ~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l  163 (175)
T 1xvq_A          121 DGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAAL  163 (175)
T ss_dssp             SSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHH
T ss_pred             ccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHH
Confidence                     8888876 6766666643  33444666666544

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.40  E-value=2e-06  Score=75.65  Aligned_cols=86  Identities=17%  Similarity=0.268  Sum_probs=67.6

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCc-----------------------------ccHhhhhhc
Q psy17502        157 DIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDAT-----------------------------VHQRIAGEF  206 (461)
Q Consensus       157 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~-----------------------------~~~~l~~~~  206 (461)
                      .+++|.|+++||+.|....+.+.++++.+++. +.|..|+++                             ....+++.|
T Consensus        60 ~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~  139 (218)
T 3u5r_E           60 PALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAY  139 (218)
T ss_dssp             SEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHH
T ss_pred             CeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHc
Confidence            36999999999999999999999999999764 888888873                             345788999


Q ss_pred             CcccccEEEEEcCCCCCCcCcccccC-----------CCCHHHHHHHHHhhc
Q psy17502        207 NIRGYPTIKFFSPGSRSASDAQEYNG-----------GRTSQDIVTWALNKY  247 (461)
Q Consensus       207 ~i~~~P~i~~~~~~~~~~~~~~~y~g-----------~~~~~~i~~fi~~~~  247 (461)
                      ++...|+++++...+     ...|.|           ..+.++|.+.|.+..
T Consensus       140 ~v~~~P~~~liD~~G-----~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll  186 (218)
T 3u5r_E          140 GAACTPDFFLYDRER-----RLVYHGQFDDARPGNGKDVTGADLRAAVDAVL  186 (218)
T ss_dssp             TCCEESEEEEECTTC-----BEEEEECSSSCCTTSCCCCCCHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCC-----cEEEeccccccccccccccCHHHHHHHHHHHH
Confidence            999999999996542     223433           345677887776654

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.38  E-value=1.1e-06  Score=73.43  Aligned_cols=75  Identities=11%  Similarity=0.147  Sum_probs=59.1

Q ss_pred             CCCeEEEEEEC-CCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCc---------------------hhhHhhcCCCC-
Q psy17502         33 SDEVWIVEYYA-PWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEE---------------------KSLSSSHGVTG-   88 (461)
Q Consensus        33 ~~~~~lv~f~~-~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~---------------------~~l~~~~~i~~-   88 (461)
                      .+++++|.||+ .||++|....|.+.+++++++++ +.++.|+++..                     .++++.|++.. 
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  113 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKE  113 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccc
Confidence            34589999998 99999999999999999998753 88888887632                     24777888877 


Q ss_pred             -----------ccEEEEEc-CCCCCccccCC
Q psy17502         89 -----------FPTVKIFS-DKRNPTPYQGA  107 (461)
Q Consensus        89 -----------~P~l~~~~-~g~~~~~y~g~  107 (461)
                                 .|+.+++. +|.....+.|.
T Consensus       114 ~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~  144 (163)
T 3gkn_A          114 KNMYGKQVLGIERSTFLLSPEGQVVQAWRKV  144 (163)
T ss_dssp             EEETTEEEEEECCEEEEECTTSCEEEEECSC
T ss_pred             cccccccccCcceEEEEECCCCeEEEEEcCC
Confidence                       89999997 66555556443

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.38  E-value=5.4e-07  Score=76.12  Aligned_cols=89  Identities=20%  Similarity=0.349  Sum_probs=66.5

Q ss_pred             CCCeEEEEEECCCCH-hHHhhHHHHHHHHHHcCC---ceEEEEEecCC---ch----hh---------------------
Q psy17502         33 SDEVWIVEYYAPWCG-HCQSFKDEYMKLATALKG---VVKVGAVNADE---EK----SL---------------------   80 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~-~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~---~~----~l---------------------   80 (461)
                      .+++++|.||++||+ +|+...|.+.++++++++   ++.++.|+++.   .+    ..                     
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            467899999999999 999999999999998864   38999998862   11    11                     


Q ss_pred             Hhh----------------cCCCCccEEEEEc-CCCCCccccCCc--chhHHHHHHHHHH
Q psy17502         81 SSS----------------HGVTGFPTVKIFS-DKRNPTPYQGAR--TADAIIDVALEAI  121 (461)
Q Consensus        81 ~~~----------------~~i~~~P~l~~~~-~g~~~~~y~g~~--~~~~i~~~i~~~~  121 (461)
                      .+.                +++.+.|+++++. +|.....+.|..  +.+++.+.|.+.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll  171 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAS  171 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence            122                2356789877776 776667778876  4678888887654

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.36  E-value=1.5e-07  Score=68.34  Aligned_cols=58  Identities=14%  Similarity=0.187  Sum_probs=47.0

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-ccHhhhhhcCcccccEEEE
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-VHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-~~~~l~~~~~i~~~P~i~~  216 (461)
                      .++.|+++||++|+.+.+.+.++++.+...+.+..+|.+ ...++++++|+.+.|++++
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i   61 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI   61 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE
Confidence            367899999999999999999988766445666666544 4677889999999999987

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.36  E-value=3.5e-07  Score=66.49  Aligned_cols=68  Identities=18%  Similarity=0.264  Sum_probs=48.9

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHh---hcCCCCccEEEEEcCCCCCccccCCcchhHHH
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSS---SHGVTGFPTVKIFSDKRNPTPYQGARTADAII  114 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~  114 (461)
                      ++.|+++||++|+.+.+.+++.      .+.+..+|+++++++.+   ++++.++|+++  .+|+.   . |..+.+.|.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g~~---~-~g~~~~~l~   70 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGDLS---W-SGFRPDMIN   70 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETTEE---E-ESCCHHHHG
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECCEE---E-ecCCHHHHH
Confidence            6789999999999999888763      26788899998766554   58999999984  35532   2 334455555


Q ss_pred             HHH
Q psy17502        115 DVA  117 (461)
Q Consensus       115 ~~i  117 (461)
                      +++
T Consensus        71 ~~l   73 (81)
T 1h75_A           71 RLH   73 (81)
T ss_dssp             GGS
T ss_pred             HHH
Confidence            444

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.34  E-value=1.4e-07  Score=74.02  Aligned_cols=79  Identities=14%  Similarity=0.246  Sum_probs=54.2

Q ss_pred             CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc-----HhhhhhcCcccccEEEEEcCCCCCCcCccccc
Q psy17502        157 DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH-----QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYN  231 (461)
Q Consensus       157 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~-----~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~  231 (461)
                      .++++ |+++||++|+.+.+.+.+++.    .+.+..++.+..     ..+++++++.++|++  |.+|    .....+.
T Consensus        20 ~~vv~-f~a~~C~~C~~~~~~l~~~~~----~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g----~~v~~~~   88 (116)
T 2e7p_A           20 APVVV-FSKTYCGYCNRVKQLLTQVGA----SYKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGG----KQIGGCD   88 (116)
T ss_dssp             SSEEE-EECTTCHHHHHHHHHHHHHTC----CCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETT----EEEECHH
T ss_pred             CCEEE-EECCCChhHHHHHHHHHHcCC----CeEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECC----EEECChH
Confidence            45555 999999999999999888753    345555554443     468899999999999  4455    2333444


Q ss_pred             CCC---CHHHHHHHHHhh
Q psy17502        232 GGR---TSQDIVTWALNK  246 (461)
Q Consensus       232 g~~---~~~~i~~fi~~~  246 (461)
                      |..   +.+.|.+|+.+.
T Consensus        89 ~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           89 TVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHhCChHHHHHHHc
Confidence            432   445677777654

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=3e-07  Score=73.54  Aligned_cols=88  Identities=13%  Similarity=0.214  Sum_probs=57.4

Q ss_pred             CccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc---h----hhHhhcCCCCccEEEE
Q psy17502         22 TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE---K----SLSSSHGVTGFPTVKI   94 (461)
Q Consensus        22 ~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~---~----~l~~~~~i~~~P~l~~   94 (461)
                      ..+.+.+ ++..+.  ++.|+++||++|+.+.+.+.++.      +.+..+|++..   +    ++++.+++..+|++++
T Consensus        16 ~~~~~~~-~i~~~~--vvvf~~~~Cp~C~~~~~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i   86 (130)
T 2cq9_A           16 PVNQIQE-TISDNC--VVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV   86 (130)
T ss_dssp             HHHHHHH-HHHHSS--EEEEECSSCSHHHHHHHHHHHHT------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEE
T ss_pred             HHHHHHH-HHcCCc--EEEEEcCCChHHHHHHHHHHHcC------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEE
Confidence            3455565 555554  44499999999999999888763      34566777655   3    3788999999999853


Q ss_pred             EcCCCCCccc---cCCcchhHHHHHHHHH
Q psy17502         95 FSDKRNPTPY---QGARTADAIIDVALEA  120 (461)
Q Consensus        95 ~~~g~~~~~y---~g~~~~~~i~~~i~~~  120 (461)
                        +|+.+..+   .+......|.+++...
T Consensus        87 --~G~~igg~~~l~~~~~~~~L~~~L~~~  113 (130)
T 2cq9_A           87 --NGTFIGGATDTHRLHKEGKLLPLVHQC  113 (130)
T ss_dssp             --TTEEEEEHHHHHHHHHHTSSHHHHHHH
T ss_pred             --CCEEEcChHHHHHHHHcCcHHHHHHHc
Confidence              55433222   1223444566666553

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.32  E-value=2.3e-06  Score=71.08  Aligned_cols=87  Identities=14%  Similarity=0.079  Sum_probs=62.5

Q ss_pred             CCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC---------------------chhhHhhcCCCCcc-
Q psy17502         34 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVGAVNADE---------------------EKSLSSSHGVTGFP-   90 (461)
Q Consensus        34 ~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~~~P-   90 (461)
                      +++++|.|| +.||++|+...|.+.+++++++++-.++.|+++.                     +.++++.||+...| 
T Consensus        35 ~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~  114 (159)
T 2a4v_A           35 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPL  114 (159)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSS
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccc
Confidence            347888887 9999999999999999999987422666666542                     23578889999998 


Q ss_pred             ------EEEEEcCCCCCccccCCcch---hHHHHHHHHHH
Q psy17502         91 ------TVKIFSDKRNPTPYQGARTA---DAIIDVALEAI  121 (461)
Q Consensus        91 ------~l~~~~~g~~~~~y~g~~~~---~~i~~~i~~~~  121 (461)
                            ++++ .+|.....+.|....   +.+.+.+.+.+
T Consensus       115 ~g~~~~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l  153 (159)
T 2a4v_A          115 SGSIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVA  153 (159)
T ss_dssp             SCBCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred             CCccceEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHH
Confidence                  5666 888766777776544   34444444443

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.32  E-value=1.8e-07  Score=73.10  Aligned_cols=65  Identities=17%  Similarity=0.210  Sum_probs=47.1

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-------hhHhhcCCCCccEEEEEcCCCCC
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-------SLSSSHGVTGFPTVKIFSDKRNP  101 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~P~l~~~~~g~~~  101 (461)
                      +++.+  .++.|+++||++|+++.+.+.+..... ++  +..+|++.++       ++.+++|+.++|++++  +|+.+
T Consensus        15 ~i~~~--~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i   86 (114)
T 2hze_A           15 RLANN--KVTIFVKYTCPFCRNALDILNKFSFKR-GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GKTSI   86 (114)
T ss_dssp             TCCTT--CEEEEECTTCHHHHHHHHHHTTSCBCT-TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TTEEE
T ss_pred             HhccC--CEEEEEeCCChhHHHHHHHHHHcCCCc-Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence            44444  477899999999999998876543221 11  7788888764       7889999999999854  56443

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.31  E-value=2.6e-06  Score=69.33  Aligned_cols=83  Identities=7%  Similarity=0.100  Sum_probs=62.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCccc--------------------------HhhhhhcC
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVH--------------------------QRIAGEFN  207 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~--------------------------~~l~~~~~  207 (461)
                      .+++++|.|+++||++|....+.+.++++.+++ .+.+..|+.+.+                          ..+++.|+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            457999999999999999999999999999874 588887766532                          24678899


Q ss_pred             cccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        208 IRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       208 i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      +.+.|+.+++.+.+    . ..+. ....+++.+.+
T Consensus       111 v~~~P~~~lid~~G----~-i~~~-~~~~~~l~~~l  140 (143)
T 4fo5_A          111 LRKGFKNFLINDEG----V-IIAA-NVTPEKLTEIL  140 (143)
T ss_dssp             GGGCCCEEEECTTS----B-EEEE-SCCHHHHHHHH
T ss_pred             CCCCCcEEEECCCC----E-EEEc-cCCHHHHHHHH
Confidence            99999999987542    2 1222 23456666655

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.30  E-value=3.7e-06  Score=70.61  Aligned_cols=90  Identities=13%  Similarity=0.173  Sum_probs=70.0

Q ss_pred             CCCeEEEEEeCCCChh-hhhhhHHHHHHHHHhc-----CceEEEEEeCccc----------------------------H
Q psy17502        155 SDDIWLVEFFAPWCGH-CKNLEPHWEKAASELE-----GKVKLGAVDATVH----------------------------Q  200 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~-c~~~~~~~~~~a~~~~-----~~i~f~~v~~~~~----------------------------~  200 (461)
                      .+++++|.|+++||++ |....+.+.++++.+.     ..+.+..|+++..                            .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3579999999999998 9999999999999885     4788888876521                            2


Q ss_pred             hhhhhcCccccc---------------EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        201 RIAGEFNIRGYP---------------TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       201 ~l~~~~~i~~~P---------------~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      .+++.|++...|               +++++.+.+   .....+.|..+.+.|.+.|.+..
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G---~i~~~~~g~~~~~~l~~~l~~ll  163 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDG---LFTDYYGRSRSAEQISDSVRRHM  163 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTS---CEEEEEESSCCHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCC---eEEEEECCCCCHHHHHHHHHHHH
Confidence            577889998877               777775442   24556788889999988887643

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.27  E-value=3.2e-06  Score=70.47  Aligned_cols=90  Identities=10%  Similarity=0.179  Sum_probs=69.9

Q ss_pred             CCCeEEEEEeCCCChh-hhhhhHHHHHHHHHhcC-----ceEEEEEeCccc----------------------------H
Q psy17502        155 SDDIWLVEFFAPWCGH-CKNLEPHWEKAASELEG-----KVKLGAVDATVH----------------------------Q  200 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~-c~~~~~~~~~~a~~~~~-----~i~f~~v~~~~~----------------------------~  200 (461)
                      .+++++|.|+++||++ |....+.+.++++.+++     .+.+..|+++..                            .
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3679999999999998 99999999999998863     788877776431                            1


Q ss_pred             hhhhhcCccccc---------------EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        201 RIAGEFNIRGYP---------------TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       201 ~l~~~~~i~~~P---------------~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      .+++.|++...|               +++++.+.+   .....+.|..+.++|.+.|.+..
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G---~i~~~~~g~~~~~~l~~~l~~ll  160 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDG---EFLDYFGQNKRKGEIAASIATHM  160 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTS---CEEEEEETTCCHHHHHHHHHHHH
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCC---eEEEEeCCCCCHHHHHHHHHHHH
Confidence            377889998888               677765442   24556788889999998887643

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.26  E-value=4.4e-06  Score=72.92  Aligned_cols=42  Identities=19%  Similarity=0.180  Sum_probs=37.3

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNAD   75 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~   75 (461)
                      .++++||.|||+||++|+ ..|.+++++++++++ +.++.|+|+
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            567999999999999999 899999999999754 888889875

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.26  E-value=2.2e-06  Score=62.75  Aligned_cols=76  Identities=18%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH----hhhhhcC--cccccEEEEEcCCCCCCcCcccccC
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ----RIAGEFN--IRGYPTIKFFSPGSRSASDAQEYNG  232 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~----~l~~~~~--i~~~P~i~~~~~~~~~~~~~~~y~g  232 (461)
                      .++.|+++||++|+.+.+.+.+++..+. .+.+..+|++.+.    +++++++  +.++|+++  .+|     ..  ..|
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~--~~g-----~~--i~~   71 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERD-DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF--VDQ-----QH--IGG   71 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHS-SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEE--ETT-----EE--EES
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCC-CceEEEEecccChHHHHHHHHHhCCCCceeCeEE--ECC-----EE--EEC
Confidence            3678999999999999999999998765 5899999886653    7888898  89999984  344     11  112


Q ss_pred             CCCHHHHHHHHHhhc
Q psy17502        233 GRTSQDIVTWALNKY  247 (461)
Q Consensus       233 ~~~~~~i~~fi~~~~  247 (461)
                         .++|.+++.+.+
T Consensus        72 ---~~~l~~~~~~~~   83 (85)
T 1ego_A           72 ---YTDFAAWVKENL   83 (85)
T ss_dssp             ---SHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhc
Confidence               268888887653

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.23  E-value=8.5e-07  Score=72.28  Aligned_cols=85  Identities=13%  Similarity=0.219  Sum_probs=55.2

Q ss_pred             cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc---h----hhHhhcCCCCccEEEEEc
Q psy17502         24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE---K----SLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~---~----~l~~~~~i~~~P~l~~~~   96 (461)
                      +.+.+ ++..+.  ++.|+++||++|+.+.+.+.++.      +.+..+|++..   +    ++++++|+.++|++++  
T Consensus        40 ~~~~~-~i~~~~--Vvvf~~~~Cp~C~~~k~~L~~~~------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~ifi--  108 (146)
T 2ht9_A           40 NQIQE-TISDNC--VVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV--  108 (146)
T ss_dssp             HHHHH-HHHHCS--EEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEEE--
T ss_pred             HHHHH-HhcCCC--EEEEECCCChhHHHHHHHHHHcC------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEEE--
Confidence            44555 555554  44499999999999999888763      34556777654   3    3788999999999853  


Q ss_pred             CCCCCccc---cCCcchhHHHHHHHH
Q psy17502         97 DKRNPTPY---QGARTADAIIDVALE  119 (461)
Q Consensus        97 ~g~~~~~y---~g~~~~~~i~~~i~~  119 (461)
                      +|+.+..+   .+......|.+++..
T Consensus       109 ~G~~igG~d~l~~l~~~g~L~~~L~~  134 (146)
T 2ht9_A          109 NGTFIGGATDTHRLHKEGKLLPLVHQ  134 (146)
T ss_dssp             TTEEEESHHHHHHHHHTTCHHHHHHH
T ss_pred             CCEEEeCchHHHHHHHcChHHHHHHH
Confidence            66433222   122334455555554

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.22  E-value=6.5e-06  Score=68.48  Aligned_cols=86  Identities=9%  Similarity=0.052  Sum_probs=64.7

Q ss_pred             CCe-EEEEEe-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc---------------------ccHhhhhhcCccc-
Q psy17502        156 DDI-WLVEFF-APWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT---------------------VHQRIAGEFNIRG-  210 (461)
Q Consensus       156 ~~~-~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~---------------------~~~~l~~~~~i~~-  210 (461)
                      ++. ++|.|+ ++||++|....+.+.++++.+++ .+.+..|+.+                     ....+++.|++.+ 
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF  107 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence            454 999999 99999999999999999999976 4888888765                     3457888999998 


Q ss_pred             ---ccEEEEEcCCCCCCcCcccccCCC----CHHHHHHHHH
Q psy17502        211 ---YPTIKFFSPGSRSASDAQEYNGGR----TSQDIVTWAL  244 (461)
Q Consensus       211 ---~P~i~~~~~~~~~~~~~~~y~g~~----~~~~i~~fi~  244 (461)
                         .|+.+++.+.+   .....+.|..    ..+++.+.+.
T Consensus       108 ~~~~P~~~lid~~G---~i~~~~~g~~~~~~~~~~il~~l~  145 (161)
T 3drn_A          108 ILPARITFVIDKKG---IIRHIYNSQMNPANHVNEALKALK  145 (161)
T ss_dssp             SSCCCEEEEECTTS---BEEEEEECSSCTTHHHHHHHHHHH
T ss_pred             CcccceEEEECCCC---EEEEEEecCCCCCcCHHHHHHHHH
Confidence               99999997543   2444566632    3345555443

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.17  E-value=6.8e-06  Score=71.38  Aligned_cols=89  Identities=11%  Similarity=-0.016  Sum_probs=65.9

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC-------c----hhhHh------hcCCC-------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE-------E----KSLSS------SHGVT-------   87 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~-------~----~~l~~------~~~i~-------   87 (461)
                      .++++||.||++||++| ...|.+.+++++++++ +.++.|+++.       .    .+.++      ++++.       
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fp~l~d~  115 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKG  115 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCccceeeeEe
Confidence            46799999999999999 6789999999999764 8888888752       1    23444      55432       


Q ss_pred             ------------------------------------------CccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         88 ------------------------------------------GFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        88 ------------------------------------------~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                                                                ..|+.+++. +|....+|.|..+.+++...|.+.+.
T Consensus       116 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~~~~~l~~~I~~ll~  193 (207)
T 2r37_A          116 DVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMR  193 (207)
T ss_dssp             CSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             ccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                                      115666665 67666778888888888888877654

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.17  E-value=2.9e-06  Score=71.37  Aligned_cols=87  Identities=16%  Similarity=0.168  Sum_probs=67.2

Q ss_pred             CCCeEEEEEeCCCChh-hhhhhHHHHHHHHHhcC----ceEEEEEeCccc----------------------------Hh
Q psy17502        155 SDDIWLVEFFAPWCGH-CKNLEPHWEKAASELEG----KVKLGAVDATVH----------------------------QR  201 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~-c~~~~~~~~~~a~~~~~----~i~f~~v~~~~~----------------------------~~  201 (461)
                      .+++++|.|+++||++ |....+.+.++++.+.+    .+.+..|+++..                            ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            4679999999999997 99999999999998873    688888886532                            24


Q ss_pred             hhhhcC---------------cccccEEEEEcCCCCCCcCcccccCCC--CHHHHHHHHHh
Q psy17502        202 IAGEFN---------------IRGYPTIKFFSPGSRSASDAQEYNGGR--TSQDIVTWALN  245 (461)
Q Consensus       202 l~~~~~---------------i~~~P~i~~~~~~~~~~~~~~~y~g~~--~~~~i~~fi~~  245 (461)
                      +++.|+               +...|+++++. .+   .....+.|..  +.+.|.++|.+
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G---~i~~~~~g~~~~~~~~l~~~l~~  170 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EG---RLVLLYSPDKAEATDRVVADLQA  170 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TT---EEEEEECHHHHTCHHHHHHHHHH
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CC---EEEEEECCCCCCCHHHHHHHHHH
Confidence            555555               45679999999 53   2455667776  88999888865

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.17  E-value=1.6e-05  Score=64.86  Aligned_cols=108  Identities=12%  Similarity=0.188  Sum_probs=82.3

Q ss_pred             CceEcCccchhHHHhcCCCeEEEE-EECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec--CCchhhHhhcCCCC--ccE
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVE-YYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA--DEEKSLSSSHGVTG--FPT   91 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~-f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~--~~~~~l~~~~~i~~--~P~   91 (461)
                      -|.++|.+|+.+ +..+.-+..++ |....-..-..+.+.+.++|+++++++.|+.||.  ++...+.+.||+..  .|+
T Consensus        15 LV~e~t~en~~~-~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~   93 (147)
T 3bj5_A           15 LVIEFTEQTAPK-IFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKEECPA   93 (147)
T ss_dssp             CEEECCTTTHHH-HHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTCCGGGCSE
T ss_pred             eeEEeccccHHH-HhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCCCcccCCE
Confidence            488999999998 66555554444 5544444567789999999999999999999998  55567889999986  999


Q ss_pred             EEEEcC-C-CCCcccc-CCcchhHHHHHHHHHHhhhh
Q psy17502         92 VKIFSD-K-RNPTPYQ-GARTADAIIDVALEAIRQKV  125 (461)
Q Consensus        92 l~~~~~-g-~~~~~y~-g~~~~~~i~~~i~~~~~~~~  125 (461)
                      +.++.. + .....+. +..+.+.|.+|+...+...+
T Consensus        94 v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL  130 (147)
T 3bj5_A           94 VRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKI  130 (147)
T ss_dssp             EEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCS
T ss_pred             EEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCc
Confidence            999863 2 1122333 78899999999999985443

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=97.46  E-value=2.4e-07  Score=75.40  Aligned_cols=65  Identities=23%  Similarity=0.446  Sum_probs=53.8

Q ss_pred             CC-eEEEEEeCCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCccc-------------------------Hhhhhhc
Q psy17502        156 DD-IWLVEFFAPWCGHCKNLEPHWEKAASELE---GKVKLGAVDATVH-------------------------QRIAGEF  206 (461)
Q Consensus       156 ~~-~~~v~f~~~~c~~c~~~~~~~~~~a~~~~---~~i~f~~v~~~~~-------------------------~~l~~~~  206 (461)
                      ++ +++|.|+++||++|....+.+.++++.++   ..+.+..++++..                         ..++++|
T Consensus        25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (143)
T 2lus_A           25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY  104 (143)
Confidence            45 89999999999999999999999999883   3577777765543                         3688899


Q ss_pred             CcccccEEEEEcCC
Q psy17502        207 NIRGYPTIKFFSPG  220 (461)
Q Consensus       207 ~i~~~P~i~~~~~~  220 (461)
                      ++.++|+++++.+.
T Consensus       105 ~v~~~P~~~lid~~  118 (143)
T 2lus_A          105 GITGIPALVIVKKD  118 (143)
Confidence            99999999999844

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.13  E-value=3.8e-06  Score=74.86  Aligned_cols=94  Identities=13%  Similarity=0.111  Sum_probs=70.2

Q ss_pred             hHHHhcCCC-eEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC---------------------------c
Q psy17502         27 DDKVIKSDE-VWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE---------------------------E   77 (461)
Q Consensus        27 ~~~~~~~~~-~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~---------------------------~   77 (461)
                      .+ .+..++ .+|+.|+++||+.|....+.+.++++++++ .+.++.|+++.                           .
T Consensus        27 ~d-~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~  105 (249)
T 3a2v_A           27 DH-YVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQ  105 (249)
T ss_dssp             HH-HHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTT
T ss_pred             HH-HhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCc
Confidence            44 342344 567788999999999999999999999875 48888888864                           2


Q ss_pred             hhhHhhcCCC-------CccEEEEEc-CCCCCccccCC----cchhHHHHHHHHHH
Q psy17502         78 KSLSSSHGVT-------GFPTVKIFS-DKRNPTPYQGA----RTADAIIDVALEAI  121 (461)
Q Consensus        78 ~~l~~~~~i~-------~~P~l~~~~-~g~~~~~y~g~----~~~~~i~~~i~~~~  121 (461)
                      .++++.||+.       .+|+++++. +|.....+.|.    ++.+++...|....
T Consensus       106 ~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          106 GTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             SHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence            3588889987       899999997 66444444343    57788888887653

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.13  E-value=3.8e-06  Score=73.80  Aligned_cols=89  Identities=13%  Similarity=0.163  Sum_probs=66.3

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~   82 (461)
                      .+++++|.|| +.||+.|+...|.+.++++++++ .+.++.|+.+..                            ..+++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            4579999999 99999999999999999998853 477777776531                            13566


Q ss_pred             hcCC-----CCccEEEEEc-CCCCCccccC----CcchhHHHHHHHHHH
Q psy17502         83 SHGV-----TGFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALEAI  121 (461)
Q Consensus        83 ~~~i-----~~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~~~  121 (461)
                      .|++     ..+|+.+++. +|.....+.|    ..+.+++.+.|....
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            7777     3689999997 6655554444    245678888777654

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.13  E-value=2e-05  Score=67.64  Aligned_cols=43  Identities=19%  Similarity=0.405  Sum_probs=38.0

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD   75 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~   75 (461)
                      ..++.+|.|+++||++|+.+.|.+.++.+++.+++.|..+...
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecCC
Confidence            3578999999999999999999999999988878888877763

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.40  E-value=3.5e-07  Score=76.10  Aligned_cols=86  Identities=15%  Similarity=0.225  Sum_probs=58.0

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHH-HHHHhc--CceEEEEEeCcccHhhhhhcC------------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEK-AASELE--GKVKLGAVDATVHQRIAGEFN------------------------  207 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~-~a~~~~--~~i~f~~v~~~~~~~l~~~~~------------------------  207 (461)
                      .+++++|.|+++||++|....+.+.+ ++..+.  ..+.++.|+++...+..++|.                        
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            35789999999999999999999998 887775  468888887665443333332                        


Q ss_pred             cccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502        208 IRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       208 i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~  244 (461)
                      +.++|+++++...+   .....+.| .+.+++.+++.
T Consensus       112 ~~~~P~~~lid~~G---~i~~~~~g-~~~~~l~~~l~  144 (159)
T 2ls5_A          112 DAGITRNVLIDREG---KIVKLTRL-YNEEEFASLVQ  144 (159)
Confidence            56689988885432   23333444 34445555543

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.11  E-value=1.4e-05  Score=69.65  Aligned_cols=89  Identities=12%  Similarity=0.124  Sum_probs=66.6

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~   82 (461)
                      .+++++|.|| +.||++|....|.+.++++++++ .+.++.|+++..                            ..+++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  126 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  126 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence            4579999999 99999999999999999999864 477887776532                            13566


Q ss_pred             hcCCC------CccEEEEEc-CCCCCccccCC----cchhHHHHHHHHHH
Q psy17502         83 SHGVT------GFPTVKIFS-DKRNPTPYQGA----RTADAIIDVALEAI  121 (461)
Q Consensus        83 ~~~i~------~~P~l~~~~-~g~~~~~y~g~----~~~~~i~~~i~~~~  121 (461)
                      .|++.      .+|+.+++. +|.....+.|.    ++.+++.+.+....
T Consensus       127 ~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          127 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            77774      589999997 66554544443    45678888777654

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.11  E-value=1.3e-05  Score=68.62  Aligned_cols=90  Identities=12%  Similarity=0.076  Sum_probs=66.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcc--------c---Hhhh-hh----------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATV--------H---QRIA-GE----------------  205 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~--------~---~~l~-~~----------------  205 (461)
                      .+++++|.|+++||+.|....+.+.++++.+++. +.+..|+++.        .   .+.+ ++                
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            4579999999999999999999999999999764 8888887651        1   1122 11                


Q ss_pred             -------------cCccccc------EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        206 -------------FNIRGYP------TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       206 -------------~~i~~~P------~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                                   +++.+.|      +.+++.+.+   .....+.|..+.+.+.++|.+..
T Consensus       127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G---~i~~~~~g~~~~~~l~~~i~~ll  184 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDG---VPVERFSPGASVKDIEKKLIPLL  184 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTS---CEEEEECTTCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCCCccccccceEEEECCCC---cEEEEECCCCCHHHHHHHHHHHH
Confidence                         3677788      666665432   24556778888999988887654

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.10  E-value=1.3e-05  Score=68.02  Aligned_cols=87  Identities=13%  Similarity=0.152  Sum_probs=62.0

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCch---------------------hhHhhcCCCC-
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEK---------------------SLSSSHGVTG-   88 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~---------------------~l~~~~~i~~-   88 (461)
                      .+++++|.|| +.||+.|....|.+.+++++++++ +.++.|.++...                     ++++.|++.. 
T Consensus        50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~  129 (179)
T 3ixr_A           50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKE  129 (179)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCccc
Confidence            3558888888 999999999999999999999763 788888776422                     3677777753 


Q ss_pred             -----------ccEEEEEc-CCCCCccccCC---cchhHHHHHHHH
Q psy17502         89 -----------FPTVKIFS-DKRNPTPYQGA---RTADAIIDVALE  119 (461)
Q Consensus        89 -----------~P~l~~~~-~g~~~~~y~g~---~~~~~i~~~i~~  119 (461)
                                 .|+.+++. +|.....+.+.   ...+++.+.+..
T Consensus       130 ~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~  175 (179)
T 3ixr_A          130 KTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKA  175 (179)
T ss_dssp             ECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHH
T ss_pred             ccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence                       58888887 66555555443   334455555543

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.08  E-value=1.1e-05  Score=69.51  Aligned_cols=89  Identities=9%  Similarity=0.075  Sum_probs=69.7

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc-------------------------cHhhhhhcCc
Q psy17502        156 DDIWLVEFF-APWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV-------------------------HQRIAGEFNI  208 (461)
Q Consensus       156 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~-------------------------~~~l~~~~~i  208 (461)
                      +++++|.|+ ++||++|....+.+.++++.+++ .+.+..|+.+.                         +..+++.|++
T Consensus        45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  124 (195)
T 2bmx_A           45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV  124 (195)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred             CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCC
Confidence            578999999 99999999999999999999975 58888877653                         3457788999


Q ss_pred             c-----cccEEEEEcCCCCCCcCcccccCCC----CHHHHHHHHHhhc
Q psy17502        209 R-----GYPTIKFFSPGSRSASDAQEYNGGR----TSQDIVTWALNKY  247 (461)
Q Consensus       209 ~-----~~P~i~~~~~~~~~~~~~~~y~g~~----~~~~i~~fi~~~~  247 (461)
                      .     ..|+++++.+.+   .....+.|..    +.+++.++|.+..
T Consensus       125 ~~~~g~~~P~~~lid~~G---~i~~~~~g~~~~~~~~~~l~~~l~~l~  169 (195)
T 2bmx_A          125 LNADGVADRVTFIVDPNN---EIQFVSATAGSVGRNVDEVLRVLDALQ  169 (195)
T ss_dssp             BCTTSSBCEEEEEECTTS---BEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             cccCCCccceEEEEcCCC---eEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            8     899999997543   2344454543    7889999887654

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.06  E-value=9.2e-06  Score=69.37  Aligned_cols=89  Identities=11%  Similarity=0.008  Sum_probs=65.9

Q ss_pred             CCCeEEEEEEC-CCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCch-------------------------hhHhhcC
Q psy17502         33 SDEVWIVEYYA-PWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEK-------------------------SLSSSHG   85 (461)
Q Consensus        33 ~~~~~lv~f~~-~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~-------------------------~l~~~~~   85 (461)
                      .+++++|.||+ .||+.|+...|.+.++++++++ .+.++.|+.+...                         .+++.||
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  108 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence            35789999995 9999999999999999998864 4778777765321                         2556667


Q ss_pred             CC------CccEEEEEc-CCCCCccccCCc----chhHHHHHHHHHH
Q psy17502         86 VT------GFPTVKIFS-DKRNPTPYQGAR----TADAIIDVALEAI  121 (461)
Q Consensus        86 i~------~~P~l~~~~-~g~~~~~y~g~~----~~~~i~~~i~~~~  121 (461)
                      +.      ..|+.+++. +|.....+.|..    +.+++.+.+....
T Consensus       109 v~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            65      369999997 665555565543    5778888887654

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.05  E-value=7.6e-06  Score=69.93  Aligned_cols=89  Identities=16%  Similarity=0.168  Sum_probs=67.8

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc-------------------------cHhhhhhcCc
Q psy17502        156 DDIWLVEFF-APWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV-------------------------HQRIAGEFNI  208 (461)
Q Consensus       156 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~-------------------------~~~l~~~~~i  208 (461)
                      +++++|.|+ ++||++|....+.+.++++.+++ .+.+..|+.+.                         +..+++.|++
T Consensus        31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  110 (187)
T 1we0_A           31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV  110 (187)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred             CCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCC
Confidence            578999999 99999999999999999999874 58888877653                         3457788999


Q ss_pred             c------cccEEEEEcCCCCCCcCcccccCC----CCHHHHHHHHHhhc
Q psy17502        209 R------GYPTIKFFSPGSRSASDAQEYNGG----RTSQDIVTWALNKY  247 (461)
Q Consensus       209 ~------~~P~i~~~~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~~  247 (461)
                      .      ..|+++++...+   .....+.|.    .+.++|.+.|.+..
T Consensus       111 ~~~~~g~~~P~~~lid~~G---~i~~~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          111 LNEETGLADRGTFIIDPDG---VIQAIEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             EETTTTEECEEEEEECTTS---BEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             CcCCCCceeeEEEEECCCC---eEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            8      899999996442   234445554    26777887776543

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.03  E-value=2.4e-05  Score=64.78  Aligned_cols=86  Identities=12%  Similarity=0.082  Sum_probs=63.9

Q ss_pred             CeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc-----------------------cHhhhhhcCcc--
Q psy17502        157 DIWLVEFF-APWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV-----------------------HQRIAGEFNIR--  209 (461)
Q Consensus       157 ~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~-----------------------~~~l~~~~~i~--  209 (461)
                      ++++|.|| ++||++|....+.+.++++.+++ .+.+..|+++.                       +..+++.|++.  
T Consensus        37 ~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~  116 (160)
T 1xvw_A           37 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNE  116 (160)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEET
T ss_pred             CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCccc
Confidence            48999998 99999999999999999999874 58888877653                       55688899998  


Q ss_pred             --ccc--EEEEEcCCCCCCcCcccccCCC----CHHHHHHHHHh
Q psy17502        210 --GYP--TIKFFSPGSRSASDAQEYNGGR----TSQDIVTWALN  245 (461)
Q Consensus       210 --~~P--~i~~~~~~~~~~~~~~~y~g~~----~~~~i~~fi~~  245 (461)
                        ++|  +.+++...+   .....+.|..    +.+++.+.+.+
T Consensus       117 ~~~~p~~~~~lid~~G---~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          117 QAGIANRGTFVVDRSG---IIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             TTTEECSEEEEECTTS---BEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             cCCCeeeeEEEECCCC---eEEEEEecCCCCCCCHHHHHHHHHH
Confidence              888  677775442   2344455543    45667666643

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.03  E-value=7.6e-06  Score=70.66  Aligned_cols=89  Identities=6%  Similarity=0.093  Sum_probs=68.4

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc----------------------------cHhhhh
Q psy17502        155 SDDIWLVEFF-APWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV----------------------------HQRIAG  204 (461)
Q Consensus       155 ~~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~----------------------------~~~l~~  204 (461)
                      .+++++|.|+ ++||++|....+.+.++++.+++ .+.+..|+.+.                            +..+++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            4578999999 99999999999999999998864 48887776643                            346788


Q ss_pred             hcCcc-----cccEEEEEcCCCCCCcCcccccCCC----CHHHHHHHHHhh
Q psy17502        205 EFNIR-----GYPTIKFFSPGSRSASDAQEYNGGR----TSQDIVTWALNK  246 (461)
Q Consensus       205 ~~~i~-----~~P~i~~~~~~~~~~~~~~~y~g~~----~~~~i~~fi~~~  246 (461)
                      .|++.     ..|+.+++.+.+   .....+.|..    +.++|.+.|.+.
T Consensus       112 ~~~v~~~~g~~~P~~~lid~~G---~i~~~~~g~~~~~~~~~~l~~~l~~l  159 (198)
T 1zof_A          112 DYDVLFEEAIALRGAFLIDKNM---KVRHAVINDLPLGRNADEMLRMVDAL  159 (198)
T ss_dssp             HTTCEETTTEECEEEEEEETTT---EEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HhCCcccCCcccceEEEECCCC---EEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            89998     899999996542   2344455543    678888887654

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=98.03  E-value=1.6e-05  Score=64.73  Aligned_cols=80  Identities=20%  Similarity=0.356  Sum_probs=60.3

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-------------------------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-------------------------------------   75 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-------------------------------------   75 (461)
                      +.+..++.|+.++|++|+++.+.+.++     +++.+...+.-                                     
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~   87 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM-----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVG   87 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC-----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc-----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCc
Confidence            457899999999999999999988653     33433322210                                     


Q ss_pred             ---------CchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         76 ---------EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        76 ---------~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                               ++.++++++||+++||+++ .+|+   .+.|..+.+.|.++|....
T Consensus        88 ~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~~  138 (147)
T 3gv1_A           88 GSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKNQ  138 (147)
T ss_dssp             CCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHTS
T ss_pred             cHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHHH
Confidence                     1235788999999999998 6664   4789999999999987754

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.03  E-value=9.7e-06  Score=68.16  Aligned_cols=89  Identities=8%  Similarity=0.047  Sum_probs=63.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCc--------c---cHhhh-------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDAT--------V---HQRIA-------------------  203 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~--------~---~~~l~-------------------  203 (461)
                      .+++++|.|+++||+.|. ..+.+.++++.+++. +.+..|+++        .   ..+.+                   
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            467999999999999999 999999999999764 888777652        0   11112                   


Q ss_pred             -----------hhcCccccc------EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        204 -----------GEFNIRGYP------TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       204 -----------~~~~i~~~P------~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                                 ..|++.+.|      +.+++.+.+   .....+.|..+.+.+.+.|.+..
T Consensus       110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G---~i~~~~~g~~~~~~l~~~i~~ll  167 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKG---KVYERYSSLTKPSSLSETIEELL  167 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSS---CEEEEECTTSCGGGGHHHHHHHH
T ss_pred             cchHHHHHHHhccCCcCCCCcccccceEEEECCCC---CEEEEeCCCCCHHHHHHHHHHHH
Confidence                       146788889      777775442   24556778888888888876643

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.02  E-value=1.2e-05  Score=67.47  Aligned_cols=89  Identities=13%  Similarity=0.059  Sum_probs=65.6

Q ss_pred             CCCeEEEEEECCCCH-hHHhhHHHHHHHHHHcC---CceEEEEEecCC--c-----------------------------
Q psy17502         33 SDEVWIVEYYAPWCG-HCQSFKDEYMKLATALK---GVVKVGAVNADE--E-----------------------------   77 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~-~C~~~~~~~~~~a~~~~---~~v~~~~vd~~~--~-----------------------------   77 (461)
                      .+++++|.||++||+ .|....+.+.++++++.   .++.++.|.++.  .                             
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~  106 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDL  106 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHH
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHH
Confidence            367999999999997 69999999999999985   347777776641  0                             


Q ss_pred             hhhHhhcCC---------CCccEEEEEc-CCCCCccccCC-cchhHHHHHHHHHH
Q psy17502         78 KSLSSSHGV---------TGFPTVKIFS-DKRNPTPYQGA-RTADAIIDVALEAI  121 (461)
Q Consensus        78 ~~l~~~~~i---------~~~P~l~~~~-~g~~~~~y~g~-~~~~~i~~~i~~~~  121 (461)
                      .+++++||+         .+.|+++++. +|.....|.|. .+.+++.+.|.+..
T Consensus       107 ~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~  161 (170)
T 3me7_A          107 FKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLAR  161 (170)
T ss_dssp             HHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence            135555553         4567888887 66555567775 67888888887765

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=97.98  E-value=2.3e-05  Score=65.22  Aligned_cols=85  Identities=14%  Similarity=0.058  Sum_probs=57.4

Q ss_pred             CCCeEEEEEEC-CCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-----------------------hhhHhhcCCC-
Q psy17502         33 SDEVWIVEYYA-PWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-----------------------KSLSSSHGVT-   87 (461)
Q Consensus        33 ~~~~~lv~f~~-~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i~-   87 (461)
                      .+++++|.||+ .||++|....|.+.++++++ ..+.++.|+.+..                       ..+++.|++. 
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  119 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI  119 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCcc
Confidence            45689999995 99999999999999999888 5577777776532                       2344556655 


Q ss_pred             ---C--ccEEEEEc-CCCCCccccCC-----cchhHHHHHHH
Q psy17502         88 ---G--FPTVKIFS-DKRNPTPYQGA-----RTADAIIDVAL  118 (461)
Q Consensus        88 ---~--~P~l~~~~-~g~~~~~y~g~-----~~~~~i~~~i~  118 (461)
                         +  .|+.+++. +|.....+.|.     .+.+++.+.+.
T Consensus       120 ~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~  161 (163)
T 1psq_A          120 NEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAK  161 (163)
T ss_dssp             TTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred             ccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHH
Confidence               3  27777776 55544555442     22245555543

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=97.98  E-value=3.7e-05  Score=68.36  Aligned_cols=88  Identities=13%  Similarity=0.158  Sum_probs=66.0

Q ss_pred             CCCeEEEEEEC-CCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHh
Q psy17502         33 SDEVWIVEYYA-PWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~~-~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~   82 (461)
                      .+++++|.||+ .||+.|....|.+.++++++++ .+.++.|+++..                            .++++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~  155 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK  155 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence            45799999999 9999999999999999999975 478888877632                            13667


Q ss_pred             hcCCC------CccEEEEEc-CCCCCccccC----CcchhHHHHHHHHH
Q psy17502         83 SHGVT------GFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALEA  120 (461)
Q Consensus        83 ~~~i~------~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~~  120 (461)
                      .||+.      .+|+.+++. +|.....+.|    .++.+++.+.+...
T Consensus       156 ~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          156 DYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            78887      689999997 6644444333    34567777777654

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=3.7e-05  Score=64.52  Aligned_cols=92  Identities=12%  Similarity=0.122  Sum_probs=71.9

Q ss_pred             cCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCch---------------hhHhh---cCCCCcc
Q psy17502         32 KSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEEK---------------SLSSS---HGVTGFP   90 (461)
Q Consensus        32 ~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~~---------------~l~~~---~~i~~~P   90 (461)
                      ++.++++|+++++||..|..+....   +++.+-++..+.+...|.+...               .++..   +++.++|
T Consensus        53 ~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P  132 (178)
T 2ec4_A           53 RDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFP  132 (178)
T ss_dssp             TTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCS
T ss_pred             hhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCC
Confidence            4568999999999999999997655   5566666667888899988654               34443   8999999


Q ss_pred             EEEEEc-CC---CCCccccCCcchhHHHHHHHHHHhh
Q psy17502         91 TVKIFS-DK---RNPTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        91 ~l~~~~-~g---~~~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      ++.++. .+   +.+.+..|..+++++.+.++..+..
T Consensus       133 ~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e~  169 (178)
T 2ec4_A          133 LFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEI  169 (178)
T ss_dssp             EEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            999986 22   3356789999999999988877643

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.97  E-value=1.2e-05  Score=59.88  Aligned_cols=69  Identities=16%  Similarity=0.237  Sum_probs=50.5

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-----Cc----hhhHhhcCCCCccEEEEEcCCCCCccccCCc
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-----EE----KSLSSSHGVTGFPTVKIFSDKRNPTPYQGAR  108 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-----~~----~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~  108 (461)
                      ++.|+++||++|+++.+.+.+..      +.+-.+|.+     +.    +++.+.+++..+|++++  +|+    .-|..
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~g------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~----~i~G~   81 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREG------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDK----HVLGY   81 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTE----EEESC
T ss_pred             EEEEECCCChHHHHHHHHHHHcC------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCE----EEeCC
Confidence            67799999999999988887653      334445655     23    56778899999999987  552    33445


Q ss_pred             chhHHHHHHH
Q psy17502        109 TADAIIDVAL  118 (461)
Q Consensus       109 ~~~~i~~~i~  118 (461)
                      +.+.|.+++.
T Consensus        82 ~~~~l~~~l~   91 (92)
T 3ic4_A           82 NEEKLKELIR   91 (92)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHhc
Confidence            7888888764

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=97.97  E-value=2.2e-05  Score=65.76  Aligned_cols=90  Identities=9%  Similarity=0.097  Sum_probs=64.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcc--------c---Hhhhh-hc---------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATV--------H---QRIAG-EF---------------  206 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~--------~---~~l~~-~~---------------  206 (461)
                      .+++++|.|+++||++|....+.+.++++.+++. +.+..|+++.        .   .+.++ ++               
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            4689999999999999999999999999999764 8888887641        1   12223 32               


Q ss_pred             --------------Cc--cccc---EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        207 --------------NI--RGYP---TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       207 --------------~i--~~~P---~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                                    ++  .++|   +.+++.+.+   .....+.|..+.+.+.++|.+..
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G---~i~~~~~g~~~~~~l~~~i~~ll  167 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDG---QVVDRYYPTTSPLSLERDIKQLL  167 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTS---CEEEEECTTSCGGGGHHHHHHHT
T ss_pred             chHHHHHHHHhcCCCccCCcccccccEEEECCCC---CEEEeeCCCCCHHHHHHHHHHHh
Confidence                          33  4567   777775432   24556778888888888887643

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=97.97  E-value=2e-05  Score=66.96  Aligned_cols=89  Identities=10%  Similarity=0.089  Sum_probs=63.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcc--------c---Hhhhhh-----------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATV--------H---QRIAGE-----------------  205 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~--------~---~~l~~~-----------------  205 (461)
                      .+++++|.|+++||++|....+.+.++++.+++. +.+..|+++.        .   .+.+++                 
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~  127 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT  127 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence            4579999999999999999999999999999764 8888887642        1   112222                 


Q ss_pred             -------cCccccc-------EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        206 -------FNIRGYP-------TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       206 -------~~i~~~P-------~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                             |++...|       +.+++.+.+   .....+.|..+.++|.+.|.+.
T Consensus       128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G---~i~~~~~g~~~~~~l~~~i~~l  179 (181)
T 2p31_A          128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDG---KVVGAWDPTVSVEEVRPQITAL  179 (181)
T ss_dssp             TSCHHHHHHHHHHSCCCCSTTCEEEECTTS---CEEEEECTTSCHHHHHHHHHTT
T ss_pred             cchhhhhhhhhcCCCccccceeEEEEcCCC---CEEEEeCCCCCHHHHHHHHHHH
Confidence                   2244567       555554432   2455677888888888888653

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.95  E-value=1.8e-05  Score=68.00  Aligned_cols=42  Identities=24%  Similarity=0.520  Sum_probs=36.1

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA   74 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~   74 (461)
                      ..++.++.|+++||++|+.+.|.+.++.+++.+++.+..+..
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence            456899999999999999999999999999877777766654

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=97.95  E-value=2.2e-05  Score=65.99  Aligned_cols=43  Identities=16%  Similarity=0.188  Sum_probs=36.6

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVGAVNADE   76 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~   76 (461)
                      .+++++|.|| +.||++|....|.+.++++++ .++.++.|+.+.
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~   89 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDL   89 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCC
Confidence            3568999998 899999999999999999888 667788777654

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.94  E-value=4.3e-05  Score=64.38  Aligned_cols=42  Identities=19%  Similarity=0.248  Sum_probs=34.6

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHc--CCceEEEEEec
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATAL--KGVVKVGAVNA   74 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~--~~~v~~~~vd~   74 (461)
                      ..++.++.|+..+|++|+.+.+.+.++.+++  .+++.+...+.
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~   69 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   69 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeC
Confidence            3467899999999999999999999998888  66666665443

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=97.94  E-value=1.3e-05  Score=61.25  Aligned_cols=65  Identities=9%  Similarity=0.211  Sum_probs=47.8

Q ss_pred             cchhHHHhcCCCeEEEEEEC-----CCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502         24 SNFDDKVIKSDEVWIVEYYA-----PWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI   94 (461)
Q Consensus        24 ~~f~~~~~~~~~~~lv~f~~-----~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~   94 (461)
                      +.+++ +++.++  ++.|+.     +||++|+++.+.+.+..      +.|..+|++++++    +.+.+|+.++|+++ 
T Consensus         8 ~~~~~-~i~~~~--vvvf~~g~~~~~~C~~C~~~~~~L~~~~------i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~-   77 (105)
T 2yan_A            8 ERLKV-LTNKAS--VMLFMKGNKQEAKCGFSKQILEILNSTG------VEYETFDILEDEEVRQGLKAYSNWPTYPQLY-   77 (105)
T ss_dssp             HHHHH-HHTSSS--EEEEESBCSSSBCTTHHHHHHHHHHHHT------CCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE-
T ss_pred             HHHHH-HhccCC--EEEEEecCCCCCCCccHHHHHHHHHHCC------CCeEEEECCCCHHHHHHHHHHHCCCCCCeEE-
Confidence            44566 566654  344777     99999999998887652      6688899987765    55668999999984 


Q ss_pred             EcCCC
Q psy17502         95 FSDKR   99 (461)
Q Consensus        95 ~~~g~   99 (461)
                       .+|+
T Consensus        78 -i~g~   81 (105)
T 2yan_A           78 -VKGE   81 (105)
T ss_dssp             -ETTE
T ss_pred             -ECCE
Confidence             3554

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.93  E-value=5.5e-05  Score=64.19  Aligned_cols=41  Identities=22%  Similarity=0.440  Sum_probs=34.1

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN   73 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd   73 (461)
                      ..++.+|.|+.-.|++|+++.+.+.++.+++.+++.+..+.
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~   60 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNH   60 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEe
Confidence            34688999999999999999999999999987765555443

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=97.92  E-value=2.1e-05  Score=67.28  Aligned_cols=43  Identities=16%  Similarity=0.355  Sum_probs=36.1

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCC
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADE   76 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~   76 (461)
                      .++.+|.|++.||++|+.+.|.+   .++.+.+.+++.|..++..-
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   59 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSL   59 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechh
Confidence            35889999999999999999987   68888887778888777653

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.92  E-value=4.7e-05  Score=64.14  Aligned_cols=82  Identities=16%  Similarity=0.179  Sum_probs=62.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC--------------------------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA--------------------------------------  196 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~--------------------------------------  196 (461)
                      +.++.++.|++.||++|..+.+.+.++.+.+.+ +.+.....                                      
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~   99 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKAN   99 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCC
Confidence            356889999999999999999999999887754 55544431                                      


Q ss_pred             -------------------------------cccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        197 -------------------------------TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       197 -------------------------------~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                                                     ..+..++.++||.++|++++  +|       ..+.|..+.+.+.++|.+
T Consensus       100 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g-------~~~~G~~~~~~l~~~i~~  170 (175)
T 3gyk_A          100 ETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--ED-------ALVPGFVEQSQLQDAVDR  170 (175)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TT-------EEECSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CC-------EEeeCCCCHHHHHHHHHH
Confidence                                           22344677899999999987  33       256788899999988865


Q ss_pred             h
Q psy17502        246 K  246 (461)
Q Consensus       246 ~  246 (461)
                      .
T Consensus       171 ~  171 (175)
T 3gyk_A          171 A  171 (175)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.91  E-value=1.1e-05  Score=59.60  Aligned_cols=55  Identities=25%  Similarity=0.392  Sum_probs=44.2

Q ss_pred             EEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC--CchhhHhhc-CCCCccEEEEEcCCC
Q psy17502         37 WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD--EEKSLSSSH-GVTGFPTVKIFSDKR   99 (461)
Q Consensus        37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~--~~~~l~~~~-~i~~~P~l~~~~~g~   99 (461)
                      .++.|+++||++|+++.+.+++..      +.+..+|++  ..+++.+++ ++..+|++++  +|+
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~------i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~~--~g~   64 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG------VKYTDIDASTSLRQEMVQRANGRNTFPQIFI--GDY   64 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT------CCEEEECSCHHHHHHHHHHHHSSCCSCEEEE--TTE
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC------CCcEEEECCHHHHHHHHHHhCCCCCcCEEEE--CCE
Confidence            377899999999999998887652      567788887  556788889 9999999854  553

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=97.91  E-value=3.6e-05  Score=64.28  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=37.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT  197 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~  197 (461)
                      .+++++|.|+++||++|....+.+.++++.+++ .+.+..|+++
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d   73 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCN   73 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence            468999999999999999999999999999976 4888888764

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=97.90  E-value=5.1e-05  Score=64.75  Aligned_cols=90  Identities=12%  Similarity=0.112  Sum_probs=64.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCc--------ccHhhh---h-h----------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDAT--------VHQRIA---G-E----------------  205 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~--------~~~~l~---~-~----------------  205 (461)
                      .+++++|.|+++||++|....+.+.++++.+++. +.+..|.++        ...++.   + +                
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            4579999999999999999999999999999764 888777654        111211   1 1                


Q ss_pred             ----------------cCccccc---EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        206 ----------------FNIRGYP---TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       206 ----------------~~i~~~P---~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                                      +++..+|   +.+++.+.+   .....+.|..+.+.|.+.|.+.+
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G---~i~~~~~g~~~~~~l~~~i~~lL  182 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDG---VPVERFSPGASVKDIEEKLIPLL  182 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTS---CEEEEECTTCCHHHHHHHHHHHC
T ss_pred             chhHHHHHHHhhcCCccCCCccccceeEEEECCCC---CEEEEECCCCCHHHHHHHHHHHH
Confidence                            1334456   777775442   24556788889999999887754

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.90  E-value=7.5e-06  Score=64.11  Aligned_cols=69  Identities=20%  Similarity=0.337  Sum_probs=49.0

Q ss_pred             cchhHHHhcCCCeEEEEEECCCCHhHHhh-HHHHHHHHHHcCCceEEEEEecCCch-------hhHhhcCCCCccEEEEE
Q psy17502         24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSF-KDEYMKLATALKGVVKVGAVNADEEK-------SLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~-~~~~~~~a~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~P~l~~~   95 (461)
                      +.+.+ +++.++  ++.|+++||++|+++ .+.+.+..   ...+.+..+|++.++       ++.+++|+..+|+++  
T Consensus        16 ~~~~~-~i~~~~--Vvvf~~~~Cp~C~~alk~~L~~~~---~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~vf--   87 (118)
T 3c1r_A           16 KHVKD-LIAENE--IFVASKTYCPYCHAALNTLFEKLK---VPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIY--   87 (118)
T ss_dssp             HHHHH-HHHHSS--EEEEECSSCHHHHHHHHHHHTTSC---CCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEE--
T ss_pred             HHHHH-HHccCc--EEEEEcCCCcCHHHHHHHHHHHcC---CCCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEEE--
Confidence            34555 455554  666999999999998 77765543   123778888887664       588899999999973  


Q ss_pred             cCCCC
Q psy17502         96 SDKRN  100 (461)
Q Consensus        96 ~~g~~  100 (461)
                      .+|+.
T Consensus        88 i~g~~   92 (118)
T 3c1r_A           88 INGKH   92 (118)
T ss_dssp             ETTEE
T ss_pred             ECCEE
Confidence            46543

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.89  E-value=3.5e-05  Score=67.42  Aligned_cols=81  Identities=14%  Similarity=0.285  Sum_probs=59.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe---------------------------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD---------------------------------------  195 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~---------------------------------------  195 (461)
                      +.+++++.|+++||++|+.+.+.+.++++.   .+.+..+.                                       
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~  161 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  161 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChh
Confidence            457899999999999999999999888753   33333221                                       


Q ss_pred             -C----cccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        196 -A----TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       196 -~----~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                       |    +.+..+++++||.+.|++ ++.+|       ..+.|..+.+.|.+++...
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gtPt~-v~~dG-------~~~~G~~~~~~l~~~l~~~  209 (216)
T 1eej_A          162 SCDVDIADHYALGVQLGVSGTPAV-VLSNG-------TLVPGYQPPKEMKEFLDEH  209 (216)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEE-ECTTS-------CEEESCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCccCEE-EEcCC-------eEecCCCCHHHHHHHHHHh
Confidence             1    234567889999999998 45444       2457888899999888654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.88  E-value=4e-05  Score=66.74  Aligned_cols=80  Identities=18%  Similarity=0.272  Sum_probs=59.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC--------------------------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA--------------------------------------  196 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~--------------------------------------  196 (461)
                      +.+++++.|+++||++|+.+.+.+.++.+.   .+.+..+..                                      
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~---~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~  161 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL---GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  161 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChH
Confidence            457899999999999999999999887652   244432211                                      


Q ss_pred             ------cccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        197 ------TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       197 ------~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                            +.+.++++++||.+.|++++ .+|     .  .+.|..+.+.|.++|..
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG-----~--~~~G~~~~~~l~~~l~~  208 (211)
T 1t3b_A          162 KTPNIVKKHYELGIQFGVRGTPSIVT-STG-----E--LIGGYLKPADLLRALEE  208 (211)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEEC-TTS-----C--CCCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCEEEE-eCC-----E--EecCCCCHHHHHHHHHh
Confidence                  12456778999999999987 555     2  46788899999998865

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=97.88  E-value=5.5e-06  Score=68.63  Aligned_cols=86  Identities=13%  Similarity=0.160  Sum_probs=52.9

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCch---------------------hhHhhcCCC--
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEK---------------------SLSSSHGVT--   87 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~---------------------~l~~~~~i~--   87 (461)
                      .++++++.|| +.||++|+...|.+.++++++++ .+.++.|+.+...                     +++++|||.  
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~  108 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE  108 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccc
Confidence            4568899998 99999999999999999888865 4777777766422                     356667763  


Q ss_pred             ---------CccEEEEEc-CCCCCccc-----cCCcchhHHHHHHH
Q psy17502         88 ---------GFPTVKIFS-DKRNPTPY-----QGARTADAIIDVAL  118 (461)
Q Consensus        88 ---------~~P~l~~~~-~g~~~~~y-----~g~~~~~~i~~~i~  118 (461)
                               ..|+.++.. +|.....+     .+..+.+++.+.+.
T Consensus       109 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~  154 (157)
T 4g2e_A          109 FPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVK  154 (157)
T ss_dssp             CTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHH
T ss_pred             cccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHH
Confidence                     356777776 55433332     23445566666554

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=97.87  E-value=2.7e-06  Score=71.08  Aligned_cols=93  Identities=15%  Similarity=0.136  Sum_probs=64.7

Q ss_pred             HhcCCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCch---------------------hhHhhcCC
Q psy17502         30 VIKSDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEK---------------------SLSSSHGV   86 (461)
Q Consensus        30 ~~~~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~---------------------~l~~~~~i   86 (461)
                      ...+++++++.|| +.||++|....|.+.++++++++ .+.++.|+.+...                     ++++.|||
T Consensus        29 ~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv  108 (164)
T 4gqc_A           29 VLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNV  108 (164)
T ss_dssp             HHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred             HhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCC
Confidence            4446778888888 99999999999999988888865 3777777765321                     36677777


Q ss_pred             C----------CccEEEEEc-CCCCCccc-----cCCcchhHHHHHHHHHHh
Q psy17502         87 T----------GFPTVKIFS-DKRNPTPY-----QGARTADAIIDVALEAIR  122 (461)
Q Consensus        87 ~----------~~P~l~~~~-~g~~~~~y-----~g~~~~~~i~~~i~~~~~  122 (461)
                      .          ..|+.++.. +|.....+     .+..+.+++++.+.+...
T Consensus       109 ~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  160 (164)
T 4gqc_A          109 YHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  160 (164)
T ss_dssp             EEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred             cccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence            3          267788876 55433332     233466778777776553

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.85  E-value=0.00011  Score=62.81  Aligned_cols=41  Identities=22%  Similarity=0.374  Sum_probs=35.4

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA   74 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~   74 (461)
                      .++.++.|+.++|++|+.+.+.+.++.+++.+++.+..+..
T Consensus        25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (193)
T 2rem_A           25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA   65 (193)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred             CCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence            45789999999999999999999999998877777766654

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=97.81  E-value=2.3e-05  Score=65.15  Aligned_cols=44  Identities=14%  Similarity=0.224  Sum_probs=36.0

Q ss_pred             CCCeEEEEEE-CCCCHhHH-hhHHHHHHHHHHcCC-ceE-EEEEecCC
Q psy17502         33 SDEVWIVEYY-APWCGHCQ-SFKDEYMKLATALKG-VVK-VGAVNADE   76 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~-~~~~~~~~~a~~~~~-~v~-~~~vd~~~   76 (461)
                      ++++++|.|| +.||+.|. ...|.+.++++++++ .+. ++.|+.+.
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~   81 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND   81 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence            4568999999 89999999 899999999998863 466 77776653

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=97.80  E-value=4.2e-05  Score=65.12  Aligned_cols=38  Identities=18%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEe
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN   73 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd   73 (461)
                      +++.+|.|++.||+||+++.|.+.++.+.+  ++.|..+.
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~--~v~~~~~p   59 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA--GTDIGKMH   59 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH--TSCCEEEE
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh--CCeEEEEe
Confidence            578999999999999999999999999887  34444444

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=97.80  E-value=4.1e-05  Score=63.94  Aligned_cols=84  Identities=15%  Similarity=0.076  Sum_probs=55.4

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-----------------------hhhHhhcCCCC
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-----------------------KSLSSSHGVTG   88 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i~~   88 (461)
                      .+++++|.|| +.||++|....|.+.+++++  ..+.++.|+.+..                       .++++.||+..
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  122 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK--EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVM  122 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEE
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc--CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCcc
Confidence            4568888898 78999999999999999877  3467777766532                       23455566654


Q ss_pred             ------ccEEEEEc-CCCCCcccc-----CCcchhHHHHHHH
Q psy17502         89 ------FPTVKIFS-DKRNPTPYQ-----GARTADAIIDVAL  118 (461)
Q Consensus        89 ------~P~l~~~~-~g~~~~~y~-----g~~~~~~i~~~i~  118 (461)
                            .|+.+++. +|.....+.     +..+.+++.+.+.
T Consensus       123 ~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~  164 (166)
T 3p7x_A          123 EELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYK  164 (166)
T ss_dssp             TTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred             ccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHh
Confidence                  78888886 554443322     2233455555443

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=97.80  E-value=5.1e-05  Score=64.44  Aligned_cols=43  Identities=12%  Similarity=0.116  Sum_probs=37.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT  197 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~  197 (461)
                      .+++++|.|+++||+.|....+.+.++++.+.+ .+.+..|+++
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   89 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCN   89 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence            467999999999999999999999999999975 4888888754

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.79  E-value=4.4e-05  Score=57.48  Aligned_cols=58  Identities=17%  Similarity=0.210  Sum_probs=44.2

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhc-----CCCCccEEEEEcCCC
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH-----GVTGFPTVKIFSDKR   99 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~-----~i~~~P~l~~~~~g~   99 (461)
                      +..-++.|+++||++|+++.+.+.+..      +.+..+|++.+++..+.+     |...+|++++  +|+
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~------i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi--~g~   76 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRKG------VEFQEYCIDGDNEAREAMAARANGKRSLPQIFI--DDQ   76 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHHT------CCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEE--TTE
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHCC------CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEE--CCE
Confidence            445688899999999999998887652      567778888876654444     8999998843  553

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.78  E-value=4.5e-05  Score=55.12  Aligned_cols=54  Identities=20%  Similarity=0.265  Sum_probs=41.4

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch----hhHhhcCCCCccEEEEEcCCC
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK----SLSSSHGVTGFPTVKIFSDKR   99 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~P~l~~~~~g~   99 (461)
                      ++.|+++||++|+.+.+.+.+.      .+.+..+|++.++    ++.+.+++..+|++++  +|+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~~--~g~   60 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DAQ   60 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TTE
T ss_pred             EEEEECCCChhHHHHHHHHHHC------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence            6789999999999999888764      2556677877654    3567889999999853  553

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.74  E-value=4.7e-05  Score=56.46  Aligned_cols=55  Identities=16%  Similarity=0.289  Sum_probs=41.8

Q ss_pred             EEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEEEcCCC
Q psy17502         37 WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKIFSDKR   99 (461)
Q Consensus        37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~~~~g~   99 (461)
                      .++.|+++||++|+++.+.+++.      .+.+..+|+++++.    +.+.+++..+|+++  .+|+
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~--~~g~   65 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK------GAEFNEIDASATPELRAEMQERSGRNTFPQIF--IGSV   65 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEEE--ETTE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence            37789999999999998887753      26677888887654    55588999999763  3553

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=97.73  E-value=4.2e-05  Score=68.52  Aligned_cols=88  Identities=13%  Similarity=0.136  Sum_probs=64.3

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~   82 (461)
                      .+++++|.|| +.||+.|....|.+.++++++++ .+.++.|+++..                            .++++
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~  169 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  169 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence            4568999999 99999999999999999999975 478888877632                            13666


Q ss_pred             hcCCC------CccEEEEEc-CCCCCccccC----CcchhHHHHHHHHH
Q psy17502         83 SHGVT------GFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALEA  120 (461)
Q Consensus        83 ~~~i~------~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~~  120 (461)
                      .||+.      .+|+++++. +|.....+.+    .++.++++..|...
T Consensus       170 ~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          170 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            77775      479998887 5544444333    34566777766543

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=97.72  E-value=4.4e-05  Score=63.80  Aligned_cols=55  Identities=13%  Similarity=0.245  Sum_probs=40.6

Q ss_pred             CCCeEEEEEE-CCCCHhHHh-hHHHHHHHHHHcCC-ce-EEEEEecCCc---hhhHhhcCCC
Q psy17502         33 SDEVWIVEYY-APWCGHCQS-FKDEYMKLATALKG-VV-KVGAVNADEE---KSLSSSHGVT   87 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~-~~~~~~~~a~~~~~-~v-~~~~vd~~~~---~~l~~~~~i~   87 (461)
                      .+++++|.|| +.||+.|+. ..|.+.++++++++ .+ .++.|+.+..   ...++++++.
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~   91 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGAD   91 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence            3457777776 999999999 99999999998864 48 8888887642   2344444543

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=97.71  E-value=8.2e-05  Score=64.32  Aligned_cols=88  Identities=11%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc----------------------------cHhhhhh
Q psy17502        156 DDIWLVEFF-APWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV----------------------------HQRIAGE  205 (461)
Q Consensus       156 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~----------------------------~~~l~~~  205 (461)
                      +++++|.|+ ++||+.|....+.+.++++.+++ .+.+..|+.+.                            ...+++.
T Consensus        36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  115 (202)
T 1uul_A           36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  115 (202)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHH
Confidence            578999999 99999999999999999999975 58888877643                            3457788


Q ss_pred             cCcc------cccEEEEEcCCCCCCcCcccccC----CCCHHHHHHHHHhh
Q psy17502        206 FNIR------GYPTIKFFSPGSRSASDAQEYNG----GRTSQDIVTWALNK  246 (461)
Q Consensus       206 ~~i~------~~P~i~~~~~~~~~~~~~~~y~g----~~~~~~i~~fi~~~  246 (461)
                      |++.      ..|+++++.+.++   ....+.|    ..+.+++.+.|...
T Consensus       116 ygv~~~~~g~~~P~~~lid~~G~---i~~~~~g~~~~~~~~~ell~~l~~l  163 (202)
T 1uul_A          116 YGVLKEEDGVAYRGLFIIDPKQN---LRQITVNDLPVGRDVDEALRLVKAF  163 (202)
T ss_dssp             HTCEETTTTEECEEEEEECTTSB---EEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             cCCccCCCCceeeEEEEECCCCE---EEEEEeCCCCCCCCHHHHHHHHHHh
Confidence            9998      8999999965432   2233333    24678888877653

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=97.71  E-value=7.9e-05  Score=63.07  Aligned_cols=43  Identities=14%  Similarity=0.030  Sum_probs=37.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDAT  197 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~  197 (461)
                      .+++++|.|+++||++|....+.+.++++.+++. +.+..|.++
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d   80 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCN   80 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence            4579999999999999999999999999999864 888887643

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.70  E-value=0.00011  Score=51.84  Aligned_cols=68  Identities=15%  Similarity=0.318  Sum_probs=50.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh---hcCcccccEEEEEcCCCCCCcCcccccCCCCH
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG---EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTS  236 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~---~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~  236 (461)
                      ++.|+++||++|+...+.+.+.      .+.|..+|++.++++.+   ++++.++|++++  ++     ..   -+..+.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g-----~~---~~g~~~   66 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DG-----EH---WSGFRP   66 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TT-----EE---EESCCH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CC-----eE---EcCCCH
Confidence            5678999999999988887763      36777788877665555   789999999874  33     21   234567


Q ss_pred             HHHHHHH
Q psy17502        237 QDIVTWA  243 (461)
Q Consensus       237 ~~i~~fi  243 (461)
                      +.|.+++
T Consensus        67 ~~l~~~l   73 (75)
T 1r7h_A           67 ERIKQLQ   73 (75)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7887776

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=97.68  E-value=0.00013  Score=62.52  Aligned_cols=89  Identities=12%  Similarity=0.151  Sum_probs=65.8

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCcc----------------------------cHhhhh
Q psy17502        155 SDDIWLVEFF-APWCGHCKNLEPHWEKAASELE-GKVKLGAVDATV----------------------------HQRIAG  204 (461)
Q Consensus       155 ~~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~----------------------------~~~l~~  204 (461)
                      .+++++|.|+ ++||+.|....+.+.++++.++ ..+.+..|+.+.                            +..+++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            4578999999 9999999999999999999886 357777776542                            235778


Q ss_pred             hcCcc-----cccEEEEEcCCCCCCcCcccccCC----CCHHHHHHHHHhh
Q psy17502        205 EFNIR-----GYPTIKFFSPGSRSASDAQEYNGG----RTSQDIVTWALNK  246 (461)
Q Consensus       205 ~~~i~-----~~P~i~~~~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~  246 (461)
                      .|++.     ..|+++++.+.++   ....+.|.    .+.+++.+.|...
T Consensus       110 ~~gv~~~~g~~~P~~~liD~~G~---i~~~~~g~~~~~~~~~~l~~~l~~l  157 (192)
T 2h01_A          110 SYDVLFNESVALRAFVLIDKQGV---VQHLLVNNLALGRSVDEILRLIDAL  157 (192)
T ss_dssp             HTTCEETTTEECCEEEEECTTSB---EEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HhCCcCcCCceeeEEEEEcCCCE---EEEEEeCCCCCCCCHHHHHHHHHHH
Confidence            89998     7999999965432   23333342    4577777777543

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.67  E-value=0.00013  Score=53.82  Aligned_cols=74  Identities=20%  Similarity=0.367  Sum_probs=53.5

Q ss_pred             EEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhc-----CCCCccEEEEEcCCCCCccccCCcchh
Q psy17502         37 WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH-----GVTGFPTVKIFSDKRNPTPYQGARTAD  111 (461)
Q Consensus        37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~-----~i~~~P~l~~~~~g~~~~~y~g~~~~~  111 (461)
                      .++.|+.+||++|++....+.+.      .+.|-.+|.+++++..+.+     |.+.+|++++ .+|...    +..+.+
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~l----~~~~~~   73 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTAN------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGSTL----TNPSAD   73 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCEE----ESCCHH
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhc------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEEE----eCCCHH
Confidence            47889999999999988776542      3778889998887654432     7889999865 455322    234677


Q ss_pred             HHHHHHHHHH
Q psy17502        112 AIIDVALEAI  121 (461)
Q Consensus       112 ~i~~~i~~~~  121 (461)
                      ++.+++.+..
T Consensus        74 el~~~L~el~   83 (92)
T 2lqo_A           74 EVKAKLVKIA   83 (92)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            8888887664

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.66  E-value=0.00012  Score=55.59  Aligned_cols=72  Identities=18%  Similarity=0.171  Sum_probs=49.0

Q ss_pred             CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-----hhhH----hhcCCCCccEEEEEcCCCCCcccc
Q psy17502         35 EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-----KSLS----SSHGVTGFPTVKIFSDKRNPTPYQ  105 (461)
Q Consensus        35 ~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-----~~l~----~~~~i~~~P~l~~~~~g~~~~~y~  105 (461)
                      +..++.|+++||++|+++.+.+.+..      +.+-.+|.+..     +++.    +..++.++|++++  +|+   .+-
T Consensus        21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~------i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~---~~i   89 (103)
T 3nzn_A           21 RGKVIMYGLSTCVWCKKTKKLLTDLG------VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE---KAI   89 (103)
T ss_dssp             CSCEEEEECSSCHHHHHHHHHHHHHT------BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT---EEE
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcC------CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC---EEE
Confidence            34578899999999999998887653      34555666531     2232    3468999999887  321   355


Q ss_pred             CCcchhHHHHHH
Q psy17502        106 GARTADAIIDVA  117 (461)
Q Consensus       106 g~~~~~~i~~~i  117 (461)
                      |..+.+.|.+++
T Consensus        90 gg~~~~~l~~~L  101 (103)
T 3nzn_A           90 VGFKEKEIRESL  101 (103)
T ss_dssp             ESCCHHHHHHHT
T ss_pred             EcCCHHHHHHHh
Confidence            667777777654

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=97.66  E-value=0.00011  Score=62.55  Aligned_cols=43  Identities=9%  Similarity=0.012  Sum_probs=37.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT  197 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~  197 (461)
                      .+++++|.|+++||+.|....+.+.++++.+++ .+.+..|+++
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d   91 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCN   91 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECc
Confidence            357999999999999999999999999999975 4888888754

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=97.66  E-value=4.9e-05  Score=58.92  Aligned_cols=60  Identities=23%  Similarity=0.434  Sum_probs=42.9

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc----hh----hHhhcCCCCccEEEEEcCCC
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE----KS----LSSSHGVTGFPTVKIFSDKR   99 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~----~~----l~~~~~i~~~P~l~~~~~g~   99 (461)
                      +++.++  ++.|+++||++|+++.+.+.+..      +.+..+|++..    ++    +.+..|+..+|+++  .+|+
T Consensus        15 ~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~if--i~g~   82 (113)
T 3rhb_A           15 TVTENT--VVIYSKTWCSYCTEVKTLFKRLG------VQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVF--VCGK   82 (113)
T ss_dssp             HHHHSS--EEEEECTTCHHHHHHHHHHHHTT------CCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEE--ETTE
T ss_pred             HHhcCC--EEEEECCCChhHHHHHHHHHHcC------CCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence            566665  67799999999999998887642      44556676642    22    55667999999984  3554

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=97.66  E-value=0.00014  Score=63.77  Aligned_cols=88  Identities=11%  Similarity=0.175  Sum_probs=66.1

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc----------------------------cHhhhhh
Q psy17502        156 DDIWLVEFF-APWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV----------------------------HQRIAGE  205 (461)
Q Consensus       156 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~----------------------------~~~l~~~  205 (461)
                      +++++|.|| +.||+.|....+.+.++++.+++ .+.+..|+++.                            ...+++.
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~  135 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  135 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence            488999999 99999999999999999999863 57777776542                            2457888


Q ss_pred             cCcc------cccEEEEEcCCCCCCcCcccccCC----CCHHHHHHHHHhh
Q psy17502        206 FNIR------GYPTIKFFSPGSRSASDAQEYNGG----RTSQDIVTWALNK  246 (461)
Q Consensus       206 ~~i~------~~P~i~~~~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~  246 (461)
                      |++.      ..|+++++.+.++   ....+.|.    .+.+++.+.|...
T Consensus       136 ygv~~~~~g~~~P~~~liD~~G~---I~~~~~g~~~~~~~~~ell~~l~~l  183 (220)
T 1zye_A          136 YGVLLEGPGLALRGLFIIDPNGV---IKHLSVNDLPVGRSVEETLRLVKAF  183 (220)
T ss_dssp             TTCEETTTTEECEEEEEECTTSB---EEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             hCCeecCCCcccceEEEECCCCE---EEEEEecCCCCCCCHHHHHHHHHHh
Confidence            9998      8999999965432   22223332    5678888877653

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=97.64  E-value=0.00018  Score=62.74  Aligned_cols=88  Identities=13%  Similarity=0.159  Sum_probs=64.8

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCcc----------------------------cHhhhh
Q psy17502        155 SDDIWLVEFF-APWCGHCKNLEPHWEKAASELE-GKVKLGAVDATV----------------------------HQRIAG  204 (461)
Q Consensus       155 ~~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~----------------------------~~~l~~  204 (461)
                      .+++++|.|+ ++||+.|....+.+.++++.++ ..+.+..|+.+.                            ..++++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            4578999999 9999999999999999999886 357777776532                            345778


Q ss_pred             hcCcc-----cccEEEEEcCCCCCCcCcccccCC----CCHHHHHHHHHh
Q psy17502        205 EFNIR-----GYPTIKFFSPGSRSASDAQEYNGG----RTSQDIVTWALN  245 (461)
Q Consensus       205 ~~~i~-----~~P~i~~~~~~~~~~~~~~~y~g~----~~~~~i~~fi~~  245 (461)
                      .|++.     ..|+.+++.+.++   ....+.|.    .+.+++.+.|..
T Consensus       131 ~ygv~~~~g~~~p~~~lID~~G~---i~~~~~~~~~~~~~~~ell~~l~~  177 (213)
T 2i81_A          131 DYNVLFDDSVSLRAFVLIDMNGI---VQHLLVNNLAIGRSVDEILRIIDA  177 (213)
T ss_dssp             HTTCEETTTEECEEEEEECTTSB---EEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HhCCccccCCcccEEEEECCCCE---EEEEEecCCCCCCCHHHHHHHHHH
Confidence            89988     7899988875532   22333332    457888877764

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=97.63  E-value=0.0003  Score=61.69  Aligned_cols=86  Identities=21%  Similarity=0.188  Sum_probs=62.5

Q ss_pred             eEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc-------------------------------hhhHhh
Q psy17502         36 VWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE-------------------------------KSLSSS   83 (461)
Q Consensus        36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~-------------------------------~~l~~~   83 (461)
                      .+|+.|++.||+.|....+.+.+++++++. .+.++.|+++..                               .++++.
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~  113 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAIL  113 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHH
Confidence            566667899999999999999999999865 477777776532                               236667


Q ss_pred             cCCC------------CccEEEEEc-CCCCCccccC----CcchhHHHHHHHHHH
Q psy17502         84 HGVT------------GFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALEAI  121 (461)
Q Consensus        84 ~~i~------------~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~~~  121 (461)
                      ||+.            .+|+++++. +|.....+.|    .++.+++...|....
T Consensus       114 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          114 LGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             TTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             hCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            7773            379999987 5544444433    356788888887654

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=97.61  E-value=0.00014  Score=63.08  Aligned_cols=43  Identities=12%  Similarity=0.097  Sum_probs=37.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDAT  197 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~  197 (461)
                      .+++++|.|+++||++|....+.+.++++.+++. +.+..|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            4579999999999999999999999999999754 888888764

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.58  E-value=0.00022  Score=63.47  Aligned_cols=85  Identities=19%  Similarity=0.285  Sum_probs=61.9

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC---------------------------------------
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA---------------------------------------  196 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~---------------------------------------  196 (461)
                      .+.+++.|+++||++|+.+.+.+.++.+.  +++.+..+..                                       
T Consensus        97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~  174 (241)
T 1v58_A           97 APVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  174 (241)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcc
Confidence            45689999999999999999998887664  4566654322                                       


Q ss_pred             -----------cccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        197 -----------TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       197 -----------~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                                 +.+..+++++||.+.|++++....+    ......|..+.+.|.++|.+.
T Consensus       175 ~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G----~~~~~~G~~~~~~L~~~l~~~  231 (241)
T 1v58_A          175 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKEN----TLQQAVGLPDQKTLNIIMGNK  231 (241)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTT----EEEEEESSCCHHHHHHHTTC-
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC----CEEEecCCCCHHHHHHHHHHH
Confidence                       1234467889999999999986421    334567888999988887543

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=97.58  E-value=0.00035  Score=58.15  Aligned_cols=87  Identities=10%  Similarity=0.175  Sum_probs=61.5

Q ss_pred             CCCeEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCceEEEEEeCcc-----------------------cHhhhhhcCccc
Q psy17502        155 SDDIWLVEFFAPW-CGHCKNLEPHWEKAASELEGKVKLGAVDATV-----------------------HQRIAGEFNIRG  210 (461)
Q Consensus       155 ~~~~~~v~f~~~~-c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~-----------------------~~~l~~~~~i~~  210 (461)
                      .+++++|.|+++| |++|....+.+.++++.+ ..+.+..|+.+.                       +..+++.|++..
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~  121 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYI  121 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence            3578999999999 999999999999999998 677777776542                       234666777765


Q ss_pred             ------ccEEEEEcCCCCCCcCcccccCC-----CCHHHHHHHHHh
Q psy17502        211 ------YPTIKFFSPGSRSASDAQEYNGG-----RTSQDIVTWALN  245 (461)
Q Consensus       211 ------~P~i~~~~~~~~~~~~~~~y~g~-----~~~~~i~~fi~~  245 (461)
                            .|+.+++.+.++   ....+.|.     .+.+++.+.+.+
T Consensus       122 ~~~g~~~p~~~lid~~G~---i~~~~~g~~~~~~~~~~~l~~~l~~  164 (167)
T 2jsy_A          122 KELRLLARSVFVLDENGK---VVYAEYVSEATNHPNYEKPIEAAKA  164 (167)
T ss_dssp             TTTCSBCCEEEEECTTSC---EEEEEECSBTTSCCCSHHHHHHHHH
T ss_pred             ccCCceeeEEEEEcCCCc---EEEEEecCCcCCCCCHHHHHHHHHH
Confidence                  388888865432   33334332     245777776654

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=97.57  E-value=6.1e-05  Score=63.22  Aligned_cols=60  Identities=18%  Similarity=0.206  Sum_probs=46.7

Q ss_pred             cCCCeEEEEEECCCCHhHHhh-HHHHHHHHHHcCC-ceE-EEEEecCCc---hhhHhhcCCC-CccE
Q psy17502         32 KSDEVWIVEYYAPWCGHCQSF-KDEYMKLATALKG-VVK-VGAVNADEE---KSLSSSHGVT-GFPT   91 (461)
Q Consensus        32 ~~~~~~lv~f~~~~c~~C~~~-~~~~~~~a~~~~~-~v~-~~~vd~~~~---~~l~~~~~i~-~~P~   91 (461)
                      +.++.+|+.|++.||++|+.. .|.|.++++++++ .+. +..|+.+..   ...++++++. .+|.
T Consensus        42 ~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~  108 (171)
T 2pwj_A           42 KDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEF  108 (171)
T ss_dssp             TTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEE
T ss_pred             CCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEE
Confidence            444578889999999999998 9999999998864 377 888887643   4467778874 6773

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=97.57  E-value=0.00025  Score=61.10  Aligned_cols=90  Identities=8%  Similarity=0.059  Sum_probs=59.8

Q ss_pred             CCCeEEEEEeCCCChh-hhhhhHHHHHHHHHhc----CceEEEEEeCcc----------------------------cHh
Q psy17502        155 SDDIWLVEFFAPWCGH-CKNLEPHWEKAASELE----GKVKLGAVDATV----------------------------HQR  201 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~-c~~~~~~~~~~a~~~~----~~i~f~~v~~~~----------------------------~~~  201 (461)
                      .+++++|.|+++||++ |....+.+.++.+.+.    +.+.+..|+++.                            ...
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            3579999999999998 9999999999877764    367777776542                            124


Q ss_pred             hhhhcCcc-ccc---------------EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        202 IAGEFNIR-GYP---------------TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       202 l~~~~~i~-~~P---------------~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +++.||+. +.|               +++++.+.+   .....+.|..+.+.+.+.|.+..
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G---~i~~~~~g~~~~~~~~~~i~~~l  178 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEG---QFVDALGRNYDEKTGVDKIVEHV  178 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTS---CEEEEECTTCCTTHHHHHHHHHH
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCC---cEEEEeCCCCCHHHHHHHHHHHH
Confidence            66778876 333               556655442   24445677766666666665543

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.55  E-value=0.00024  Score=60.69  Aligned_cols=41  Identities=20%  Similarity=0.455  Sum_probs=33.8

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEec
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNA   74 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~   74 (461)
                      .++.+|.|++.||+||+++.|.+   .++.+.+.+++.|..++.
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~   64 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHV   64 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEEC
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEec
Confidence            36899999999999999999987   688888876666665554

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=97.55  E-value=9.3e-05  Score=61.65  Aligned_cols=57  Identities=14%  Similarity=0.211  Sum_probs=44.3

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh---hHhhcCCCCcc
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS---LSSSHGVTGFP   90 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~P   90 (461)
                      .+++++|.|| +.||++|....|.+.++++++ ..+.++.|+.+....   .++++++..+|
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~  102 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLPFAQARFCGAEGIENAK  102 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCHHHHTTCTTTTTCTTEE
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHcCCCceE
Confidence            4568999999 899999999999999999999 668898898865432   34455553344

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.55  E-value=6.6e-05  Score=54.12  Aligned_cols=70  Identities=11%  Similarity=0.119  Sum_probs=49.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhh---hcCcccccEEEEEcCCCCCCcCcccccCCCCH
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAG---EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTS  236 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~---~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~  236 (461)
                      ++.|+++||++|+...+.+.+.      .+.|..+|++.++++.+   ++++.++|+++  .++     ..   -+..+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~~--~~g-----~~---~~g~~~   66 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVVI--AGD-----LS---WSGFRP   66 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEE--ETT-----EE---EESCCH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhCCCccCEEE--ECC-----EE---EecCCH
Confidence            5779999999999988887763      36777888877655443   58999999984  344     21   233567


Q ss_pred             HHHHHHHHh
Q psy17502        237 QDIVTWALN  245 (461)
Q Consensus       237 ~~i~~fi~~  245 (461)
                      +.|.+++.+
T Consensus        67 ~~l~~~l~~   75 (81)
T 1h75_A           67 DMINRLHPA   75 (81)
T ss_dssp             HHHGGGSCC
T ss_pred             HHHHHHHhc
Confidence            777666543

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.51  E-value=0.0002  Score=54.96  Aligned_cols=66  Identities=11%  Similarity=0.233  Sum_probs=48.0

Q ss_pred             ccchhHHHhcCCCeEEEEEEC-----CCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEE
Q psy17502         23 TSNFDDKVIKSDEVWIVEYYA-----PWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVK   93 (461)
Q Consensus        23 ~~~f~~~~~~~~~~~lv~f~~-----~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~   93 (461)
                      .+.+++ +++.++  ++.|+.     +||++|+++.+.+.+.      .+.+..+|++++++    +.+..|...+|++ 
T Consensus         5 ~~~~~~-~i~~~~--vvvy~~g~~~~~~Cp~C~~ak~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i-   74 (109)
T 1wik_A            5 SSGLKV-LTNKAS--VMLFMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSNWPTYPQL-   74 (109)
T ss_dssp             CCCHHH-HHTTSS--EEEEESSTTTCCCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE-
T ss_pred             HHHHHH-HhccCC--EEEEEecCCCCCCCchHHHHHHHHHHc------CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE-
Confidence            455676 666665  445677     9999999998887654      26788899988764    4556788999985 


Q ss_pred             EEcCCC
Q psy17502         94 IFSDKR   99 (461)
Q Consensus        94 ~~~~g~   99 (461)
                       |.+|+
T Consensus        75 -fi~g~   79 (109)
T 1wik_A           75 -YVRGD   79 (109)
T ss_dssp             -ECSSS
T ss_pred             -EECCE
Confidence             45664

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=97.48  E-value=0.00018  Score=61.00  Aligned_cols=61  Identities=13%  Similarity=0.201  Sum_probs=44.5

Q ss_pred             hcCCCeEEEEEECCCCHhHHh-hHHHHHHHHHHcCCc-eE-EEEEecCCc---hhhHhhcCCC-CccE
Q psy17502         31 IKSDEVWIVEYYAPWCGHCQS-FKDEYMKLATALKGV-VK-VGAVNADEE---KSLSSSHGVT-GFPT   91 (461)
Q Consensus        31 ~~~~~~~lv~f~~~~c~~C~~-~~~~~~~~a~~~~~~-v~-~~~vd~~~~---~~l~~~~~i~-~~P~   91 (461)
                      ++.+..+|+.|++.||+.|+. ..|.|.+++++++++ +. ++.|+.+..   ...++++++. .+|.
T Consensus        54 ~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~  121 (184)
T 3uma_A           54 FKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHF  121 (184)
T ss_dssp             HTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEE
T ss_pred             hCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEE
Confidence            334335566667999999999 699999999999653 77 888888753   3466677776 4553

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=97.48  E-value=0.00039  Score=60.97  Aligned_cols=88  Identities=10%  Similarity=0.153  Sum_probs=64.4

Q ss_pred             CCCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc----------------------------cHhhhh
Q psy17502        155 SDDIWLVEFFA-PWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV----------------------------HQRIAG  204 (461)
Q Consensus       155 ~~~~~~v~f~~-~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~----------------------------~~~l~~  204 (461)
                      .+++++|.|++ .||++|....+.+.++++.+++ .+.+..|.++.                            +..+++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            35789999996 9999999999999999999975 48888777653                            224667


Q ss_pred             hcCcc------cccEEEEEcCCCCCCcCcccccCC----CCHHHHHHHHHh
Q psy17502        205 EFNIR------GYPTIKFFSPGSRSASDAQEYNGG----RTSQDIVTWALN  245 (461)
Q Consensus       205 ~~~i~------~~P~i~~~~~~~~~~~~~~~y~g~----~~~~~i~~fi~~  245 (461)
                      .|++.      ..|+.+++...++   ....+.|.    ...+++.+.+..
T Consensus       148 ~ygv~~~~~g~~~P~~~lID~~G~---I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          148 AYGVFDEEDGNAFRGLFIIDPNGI---LRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HTTCBCTTTSSBCEEEEEECTTSE---EEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCeecCCCCccceEEEECCCCe---EEEEEecCCCCCCCHHHHHHHHHH
Confidence            88887      7899999975532   23333332    356777776654

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=97.45  E-value=0.00036  Score=57.77  Aligned_cols=87  Identities=9%  Similarity=0.130  Sum_probs=61.0

Q ss_pred             CCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc---------------------cHhhhhhcCccc--
Q psy17502        156 DDIWLVEFFA-PWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV---------------------HQRIAGEFNIRG--  210 (461)
Q Consensus       156 ~~~~~v~f~~-~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~---------------------~~~l~~~~~i~~--  210 (461)
                      +++++|.||+ .||+.|....+.+.++.+.+++ .+.+..|..+.                     ...+++.|++..  
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~  114 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK  114 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence            4589999997 9999999999999999998864 47777666542                     224667788776  


Q ss_pred             ----------ccEEEEEcCCCCCCcCcccccCC---CCHHHHHHHHHh
Q psy17502        211 ----------YPTIKFFSPGSRSASDAQEYNGG---RTSQDIVTWALN  245 (461)
Q Consensus       211 ----------~P~i~~~~~~~~~~~~~~~y~g~---~~~~~i~~fi~~  245 (461)
                                .|+.+++.+.++   ....+.|.   ...+++.+.+.+
T Consensus       115 ~~~~~~~~~~~p~~~lid~~G~---i~~~~~~~~~~~~~~~il~~l~~  159 (163)
T 3gkn_A          115 NMYGKQVLGIERSTFLLSPEGQ---VVQAWRKVKVAGHADAVLAALKA  159 (163)
T ss_dssp             EETTEEEEEECCEEEEECTTSC---EEEEECSCCSTTHHHHHHHHHHH
T ss_pred             ccccccccCcceEEEEECCCCe---EEEEEcCCCcccCHHHHHHHHHH
Confidence                      799999876532   23333332   345667666654

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=97.45  E-value=0.00048  Score=57.56  Aligned_cols=43  Identities=21%  Similarity=0.430  Sum_probs=35.0

Q ss_pred             CCCeEEEEEECCCCH-hHHhhHHHHHHHHHHcC---CceEEEEEecC
Q psy17502         33 SDEVWIVEYYAPWCG-HCQSFKDEYMKLATALK---GVVKVGAVNAD   75 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~-~C~~~~~~~~~~a~~~~---~~v~~~~vd~~   75 (461)
                      .+++++|.||.+||+ .|....+++.++.+.++   .++.++.|.++
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            568999999999996 79999999988888774   24777777665

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=97.44  E-value=0.00015  Score=56.16  Aligned_cols=65  Identities=18%  Similarity=0.398  Sum_probs=46.1

Q ss_pred             cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC--c-----hhhHhhcCCCCccEEEEEc
Q psy17502         24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE--E-----KSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~--~-----~~l~~~~~i~~~P~l~~~~   96 (461)
                      +.+.+ ++++++  ++.|+.+||++|+++.+.+.+.    +  +.+-.+|.+.  +     ..+.+..|...+|++++  
T Consensus         8 ~~~~~-~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~----~--i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--   76 (114)
T 3h8q_A            8 RHLVG-LIERSR--VVIFSKSYCPHSTRVKELFSSL----G--VECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--   76 (114)
T ss_dssp             HHHHH-HHHHCS--EEEEECTTCHHHHHHHHHHHHT----T--CCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--
T ss_pred             HHHHH-HhccCC--EEEEEcCCCCcHHHHHHHHHHc----C--CCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--
Confidence            44556 566665  4559999999999998888764    2  4566677764  2     23667789999999976  


Q ss_pred             CCC
Q psy17502         97 DKR   99 (461)
Q Consensus        97 ~g~   99 (461)
                      +|+
T Consensus        77 ~g~   79 (114)
T 3h8q_A           77 NKV   79 (114)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            553

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=97.44  E-value=0.00033  Score=61.73  Aligned_cols=89  Identities=17%  Similarity=0.113  Sum_probs=63.5

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc-----------------------------hhhH
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE-----------------------------KSLS   81 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~-----------------------------~~l~   81 (461)
                      .++.+++.|| +.||+.|....+.+.+++++++. .+.++.|+++..                             .+++
T Consensus        28 Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va  107 (233)
T 2v2g_A           28 GNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELA  107 (233)
T ss_dssp             CSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHH
Confidence            4447888888 89999999999999999998864 477777776531                             1356


Q ss_pred             hhcCCC------------CccEEEEEc-CCCCCccccC----CcchhHHHHHHHHHH
Q psy17502         82 SSHGVT------------GFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALEAI  121 (461)
Q Consensus        82 ~~~~i~------------~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~~~  121 (461)
                      +.||+.            .+|+++++. +|.....+.|    .++.+++...|....
T Consensus       108 ~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          108 VKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQ  164 (233)
T ss_dssp             HHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            667764            478898887 5544444332    356788888777653

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.44  E-value=0.00039  Score=59.38  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=35.6

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD  195 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~  195 (461)
                      +.++.++.|++.||++|..+.+.+.++.+.+.+++.|..+.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p   64 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLP   64 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEE
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEe
Confidence            46789999999999999999999999999987777776554

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=97.42  E-value=0.00061  Score=56.97  Aligned_cols=43  Identities=19%  Similarity=0.531  Sum_probs=36.7

Q ss_pred             CCCeEEEEEeCCCCh-hhhhhhHHHHHHHHHhcC---ceEEEEEeCc
Q psy17502        155 SDDIWLVEFFAPWCG-HCKNLEPHWEKAASELEG---KVKLGAVDAT  197 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~-~c~~~~~~~~~~a~~~~~---~i~f~~v~~~  197 (461)
                      .+++++|.|+++||+ .|....+.+.++.+.+++   .+.+..|+++
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d   78 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   78 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeC
Confidence            367899999999999 999999999999988864   3888888764

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=97.39  E-value=0.00022  Score=52.23  Aligned_cols=73  Identities=14%  Similarity=0.111  Sum_probs=49.2

Q ss_pred             eEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc----hhhHhhcCC-----CCccEEEEEcCCCCCccccC
Q psy17502         36 VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE----KSLSSSHGV-----TGFPTVKIFSDKRNPTPYQG  106 (461)
Q Consensus        36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~----~~l~~~~~i-----~~~P~l~~~~~g~~~~~y~g  106 (461)
                      ..++.|+++||++|+++...+.+.    .-.+.+..||...+    .++.+.+|.     ..+|++++  +|+.+    |
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~----~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i----~   73 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEEN----NIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHI----G   73 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHT----TCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEE----E
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHc----CCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEE----e
Confidence            347889999999999988777653    22355666666544    457788888     99999965  55322    2


Q ss_pred             CcchhHHHHHHHHH
Q psy17502        107 ARTADAIIDVALEA  120 (461)
Q Consensus       107 ~~~~~~i~~~i~~~  120 (461)
                        ..+++.+++.+.
T Consensus        74 --g~~~i~~~~~~~   85 (89)
T 3msz_A           74 --GFTELKANADKI   85 (89)
T ss_dssp             --SHHHHHHTHHHH
T ss_pred             --ChHHHHHHHHHH
Confidence              344566666554

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=97.39  E-value=0.00073  Score=56.75  Aligned_cols=85  Identities=8%  Similarity=0.059  Sum_probs=58.9

Q ss_pred             CCeEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCceEEEEEeCcc----------------------cHhhhhhcCcccc-
Q psy17502        156 DDIWLVEFFAPW-CGHCKNLEPHWEKAASELEGKVKLGAVDATV----------------------HQRIAGEFNIRGY-  211 (461)
Q Consensus       156 ~~~~~v~f~~~~-c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~----------------------~~~l~~~~~i~~~-  211 (461)
                      +++++|.|++.| |+.|....+.+.++++.  ..+.+..|+.+.                      +..+++.|++... 
T Consensus        44 gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~  121 (175)
T 1xvq_A           44 GKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIAD  121 (175)
T ss_dssp             TSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCS
T ss_pred             CCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccc
Confidence            578999999998 99999999999999887  567777776541                      2457778888766 


Q ss_pred             --------cEEEEEcCCCCCCcCcccccC-----CCCHHHHHHHHHh
Q psy17502        212 --------PTIKFFSPGSRSASDAQEYNG-----GRTSQDIVTWALN  245 (461)
Q Consensus       212 --------P~i~~~~~~~~~~~~~~~y~g-----~~~~~~i~~fi~~  245 (461)
                              |+.+++.+.++   ....+.|     ..+.+++++.+.+
T Consensus       122 ~~~~g~~~p~~~lid~~G~---I~~~~~g~~~~~~~~~~~~l~~l~~  165 (175)
T 1xvq_A          122 GPMAGLLARAIVVIGADGN---VAYTELVPEIAQEPNYEAALAALGA  165 (175)
T ss_dssp             STTTTSBCSEEEEECTTSB---EEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred             cccCCcccceEEEECCCCe---EEEEEECCCcCCCCCHHHHHHHHHh
Confidence                    78877765432   3333332     1245565555544

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=97.38  E-value=0.00014  Score=57.73  Aligned_cols=69  Identities=19%  Similarity=0.317  Sum_probs=46.8

Q ss_pred             ccchhHHHhcCCCeEEEEEECCCCHhHHhh-HHHHHHHHHHcCCceEEEEEecCCc-------hhhHhhcCCCCccEEEE
Q psy17502         23 TSNFDDKVIKSDEVWIVEYYAPWCGHCQSF-KDEYMKLATALKGVVKVGAVNADEE-------KSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        23 ~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~-~~~~~~~a~~~~~~v~~~~vd~~~~-------~~l~~~~~i~~~P~l~~   94 (461)
                      .+.+.+ ++..++  ++.|+.+||++|+++ .+.+.+...   ..+.+..+|++.+       .++.+.+|...+|+++ 
T Consensus        27 ~~~v~~-~i~~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~---~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~vf-   99 (129)
T 3ctg_A           27 VAHVKD-LIGQKE--VFVAAKTYCPYCKATLSTLFQELNV---PKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVY-   99 (129)
T ss_dssp             HHHHHH-HHHHSS--EEEEECTTCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEE-
T ss_pred             HHHHHH-HHcCCC--EEEEECCCCCchHHHHHHHHHhcCc---cCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEEE-
Confidence            445555 565555  678999999999998 776665431   1245556666543       3588889999999974 


Q ss_pred             EcCCC
Q psy17502         95 FSDKR   99 (461)
Q Consensus        95 ~~~g~   99 (461)
                       .+|+
T Consensus       100 -i~g~  103 (129)
T 3ctg_A          100 -INGK  103 (129)
T ss_dssp             -ETTE
T ss_pred             -ECCE
Confidence             3554

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=97.38  E-value=0.00034  Score=61.19  Aligned_cols=86  Identities=13%  Similarity=0.123  Sum_probs=62.1

Q ss_pred             eEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHhhcCC
Q psy17502         36 VWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSSSHGV   86 (461)
Q Consensus        36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~~~~i   86 (461)
                      .+|+.|++.||+.|....+.+.+++++++. .+.++.|+++..                            ..+++.||+
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv  113 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI  113 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence            555556899999999999999999999865 488888877632                            136677787


Q ss_pred             C------------CccEEEEEc-CCCCCcccc----CCcchhHHHHHHHHHH
Q psy17502         87 T------------GFPTVKIFS-DKRNPTPYQ----GARTADAIIDVALEAI  121 (461)
Q Consensus        87 ~------------~~P~l~~~~-~g~~~~~y~----g~~~~~~i~~~i~~~~  121 (461)
                      .            ..|+++++. +|.....+.    ..++.+++...|....
T Consensus       114 ~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          114 MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            3            378999987 554433332    2467888888887654

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.36  E-value=0.00015  Score=55.15  Aligned_cols=55  Identities=20%  Similarity=0.266  Sum_probs=40.3

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc-------HhhhhhcCcccccEEEE
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH-------QRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~-------~~l~~~~~i~~~P~i~~  216 (461)
                      .++.|+++||++|+.+.+.+.+.+..+. .  |..+|++.+       ..+.+.+++.++|++++
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~-~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~   74 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEG-L--LEFVDITATSDTNEIQDYLQQLTGARTVPRVFI   74 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTT-S--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCC-c--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEE
Confidence            3677999999999999998887654432 2  445565554       35778899999999743

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=97.31  E-value=0.00027  Score=60.92  Aligned_cols=57  Identities=14%  Similarity=0.223  Sum_probs=44.5

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh---hHhhcCCCCcc
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS---LSSSHGVTGFP   90 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~P   90 (461)
                      .+++++|.|| +.||+.|....|.+.++++++ ..+.++.|+++....   .++++++..+|
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~f~  137 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-ENTVVLCISSDLPFAQSRFCGAEGLSNVI  137 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-TTEEEEEEESSCHHHHTTCTTTTTCTTEE
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHcCCCCce
Confidence            4578999999 789999999999999999999 558888888875433   34555554455

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=97.22  E-value=0.00047  Score=57.77  Aligned_cols=57  Identities=16%  Similarity=0.228  Sum_probs=41.0

Q ss_pred             CCeE-EEEEECCCCHhHH-hhHHHHHHHHHHcCCc-eEEEE-EecCCc---hhhHhhcCCC-Ccc
Q psy17502         34 DEVW-IVEYYAPWCGHCQ-SFKDEYMKLATALKGV-VKVGA-VNADEE---KSLSSSHGVT-GFP   90 (461)
Q Consensus        34 ~~~~-lv~f~~~~c~~C~-~~~~~~~~~a~~~~~~-v~~~~-vd~~~~---~~l~~~~~i~-~~P   90 (461)
                      ++++ |+.|++.||+.|. ...|.|.+++++++++ +.++. |..+..   ...++++++. .+|
T Consensus        43 gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp  107 (173)
T 3mng_A           43 GKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVR  107 (173)
T ss_dssp             TSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCE
T ss_pred             CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceE
Confidence            4444 4455599999999 5899999999998653 66554 776642   4567777876 466

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.20  E-value=0.013  Score=51.89  Aligned_cols=43  Identities=14%  Similarity=0.260  Sum_probs=34.4

Q ss_pred             CCCeEEEEEe-CCCChhhh-hhhHHHHHHHHHhcC-ce-EEEEEeCc
Q psy17502        155 SDDIWLVEFF-APWCGHCK-NLEPHWEKAASELEG-KV-KLGAVDAT  197 (461)
Q Consensus       155 ~~~~~~v~f~-~~~c~~c~-~~~~~~~~~a~~~~~-~i-~f~~v~~~  197 (461)
                      .+++++|.|| +.||+.|. ...+.+.++++.+++ .+ .+..|..+
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d   78 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVN   78 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcC
Confidence            3568888998 99999999 899999999988863 46 66666543

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=97.20  E-value=0.0028  Score=54.48  Aligned_cols=86  Identities=22%  Similarity=0.337  Sum_probs=64.0

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHH-HHHHHHc--CCceEEEEEecCCch--------------------------------
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEY-MKLATAL--KGVVKVGAVNADEEK--------------------------------   78 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~-~~~a~~~--~~~v~~~~vd~~~~~--------------------------------   78 (461)
                      .++.+|.|+...|++|+++.+.+ ..+.+.+  .+++.|...+..-..                                
T Consensus        29 a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~~~s~~Aa~aa~a~~~~~~~~f~~~~~aLf~~~  108 (202)
T 3gha_A           29 APVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEKQ  108 (202)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHC
T ss_pred             CCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCccchhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Confidence            46899999999999999999886 5666666  356777765543110                                


Q ss_pred             ---------------------------------------------hhHhhcCCCCccEEEEEcCCCCCccccCCcchhHH
Q psy17502         79 ---------------------------------------------SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI  113 (461)
Q Consensus        79 ---------------------------------------------~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i  113 (461)
                                                                   ++++++||.++|++++  +|+   .+.|..+.+.+
T Consensus       109 ~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~gV~gtPtfvv--nG~---~~~G~~~~e~l  183 (202)
T 3gha_A          109 PDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKMNIQATPTIYV--NDK---VIKNFADYDEI  183 (202)
T ss_dssp             CSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHTTCCSSCEEEE--TTE---ECSCTTCHHHH
T ss_pred             ccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCcCCEEEE--CCE---EecCCCCHHHH
Confidence                                                         1455679999999988  553   36788999999


Q ss_pred             HHHHHHHHhhh
Q psy17502        114 IDVALEAIRQK  124 (461)
Q Consensus       114 ~~~i~~~~~~~  124 (461)
                      .+.|.+.....
T Consensus       184 ~~~i~~~~~~~  194 (202)
T 3gha_A          184 KETIEKELKGK  194 (202)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99988876543

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.17  E-value=0.0011  Score=56.69  Aligned_cols=43  Identities=35%  Similarity=0.482  Sum_probs=37.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT  197 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~  197 (461)
                      ..+++++.|+++||++|..+.+.+.++++.+.+++.|..++..
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            4678999999999999999999999999998777888887653

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.16  E-value=0.011  Score=49.39  Aligned_cols=128  Identities=11%  Similarity=0.012  Sum_probs=81.1

Q ss_pred             chhHHHHHHHHHHhhhhcCCCCCCCCCCCCceeEcChhhhhhhh----hcCCCeEEEEEeCCCChhhhhhhHH-H--HHH
Q psy17502        109 TADAIIDVALEAIRQKVKGGKSGGRKGSSKAVVELTDSNFEKLV----YNSDDIWLVEFFAPWCGHCKNLEPH-W--EKA  181 (461)
Q Consensus       109 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~----~~~~~~~~v~f~~~~c~~c~~~~~~-~--~~~  181 (461)
                      ..++...|+.......-.         ..+....-+-++..+..    .++.+..+|+++++||..|..+... |  .++
T Consensus        13 p~~~~~~F~~~f~~~yg~---------~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V   83 (178)
T 2ec4_A           13 EGDALLQFTAEFSSRYGD---------CHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESI   83 (178)
T ss_dssp             HHHHHHHHHHHHHHHHCS---------CCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHH
T ss_pred             hHHHHHHHHHHHHHHhCC---------CCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHH
Confidence            345677777776554411         12233333333333333    4568899999999999998887632 2  235


Q ss_pred             HHHhcCceEEEEEeCcccH---------------hhhh---hcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHH
Q psy17502        182 ASELEGKVKLGAVDATVHQ---------------RIAG---EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWA  243 (461)
Q Consensus       182 a~~~~~~i~f~~v~~~~~~---------------~l~~---~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi  243 (461)
                      .+.++.++.+...|.+...               .++.   .+++.++|++.+....+..........|..+.+++..-+
T Consensus        84 ~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L  163 (178)
T 2ec4_A           84 VSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRL  163 (178)
T ss_dssp             HHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHH
T ss_pred             HHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHH
Confidence            5556567777777876544               2343   389999999999865421112345578999999888776


Q ss_pred             Hh
Q psy17502        244 LN  245 (461)
Q Consensus       244 ~~  245 (461)
                      ..
T Consensus       164 ~~  165 (178)
T 2ec4_A          164 MA  165 (178)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=97.14  E-value=0.0017  Score=53.46  Aligned_cols=74  Identities=9%  Similarity=0.055  Sum_probs=50.0

Q ss_pred             CeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc---------------------cHhhhhhcCccccc--
Q psy17502        157 DIWLVEFF-APWCGHCKNLEPHWEKAASELEGKVKLGAVDATV---------------------HQRIAGEFNIRGYP--  212 (461)
Q Consensus       157 ~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~---------------------~~~l~~~~~i~~~P--  212 (461)
                      ++++|.|| +.||+.|....+.+.++.+.+++.-.+..|..+.                     +..+++.|++...|  
T Consensus        36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~  115 (159)
T 2a4v_A           36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS  115 (159)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred             CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccC
Confidence            46788887 8999999999999999999886421555554432                     23467788888778  


Q ss_pred             ----EEEEEcCCCCCCcCcccccCCC
Q psy17502        213 ----TIKFFSPGSRSASDAQEYNGGR  234 (461)
Q Consensus       213 ----~i~~~~~~~~~~~~~~~y~g~~  234 (461)
                          +.+++++|    .....+.|..
T Consensus       116 g~~~~~~li~~G----~i~~~~~g~~  137 (159)
T 2a4v_A          116 GSIRSHFIFVDG----KLKFKRVKIS  137 (159)
T ss_dssp             CBCCEEEEEETT----EEEEEEESCC
T ss_pred             CccceEEEEcCC----EEEEEEccCC
Confidence                44444655    2344455543

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=97.12  E-value=0.0051  Score=53.83  Aligned_cols=40  Identities=20%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHH-HHHHHHc--CCceEEEEEe
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEY-MKLATAL--KGVVKVGAVN   73 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~-~~~a~~~--~~~v~~~~vd   73 (461)
                      .++.++.|+...|++|+++.+.+ .++.+++  .+++.+...+
T Consensus        39 A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~   81 (226)
T 3f4s_A           39 APILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRH   81 (226)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence            35789999999999999999875 6777777  4566665433

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.07  E-value=0.00056  Score=52.91  Aligned_cols=55  Identities=20%  Similarity=0.192  Sum_probs=40.7

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH-------hhhhhcCcccccEEEE
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ-------RIAGEFNIRGYPTIKF  216 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~-------~l~~~~~i~~~P~i~~  216 (461)
                      .++.|+++||++|+.+.+.+.+..... +.  |..+|++.++       ++.+.+|+.++|++++
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i   81 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKFSFKR-GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF   81 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTSCBCT-TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             CEEEEEeCCChhHHHHHHHHHHcCCCc-Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE
Confidence            467799999999999888776643221 11  6777776653       6888899999998754

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.04  E-value=0.00081  Score=49.27  Aligned_cols=52  Identities=23%  Similarity=0.408  Sum_probs=40.9

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc--ccHhhhhhc-CcccccEEEE
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT--VHQRIAGEF-NIRGYPTIKF  216 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~--~~~~l~~~~-~i~~~P~i~~  216 (461)
                      .++.|+++||++|+...+.+.+..      +.|..+|++  ..+++.+.+ ++.++|++++
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~------i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~~   61 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG------VKYTDIDASTSLRQEMVQRANGRNTFPQIFI   61 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT------CCEEEECSCHHHHHHHHHHHHSSCCSCEEEE
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC------CCcEEEECCHHHHHHHHHHhCCCCCcCEEEE
Confidence            367789999999999888877642      566777776  556778888 9999999854

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.01  E-value=0.0014  Score=48.29  Aligned_cols=69  Identities=10%  Similarity=0.131  Sum_probs=48.4

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-----cc----HhhhhhcCcccccEEEEEcCCCCCCcCcccc
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-----VH----QRIAGEFNIRGYPTIKFFSPGSRSASDAQEY  230 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-----~~----~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y  230 (461)
                      ++.|+++||++|+.....+.+..      +.+-.++++     ..    +++.+.+++.++|++++  ++     .   .
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~g------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g-----~---~   77 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREG------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GD-----K---H   77 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TT-----E---E
T ss_pred             EEEEECCCChHHHHHHHHHHHcC------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CC-----E---E
Confidence            56788999999999888777653      333345544     23    56667889999999887  33     1   2


Q ss_pred             cCCCCHHHHHHHHH
Q psy17502        231 NGGRTSQDIVTWAL  244 (461)
Q Consensus       231 ~g~~~~~~i~~fi~  244 (461)
                      -|..+.+.|.+++.
T Consensus        78 i~G~~~~~l~~~l~   91 (92)
T 3ic4_A           78 VLGYNEEKLKELIR   91 (92)
T ss_dssp             EESCCHHHHHHHHH
T ss_pred             EeCCCHHHHHHHhc
Confidence            34468888888874

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=96.99  E-value=0.0013  Score=49.26  Aligned_cols=56  Identities=11%  Similarity=0.106  Sum_probs=41.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhc-----CcccccEEEE
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF-----NIRGYPTIKF  216 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~-----~i~~~P~i~~  216 (461)
                      ++...++.|.++||++|+.....+.+..      +.|..+|++.+++..+.+     +..++|++++
T Consensus        13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~~------i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi   73 (99)
T 3qmx_A           13 AVSAKIEIYTWSTCPFCMRALALLKRKG------VEFQEYCIDGDNEAREAMAARANGKRSLPQIFI   73 (99)
T ss_dssp             CCCCCEEEEECTTCHHHHHHHHHHHHHT------CCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEE
T ss_pred             cCCCCEEEEEcCCChhHHHHHHHHHHCC------CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEE
Confidence            4455677899999999999998887753      556677777765544433     8888998743

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=96.99  E-value=0.0061  Score=52.86  Aligned_cols=42  Identities=17%  Similarity=0.188  Sum_probs=35.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT  197 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~  197 (461)
                      .+++++|.|+++||+.|. ..+.+.++.+++++ .+.+..|.|+
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            467999999999999998 78999999999975 4788777653

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.96  E-value=0.0011  Score=52.55  Aligned_cols=63  Identities=14%  Similarity=0.212  Sum_probs=43.1

Q ss_pred             hhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc---H----hhhhhcCcccccEEEE
Q psy17502        145 DSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH---Q----RIAGEFNIRGYPTIKF  216 (461)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~---~----~l~~~~~i~~~P~i~~  216 (461)
                      .+.+.+.+ ..+.  ++.|+++||++|+.+.+.+.++.      +.|..+|++.+   +    ++.+.+++.++|++++
T Consensus        17 ~~~~~~~i-~~~~--vvvf~~~~Cp~C~~~~~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i   86 (130)
T 2cq9_A           17 VNQIQETI-SDNC--VVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV   86 (130)
T ss_dssp             HHHHHHHH-HHSS--EEEEECSSCSHHHHHHHHHHHHT------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEE
T ss_pred             HHHHHHHH-cCCc--EEEEEcCCChHHHHHHHHHHHcC------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEE
Confidence            34455543 3333  34499999999999999888753      34555666544   3    3778899999999853

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=96.94  E-value=0.00052  Score=53.44  Aligned_cols=53  Identities=15%  Similarity=0.187  Sum_probs=39.5

Q ss_pred             EEEEeCCCChhhhhh-hHHHHHHHHHhcCceEEEEEeCcccH-------hhhhhcCcccccEEE
Q psy17502        160 LVEFFAPWCGHCKNL-EPHWEKAASELEGKVKLGAVDATVHQ-------RIAGEFNIRGYPTIK  215 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~-~~~~~~~a~~~~~~i~f~~v~~~~~~-------~l~~~~~i~~~P~i~  215 (461)
                      ++.|+++||++|+.. .+.+.+...   ..+.|..+|++.++       ++.+.+|+.++|+++
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~---~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~vf   87 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV---PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIY   87 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEE
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC---CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEEE
Confidence            566999999999988 766655431   23777788877653       578889999999873

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=96.90  E-value=0.0062  Score=50.68  Aligned_cols=92  Identities=10%  Similarity=0.018  Sum_probs=62.8

Q ss_pred             CCeEEEEEeCCCCh-hhhhhhHHHHHHHHHhc---CceEEEEEeCc-------------------------------ccH
Q psy17502        156 DDIWLVEFFAPWCG-HCKNLEPHWEKAASELE---GKVKLGAVDAT-------------------------------VHQ  200 (461)
Q Consensus       156 ~~~~~v~f~~~~c~-~c~~~~~~~~~~a~~~~---~~i~f~~v~~~-------------------------------~~~  200 (461)
                      +++++|.|+++||+ .|....+.+.++.+.+.   ..+.+..|.++                               ...
T Consensus        28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~  107 (170)
T 3me7_A           28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF  107 (170)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred             CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence            67899999999997 69999999999999885   34666665543                               012


Q ss_pred             hhhhhcCc---------ccccEEEEEcCCCCCCcCcccccCC-CCHHHHHHHHHhhccCC
Q psy17502        201 RIAGEFNI---------RGYPTIKFFSPGSRSASDAQEYNGG-RTSQDIVTWALNKYTEN  250 (461)
Q Consensus       201 ~l~~~~~i---------~~~P~i~~~~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~~~  250 (461)
                      .+++.||+         ...|+++++.+.++   ....|.|. .+.++|.+-|.+.....
T Consensus       108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~---i~~~~~g~~~~~~~i~~~l~~~~~~~  164 (170)
T 3me7_A          108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQ---IKDYIYGVNYNYLEFVNALRLARGEG  164 (170)
T ss_dssp             HHHHHTTCCCEEETTEEECCCEEEEECTTSB---EEEEEESSSCCHHHHHHHHHHHTTCS
T ss_pred             HHHHHCCeEEecCCCccccCceEEEECCCCe---EEEEEeCCCCCHHHHHHHHHHhhccc
Confidence            34444442         33467777765532   33345664 78999999888776433

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=96.88  E-value=0.0048  Score=51.86  Aligned_cols=87  Identities=7%  Similarity=0.110  Sum_probs=57.3

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc---------------------cHhhhhhcCccc--
Q psy17502        156 DDIWLVEFF-APWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV---------------------HQRIAGEFNIRG--  210 (461)
Q Consensus       156 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~---------------------~~~l~~~~~i~~--  210 (461)
                      +++++|.|+ +.||+.|....+.+.++.+.+++ .+.+..|..+.                     ...+++.|++..  
T Consensus        51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~  130 (179)
T 3ixr_A           51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEK  130 (179)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccc
Confidence            457888887 99999999999999999999875 47776665542                     223566677643  


Q ss_pred             ----------ccEEEEEcCCCCCCcCcccccC---CCCHHHHHHHHHh
Q psy17502        211 ----------YPTIKFFSPGSRSASDAQEYNG---GRTSQDIVTWALN  245 (461)
Q Consensus       211 ----------~P~i~~~~~~~~~~~~~~~y~g---~~~~~~i~~fi~~  245 (461)
                                .|+.+++.+.++   ....+.+   ....+++.+.+.+
T Consensus       131 ~~~g~~~~~~~p~~~lID~~G~---I~~~~~~~~~~~~~~~il~~l~~  175 (179)
T 3ixr_A          131 TMYGRQVIGIERSTFLIGPTHR---IVEAWRQVKVPGHAEEVLNKLKA  175 (179)
T ss_dssp             CCC--CEEEECCEEEEECTTSB---EEEEECSCCSTTHHHHHHHHHHH
T ss_pred             cccCcccCCcceEEEEECCCCE---EEEEEcCCCCCCCHHHHHHHHHH
Confidence                      477778765432   2223333   2345666666643

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=96.88  E-value=0.00044  Score=52.37  Aligned_cols=29  Identities=21%  Similarity=0.293  Sum_probs=24.2

Q ss_pred             CccEEEEEecCcchhhhhchhHHHHHHHH
Q psy17502        428 DEVWIVEYYAPWCGHCQSFKDEYMKLATA  456 (461)
Q Consensus       428 ~kdvlv~fyapwC~~Ck~l~p~~~~la~~  456 (461)
                      ++..++.|++|||++|+++++.+++++-.
T Consensus        20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~~i~   48 (103)
T 3nzn_A           20 DRGKVIMYGLSTCVWCKKTKKLLTDLGVD   48 (103)
T ss_dssp             CCSCEEEEECSSCHHHHHHHHHHHHHTBC
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCCC
Confidence            45567779999999999999999988643

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=96.88  E-value=0.0018  Score=49.08  Aligned_cols=62  Identities=18%  Similarity=0.299  Sum_probs=42.7

Q ss_pred             hhhhhhhhcCCCeEEEEEeC-----CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh----hhhhcCcccccEEEE
Q psy17502        146 SNFEKLVYNSDDIWLVEFFA-----PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR----IAGEFNIRGYPTIKF  216 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~v~f~~-----~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~----l~~~~~i~~~P~i~~  216 (461)
                      +.+.+.+ +.+ . ++.|+.     +||++|+...+.+.+..      +.|..+|++.++.    +...+|..++|++++
T Consensus         8 ~~~~~~i-~~~-~-vvvf~~g~~~~~~C~~C~~~~~~L~~~~------i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i   78 (105)
T 2yan_A            8 ERLKVLT-NKA-S-VMLFMKGNKQEAKCGFSKQILEILNSTG------VEYETFDILEDEEVRQGLKAYSNWPTYPQLYV   78 (105)
T ss_dssp             HHHHHHH-TSS-S-EEEEESBCSSSBCTTHHHHHHHHHHHHT------CCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred             HHHHHHh-ccC-C-EEEEEecCCCCCCCccHHHHHHHHHHCC------CCeEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence            3445543 333 3 344777     99999999888887753      6677888877655    445578889999843

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=96.86  E-value=0.0035  Score=46.11  Aligned_cols=73  Identities=21%  Similarity=0.393  Sum_probs=50.7

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhc-----CcccccEEEEEcCCCCCCcCcccccCC
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF-----NIRGYPTIKFFSPGSRSASDAQEYNGG  233 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~-----~i~~~P~i~~~~~~~~~~~~~~~y~g~  233 (461)
                      .++.|..+||++|......+.+      ..+.|-.+|++.+++..+.+     |.+++|+|++ .+|     ..   -+.
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~------~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg-----~~---l~~   69 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTA------NRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADG-----ST---LTN   69 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHH------TTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTS-----CE---EES
T ss_pred             cEEEEcCCCCHhHHHHHHHHHh------cCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCC-----EE---EeC
Confidence            4677889999999988877665      35778888888776654432     6778998765 333     11   123


Q ss_pred             CCHHHHHHHHHhh
Q psy17502        234 RTSQDIVTWALNK  246 (461)
Q Consensus       234 ~~~~~i~~fi~~~  246 (461)
                      .+.++|.+++.+.
T Consensus        70 ~~~~el~~~L~el   82 (92)
T 2lqo_A           70 PSADEVKAKLVKI   82 (92)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            4678888888764

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=96.86  E-value=0.0015  Score=52.87  Aligned_cols=62  Identities=15%  Similarity=0.243  Sum_probs=42.8

Q ss_pred             hhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc---H----hhhhhcCcccccEEEE
Q psy17502        146 SNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH---Q----RIAGEFNIRGYPTIKF  216 (461)
Q Consensus       146 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~---~----~l~~~~~i~~~P~i~~  216 (461)
                      +.+.+.+ ..+ . ++.|+++||++|+.+.+.+.++.      +.|..+|++.+   +    ++++.+++.++|++++
T Consensus        40 ~~~~~~i-~~~-~-Vvvf~~~~Cp~C~~~k~~L~~~~------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~ifi  108 (146)
T 2ht9_A           40 NQIQETI-SDN-C-VVIFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV  108 (146)
T ss_dssp             HHHHHHH-HHC-S-EEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             HHHHHHh-cCC-C-EEEEECCCChhHHHHHHHHHHcC------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEEE
Confidence            4455544 333 3 34499999999999999888753      34555666544   3    3778899999999853

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=96.86  E-value=0.0039  Score=54.41  Aligned_cols=89  Identities=12%  Similarity=0.181  Sum_probs=60.5

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhc-CceEEEEEeCccc----------------------------Hhhhh
Q psy17502        155 SDDIWLVEFF-APWCGHCKNLEPHWEKAASELE-GKVKLGAVDATVH----------------------------QRIAG  204 (461)
Q Consensus       155 ~~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~-~~i~f~~v~~~~~----------------------------~~l~~  204 (461)
                      .+++++|.|+ +.||+.|....+.+.++++.++ ..+.+..|..+..                            ..+++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            3578999999 9999999999999999998885 3566666654321                            23455


Q ss_pred             hcCc-----ccccEEEEEcCCCCCCcCcccccC----CCCHHHHHHHHHhh
Q psy17502        205 EFNI-----RGYPTIKFFSPGSRSASDAQEYNG----GRTSQDIVTWALNK  246 (461)
Q Consensus       205 ~~~i-----~~~P~i~~~~~~~~~~~~~~~y~g----~~~~~~i~~fi~~~  246 (461)
                      .|++     ...|+.+++.+.++   ....+.|    ..+.+++.+.|...
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G~---I~~~~~g~~~~~~~~~ell~~l~~L  182 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNGC---VRHQTVNDLPIGRNVQEVLRTIDSI  182 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTSB---EEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCCe---EEEEEecCCCCCCCHHHHHHHHHHH
Confidence            6676     24688888875432   2222333    25678887777643

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=96.77  E-value=0.0085  Score=51.63  Aligned_cols=42  Identities=12%  Similarity=0.030  Sum_probs=34.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT  197 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~  197 (461)
                      .+++++|.|+++||+.| ...+.+.++.+.+++ .+.+..|.++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            35799999999999999 678899999999975 4777777643

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.0023  Score=50.24  Aligned_cols=65  Identities=9%  Similarity=0.183  Sum_probs=43.8

Q ss_pred             cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc---h----hhHhhcCCCCccEEEE
Q psy17502         24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE---K----SLSSSHGVTGFPTVKI   94 (461)
Q Consensus        24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~---~----~l~~~~~i~~~P~l~~   94 (461)
                      ++|.+ +++.++  ++.|+.+||++|+++...+.+.. .+.  +.+..+|.+..   .    .+.+..|...+|.+++
T Consensus         5 ~~~~~-ii~~~~--Vvvysk~~Cp~C~~ak~lL~~~~-~~~--v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI   76 (127)
T 3l4n_A            5 KEYSL-ILDLSP--IIIFSKSTCSYSKGMKELLENEY-QFI--PNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLV   76 (127)
T ss_dssp             HHHHH-HHTSCS--EEEEECTTCHHHHHHHHHHHHHE-EEE--SCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHH-HHccCC--EEEEEcCCCccHHHHHHHHHHhc-ccC--CCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEE
Confidence            45777 677776  88899999999999988777631 111  33455555432   1    2444568899999965

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=96.66  E-value=0.0033  Score=55.79  Aligned_cols=88  Identities=9%  Similarity=0.048  Sum_probs=62.5

Q ss_pred             CC-eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc---------------------------cHhhhhhc
Q psy17502        156 DD-IWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV---------------------------HQRIAGEF  206 (461)
Q Consensus       156 ~~-~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~---------------------------~~~l~~~~  206 (461)
                      ++ ++++.|+++||+.|....+.+.+++..+++ .+.+..|+++.                           ...+++.|
T Consensus        33 GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~y  112 (249)
T 3a2v_A           33 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRL  112 (249)
T ss_dssp             TCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHH
T ss_pred             CCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHh
Confidence            44 455567899999999999999999998874 57887777643                           23577788


Q ss_pred             Ccc-------cccEEEEEcCCCCCCcCcccccCC----CCHHHHHHHHHhh
Q psy17502        207 NIR-------GYPTIKFFSPGSRSASDAQEYNGG----RTSQDIVTWALNK  246 (461)
Q Consensus       207 ~i~-------~~P~i~~~~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~  246 (461)
                      |+.       ..|+++++.+.++   ....+.|+    ++.++|.+.|...
T Consensus       113 gv~~~~~g~~~~p~~fIID~dG~---I~~~~~~~~~~gr~~~Ellr~I~al  160 (249)
T 3a2v_A          113 GLLHAESATHTVRGVFIVDARGV---IRTMLYYPMELGRLVDEILRIVKAL  160 (249)
T ss_dssp             TCCCTTCSSSCCEEEEEECTTSB---EEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCccccCCCcccceEEEECCCCe---EEEEEecCCcccchhHHHHHHHHHH
Confidence            886       7899998875532   22222232    5788888877543

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=96.63  E-value=0.0081  Score=51.14  Aligned_cols=41  Identities=29%  Similarity=0.539  Sum_probs=34.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD  195 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~  195 (461)
                      +.++.++.|+..||++|..+.+.+.++.+.+.+.+.|..+.
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p   61 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH   61 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEE
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEec
Confidence            35788999999999999999999999998887666665544

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=96.62  E-value=0.0086  Score=50.62  Aligned_cols=88  Identities=11%  Similarity=0.040  Sum_probs=58.4

Q ss_pred             CCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCccc-------------------------HhhhhhcCc
Q psy17502        156 DDIWLVEFFA-PWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVH-------------------------QRIAGEFNI  208 (461)
Q Consensus       156 ~~~~~v~f~~-~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~-------------------------~~l~~~~~i  208 (461)
                      +++++|.||+ .||+.|....+.+.++++.+++ .+.+..|..+..                         ..+++.|++
T Consensus        30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv  109 (186)
T 1n8j_A           30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  109 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCC
Confidence            5789999995 9999999999999999988863 577766654321                         124445565


Q ss_pred             c------cccEEEEEcCCCCCCcCcccccCC----CCHHHHHHHHHhh
Q psy17502        209 R------GYPTIKFFSPGSRSASDAQEYNGG----RTSQDIVTWALNK  246 (461)
Q Consensus       209 ~------~~P~i~~~~~~~~~~~~~~~y~g~----~~~~~i~~fi~~~  246 (461)
                      .      ..|+.+++.+.++   ....+.|.    .+.+++.+.|...
T Consensus       110 ~~~~~g~~~p~~~lID~~G~---i~~~~~~~~~~~~~~~~l~~~l~~l  154 (186)
T 1n8j_A          110 MREDEGLADRATFVVDPQGI---IQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             EETTTTEECEEEEEECTTSB---EEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             ccCCCCceeeEEEEECCCCe---EEEEEecCCCCCCCHHHHHHHHHHH
Confidence            4      2488888875432   23334343    3577777777543

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=96.61  E-value=0.0053  Score=49.63  Aligned_cols=81  Identities=21%  Similarity=0.346  Sum_probs=58.2

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC-------------------------------------
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA-------------------------------------  196 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~-------------------------------------  196 (461)
                      .+.+.+++.|+.++|++|+.+.+.+.++     +++++.....                                     
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~   86 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHEFEKM-----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPV   86 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHHHTTC-----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCT
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHHhhc-----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCC
Confidence            3457889999999999999998887653     3344332210                                     


Q ss_pred             ---------cccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        197 ---------TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       197 ---------~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                               +.+..+++++||.++|++++ .+|     .  .+.|..+.+.|.++|....
T Consensus        87 ~~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG-----~--~i~G~~~~~~l~~~i~~~~  138 (147)
T 3gv1_A           87 GGSICDNPVAETTSLGEQFGFNGTPTLVF-PNG-----R--TQSGYSPMPQLEEIIRKNQ  138 (147)
T ss_dssp             TCCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTS-----C--EEESCCCTTHHHHHHHHTS
T ss_pred             ccHHHHHHHHHHHHHHHHhCCCccCEEEE-ECC-----E--EeeCCCCHHHHHHHHHHHH
Confidence                     11345778899999999988 444     2  4678888899999987754

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=96.47  E-value=0.011  Score=51.24  Aligned_cols=88  Identities=13%  Similarity=0.058  Sum_probs=60.1

Q ss_pred             CCCeEEEEEECCC-CHhHH-----hhHHHHHHHHHHcCCceEEEEEecCC-----------------------chhhHhh
Q psy17502         33 SDEVWIVEYYAPW-CGHCQ-----SFKDEYMKLATALKGVVKVGAVNADE-----------------------EKSLSSS   83 (461)
Q Consensus        33 ~~~~~lv~f~~~~-c~~C~-----~~~~~~~~~a~~~~~~v~~~~vd~~~-----------------------~~~l~~~   83 (461)
                      .+++++|.||+.| |+.|.     ...+.|.+.   +.+ +.++.|+.+.                       +.++++.
T Consensus        47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~g-v~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~  122 (224)
T 3keb_A           47 SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WPH-LKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKR  122 (224)
T ss_dssp             TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CTT-SEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHHH
T ss_pred             CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cCC-CEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHHH
Confidence            3568999999888 99999     777777766   433 6666666542                       2357778


Q ss_pred             cCCCC---------ccEEEEEc-CCCCCcc-----ccCCcchhHHHHHHHHHHhhh
Q psy17502         84 HGVTG---------FPTVKIFS-DKRNPTP-----YQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        84 ~~i~~---------~P~l~~~~-~g~~~~~-----y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      ||+..         .|+.+++. +|.....     +.+..+.+++++.+.......
T Consensus       123 yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~~  178 (224)
T 3keb_A          123 YGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQQA  178 (224)
T ss_dssp             TTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHHHHC
T ss_pred             hCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhhhcc
Confidence            88864         79999887 5543322     234566788888887765443

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=96.47  E-value=0.0051  Score=43.89  Aligned_cols=68  Identities=10%  Similarity=0.144  Sum_probs=45.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc----HhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCC
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH----QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT  235 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~----~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~  235 (461)
                      ++.|+++||++|+...+.+.+.      .+.|..+|++.+    .++.+.+++.++|++++  +|     ..  . |  .
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~~--~g-----~~--i-~--g   64 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DA-----QH--I-G--G   64 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TT-----EE--E-E--S
T ss_pred             EEEEECCCChhHHHHHHHHHHC------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CC-----EE--E-e--C
Confidence            5678999999999988877764      255666666553    23566789999999853  44     11  1 1  2


Q ss_pred             HHHHHHHHHh
Q psy17502        236 SQDIVTWALN  245 (461)
Q Consensus       236 ~~~i~~fi~~  245 (461)
                      .++|.+++..
T Consensus        65 ~~~i~~~~~~   74 (82)
T 1fov_A           65 YDDLYALDAR   74 (82)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
Confidence            4677777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	461
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	3e-23
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	2e-19
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	4e-06
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	2e-22
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	5e-17
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	2e-09
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	9e-20
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	2e-18
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	1e-06
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	7e-19
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	5e-18
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	5e-06
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	1e-18
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	6e-17
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	5e-05
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	8e-18
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	2e-15
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	4e-04
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	8e-18
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	2e-16
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	1e-06
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	3e-17
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	3e-16
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	4e-17
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	7e-16
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	7e-05
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	2e-15
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	2e-13
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	2e-04
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	3e-14
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	4e-14
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	7e-04
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	4e-14
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	3e-12
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	8e-14
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	7e-13
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	0.002
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	2e-13
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	3e-13
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	1e-12
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	1e-09
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	2e-12
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	2e-10
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	3e-12
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	2e-10
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	3e-11
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	6e-09
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	1e-09
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	3e-08
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	4e-05
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	5e-09
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	2e-08
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	1e-08
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	3e-05
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	2e-08
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	6e-06
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	3e-08
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	7e-08
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	3e-08
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	2e-07
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	4e-08
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	1e-07
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	4e-08
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	1e-06
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	4e-08
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	3e-07
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	4e-08
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	5e-06
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	2e-07
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	4e-06
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	3e-07
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	5e-06
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	7e-07
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	1e-05
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	1e-04
d1z5ye1	136	c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG	0.002
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	0.004

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.4 bits (229), Expect = 3e-23
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHC-----KNLEPHWEKAASELEGKVKL 191
           +K  + L    F K++       LV+F   +         K L  +   +   L  +V +
Sbjct: 3   TKGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGI 61

Query: 192 GAVDATVHQRIAGEF--NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
                 ++  ++ ++  +   YP    F        +   Y+G      I  W
Sbjct: 62  SDYGDKLNMELSEKYKLDKESYPVFYLFRD--GDFENPVPYSGAVKVGAIQRW 112

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.6 bits (201), Expect = 2e-19
 Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 10/109 (9%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCG-----HCQSFKDEYMKLATALKGVVKVG 70
              + L T  F  KVI   +  +V++   +         +   +        L   V + 
Sbjct: 4   KGALPLDTVTFY-KVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGIS 62

Query: 71  AVNADEEKSLSSS--HGVTGFPTVKIF--SDKRNPTPYQGARTADAIID 115
                    LS         +P   +F   D  NP PY GA    AI  
Sbjct: 63  DYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQR 111

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 416 DEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           D   F  KVI   +  +V++   +    +  +DE+ +LA    
Sbjct: 10  DTVTFY-KVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSA 49

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 89.7 bits (222), Expect = 2e-22
 Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 14/115 (12%)

Query: 138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAA---SELEGKVKLGAV 194
              V+L + +FEK V       +V+F        K+    +   +    +    + +  V
Sbjct: 2   TGCVDLDELSFEKTV-ERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATV 58

Query: 195 DATV-----HQRIAGEF--NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
                    ++ +   +  + + +P+I  F   +         +   T  ++  +
Sbjct: 59  GVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQ-LPSHVDVTLDNLKAF 112

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 74.7 bits (183), Expect = 5e-17
 Identities = 12/113 (10%), Positives = 35/113 (30%), Gaps = 16/113 (14%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK---GVVKVGAV 72
           +  + L   +F+ K ++     +V++        +   + +   + +       + +  V
Sbjct: 2   TGCVDLDELSFE-KTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATV 58

Query: 73  NAD-------EEKSLSSSHGVTGFPTVKIF---SDKRNPTPYQGARTADAIID 115
                     +            FP++ +F   +D+    P     T D +  
Sbjct: 59  GVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKA 111

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 416 DEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK 458
           DE +F+ K ++     +V++        +   + +   + +  
Sbjct: 8   DELSFE-KTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAH 47

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 82.1 bits (202), Expect = 9e-20
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
           S  ++ LTD +F+  V  +D   LV+F+A WCG CK + P  ++ A E +GK+ +  ++ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
             +   A ++ IRG PT+  F  G      A    G  +   +  +
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEV----AATKVGALSKGQLKEF 102

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 78.3 bits (192), Expect = 2e-18
 Identities = 26/99 (26%), Positives = 50/99 (50%)

Query: 17  DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE 76
            +I LT  +FD  V+K+D   +V+++A WCG C+       ++A   +G + V  +N D+
Sbjct: 3   KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 62

Query: 77  EKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
               +  +G+ G PT+ +F +        GA +   + +
Sbjct: 63  NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 101

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
           +FD  V+K+D   +V+++A WCG C+       ++A
Sbjct: 11  SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 79.9 bits (196), Expect = 7e-19
 Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA 196
           SK V+ +TD+ FE  V  ++   LV F+A WCG C+ + P    AA+    ++K+  ++ 
Sbjct: 1   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 60

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
             +     ++ + G P ++                G  +   ++++ L+ +
Sbjct: 61  DPNPTTVKKYKVEGVPALRLVKGEQI----LDSTEGVISKDKLLSF-LDTH 106

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 77.5 bits (190), Expect = 5e-18
 Identities = 22/100 (22%), Positives = 46/100 (46%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
             VI +T + F+ +V+K+++  +V ++A WCG CQ         A      +KV  +  D
Sbjct: 2   KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEID 61

Query: 76  EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
              +    + V G P +++   ++     +G  + D ++ 
Sbjct: 62  PNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLS 101

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVYC 461
            F+ +V+K+++  +V ++A WCG CQ         A       
Sbjct: 11  EFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRL 53

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 79.5 bits (195), Expect = 1e-18
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 17/122 (13%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGH------CKNLEPHWEKAASELEGK-VKLG 192
           V+ +   N++ +     ++  + +  P           +  E   E AA  LE K V  G
Sbjct: 13  VINVNAKNYKNVF-KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFG 71

Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVP 252
            VD+     +A +  +    +I  F        +  EY+G  ++  +V + L    + + 
Sbjct: 72  LVDSEKDAAVAKKLGLTEEDSIYVFKE-----DEVIEYDGEFSADTLVEFLL----DVLE 122

Query: 253 PP 254
            P
Sbjct: 123 DP 124

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 74.9 bits (183), Expect = 6e-17
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 12  YPSY---SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGH------CQSFKDEYMKLATA 62
           +P Y     VI +   N+   V K  EV  + Y+ P           +  +      A  
Sbjct: 4   FPEYDGVDRVINVNAKNYK-NVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQV 62

Query: 63  LKGV-VKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI 121
           L+   V  G V+++++ +++   G+T   ++     +     Y G  +AD +++  L+ +
Sbjct: 63  LEDKGVGFGLVDSEKDAAVAKKLGLTEEDSI-YVFKEDEVIEYDGEFSADTLVEFLLDVL 121

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 7/46 (15%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGH------CQSFKDEYMKLATALK 458
           N+   V K  EV  + Y+ P           +  +      A  L+
Sbjct: 20  NYK-NVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLE 64

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.6 bits (190), Expect = 8e-18
 Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT- 197
           +V +L   N +++V +     LV ++APWCGHCK L P +++ A           +    
Sbjct: 13  SVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLD 72

Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIK 257
             +       I GYPTI  +  G +  S++  Y G R+   +  +       +V    + 
Sbjct: 73  HTENDVRGVVIEGYPTIVLYPGGKK--SESVVYQGSRSLDSLFDFIKENGHFDVDGKALY 130

Query: 258 QIVSEATFKE 267
           +   E   +E
Sbjct: 131 EEAQEKAAEE 140

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.6 bits (172), Expect = 2e-15
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAV-NA 74
           S V +L   N D+ V    +  +V YYAPWCGHC+     Y +LA           +   
Sbjct: 12  SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL 71

Query: 75  DEEKSLSSSHGVTGFPTVKIFSD--KRNPTPYQGARTADAIIDVALEAIRQKVKGGK 129
           D  ++      + G+PT+ ++    K     YQG+R+ D++ D   E     V G  
Sbjct: 72  DHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKA 128

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKL 453
           N D+ V    +  +V YYAPWCGHC+     Y +L
Sbjct: 21  NHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQEL 55

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 76.8 bits (188), Expect = 8e-18
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 4/105 (3%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA--VDAT 197
           V  +   N+ ++V +     L+EF+APWCGHCK L P +E+  +            +   
Sbjct: 4   VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 63

Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
                     I+G+PTIK +  G++       Y+G RT +D++ +
Sbjct: 64  DATANDVPDEIQGFPTIKLYPAGAK--GQPVTYSGSRTVEDLIKF 106

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 72.9 bits (178), Expect = 2e-16
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA--VN 73
             V  +   N+++ V+   +  ++E+YAPWCGHC++   +Y +L              + 
Sbjct: 2   GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIA 61

Query: 74  ADEEKSLSSSHGVTGFPTVKIFSD--KRNPTPYQGARTADAIID 115
             +  +      + GFPT+K++    K  P  Y G+RT + +I 
Sbjct: 62  KVDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIK 105

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 419 NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKVYC 461
           N+++ V+   +  ++E+YAPWCGHC++   +Y +L        
Sbjct: 11  NYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSE 53

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 75.2 bits (184), Expect = 3e-17
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
           A + LTD+NF++ +   D   LV+F+A WCG C+ + P  E+ A     KV +  ++   
Sbjct: 1   ATMTLTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE 59

Query: 199 HQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
           +     +F I   PT+  F  G       ++  G +  + +   
Sbjct: 60  NPETTSQFGIMSIPTLILFKGGEP----VKQLIGYQPKEQLEAQ 99

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 72.1 bits (176), Expect = 3e-16
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
            + LT +NF  + I+ D+  +V+++A WCG C+       + A A    V V  +N DE 
Sbjct: 2   TMTLTDANFQ-QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60

Query: 78  KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIR 122
              +S  G+   PT+ +F          G +  + +     + ++
Sbjct: 61  PETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 74.6 bits (182), Expect = 4e-17
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
               + D  F+ +V  S    LV+F+APWCG C+ + P  ++ A E + K+K   ++   
Sbjct: 2   EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61

Query: 199 HQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
              +A E+ IR  PTI  F  G +         G      IV   + KY
Sbjct: 62  SPNVASEYGIRSIPTIMVFKGGKKCE----TIIGAVPKATIVQT-VEKY 105

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 71.1 bits (173), Expect = 7e-16
 Identities = 24/98 (24%), Positives = 46/98 (46%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
              +    F + V++S    +V+++APWCG C+       ++A   K  +K   +N DE 
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDES 62

Query: 78  KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
            +++S +G+   PT+ +F   +      GA     I+ 
Sbjct: 63  PNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQ 100

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 39.9 bits (92), Expect = 7e-05
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 416 DEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKL 453
           ++  F + V++S    +V+++APWCG C+       ++
Sbjct: 7   NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEI 44

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 2e-15
 Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 7/112 (6%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK---VKLGAVDA 196
           V+ L  SNF + +  +    LVEF+APWCGHCK L P + KAA +L+ +   ++L  VDA
Sbjct: 9   VLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA 67

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYT 248
           T    +A ++ +RGYPTIKFF  G    +  +EY  GR + DIV W L K T
Sbjct: 68  TEESDLAQQYGVRGYPTIKFFRNGDT--ASPKEYTAGREADDIVNW-LKKRT 116

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 2e-13
 Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 6/105 (5%)

Query: 16  SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQ---SFKDEYMKLATALKGVVKVGAV 72
             V+ L  SNF +  + + +  +VE+YAPWCGHC+       +      A    +++  V
Sbjct: 7   DHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65

Query: 73  NADEEKSLSSSHGVTGFPTVKIFSD--KRNPTPYQGARTADAIID 115
           +A EE  L+  +GV G+PT+K F +    +P  Y   R AD I++
Sbjct: 66  DATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVN 110

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 9/56 (16%)

Query: 396 ELPQEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYM 451
           + P+EED       +  L K  F    + + + +  +VE+YAPWCGHC++   EY 
Sbjct: 1   DAPEEED------HVLVLRKSNF---AEALAAHKYLLVEFYAPWCGHCKALAPEYA 47

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 66.5 bits (161), Expect = 3e-14
 Identities = 25/98 (25%), Positives = 47/98 (47%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
           V  +  S++ + V++S+   +V+++APWCG C+       +LA    G + V  +N DE 
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 60

Query: 78  KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
             +++ + +   PTV  F +        GA     + D
Sbjct: 61  PGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTD 98

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 66.1 bits (160), Expect = 4e-14
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)

Query: 140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH 199
           V ++ DS++++ V  S+   +V+F+APWCG CK + P  ++ A E  GK+ +  ++    
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 60

Query: 200 QRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
             IA ++NIR  PT+ FF  G R     +   G      +    + KY
Sbjct: 61  PGIATQYNIRSIPTVLFFKNGER----KESIIGAVPKSTLTDS-IEKY 103

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 9/37 (24%), Positives = 23/37 (62%)

Query: 416 DEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMK 452
           ++ ++ + V++S+   +V+++APWCG C+       +
Sbjct: 5   NDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDE 41

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 67.0 bits (163), Expect = 4e-14
 Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 9/125 (7%)

Query: 133 RKGSSKAVVELTDSNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKV-K 190
           ++  ++    +++S  +  +  + D + L+           +      +   E      +
Sbjct: 12  QRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQ 71

Query: 191 LGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTEN 250
           +   D    + I   F +  +P    F       +     NG     +++   +    E 
Sbjct: 72  VAIADLEQSEAIGDRFGVFRFPATLVF----TGGNYRGVLNGIHPWAELINL-MRGLVE- 125

Query: 251 VPPPE 255
            P  E
Sbjct: 126 -PQQE 129

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 61.6 bits (149), Expect = 3e-12
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 21  LTTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVV-KVGAVNADEEK 78
           ++ S  DD + ++ D V ++                  +L         +V   + ++ +
Sbjct: 22  VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE 81

Query: 79  SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
           ++    GV  FP   +F+         G      +I+
Sbjct: 82  AIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELIN 118

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.7 bits (159), Expect = 8e-14
 Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 5/112 (4%)

Query: 139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL-EGKVKLGAVDAT 197
           AVV+L   +F + +  S D+ L EFFAPWCGHCKN+ P + KAA  L E  + L  +D T
Sbjct: 11  AVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT 69

Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTE 249
            +Q +  E NI G+P++K F       +++ +Y G RT++ IV + + K ++
Sbjct: 70  ENQDLCMEHNIPGFPSLKIFKNS--DVNNSIDYEGPRTAEAIVQF-MIKQSQ 118

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.0 bits (152), Expect = 7e-13
 Identities = 39/108 (36%), Positives = 66/108 (61%), Gaps = 4/108 (3%)

Query: 11  LYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATAL-KGVVKV 69
           + P  S V+KL T +F++  I+S ++ + E++APWCGHC++   EY+K A  L +  + +
Sbjct: 5   VAPEDSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITL 63

Query: 70  GAVNADEEKSLSSSHGVTGFPTVKIFSD--KRNPTPYQGARTADAIID 115
             ++  E + L   H + GFP++KIF +    N   Y+G RTA+AI+ 
Sbjct: 64  AQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQ 111

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 399 QEEDIDLSDVDLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYM 451
           Q+E +   D  +  L  D F   ++ I+S ++ + E++APWCGHC++   EY+
Sbjct: 1   QQEAVAPEDSAVVKLATDSF---NEYIQSHDLVLAEFFAPWCGHCKNMAPEYV 50

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 64.2 bits (156), Expect = 2e-13
 Identities = 14/112 (12%), Positives = 35/112 (31%), Gaps = 6/112 (5%)

Query: 133 RKGSSKAVVELTDSNFEKLVYNSDD-IWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVK 190
           ++  ++    +  S  +  +    D + L+           +      +   E      +
Sbjct: 6   QRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQ 65

Query: 191 LGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
           +   D    + I   FN+R +P    F+ G          +G     +++T 
Sbjct: 66  VAVADLEQSEAIGDRFNVRRFPATLVFTDGKL----RGALSGIHPWAELLTL 113

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 64.2 bits (156), Expect = 3e-13
 Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 2/97 (2%)

Query: 21  LTTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVV-KVGAVNADEEK 78
           +  S  DD + +  D V ++                  +L         +V   + ++ +
Sbjct: 16  VEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSE 75

Query: 79  SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
           ++     V  FP   +F+D +      G      ++ 
Sbjct: 76  AIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLT 112

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 1e-12
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
           + ++   D + ++ F   W   C  ++      A +++    +  VD T        + +
Sbjct: 15  QAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL 74

Query: 209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPE 255
               T+ FF        D      G  + + + WA+    E V   E
Sbjct: 75  YDPCTVMFFFRNKHIMID-----LGTGNNNKINWAMEDKQEMVDIIE 116

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 1e-09
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 4/122 (3%)

Query: 18  VIKLTTSNFDDKVIKSDE--VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
           +  L      D+ I S+E  V ++ +   W   C    +    +A  +K    +  V+  
Sbjct: 4   LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT 63

Query: 76  EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDV--ALEAIRQKVKGGKSGGR 133
           E    +  + +    TV  F   ++     G    + I       + +   ++    G R
Sbjct: 64  EVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGAR 123

Query: 134 KG 135
           KG
Sbjct: 124 KG 125

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 60.5 bits (146), Expect = 2e-12
 Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 163 FFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSR 222
           F +P C +C       ++A  E   K+ +  +D  V +  A E+ +   P I        
Sbjct: 8   FTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAINGVV-- 65

Query: 223 SASDAQEYNGGRTSQDIVTW 242
                  + G  + +++   
Sbjct: 66  ------RFVGAPSREELFEA 79

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 54.7 bits (131), Expect = 2e-10
 Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 36  VWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF 95
           V I  + +P C +C    +   +        + V  ++   ++  +  +G+   P + I 
Sbjct: 3   VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN 62

Query: 96  SDKRNPTPYQGARTADAIIDVALEAIRQKVK 126
              R    + GA + + +     EAI  +++
Sbjct: 63  GVVR----FVGAPSREELF----EAINDEME 85

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 60.9 bits (147), Expect = 3e-12
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 140 VVELTDSNFEKLVYNSDD-IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV 198
           V E+    F  +V  + D   +++ F  WCG CK + P +EK A E    + L       
Sbjct: 8   VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQE 67

Query: 199 HQRIAGEFNIRGYPTIKFFSPG 220
           ++ +A E  IR  PT K     
Sbjct: 68  NKTLAKELGIRVVPTFKILKEN 89

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 16  SDVIKLTTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA 74
             V ++    F   V  + D+  +++ +  WCG C++   +Y KLA     V+ +     
Sbjct: 6   GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCN 65

Query: 75  DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQKVKGGKS 130
            E K+L+   G+   PT KI  +        GA+          + + + ++  +S
Sbjct: 66  QENKTLAKELGIRVVPTFKILKENSVVGEVTGAKY---------DKLLEAIQAARS 112

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 58.0 bits (139), Expect = 3e-11
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 8/105 (7%)

Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEK----AASELEGKVKLGAVDAT 197
            L D   + +     D+ ++ F  P C +C        K         +GK+    V+A 
Sbjct: 1   NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI 60

Query: 198 VHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
            +   A ++N+   P I     G     D  E+ G    +  +  
Sbjct: 61  EYPEWADQYNVMAVPKIVIQVNG----EDRVEFEGAYPEKMFLEK 101

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 51.5 bits (122), Expect = 6e-09
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 23  TSNFDDKVIKSDE-VWIVEYYAPWCGHCQ----SFKDEYMKLATALKGVVKVGAVNADEE 77
                  +   D+ V I+ +  P C +C           ++   A KG +    V A E 
Sbjct: 3   MDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY 62

Query: 78  KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAI 121
              +  + V   P + I  +  +   ++GA      ++  L A+
Sbjct: 63  PEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 106

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 53.4 bits (127), Expect = 1e-09
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 19  IKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD--- 75
           +++TT     + +   E          C +C+ F      +    K  +           
Sbjct: 11  LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQL 70

Query: 76  -EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
            + ++  S +G+   P     +D +       + +A  I D
Sbjct: 71  NDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKD 111

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 11/106 (10%), Positives = 30/106 (28%), Gaps = 8/106 (7%)

Query: 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD----A 196
           +E+T     +   +  +          C +C+          +E +  +     +     
Sbjct: 11  LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQL 70

Query: 197 TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
              Q     + I   P     + G  +       +   ++Q+I  +
Sbjct: 71  NDLQAFRSRYGIPTVPGFVHITDGQINV----RCDSSMSAQEIKDF 112

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 6/46 (13%), Positives = 14/46 (30%)

Query: 409 DLEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLA 454
           +++DL         + +   E          C +C+ F      + 
Sbjct: 7   NIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVV 52

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 5e-09
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 144 TDSNFEKLVYNSDD-IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           +D +F+  +  +   + +V+F    CG C  + P +   +++    V    VD    Q  
Sbjct: 8   SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVF-LEVDVHQCQGT 66

Query: 203 AGEFNIRGYPTIKFFSPG 220
           A   NI   PT +FF   
Sbjct: 67  AATNNISATPTFQFFRNK 84

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 22  TTSNFDDKVIKS-DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL 80
           +  +F  ++  +   + +V++    CG C      +    +          V+  + +  
Sbjct: 8   SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSS-MSNKYPQAVFLEVDVHQCQGT 66

Query: 81  SSSHGVTGFPTVKIFSDKRNPTPYQGARTAD--AIIDVALE 119
           ++++ ++  PT + F +K     YQGA        I   LE
Sbjct: 67  AATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQHLE 107

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 13/136 (9%)

Query: 117 ALEAIRQKVKGGKSGGRKGSSKAVVELTD-SNFEKLVYNS--DDIWLVEFFAPWCGHCKN 173
            ++ + QK+  G   G       V EL     F + +         +V  +      C  
Sbjct: 84  CMQDMHQKLSFGPRYGF------VYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDA 137

Query: 174 LEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSAS--DAQEYN 231
           L    E   +     VK   + A+        F+    PT+  +  G   ++     E  
Sbjct: 138 LNSSLEC-LAAEYPMVKFCKIRASNTGAGD-RFSSDVLPTLLVYKGGELISNFISVAEQF 195

Query: 232 GGRTSQDIVTWALNKY 247
                   V   LN+Y
Sbjct: 196 AEDFFAADVESFLNEY 211

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 13  PSYSDVIKLTT-SNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKV 69
           P Y  V +L T   F + + K       +V  Y      C +  +  ++   A   +VK 
Sbjct: 96  PRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDAL-NSSLECLAAEYPMVKF 154

Query: 70  GAVNADEEKSLSSSHGVTGFPTVKIFSD 97
             + A               PT+ ++  
Sbjct: 155 CKIRASNTG-AGDRFSSDVLPTLLVYKG 181

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
           V+    +FEK    S  + +V+F A WC  CK + P + + A +         VD    +
Sbjct: 12  VDTWKEHFEKGK-GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNV-TFLKVDVDELK 69

Query: 201 RIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
            +A E+N+   PT  F   G        +   G     + T  + K+
Sbjct: 70  AVAEEWNVEAMPTFIFLKDG-----KLVDKTVGADKDGLPTL-VAKH 110

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 42.9 bits (100), Expect = 6e-06
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 16  SDVIKL-TTSNFD---DKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
             VI   T   +    +K   S ++ +V++ A WC  C+     + +LA      V    
Sbjct: 4   GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLK 62

Query: 72  VNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIID 115
           V+ DE K+++    V   PT     D +      GA   D +  
Sbjct: 63  VDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGA-DKDGLPT 105

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 48.8 bits (115), Expect = 3e-08
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 158 IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF 217
           + +  F +P C HC   +   E+ A+E+   V++  ++   + + A E+ I   PTI   
Sbjct: 4   VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVIN 63

Query: 218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
                      E+ G  T + +V   + K 
Sbjct: 64  GDV--------EFIGAPTKEALVEA-IKKR 84

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 47.6 bits (112), Expect = 7e-08
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 35  EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI 94
           +V I  + +P C HC + K    ++A  +   V+V  +N  E    +  +G+   PT+ I
Sbjct: 3   KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI 62

Query: 95  FSDKRNPTPYQGARTADAIID 115
             D      + GA T +A+++
Sbjct: 63  NGDVE----FIGAPTKEALVE 79

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 49.0 bits (116), Expect = 3e-08
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 18  VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE 77
           V  +T+    D +I  +E+ IV+++A WCG C+     Y + +     +V    V+ DE 
Sbjct: 2   VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMV-FIKVDVDEV 60

Query: 78  KSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTAD 111
             ++    +T  PT K++ +  +     GA  + 
Sbjct: 61  SEVTEKENITSMPTFKVYKNGSSVDTLLGANDSA 94

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
           +  + + F+ ++ + +++ +V+FFA WCG CK + P +E+ +      V    VD     
Sbjct: 4   IVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMV-FIKVDVDEVS 61

Query: 201 RIAGEFNIRGYPTIKFFSPG 220
            +  + NI   PT K +  G
Sbjct: 62  EVTEKENITSMPTFKVYKNG 81

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 49.4 bits (117), Expect = 4e-08
 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 16  SDVIKLTT-SNFDDKV---IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
             VI + + + +D ++    +  +  +V++ A WCG C+     +  L+    G V    
Sbjct: 2   GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61

Query: 72  VNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA 107
           V+ D   +++ + G+T  PT  ++ D        GA
Sbjct: 62  VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGA 97

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 137 SKAVVELTDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193
              +V  + + ++  +          +V+F A WCG CK + P +E  +++  GKV    
Sbjct: 2   GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61

Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
           VD      +A    I   PT   +  G +      +   G +   +    + K+
Sbjct: 62  VDVDAVAAVAEAAGITAMPTFHVYKDGVK-----ADDLVGASQDKLKAL-VAKH 109

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 4e-08
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 18  VIKLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD 75
           V ++ +     + + +  D++ +V++ A WCG C+  K  +  L+      V    V+ D
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVD 60

Query: 76  EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTAD 111
           + + ++S   V   PT + F   +    + GA    
Sbjct: 61  DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEK 96

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 144 TDSNFEKLVYNSDD-IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI 202
           + + F++ +  + D + +V+F A WCG CK ++P +   + +    V    VD    Q +
Sbjct: 7   SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDV 65

Query: 203 AGEFNIRGYPTIKFFSPG 220
           A E  ++  PT +FF  G
Sbjct: 66  ASECEVKCMPTFQFFKKG 83

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 48.6 bits (115), Expect = 4e-08
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 149 EKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNI 208
           E++     D     +++  C +C ++       A     ++K  A+D    Q    E N+
Sbjct: 8   EQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVL-NPRIKHTAIDGGTFQNEITERNV 66

Query: 209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTW 242
            G P +             +   G  T  +IV  
Sbjct: 67  MGVPAVFVN--------GKEFGQGRMTLTEIVAK 92

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 46.3 bits (109), Expect = 3e-07
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 35  EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI 94
           +     YY+  C +C             L   +K  A++    ++  +   V G P V +
Sbjct: 16  DFEFETYYSLSCHNCPDVVQALNL-MAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV 74

Query: 95  FSDKRNPTPYQGARTADAIID 115
              +      QG  T   I+ 
Sbjct: 75  NGKEF----GQGRMTLTEIVA 91

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 4e-08
 Identities = 11/100 (11%), Positives = 23/100 (23%), Gaps = 15/100 (15%)

Query: 138 KAVVELTDSNFEKLVYNSDDIWLVEFF--------APWCGHCKNLEPHWEKAASELEGKV 189
           + V       F + V   +   +  +F          WC  C   EP   +    +    
Sbjct: 2   EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGC 61

Query: 190 KLGAVDA-------TVHQRIAGEFNIRGYPTIKFFSPGSR 222
                           +        +   PT+  +    +
Sbjct: 62  VFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQK 101

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 15/98 (15%)

Query: 15 YSDVIKLTTSNFDDKVIKSDEVWIVEYY--------APWCGHCQSFKDEYMKLATALKGV 66
          Y +V       F   V + +   I  Y+          WC  C   +    +    +   
Sbjct: 1  YEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG 60

Query: 67 VKVGAVNADEEKSL-------SSSHGVTGFPTVKIFSD 97
                   E+            +  VT  PT+  +  
Sbjct: 61 CVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGT 98

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 22  TTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL 80
             ++ D ++ K S ++ +++++A WCG C+    + ++L+T     V V  V+ DE + +
Sbjct: 12  DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDI 71

Query: 81  SSSHGVTGFPTVKIFSDKRNPTPYQGARTAD 111
           +  + ++  PT     +      + GA    
Sbjct: 72  AMEYNISSMPTFVFLKNGVKVEEFAGANAKR 102

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.4 bits (101), Expect = 4e-06
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 135 GSSKAVVELTD-SNFEKLVYNSDD-IWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLG 192
            ++  V ++ D ++ +  +  +   + +++FFA WCG CK + P   + +++    V + 
Sbjct: 2   AAAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVL 61

Query: 193 AVDATVHQRIAGEFNIRGYPTIKFFSPG 220
            VD    + IA E+NI   PT  F   G
Sbjct: 62  KVDVDECEDIAMEYNISSMPTFVFLKNG 89

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 134 KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGA 193
           +    +VV++      + + + D + +  F A WCG CK +E   EK A E         
Sbjct: 4   RARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKF-AK 62

Query: 194 VDATVHQRIAGEFNIRGYPTIKFFSPG 220
           VDA  +  I  +  +   PT      G
Sbjct: 63  VDADNNSEIVSKCRVLQLPTFIIARSG 89

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 14  SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVN 73
            Y  V+ + +      ++  D + +  + A WCG C++ +    K        VK   V+
Sbjct: 6   RYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEK-IAYEFPTVKFAKVD 64

Query: 74  ADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTAD 111
           AD    + S   V   PT  I    +      GA    
Sbjct: 65  ADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGM 102

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.6 bits (107), Expect = 7e-07
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 16  SDVIKLTT-SNFDD---KVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGA 71
             VI   T   +++   K  +S  + +V++ A WCG C+ F   +          V    
Sbjct: 6   GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCR-FIAPFFADLAKKLPNVLFLK 64

Query: 72  VNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTAD 111
           V+ DE KS++S   +   PT     + +      GA+  +
Sbjct: 65  VDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDE 104

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 141 VELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ 200
           VE  +   +K    S  + +V+F A WCG C+ + P +   A +    V    VD    +
Sbjct: 14  VETWNEQLQKAN-ESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LPNVLFLKVDTDELK 71

Query: 201 RIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY 247
            +A ++ I+  PT  F   G        +   G    ++ +  + K+
Sbjct: 72  SVASDWAIQAMPTFMFLKEG-----KILDKVVGAKKDELQST-IAKH 112

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 4/50 (8%), Positives = 10/50 (20%), Gaps = 2/50 (4%)

Query: 160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIR 209
           L  F    C  C   +   +        +     +    +      +   
Sbjct: 19  LTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLP--ENSTWYERYKFD 66

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 7/42 (16%), Positives = 15/42 (35%)

Query: 410 LEDLPKDEFNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYM 451
           LE L      +   V+   +  ++  +A WC   ++      
Sbjct: 2   LESLDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLN 43

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 1/76 (1%)

Query: 142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR 201
            L  +  E+L        L+     WC  C+      + A       ++L  +     + 
Sbjct: 40  GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAED 98

Query: 202 IAGEFNIRGYPTIKFF 217
              +        I   
Sbjct: 99  DLRQRLALERIAIPLV 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	461
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.91
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.91
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.91
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.9
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.89
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.89
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.88
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.87
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.85
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.84
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.83
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.83
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.82
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.82
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.82
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.82
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.82
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.82
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.82
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.81
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.81
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.8
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.79
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.79
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.79
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.78
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.78
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.76
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.76
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.75
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.75
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	99.74
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.74
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.73
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.73
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.73
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.72
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.71
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.71
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.7
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.66
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.65
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.64
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.64
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.64
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.64
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.63
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.63
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.62
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.61
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.6
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.57
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.54
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.53
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.52
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.52
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.52
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.52
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	99.41
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.4
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.39
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.33
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.3
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.25
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.21
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.21
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.19
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.18
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.17
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.16
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.14
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.13
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	99.08
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.07
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.01
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.98
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.98
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.97
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.91
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.88
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.64
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.58
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.57
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.57
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.56
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.55
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.49
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.48
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.47
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.44
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.42
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.38
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.32
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.32
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.27
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.24
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.15
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.04
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.02
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.98
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	97.91
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.91
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	97.9
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.88
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	97.86
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.85
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.83
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.75
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	97.66
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.65
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.53
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	97.49
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.45
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.36
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	97.21
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.19
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.13
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.03
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.03
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.03
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	96.97
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.87
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	96.82
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.78
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	96.66
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.6
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	96.6
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	96.59
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	96.57
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	96.47
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	96.32
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.28
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	96.28
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.25
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	96.15
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	96.15
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.05
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	96.04
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.0
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	96.0
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	95.83
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	95.76
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	95.62
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	95.59
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	95.52
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.44
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	95.38
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	95.28
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	95.16
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	95.15
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	95.14
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	94.98
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	94.97
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	94.83
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	94.64
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	94.44
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	94.06
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	94.04
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	93.81
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	93.61
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	93.52
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	93.39
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	93.18
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	93.15
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	93.04
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	92.67
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	92.07
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	91.93
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	91.76
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	91.67
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	91.29
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	89.97
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	89.79
d1r5pa_	90	Circadian oscillation regulator KaiB {Cyanobacteri	89.76
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	89.7
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	88.45
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	88.28
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	87.9
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	87.81
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	86.78
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	84.78
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	82.62
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	80.58
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	80.54
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	80.25

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.91  E-value=1e-24  Score=169.14  Aligned_cols=106  Identities=21%  Similarity=0.419  Sum_probs=100.6

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      ..|++||+++|++.+++++++++|+||++||++|+++.|.|++++.++.+.+.++.||+++++++|++|+|+++||+++|
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~   81 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLV   81 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEEEEE
Confidence            46999999999986778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++|+.+.+|.|.++.+.|.+|+.+++
T Consensus        82 ~~g~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          82 KGEQILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            99988889999999999999999875

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3e-24  Score=169.28  Aligned_cols=112  Identities=34%  Similarity=0.744  Sum_probs=102.4

Q ss_pred             cccCCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCC
Q psy17502          9 HCLYPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVT   87 (461)
Q Consensus         9 ~~~~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~   87 (461)
                      .++.+..+.|++||.++|++ ++++++.+||+||+|||++|+++.|.|+++++.+.+ .+.++.|||++++++|++|+|.
T Consensus         3 ~a~~~~~s~v~~lt~~~f~~-~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~   81 (119)
T d2b5ea4           3 EAVAPEDSAVVKLATDSFNE-YIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIP   81 (119)
T ss_dssp             CSSCCTTSSCEECCTTTHHH-HHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCC
T ss_pred             CCCCCCCCccEEcCHHHHHH-HHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccc
Confidence            35667788999999999999 888899999999999999999999999999999865 5999999999999999999999


Q ss_pred             CccEEEEEcCCCCC--ccccCCcchhHHHHHHHHHH
Q psy17502         88 GFPTVKIFSDKRNP--TPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        88 ~~P~l~~~~~g~~~--~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++||+++|++|+..  ..|.|.++.++|.+|+.++.
T Consensus        82 ~~Pti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          82 GFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             SSSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             cCCeEEEEECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence            99999999987554  45899999999999999875

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.2e-24  Score=167.25  Aligned_cols=107  Identities=24%  Similarity=0.521  Sum_probs=101.3

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      ++.|++||+++|++.+++++++++|+|||+||++|+.+.|.+.+++.++.+++.++.+|+++++.+|++|+|+++||+++
T Consensus         1 s~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~   80 (108)
T d2trxa_           1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   80 (108)
T ss_dssp             CTTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEE
T ss_pred             CCCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEEE
Confidence            36799999999998677888999999999999999999999999999998899999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |++|+.+.+|.|.++.+.|.+||.+++
T Consensus        81 ~~~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          81 FKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            999988899999999999999998875

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.90  E-value=3.8e-24  Score=164.70  Aligned_cols=103  Identities=24%  Similarity=0.471  Sum_probs=98.0

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcC
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD   97 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~   97 (461)
                      |.+||+++|++.+++++++++|.|||+||++|+++.|.+.++++++.+++.++.||+++++++|++|+|+++||+++|++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~   80 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKN   80 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEEEc
Confidence            57899999999667778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCcchhHHHHHHHHH
Q psy17502         98 KRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        98 g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      |+.+.++.|.++.+.|.+|+.++
T Consensus        81 G~~v~~~~G~~~~~~l~~~i~~~  103 (104)
T d1fb6a_          81 GERKESIIGAVPKSTLTDSIEKY  103 (104)
T ss_dssp             TEEEEEEEECCCHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCHHHHHHHHHHh
Confidence            98889999999999999999876

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.89  E-value=1.3e-23  Score=162.45  Aligned_cols=104  Identities=23%  Similarity=0.465  Sum_probs=98.2

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcC
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD   97 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~   97 (461)
                      +..+|+++|++.+++++++++|.|||+||++|+.+.|.|.+++.++.+++.++.||++.++++|++|+|+++||+++|++
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~   82 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKG   82 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESS
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEEEC
Confidence            56789999999667778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCcchhHHHHHHHHHH
Q psy17502         98 KRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        98 g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      |+.+.++.|.++.+.|.+||.+++
T Consensus        83 G~~v~~~~G~~~~~~l~~~i~~~L  106 (107)
T d1dbya_          83 GKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             CeEEEEEeCCCCHHHHHHHHHHhh
Confidence            999999999999999999999874

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.89  E-value=5.6e-24  Score=163.96  Aligned_cols=102  Identities=25%  Similarity=0.492  Sum_probs=97.1

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcC
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSD   97 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~   97 (461)
                      .+.||++||++ +++++++++|+|||+||++|+.+.|.+.+++.++++++.|++|||++++++|++|+|.++||+++|++
T Consensus         2 ~i~lt~~~f~~-~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~   80 (105)
T d1nw2a_           2 TMTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKG   80 (105)
T ss_dssp             CEEECTTTHHH-HTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred             EEEECHHHHHH-HHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEEEC
Confidence            47899999999 88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCcchhHHHHHHHHH
Q psy17502         98 KRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        98 g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      |+...++.|..+.+.|.+++.+.
T Consensus        81 G~~~~~~~G~~~~~~l~~~i~~~  103 (105)
T d1nw2a_          81 GEPVKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             TEEEEEEESCCCHHHHHHHTTTT
T ss_pred             CEEEEEEECCCCHHHHHHHHHHH
Confidence            98889999999999999988754

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.88  E-value=9.2e-23  Score=161.89  Aligned_cols=109  Identities=21%  Similarity=0.347  Sum_probs=94.4

Q ss_pred             CCCCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhH------HhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhc
Q psy17502         12 YPSYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHC------QSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSH   84 (461)
Q Consensus        12 ~~~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C------~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~   84 (461)
                      +...+.|++||++||++ ++++++.++|+||+|||+||      ..+.+.++.+|+.+++ .+.|++|||++++++|++|
T Consensus         7 ~d~~~~V~~L~~~nf~~-~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~   85 (124)
T d1a8ya1           7 YDGVDRVINVNAKNYKN-VFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKL   85 (124)
T ss_dssp             CCCCCCCEECCTTTHHH-HHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTT
T ss_pred             cCCCCccEECCHHHHHH-HHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhcc
Confidence            34567799999999999 78888999999999999974      4455566667776655 4999999999999999999


Q ss_pred             CCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         85 GVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        85 ~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      +|++|||+++|++| ...+|.|.++.+.|.+|+.+.+.
T Consensus        86 ~I~~yPTi~~f~~g-~~~~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          86 GLTEEDSIYVFKED-EVIEYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             TCCSTTCEEEEESS-SEEECCSCCSHHHHHHHHHHHHS
T ss_pred             ccccCCcEEEeccC-ccEEeeCCCCHHHHHHHHHHhcC
Confidence            99999999999987 55789999999999999999873

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.8e-23  Score=163.55  Aligned_cols=108  Identities=35%  Similarity=0.702  Sum_probs=98.6

Q ss_pred             CCCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCCcc
Q psy17502         14 SYSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTGFP   90 (461)
Q Consensus        14 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~~P   90 (461)
                      ..++|+.||+++|++ ++++++++||.|||+||++|+.+.|.|.++++.+.+   ++.++.|||++++.+|++|+|.++|
T Consensus         5 ~~~~V~~l~~~~f~~-~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   83 (120)
T d1meka_           5 EEDHVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYP   83 (120)
T ss_dssp             EETTEEECCTTTHHH-HHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSS
T ss_pred             CCCCeEEcCHHHHHH-HHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCC
Confidence            356799999999998 888999999999999999999999999999999864   4999999999999999999999999


Q ss_pred             EEEEEcCCCCC--ccccCCcchhHHHHHHHHHHh
Q psy17502         91 TVKIFSDKRNP--TPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        91 ~l~~~~~g~~~--~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      |+++|++|+..  ..|.|.++.++|.+||.+++.
T Consensus        84 t~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~  117 (120)
T d1meka_          84 TIKFFRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             EEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             eEEEEECCeEeeeEEecCCCCHHHHHHHHHHhhC
Confidence            99999987554  568999999999999998863

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.85  E-value=1.9e-21  Score=150.99  Aligned_cols=105  Identities=21%  Similarity=0.471  Sum_probs=95.1

Q ss_pred             CCceEc-CccchhHHHh---cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccE
Q psy17502         16 SDVIKL-TTSNFDDKVI---KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPT   91 (461)
Q Consensus        16 ~~v~~l-~~~~f~~~~~---~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   91 (461)
                      ++|+.+ |+++|++.+.   +++++++|+||++||++|+.+.|.|+++++++++++.|+.||++++++++++|+|+++||
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt   81 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT   81 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCCE
Confidence            467888 6788888442   367899999999999999999999999999999889999999999999999999999999


Q ss_pred             EEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         92 VKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        92 l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +++|++|+.+.++.|. +.++|.+||.++.
T Consensus        82 ~~~~~~G~~v~~~~G~-~~~~l~~~i~k~~  110 (112)
T d1ep7a_          82 FHVYKDGVKADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             EEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEeCc-CHHHHHHHHHHHh
Confidence            9999999888999994 8899999999875

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=4.1e-21  Score=151.61  Aligned_cols=102  Identities=13%  Similarity=0.222  Sum_probs=90.0

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcC---CceEEEEEecCC-----chhhHhhcCC--
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALK---GVVKVGAVNADE-----EKSLSSSHGV--   86 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~---~~v~~~~vd~~~-----~~~l~~~~~i--   86 (461)
                      .+++||+.||++ ++++++.+||+||||||+||+  .|+|.++++.+.   ..+.+++|||++     ++++|++|+|  
T Consensus         3 g~v~L~~~nFd~-~v~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           3 GCVDLDELSFEK-TVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TCEECCTTTHHH-HHTTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             ceEEcChHhHHH-HHhcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            488999999999 888999999999999999999  499999998874   469999999964     5889999988  


Q ss_pred             CCccEEEEEcCCCC---CccccCCcchhHHHHHHHHHH
Q psy17502         87 TGFPTVKIFSDKRN---PTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        87 ~~~P~l~~~~~g~~---~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +++||+++|++|+.   ...|.|.++.++|.+||.++.
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~  117 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANT  117 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhc
Confidence            57999999997753   246889999999999999986

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.83  E-value=2.4e-21  Score=152.12  Aligned_cols=106  Identities=25%  Similarity=0.580  Sum_probs=90.0

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc--eEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV--VKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~--v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ..|..||.+||++.++++++++||+||+|||++|+++.|.|+++++.+.+.  ..+..+++.+...++.+++|+++||++
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~   81 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIK   81 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEE
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEE
Confidence            579999999999955678889999999999999999999999999998753  234455666666678899999999999


Q ss_pred             EEcCCCC--CccccCCcchhHHHHHHHHHH
Q psy17502         94 IFSDKRN--PTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        94 ~~~~g~~--~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +|.+|+.  ...|.|.++.++|.+||.++.
T Consensus        82 ~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~  111 (116)
T d2djja1          82 LYPAGAKGQPVTYSGSRTVEDLIKFIAENG  111 (116)
T ss_dssp             EECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             EEECCccCceEEecCCCCHHHHHHHHHHcc
Confidence            9987653  457999999999999998763

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=8.2e-21  Score=154.10  Aligned_cols=105  Identities=29%  Similarity=0.563  Sum_probs=91.4

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC---ceEEEEEecCCchhhHhhcCCCCccE
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG---VVKVGAVNADEEKSLSSSHGVTGFPT   91 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~---~v~~~~vd~~~~~~l~~~~~i~~~P~   91 (461)
                      .+.|..|+.+||++.+.+.++++||+||||||++|+++.|.|.++|+.+.+   .+.++.+|++  +++|++|+|+++||
T Consensus        11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~~~~~~~~v~~~Pt   88 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--ENDVRGVVIEGYPT   88 (140)
T ss_dssp             SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--GCCCSSCCCSSSSE
T ss_pred             CCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--chhccccccccCCe
Confidence            567999999999996567778999999999999999999999999998864   4777777765  56899999999999


Q ss_pred             EEEEcCCCCC--ccccCCcchhHHHHHHHHHH
Q psy17502         92 VKIFSDKRNP--TPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        92 l~~~~~g~~~--~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +++|++|+..  ..|.|.++.+.|.+||.+..
T Consensus        89 l~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~  120 (140)
T d2b5ea1          89 IVLYPGGKKSESVVYQGSRSLDSLFDFIKENG  120 (140)
T ss_dssp             EEEECCTTSCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred             EEEEECCEEcceeEeCCCCCHHHHHHHHHHcC
Confidence            9999987543  56899999999999999864

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=2.1e-20  Score=145.59  Aligned_cols=107  Identities=23%  Similarity=0.423  Sum_probs=94.2

Q ss_pred             CCCCCceEc-CccchhHHH---hcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCC
Q psy17502         13 PSYSDVIKL-TTSNFDDKV---IKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTG   88 (461)
Q Consensus        13 ~~~~~v~~l-~~~~f~~~~---~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~   88 (461)
                      ++.+.|+.+ |.++|++.+   .+++++++|+|||+||++|+.+.|.|+++++.+++ +.|+.||++++++++++|+|++
T Consensus         3 ~~~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~~~~~~l~~~~~V~~   81 (114)
T d1xfla_           3 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKSVASDWAIQA   81 (114)
T ss_dssp             CCCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCCCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc-cceeEEEeeeceeeccccceee
Confidence            455667777 778888744   24678999999999999999999999999999875 8999999999999999999999


Q ss_pred             ccEEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         89 FPTVKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        89 ~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +||+++|++|+.+.++.|. +.++|.+++.+++
T Consensus        82 ~Pt~~~~~~G~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          82 MPTFMFLKEGKILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             SSEEEEEETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             eEEEEEEECCEEEEEEeCc-CHHHHHHHHHHhh
Confidence            9999999999888889995 6889999998874

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.82  E-value=2e-20  Score=144.84  Aligned_cols=103  Identities=23%  Similarity=0.483  Sum_probs=92.2

Q ss_pred             CCCceEcCccchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC-chhhHhhcCCCCccE
Q psy17502         15 YSDVIKLTTSNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE-EKSLSSSHGVTGFPT   91 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~P~   91 (461)
                      .+.|.++|.++|.+ +++  ++++++|+||++||++|+.+.|.|+++++++.+ +.++.||+++ +++++++|+|+++||
T Consensus         5 ~g~v~~~~~d~f~~-~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~~~~~~l~~~~~V~~~Pt   82 (112)
T d1f9ma_           5 VGKVTEVNKDTFWP-IVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPT   82 (112)
T ss_dssp             TTSEEEECTTTHHH-HHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSSSE
T ss_pred             ceeeEEeCHHHHHH-HHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeecccccccchhhHhheeeccCCE
Confidence            45799999999999 554  356999999999999999999999999999876 7899999975 789999999999999


Q ss_pred             EEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         92 VKIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        92 l~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +++|++|+.+.++.|. +.+.+.++|+.+
T Consensus        83 ~~~~k~G~~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          83 FKILKENSVVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             EEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEeCC-CHHHHHHHHHHc
Confidence            9999999999999996 567899998875

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.82  E-value=2.1e-20  Score=144.93  Aligned_cols=102  Identities=23%  Similarity=0.400  Sum_probs=91.9

Q ss_pred             CceEc-CccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEE
Q psy17502         17 DVIKL-TTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        17 ~v~~l-~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~   95 (461)
                      .++++ +.++|.+ +++++++++|+|||+||++|+++.|.|+++++++. ++.|+.||++++++++++|||.++||+++|
T Consensus         9 ~vi~i~s~~~~~~-~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~   86 (113)
T d1r26a_           9 SVVDVYSVEQFRN-IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFIIA   86 (113)
T ss_dssp             CCEEECCHHHHHH-HHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceEEeCCHHHHHH-HHcCCCeEEEEEECCCCccchhhceeccccccccc-cccccccccccchhhHHHccccCCCEEEEE
Confidence            36666 6678888 88999999999999999999999999999999986 599999999999999999999999999999


Q ss_pred             cCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         96 SDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        96 ~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ++|+...++.|. +.+.+.+++.+.+
T Consensus        87 ~~G~~v~~~~G~-~~~~l~~~l~~~i  111 (113)
T d1r26a_          87 RSGKMLGHVIGA-NPGMLRQKLRDII  111 (113)
T ss_dssp             ETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCC-CHHHHHHHHHHHh
Confidence            999888899995 5678888887765

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.82  E-value=2.6e-20  Score=144.89  Aligned_cols=104  Identities=22%  Similarity=0.383  Sum_probs=90.6

Q ss_pred             CCCceEcCc-c----chhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCc
Q psy17502         15 YSDVIKLTT-S----NFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGF   89 (461)
Q Consensus        15 ~~~v~~l~~-~----~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   89 (461)
                      .+.|+.++. +    .|++ ++.++++++|.||++||++|+.+.|.|+++++++.+ +.|+.||+++++++|++|+|+++
T Consensus         3 ~g~vi~i~s~e~~~~~l~~-~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d~~~~l~~~~~I~~~   80 (113)
T d1ti3a_           3 EGQVIACHTVDTWKEHFEK-GKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAM   80 (113)
T ss_dssp             CCCEEEECSHHHHHHHHHH-HTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS-EEEEEEETTTCHHHHHHHHCSST
T ss_pred             CCcEEEEeCHHHHHHHHHH-HHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC-ceEEeeeeeccccccccCeeccc
Confidence            345666654 3    3444 456788999999999999999999999999999865 88999999999999999999999


Q ss_pred             cEEEEEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         90 PTVKIFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        90 P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      ||+++|++|+.+.++.| .+.++|.++|.++.
T Consensus        81 Pt~~~~k~G~~v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          81 PTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             TEEEEEETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             ceEEEEECCEEEEEEcC-CCHHHHHHHHHHHh
Confidence            99999999988888888 57899999999886

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=9.5e-20  Score=143.12  Aligned_cols=111  Identities=38%  Similarity=0.758  Sum_probs=99.0

Q ss_pred             CCCCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCccccc
Q psy17502        134 KGSSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYP  212 (461)
Q Consensus       134 ~~~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P  212 (461)
                      .++++.|+.|+.++|++++ ++++.++|.||++||++|+.+.+.|.++++.+++ .+.|+.|||+.+.+++.+|+|.++|
T Consensus         6 ~~~~s~v~~lt~~~f~~~i-~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P   84 (119)
T d2b5ea4           6 APEDSAVVKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFP   84 (119)
T ss_dssp             CCTTSSCEECCTTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCCCCccEEcCHHHHHHHH-hcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCC
Confidence            4556789999999999875 6788999999999999999999999999999864 6999999999999999999999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++++|++|..  .....|.|.++.++|++||.++.
T Consensus        85 ti~~f~~g~~--~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          85 SLKIFKNSDV--NNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             EEEEEETTCT--TCEEECCSCCSHHHHHHHHHHHT
T ss_pred             eEEEEECCEE--eeeEEecCCCCHHHHHHHHHHhh
Confidence            9999988743  24556899999999999999875

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=3.1e-20  Score=144.05  Aligned_cols=106  Identities=21%  Similarity=0.453  Sum_probs=92.8

Q ss_pred             CCCCceEcCc-cchhHHHh-cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccE
Q psy17502         14 SYSDVIKLTT-SNFDDKVI-KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPT   91 (461)
Q Consensus        14 ~~~~v~~l~~-~~f~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~   91 (461)
                      +.+.|.++.+ ++|+..+. .++++++|.|||+||++|+.+.|.|+++++++++.+.++.||++++++++++|+|+++||
T Consensus         3 ~~~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt   82 (111)
T d1xwaa_           3 AAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPT   82 (111)
T ss_dssp             CSCCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccE
Confidence            3556778854 77887443 356799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         92 VKIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        92 l~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      +++|++|+.+.++.|.. .+.|.+||+++
T Consensus        83 ~~~~~~G~~v~~~~G~~-~~~l~~~I~~~  110 (111)
T d1xwaa_          83 FVFLKNGVKVEEFAGAN-AKRLEDVIKAN  110 (111)
T ss_dssp             EEEEETTEEEEEEESCC-HHHHHHHHHHT
T ss_pred             EEEEECCEEEEEEeCCC-HHHHHHHHHhc
Confidence            99999998889999974 46788888764

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.82  E-value=6.6e-20  Score=141.58  Aligned_cols=106  Identities=21%  Similarity=0.460  Sum_probs=98.1

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ..|+++|+++|++.+.+++++++|.||++||++|+.+.+.|.+++..+.+.+.|+.+|++.+++++++|+|.++||+++|
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~   81 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLV   81 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEEEEE
Confidence            45899999999987778889999999999999999999999999999998999999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|    ....+|.|..+.+.|.+||.+++
T Consensus        82 ~~g----~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          82 KGE----QILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             ETT----EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ECC----EEEEEEeCCCCHHHHHHHHHHhc
Confidence            987    46678999999999999998764

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.81  E-value=2.1e-20  Score=142.89  Aligned_cols=97  Identities=23%  Similarity=0.502  Sum_probs=88.6

Q ss_pred             cCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502         21 LTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN  100 (461)
Q Consensus        21 l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~  100 (461)
                      -+.++|++ +++++++++|.||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|+|+++||+++|++|+.
T Consensus         6 ~s~~~f~~-~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~~   83 (103)
T d1syra_           6 TSQAEFDS-IISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSS   83 (103)
T ss_dssp             CSHHHHHH-HHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEE
T ss_pred             CCHHHHHH-HHhCCCcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeeccccCcceeeeeeeecceEEEEEECCEE
Confidence            36788888 888999999999999999999999999999999865 7899999999999999999999999999999988


Q ss_pred             CccccCCcchhHHHHHHHHH
Q psy17502        101 PTPYQGARTADAIIDVALEA  120 (461)
Q Consensus       101 ~~~y~g~~~~~~i~~~i~~~  120 (461)
                      ..++.|. +.+.|.+||.++
T Consensus        84 v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          84 VDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             EEEEESC-CHHHHHHHHHTT
T ss_pred             EEEEeCc-CHHHHHHHHHhh
Confidence            8999995 678899998764

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.7e-20  Score=140.90  Aligned_cols=101  Identities=15%  Similarity=0.326  Sum_probs=90.0

Q ss_pred             eEc-CccchhHHHh-cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEc
Q psy17502         19 IKL-TTSNFDDKVI-KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFS   96 (461)
Q Consensus        19 ~~l-~~~~f~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~   96 (461)
                      ..+ |+++|++.+. .++++++|.||++||++|+.+.|.|+++++++.+ +.|+.||++++++++++|+|+++||+++|+
T Consensus         4 ~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~~   82 (107)
T d1gh2a_           4 KPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVHQCQGTAATNNISATPTFQFFR   82 (107)
T ss_dssp             EEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred             EEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc-ccccccccccchhhhhhcCceeceEEEEEE
Confidence            344 6789998333 3467999999999999999999999999999875 899999999999999999999999999999


Q ss_pred             CCCCCccccCCcchhHHHHHHHHHH
Q psy17502         97 DKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        97 ~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +|+.+.++.|. +.+.|.+++.+++
T Consensus        83 ~G~~v~~~~G~-~~~~l~~~i~k~l  106 (107)
T d1gh2a_          83 NKVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             TTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCC-CHHHHHHHHHHhh
Confidence            99999999995 8899999998875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.1e-20  Score=140.79  Aligned_cols=100  Identities=22%  Similarity=0.477  Sum_probs=87.5

Q ss_pred             ceEc-CccchhHHHhc--CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         18 VIKL-TTSNFDDKVIK--SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        18 v~~l-~~~~f~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      |.++ +.++|++ +++  ++++++|.|||+||++|+.+.|.+.++++.+.+ +.|++||++++++++++|+|+++||+++
T Consensus         2 v~~i~s~~~f~~-~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~vd~d~~~~~~~~~~V~~~Pt~~~   79 (105)
T d2ifqa1           2 VKQIESKTAFQE-ALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKCMPTFQF   79 (105)
T ss_dssp             CEEECSHHHHHH-HHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred             eEEcCCHHHHHH-HHHhCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc-ceeeecccccCHhHHHHcCceEEEEEEE
Confidence            3455 4567887 654  357999999999999999999999999998865 6799999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      |++|+.+.++.|. +.+.|.+++.+.
T Consensus        80 ~~~G~~v~~~~G~-~~~~l~~~i~~~  104 (105)
T d2ifqa1          80 FKKGQKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             EETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred             EECCEEEEEEeCC-CHHHHHHHHHhh
Confidence            9999999999996 678899988764

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2e-19  Score=138.82  Aligned_cols=106  Identities=28%  Similarity=0.571  Sum_probs=98.2

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ..|++||+++|++.+.+++++++|.||++||++|+.+.+.+.++|..+.+.+.++.+|++.++.++.+|+|.++||+++|
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~   81 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEEEE
Confidence            45889999999987778889999999999999999999999999999989999999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|    ....+|.|.++.+.|.+||.+++
T Consensus        82 ~~G----~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          82 KNG----EVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             ETT----EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ECC----EEEEEEeCCCCHHHHHHHHHHhc
Confidence            988    46778999999999999998764

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.79  E-value=2.8e-19  Score=137.00  Aligned_cols=103  Identities=29%  Similarity=0.569  Sum_probs=96.1

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      |.++|+++|++.+.+++++++|.||++||++|+.+.+.+.++++.+.+.+.++.+|++.+++++++|+|.++||+++|++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~   80 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKN   80 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEEEc
Confidence            46899999999888888999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      |    ....++.|..+.+.|.+||.++
T Consensus        81 G----~~v~~~~G~~~~~~l~~~i~~~  103 (104)
T d1fb6a_          81 G----ERKESIIGAVPKSTLTDSIEKY  103 (104)
T ss_dssp             T----EEEEEEEECCCHHHHHHHHHHH
T ss_pred             C----eEEEEEeCCCCHHHHHHHHHHh
Confidence            7    4677899999999999999875

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.79  E-value=4.6e-19  Score=136.50  Aligned_cols=104  Identities=29%  Similarity=0.522  Sum_probs=96.4

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      +..+|+++|++.+.+++++++|.||++||++|+.+.+.+.+++..+.+.+.|+.+|++.+++++++|+|.++||+++|++
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~   82 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKG   82 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESS
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEEEC
Confidence            45789999999888888999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      |    ....++.|..+.+.|.+||.+++
T Consensus        83 G----~~v~~~~G~~~~~~l~~~i~~~L  106 (107)
T d1dbya_          83 G----KKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             S----SEEEEEESCCCHHHHHHHHHHHC
T ss_pred             C----eEEEEEeCCCCHHHHHHHHHHhh
Confidence            7    46778899999999999998764

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.79  E-value=2.3e-19  Score=138.32  Aligned_cols=101  Identities=21%  Similarity=0.274  Sum_probs=87.8

Q ss_pred             EcCccchhHHHhcCCC-eEEEEEECCCCHhHHhhHHHHHHHHHH----cCCceEEEEEecCCchhhHhhcCCCCccEEEE
Q psy17502         20 KLTTSNFDDKVIKSDE-VWIVEYYAPWCGHCQSFKDEYMKLATA----LKGVVKVGAVNADEEKSLSSSHGVTGFPTVKI   94 (461)
Q Consensus        20 ~l~~~~f~~~~~~~~~-~~lv~f~~~~c~~C~~~~~~~~~~a~~----~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~   94 (461)
                      +|+++.++. +.+.++ .+++.||++||++|+++.|.+.++|.+    ..++|.+..+|++++++++++|+|.++||+++
T Consensus         1 ~l~~~~~e~-~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i   79 (107)
T d1a8la2           1 NLMDETKQA-IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVI   79 (107)
T ss_dssp             CCCHHHHHH-HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEE
T ss_pred             CCCHHHHHH-HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEE
Confidence            467777777 555444 556679999999999999999999865    33469999999999999999999999999999


Q ss_pred             EcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         95 FSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        95 ~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +++|+...++.|..+.+.+.++|.+.+
T Consensus        80 ~~~G~~~~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          80 QVNGEDRVEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EeCCeEEEEEECCCCHHHHHHHHHHhh
Confidence            999988899999999999999999865

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=2.6e-20  Score=146.88  Aligned_cols=103  Identities=22%  Similarity=0.299  Sum_probs=88.4

Q ss_pred             CCCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-------ceEEEEEecCCchhhHhhcC--
Q psy17502         15 YSDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-------VVKVGAVNADEEKSLSSSHG--   85 (461)
Q Consensus        15 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-------~v~~~~vd~~~~~~l~~~~~--   85 (461)
                      .+.+++||++||++ ++++++++||+||+|||.+|.  .|+|.++|+.+.+       +|.++.+||++++++|++++  
T Consensus         3 ~~~~v~L~~~nFd~-~i~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~   79 (122)
T d1g7ea_           3 TKGALPLDTVTFYK-VIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD   79 (122)
T ss_dssp             CSSSCSCSHHHHHH-HGGGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCS
T ss_pred             CCceEECCHHhHHH-HHhhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccc
Confidence            35689999999999 889999999999999998886  4889899888854       35566678888999999875  


Q ss_pred             CCCccEEEEEcCCCC--CccccCCcchhHHHHHHHHH
Q psy17502         86 VTGFPTVKIFSDKRN--PTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        86 i~~~P~l~~~~~g~~--~~~y~g~~~~~~i~~~i~~~  120 (461)
                      |++||||++|++|+.  +..|+|.++.++|.+||+++
T Consensus        80 I~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          80 KESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             SSSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             ccCCCeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence            789999999998753  46799999999999999876

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.78  E-value=5.7e-19  Score=135.48  Aligned_cols=102  Identities=25%  Similarity=0.526  Sum_probs=93.9

Q ss_pred             eeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcC
Q psy17502        140 VVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSP  219 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~  219 (461)
                      ++.+|+++|++.+ +++++++|.||++||++|+.+.+.+.+++..+.+.+.|+.+|++.++.++++|+|.++||+++|++
T Consensus         2 ~i~lt~~~f~~~i-~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~   80 (105)
T d1nw2a_           2 TMTLTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKG   80 (105)
T ss_dssp             CEEECTTTHHHHT-TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred             EEEECHHHHHHHH-hCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEEEC
Confidence            5689999999865 778999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        220 GSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       220 ~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      |    ....++.|..+.+.|.++|.+.
T Consensus        81 G----~~~~~~~G~~~~~~l~~~i~~~  103 (105)
T d1nw2a_          81 G----EPVKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             T----EEEEEEESCCCHHHHHHHTTTT
T ss_pred             C----EEEEEEECCCCHHHHHHHHHHH
Confidence            8    4667889999999999998654

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=4.6e-19  Score=138.11  Aligned_cols=104  Identities=14%  Similarity=0.196  Sum_probs=82.1

Q ss_pred             CceEcCccchhHHHhcC--CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         17 DVIKLTTSNFDDKVIKS--DEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~--~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ....++..++++ +++.  +.++++.|+++||++|+.+.|.|.++++++.+ ++.++.||++.+++++++|||+++||++
T Consensus        12 g~~~v~~~~ld~-~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~   90 (119)
T d2es7a1          12 GWQPVEASTVDD-WIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATL   90 (119)
T ss_dssp             TCEECCCC---------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEE
T ss_pred             CCceecccCHHH-HHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEE
Confidence            567889999998 5544  45889999999999999999999999999987 6999999999999999999999999999


Q ss_pred             EEcCCCCCccccCCcchhHHHHHHHHHH
Q psy17502         94 IFSDKRNPTPYQGARTADAIIDVALEAI  121 (461)
Q Consensus        94 ~~~~g~~~~~y~g~~~~~~i~~~i~~~~  121 (461)
                      +|++|+...++.|.++.+++.++++..+
T Consensus        91 ~~~~G~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          91 VFTDGKLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             EESCC----CEESCCCHHHHHHHHHHHH
T ss_pred             EEEcCeEEEEeeCCCCHHHHHHHHHHHh
Confidence            9999999999999999999999998765

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.76  E-value=5.1e-19  Score=130.07  Aligned_cols=83  Identities=25%  Similarity=0.413  Sum_probs=77.1

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHH
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAI  113 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i  113 (461)
                      +++.+++|||+||++|+.+.|.|+++++.+.+.+.+..+|+++++++|++|+|+++||++++++|    ++.|.++.+++
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g----~~~G~~~~~~l   77 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDV----EFIGAPTKEAL   77 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEE----ECCSSSSSHHH
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCc----EEECCCCHHHH
Confidence            57889999999999999999999999999988899999999999999999999999999988776    46799999999


Q ss_pred             HHHHHHH
Q psy17502        114 IDVALEA  120 (461)
Q Consensus       114 ~~~i~~~  120 (461)
                      .+++.++
T Consensus        78 ~~~i~~~   84 (85)
T d1fo5a_          78 VEAIKKR   84 (85)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9999875

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-18  Score=136.04  Aligned_cols=108  Identities=44%  Similarity=0.886  Sum_probs=96.1

Q ss_pred             CCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcccHhhhhhcCcccccE
Q psy17502        137 SKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       137 ~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~~~l~~~~~i~~~P~  213 (461)
                      ...|+.++.++|++.+ ++++.++|.||++||++|+.+.+.|.++++.+.+   .+.++.+|++.+..++.+|+|.++||
T Consensus         6 ~~~V~~l~~~~f~~~l-~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   84 (120)
T d1meka_           6 EDHVLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPT   84 (120)
T ss_dssp             ETTEEECCTTTHHHHH-HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSE
T ss_pred             CCCeEEcCHHHHHHHH-hcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCe
Confidence            3568899999999865 6678999999999999999999999999998863   59999999999999999999999999


Q ss_pred             EEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +++|++|..  .....|.|.++.++|.+||.+++
T Consensus        85 ~~~~~~G~~--~~~~~~~g~~~~~~l~~fi~~~~  116 (120)
T d1meka_          85 IKFFRNGDT--ASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             EEEEESSCS--SSCEECCCCSSHHHHHHHHHTTS
T ss_pred             EEEEECCeE--eeeEEecCCCCHHHHHHHHHHhh
Confidence            999998742  24567899999999999999886

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.9e-18  Score=136.60  Aligned_cols=103  Identities=15%  Similarity=0.213  Sum_probs=85.1

Q ss_pred             CccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC
Q psy17502         22 TTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN  100 (461)
Q Consensus        22 ~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~  100 (461)
                      +..+|++.+.. ++++++|.|||+||++|+++.|.++++++++++.+.|+.||++++++++++|+|+++||+++|++|+.
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g~~   88 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKH   88 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEEEeCCcE
Confidence            34578884443 45699999999999999999999999999999999999999999999999999999999999998865


Q ss_pred             Cccc---------cCC-cchhHHHHHHHHHHhhh
Q psy17502        101 PTPY---------QGA-RTADAIIDVALEAIRQK  124 (461)
Q Consensus       101 ~~~y---------~g~-~~~~~i~~~i~~~~~~~  124 (461)
                      +..-         .|. .+.+++++.+.......
T Consensus        89 i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~~~  122 (137)
T d1qgva_          89 IMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA  122 (137)
T ss_dssp             EEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCcceeeeehhhhHHHHHHHHHHHHHH
Confidence            5322         222 46677888877665443

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.74  E-value=1.7e-17  Score=132.70  Aligned_cols=125  Identities=18%  Similarity=0.285  Sum_probs=103.3

Q ss_pred             CCCCcceeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCC
Q psy17502        251 VPPPEIKQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIG  330 (461)
Q Consensus       251 ~~~p~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~  330 (461)
                      ...|++.+++..+....+..+.+++++++ .     ...+.+.++..++++|++|++++ .|+++|...+...++.||+.
T Consensus         3 ~~lPLv~e~~~~n~~~~~~~~~pl~~lf~-~-----~~~~~~~~~~~~~~vA~~~~~ki-~Fv~vd~~~~~~~l~~~gl~   75 (133)
T d2djka1           3 LGSPLIGEIGPETYSDYMSAGIPLAYIFA-E-----TAEERKELSDKLKPIAEAQRGVI-NFGTIDAKAFGAHAGNLNLK   75 (133)
T ss_dssp             CSCCCSEECCHHHHHHHHHTTSCEEEEEC-S-----CSSSHHHHHHHHHHHHHSSTTTS-EEEEECTTTTGGGTTTTTCC
T ss_pred             CCCCceeccChhhHHHHhcCCCCEEEEEe-C-----CchHHHHHHHHHHHHHHHhcCce-EEEEEeHHHhHHHHHHhcCC
Confidence            35899999998777777767777666543 2     23467889999999999999996 78888877788899999999


Q ss_pred             CCCCccEEEEccCc-cccccC-CCCCCHHHHHHHHHHHhcCCCCCCCcCCCCCCC
Q psy17502        331 GFGYPAMAVLNAKK-MKYSLL-KGPFSYDGINEFLRDLSYGRGHTAPVKGAALPQ  383 (461)
Q Consensus       331 ~~~~P~l~i~~~~~-~k~~~~-~~~~~~~~i~~Fi~~~~~Gkl~~~~~ks~~iP~  383 (461)
                      ..++|+++|++..+ .+|.+. .++++.++|.+||+++++||+ +|++||||+|+
T Consensus        76 ~~~~P~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl-~p~~kSe~iPe  129 (133)
T d2djka1          76 TDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI-EPSIKSEPIPE  129 (133)
T ss_dssp             SSSSSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCC-CCSSCCCCCCT
T ss_pred             cccCCcEEEEEcCCCceecCCccccCCHHHHHHHHHHHHcCCC-CcccccCCCCC
Confidence            88999999998776 455544 458999999999999999999 59999999993

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=3e-19  Score=141.55  Aligned_cols=106  Identities=12%  Similarity=0.171  Sum_probs=96.1

Q ss_pred             CceEcCccchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         17 DVIKLTTSNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ....++..+|++ ++.+.  ++++|.|+|+||++|+.+.|.|.++++++.++ +.+++||++.+++++++|+|.++||++
T Consensus        18 g~~~~~~~~~d~-~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~   96 (132)
T d2hfda1          18 GWTPVSESRLDD-WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATL   96 (132)
T ss_dssp             TCEEECHHHHHH-HHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEE
T ss_pred             CCcccccccHHH-HHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEE
Confidence            466789999998 54433  57888999999999999999999999999885 789999999999999999999999999


Q ss_pred             EEcCCCCCccccCCcchhHHHHHHHHHHhh
Q psy17502         94 IFSDKRNPTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        94 ~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      +|++|+.+.++.|.++.+++.+++...+.+
T Consensus        97 ~~~~G~~v~~~~G~~~~~~l~~~i~~ll~~  126 (132)
T d2hfda1          97 VFTGGNYRGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_dssp             EEETTEEEEEECCCSCHHHHHHHHHHHHSC
T ss_pred             EEEcCcEeeeecCCCCHHHHHHHHHHHhCc
Confidence            999999999999999999999999988743

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.73  E-value=6.6e-18  Score=133.45  Aligned_cols=104  Identities=20%  Similarity=0.316  Sum_probs=88.8

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhh------hhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCccc
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHC------KNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRG  210 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c------~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~  210 (461)
                      +.|+.||.++|++.+ ++++.++|.||+|||++|      ..+.+.+..+|+.+.+ .+.|+.|||+.++++|++++|.+
T Consensus        11 ~~V~~L~~~nf~~~l-~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~~   89 (124)
T d1a8ya1          11 DRVINVNAKNYKNVF-KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTE   89 (124)
T ss_dssp             CCCEECCTTTHHHHH-HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCCS
T ss_pred             CccEECCHHHHHHHH-HhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhcccccc
Confidence            458899999999886 556789999999999974      3445566666776654 59999999999999999999999


Q ss_pred             ccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        211 YPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       211 ~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +|||++|++|     ....|.|.++.+.|++||.+..
T Consensus        90 yPTi~~f~~g-----~~~~y~G~r~~~~l~~fi~~~l  121 (124)
T d1a8ya1          90 EDSIYVFKED-----EVIEYDGEFSADTLVEFLLDVL  121 (124)
T ss_dssp             TTCEEEEESS-----SEEECCSCCSHHHHHHHHHHHH
T ss_pred             CCcEEEeccC-----ccEEeeCCCCHHHHHHHHHHhc
Confidence            9999999987     5678999999999999998865

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=6.9e-18  Score=136.54  Aligned_cols=108  Identities=28%  Similarity=0.603  Sum_probs=93.5

Q ss_pred             CCCceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---ceEEEEEeCcccHhhhhhcCccccc
Q psy17502        136 SSKAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG---KVKLGAVDATVHQRIAGEFNIRGYP  212 (461)
Q Consensus       136 ~~~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~---~i~f~~v~~~~~~~l~~~~~i~~~P  212 (461)
                      ..+.|..|+..+|++.+.+.+++++|.||++||++|+.+.+.|.++|+.+++   .+.++.+|+  +..+|++|+|.++|
T Consensus        10 ~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~--~~~~~~~~~v~~~P   87 (140)
T d2b5ea1          10 QDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDH--TENDVRGVVIEGYP   87 (140)
T ss_dssp             CSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG--GGCCCSSCCCSSSS
T ss_pred             CCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeec--cchhccccccccCC
Confidence            4567999999999999877788999999999999999999999999998863   477777775  45689999999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++++|++|..  .....|.|.++.++|.+||.++.
T Consensus        88 tl~~f~~g~~--~~~~~y~G~~t~~~l~~fi~~~~  120 (140)
T d2b5ea1          88 TIVLYPGGKK--SESVVYQGSRSLDSLFDFIKENG  120 (140)
T ss_dssp             EEEEECCTTS--CCCCBCCSCCCHHHHHHHHHHHC
T ss_pred             eEEEEECCEE--cceeEeCCCCCHHHHHHHHHHcC
Confidence            9999998743  24567999999999999999875

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.73  E-value=4.1e-18  Score=132.75  Aligned_cols=102  Identities=15%  Similarity=0.158  Sum_probs=89.4

Q ss_pred             CCceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc----hhhHhhcCCCCccE
Q psy17502         16 SDVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE----KSLSSSHGVTGFPT   91 (461)
Q Consensus        16 ~~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~P~   91 (461)
                      .++..+|.+.+.+ .+.++++++|+||+|||++|+++.|.|.+++.+++.++.++.++...+    ++++++|+|.++||
T Consensus         9 ~~~~~~t~~~~~~-~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1           9 KDLEVTTVVRAQE-ALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             TTSEECCHHHHHH-HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCE
T ss_pred             eeeeeCCHHHHHH-HHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccE
Confidence            4577788888888 788999999999999999999999999999999988777766654433    46899999999999


Q ss_pred             EEEEcCCCCCccccCCcchhHHHHHHH
Q psy17502         92 VKIFSDKRNPTPYQGARTADAIIDVAL  118 (461)
Q Consensus        92 l~~~~~g~~~~~y~g~~~~~~i~~~i~  118 (461)
                      +++|++|+...++.|..+.++|.+|+.
T Consensus        88 li~~~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          88 FVHITDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEEEECCEEEEEEcCCCCHHHHHHHHc
Confidence            999999988899999999999999973

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.72  E-value=5.6e-18  Score=132.54  Aligned_cols=108  Identities=27%  Similarity=0.577  Sum_probs=88.4

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc--eEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGK--VKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~--i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      .+|..|+.++|++.+.+++++++|.||++||++|+.+.|.|+++|+.+...  ..+..+++......+.+++|.++||++
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~   81 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIK   81 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEE
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEE
Confidence            368999999999988788899999999999999999999999999998642  112233333444556789999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +|++|.+  .....|.|.++.++|.+||.++.
T Consensus        82 ~f~~g~~--~~~~~~~g~~~~~~l~~fi~~~~  111 (116)
T d2djja1          82 LYPAGAK--GQPVTYSGSRTVEDLIKFIAENG  111 (116)
T ss_dssp             EECSSCT--TSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             EEECCcc--CceEEecCCCCHHHHHHHHHHcc
Confidence            9988743  34567999999999999999875

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=3.8e-18  Score=124.98  Aligned_cols=81  Identities=12%  Similarity=0.249  Sum_probs=73.7

Q ss_pred             EEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHH
Q psy17502         37 WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDV  116 (461)
Q Consensus        37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~  116 (461)
                      .++.||+|||++|+++.|.|+++++++++++.++.+|++++++++++|||+++||++++..    .+|.|..+.+.+.++
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~----~~~~G~~~~~~l~~~   79 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAINGV----VRFVGAPSREELFEA   79 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEETTT----EEEECSSCCHHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEECCc----EEEEcCCCHHHHHHH
Confidence            4667999999999999999999999999899999999999999999999999999877433    368999999999999


Q ss_pred             HHHHH
Q psy17502        117 ALEAI  121 (461)
Q Consensus       117 i~~~~  121 (461)
                      |.+.+
T Consensus        80 i~~~l   84 (85)
T d1nhoa_          80 INDEM   84 (85)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98864

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.71  E-value=2.7e-17  Score=127.17  Aligned_cols=104  Identities=22%  Similarity=0.469  Sum_probs=91.8

Q ss_pred             ceeEc-Chhhhhhhhh---cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        139 AVVEL-TDSNFEKLVY---NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       139 ~v~~l-~~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      .|+.+ +.++|++.+.   +++++++|.||++||++|+.+.|.|+++++.+.+++.|+.+|++.+++++++|+|.++||+
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~   82 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF   82 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCCEE
Confidence            46777 6777877663   3578999999999999999999999999999988899999999999999999999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|++|    ....++.| .+.++|.+||.++.
T Consensus        83 ~~~~~G----~~v~~~~G-~~~~~l~~~i~k~~  110 (112)
T d1ep7a_          83 HVYKDG----VKADDLVG-ASQDKLKALVAKHA  110 (112)
T ss_dssp             EEEETT----EEEEEEES-CCHHHHHHHHHHHH
T ss_pred             EEEECC----EEEEEEeC-cCHHHHHHHHHHHh
Confidence            999988    45667788 48999999998875

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=5.3e-17  Score=127.60  Aligned_cols=105  Identities=13%  Similarity=0.175  Sum_probs=89.2

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc---CceEEEEEeCcc-----cHhhhhhcCc--
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELE---GKVKLGAVDATV-----HQRIAGEFNI--  208 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~---~~i~f~~v~~~~-----~~~l~~~~~i--  208 (461)
                      .+++|++.+|++.+ .+++.++|.||++||++|+  .|.|.++|+.+.   ..+.++.|||+.     +++++.+|+|  
T Consensus         3 g~v~L~~~nFd~~v-~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           3 GCVDLDELSFEKTV-ERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TCEECCTTTHHHHH-TTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             ceEEcChHhHHHHH-hcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            47899999999986 6678999999999999999  499999998774   579999999853     6889999988  


Q ss_pred             ccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       209 ~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      .++||+++|+++.... ....|.|+++.++|.+||.++.
T Consensus        80 ~~~PTi~~f~~g~~~~-~~~~~~g~rt~~~l~~fv~~~~  117 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEY-VQLPSHVDVTLDNLKAFVSANT  117 (122)
T ss_dssp             TSCCEEEEESSSSSSE-EECCTTSCCCHHHHHHHHHHHS
T ss_pred             CCCCcEEEEeCCcccc-cccccCCCCCHHHHHHHHHHhc
Confidence            5799999999874311 3456889999999999999986

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=5e-16  Score=119.89  Aligned_cols=104  Identities=24%  Similarity=0.516  Sum_probs=90.0

Q ss_pred             CceeEc-Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEE
Q psy17502        138 KAVVEL-TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       138 ~~v~~l-~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~  215 (461)
                      ..+..+ +.++|+..+.+ ++++++|.||++||++|+.+.|.|.+++..+.+.+.++.++++.+++++++|+|.++||++
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~~   84 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFV   84 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccEEE
Confidence            446666 55778776643 5689999999999999999999999999999989999999999999999999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|++|    ....++.|. +.++|.+||+++
T Consensus        85 ~~~~G----~~v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          85 FLKNG----VKVEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             EEETT----EEEEEEESC-CHHHHHHHHHHT
T ss_pred             EEECC----EEEEEEeCC-CHHHHHHHHHhc
Confidence            99988    456778886 567899999875

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=6.7e-16  Score=119.60  Aligned_cols=104  Identities=22%  Similarity=0.456  Sum_probs=89.1

Q ss_pred             CceeEc-Chhhhhhhhh---cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccE
Q psy17502        138 KAVVEL-TDSNFEKLVY---NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       138 ~~v~~l-~~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~  213 (461)
                      ..++.+ +.++|++.+.   +++++++|.||++||++|+.+.|.|.++++.+. .+.|+.+|++.+++++++|+|+++||
T Consensus         6 ~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-~~~~~~vd~~~~~~l~~~~~V~~~Pt   84 (114)
T d1xfla_           6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAMPT   84 (114)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             CcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhccccc-ccceeEEEeeeceeeccccceeeeEE
Confidence            446665 7777776553   467899999999999999999999999999885 58999999999999999999999999


Q ss_pred             EEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      +++|++|    ....++.|. +.++|.+||.+++
T Consensus        85 ~~~~~~G----~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          85 FMFLKEG----KILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             EEEEETT----EEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEEECC----EEEEEEeCc-CHHHHHHHHHHhh
Confidence            9999988    456677785 7899999998874

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.64  E-value=8.3e-16  Score=118.46  Aligned_cols=103  Identities=27%  Similarity=0.475  Sum_probs=89.8

Q ss_pred             CceeEcChhhhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc-cHhhhhhcCcccccEEE
Q psy17502        138 KAVVELTDSNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV-HQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~-~~~l~~~~~i~~~P~i~  215 (461)
                      ..+.+++.++|.+.+..+ +++++|.||++||++|+.+.|.|.++++.+. .+.|+.+|++. +++++++|+|.++||++
T Consensus         6 g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-~v~~~~vd~~~~~~~l~~~~~V~~~Pt~~   84 (112)
T d1f9ma_           6 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFK   84 (112)
T ss_dssp             TSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSSSSEEE
T ss_pred             eeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccc-cceeecccccccchhhHhheeeccCCEEE
Confidence            458899999999987554 5799999999999999999999999999986 57899999975 78999999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|++|    ....++.|. +.+.+.++|.++
T Consensus        85 ~~k~G----~~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          85 ILKEN----SVVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             EEETT----EEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEECC----EEEEEEeCC-CHHHHHHHHHHc
Confidence            99987    466778886 678999999764

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.4e-16  Score=122.65  Aligned_cols=98  Identities=10%  Similarity=0.140  Sum_probs=79.0

Q ss_pred             ceEcCccchhHHHhc--CCCeEEEEEECC-------CCHhHHhhHHHHHHHHHHcCCceEEEEEecC-------CchhhH
Q psy17502         18 VIKLTTSNFDDKVIK--SDEVWIVEYYAP-------WCGHCQSFKDEYMKLATALKGVVKVGAVNAD-------EEKSLS   81 (461)
Q Consensus        18 v~~l~~~~f~~~~~~--~~~~~lv~f~~~-------~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-------~~~~l~   81 (461)
                      |...+.++|.+ ++.  ++++++|+|||+       ||++|+++.|.+.++++.+++++.|+.||++       .+..++
T Consensus         4 i~v~~~~e~~~-~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~   82 (119)
T d1woua_           4 VSVSGFEEFHR-AVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR   82 (119)
T ss_dssp             EEEESHHHHHH-HHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred             EEeCCHHHHHH-HHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHH
Confidence            55667888888 554  446999999995       9999999999999999999888999999985       455699


Q ss_pred             hhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHH
Q psy17502         82 SSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        82 ~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i  117 (461)
                      ++|+|+++||+++|++|+.+..+.+ .+.+.+..++
T Consensus        83 ~~~~V~~iPT~i~~~~g~~l~~~~~-~~~~ll~~~~  117 (119)
T d1woua_          83 KNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLF  117 (119)
T ss_dssp             HHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHH
T ss_pred             HhCCeEEEEEEEEEECCeEEeeeec-CCHHHHHHHh
Confidence            9999999999999998877766554 3344444443

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.7e-16  Score=117.20  Aligned_cols=102  Identities=21%  Similarity=0.359  Sum_probs=88.7

Q ss_pred             eeEc-Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        140 VVEL-TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       140 v~~l-~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      |..+ +.++|++.+.+ ++++++|.||++||++|+.+.|.|.++|+.+. .+.|+.+|++.+++++++|+|.++||+++|
T Consensus         3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~-~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~   81 (107)
T d1gh2a_           3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccc-cccccccccccchhhhhhcCceeceEEEEE
Confidence            4455 67888887653 36789999999999999999999999999986 589999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|    ....++.| .+.+.|.++|.+++
T Consensus        82 ~~G----~~v~~~~G-~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          82 RNK----VRIDQYQG-ADAVGLEEKIKQHL  106 (107)
T ss_dssp             ETT----EEEEEEES-SCHHHHHHHHHHHH
T ss_pred             ECC----EEEEEEeC-CCHHHHHHHHHHhh
Confidence            988    46677888 48999999998764

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.64  E-value=5.9e-16  Score=117.75  Aligned_cols=97  Identities=24%  Similarity=0.548  Sum_probs=85.9

Q ss_pred             cChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCC
Q psy17502        143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSR  222 (461)
Q Consensus       143 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~  222 (461)
                      .+.++|++.+ +++++++|.||++||++|+.+.+.+.++++.+. ...|+.+|++.+++++++|+|.++||+++|++|  
T Consensus         6 ~s~~~f~~~i-~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~-~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G--   81 (103)
T d1syra_           6 TSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNG--   81 (103)
T ss_dssp             CSHHHHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETT--
T ss_pred             CCHHHHHHHH-hCCCcEEEEEeCCcccCcccccccchhhhhccc-ceEEEeeccccCcceeeeeeeecceEEEEEECC--
Confidence            3677888865 667899999999999999999999999999985 578999999999999999999999999999988  


Q ss_pred             CCcCcccccCCCCHHHHHHHHHhh
Q psy17502        223 SASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       223 ~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                        ....++.|. +.+.|.+||.++
T Consensus        82 --~~v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          82 --SSVDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             --EEEEEEESC-CHHHHHHHHHTT
T ss_pred             --EEEEEEeCc-CHHHHHHHHHhh
Confidence              456778884 789999999875

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.63  E-value=9e-16  Score=118.75  Aligned_cols=103  Identities=23%  Similarity=0.432  Sum_probs=86.2

Q ss_pred             ceeEc-Chhhhhhhh---hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        139 AVVEL-TDSNFEKLV---YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       139 ~v~~l-~~~~~~~~~---~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      .++.+ +.+++++.+   ..++++++|.||++||++|+.+.|.|.++++.+. .+.|+.+|++.+++++++|+|.++||+
T Consensus         5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~I~~~Pt~   83 (113)
T d1ti3a_           5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMPTF   83 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSSTTEE
T ss_pred             cEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCC-CceEEeeeeeccccccccCeecccceE
Confidence            45555 445554433   3567899999999999999999999999999885 589999999999999999999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|++|    ....++.| .+.++|.+||.++.
T Consensus        84 ~~~k~G----~~v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          84 IFLKDG----KLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEETT----EEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             EEEECC----EEEEEEcC-CCHHHHHHHHHHHh
Confidence            999988    45566777 57789999998875

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=2.1e-16  Score=124.13  Aligned_cols=105  Identities=17%  Similarity=0.325  Sum_probs=86.8

Q ss_pred             CceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--c-----eEEEEEeCcccHhhhhhcC--c
Q psy17502        138 KAVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--K-----VKLGAVDATVHQRIAGEFN--I  208 (461)
Q Consensus       138 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--~-----i~f~~v~~~~~~~l~~~~~--i  208 (461)
                      ..++.|++++|++++ ..++.++|.||++||.+|.  .+.|.++|..+.+  .     +.++.+||+.++++|.+++  |
T Consensus         4 ~~~v~L~~~nFd~~i-~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I   80 (122)
T d1g7ea_           4 KGALPLDTVTFYKVI-PKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDK   80 (122)
T ss_dssp             SSSCSCSHHHHHHHG-GGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSS
T ss_pred             CceEECCHHhHHHHH-hhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccc
Confidence            458899999999876 6688999999999998775  4889999988863  2     4455567888999998864  7


Q ss_pred             ccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        209 RGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       209 ~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      .++|||++|++|..  .....|+|.++.++|++||+++.
T Consensus        81 ~~yPTi~~f~~G~~--~~~~~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          81 ESYPVFYLFRDGDF--ENPVPYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             SSCEEEEEEESSCC--CCCEEEESCCCHHHHHHHHHTTS
T ss_pred             cCCCeEEEEecCcc--cCceecCCCCCHHHHHHHHHhcc
Confidence            79999999998843  34678999999999999998864

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.62  E-value=7.4e-16  Score=115.08  Aligned_cols=81  Identities=19%  Similarity=0.249  Sum_probs=70.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhH
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADA  112 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~  112 (461)
                      .+...++.|+++||++|+.+.|.|++++... .++.+..||++++++++++|+|+++||+++  +|+.  .|.|.++.++
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~-~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~--~~~G~~~~~~   88 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQALNLMAVLN-PRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKE--FGQGRMTLTE   88 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-TTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEE--EEESCCCHHH
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHhC-CceEEEEEecccchHHHhhcccccccEEEE--CCEE--EEecCCCHHH
Confidence            3557888899999999999999999999875 459999999999999999999999999865  6543  4789999999


Q ss_pred             HHHHHH
Q psy17502        113 IIDVAL  118 (461)
Q Consensus       113 i~~~i~  118 (461)
                      |+++|.
T Consensus        89 l~~~le   94 (96)
T d1hyua4          89 IVAKVD   94 (96)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            998773

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.7e-15  Score=115.59  Aligned_cols=99  Identities=24%  Similarity=0.545  Sum_probs=85.4

Q ss_pred             eEc-ChhhhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        141 VEL-TDSNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       141 ~~l-~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      ..+ +.++|++.+..+ +++++|.||++||++|+.+.|.+.++++.+. .+.|+.+|++.+++++++|+|.++||+++|+
T Consensus         3 ~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~-~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~   81 (105)
T d2ifqa1           3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDVASECEVKCMPTFQFFK   81 (105)
T ss_dssp             EEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             EEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccc-cceeeecccccCHhHHHHcCceEEEEEEEEE
Confidence            345 567788876543 5789999999999999999999999999885 5679999999999999999999999999999


Q ss_pred             CCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        219 PGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      +|    ....++.|. +.+.|.+||.+
T Consensus        82 ~G----~~v~~~~G~-~~~~l~~~i~~  103 (105)
T d2ifqa1          82 KG----QKVGEFSGA-NKEKLEATINE  103 (105)
T ss_dssp             TT----EEEEEEESC-CHHHHHHHHHH
T ss_pred             CC----EEEEEEeCC-CHHHHHHHHHh
Confidence            88    467778885 78899999875

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.61  E-value=2.1e-15  Score=116.27  Aligned_cols=101  Identities=26%  Similarity=0.392  Sum_probs=86.5

Q ss_pred             CceeEc-ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEE
Q psy17502        138 KAVVEL-TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       138 ~~v~~l-~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~  216 (461)
                      +.++.+ +.++|.+.+ +++.+++|.||++||++|+.+.|.|.+++..+ +.+.|+.+|++.+++++++|+|.++||+++
T Consensus         8 p~vi~i~s~~~~~~~~-~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~   85 (113)
T d1r26a_           8 PSVVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDADNNSEIVSKCRVLQLPTFII   85 (113)
T ss_dssp             SCCEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CceEEeCCHHHHHHHH-cCCCeEEEEEECCCCccchhhceecccccccc-ccccccccccccchhhHHHccccCCCEEEE
Confidence            346666 677888765 77889999999999999999999999999998 479999999999999999999999999999


Q ss_pred             EcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        217 FSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       217 ~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      |++|    ....++.|. +.+.+.++|.+
T Consensus        86 ~~~G----~~v~~~~G~-~~~~l~~~l~~  109 (113)
T d1r26a_          86 ARSG----KMLGHVIGA-NPGMLRQKLRD  109 (113)
T ss_dssp             EETT----EEEEEEESS-CHHHHHHHHHH
T ss_pred             EECC----EEEEEEeCC-CHHHHHHHHHH
Confidence            9988    456677884 56777777654

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.60  E-value=2.9e-15  Score=114.90  Aligned_cols=100  Identities=23%  Similarity=0.301  Sum_probs=82.7

Q ss_pred             cChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHh----cCceEEEEEeCcccHhhhhhcCcccccEEEEEc
Q psy17502        143 LTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASEL----EGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFS  218 (461)
Q Consensus       143 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~----~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~  218 (461)
                      |+++..+.+...++++.++.|+++||++|+.+.|.+.++|...    .+.+.+..+|++++++++++|+|.++||+++++
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~   81 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQV   81 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEE
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEe
Confidence            4556665543234445566799999999999999999998643    356999999999999999999999999999999


Q ss_pred             CCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        219 PGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       219 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      +|    ....++.|..+.+.+.+||.+.
T Consensus        82 ~G----~~~~~~~G~~~~~~~~~~i~~a  105 (107)
T d1a8la2          82 NG----EDRVEFEGAYPEKMFLEKLLSA  105 (107)
T ss_dssp             TT----EEEEEEESCCCHHHHHHHHHHH
T ss_pred             CC----eEEEEEECCCCHHHHHHHHHHh
Confidence            88    4677889999999999999875

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.57  E-value=2.1e-15  Score=110.29  Aligned_cols=83  Identities=23%  Similarity=0.356  Sum_probs=75.1

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCC
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRT  235 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~  235 (461)
                      +++.++.||++||++|+.+.|.|.++++.+.+.+.+..+|++.+++++++|+|.++||++++++|        .+.|..+
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g--------~~~G~~~   73 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDV--------EFIGAPT   73 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEE--------ECCSSSS
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCc--------EEECCCC
Confidence            46788999999999999999999999999988899999999999999999999999999887654        2568889


Q ss_pred             HHHHHHHHHhh
Q psy17502        236 SQDIVTWALNK  246 (461)
Q Consensus       236 ~~~i~~fi~~~  246 (461)
                      .++|.+||.++
T Consensus        74 ~~~l~~~i~~~   84 (85)
T d1fo5a_          74 KEALVEAIKKR   84 (85)
T ss_dssp             SHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.54  E-value=2.2e-14  Score=111.18  Aligned_cols=101  Identities=11%  Similarity=0.143  Sum_probs=86.0

Q ss_pred             ceeEcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc----HhhhhhcCcccccEE
Q psy17502        139 AVVELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH----QRIAGEFNIRGYPTI  214 (461)
Q Consensus       139 ~v~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~----~~l~~~~~i~~~P~i  214 (461)
                      .+..++.+++.+.+ +++++++|+||++||++|+.+.|.+.++++.+...+.+..++...+    ++++++|+|.++||+
T Consensus        10 ~~~~~t~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTl   88 (115)
T d1zmaa1          10 DLEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGF   88 (115)
T ss_dssp             TSEECCHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEE
T ss_pred             eeeeCCHHHHHHHH-hcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEE
Confidence            46677888888775 7788999999999999999999999999999987777776654332    467899999999999


Q ss_pred             EEEcCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502        215 KFFSPGSRSASDAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       215 ~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~  244 (461)
                      ++|++|    ....++.|..+.++|.+||.
T Consensus        89 i~~~~g----k~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          89 VHITDG----QINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEETT----EEEEECCTTCCHHHHHHHHT
T ss_pred             EEEECC----EEEEEEcCCCCHHHHHHHHc
Confidence            999988    46788999999999999983

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1e-14  Score=115.00  Aligned_cols=104  Identities=11%  Similarity=0.132  Sum_probs=92.6

Q ss_pred             eeEcChhhhhhhhhcCC-CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCc-eEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        140 VVELTDSNFEKLVYNSD-DIWLVEFFAPWCGHCKNLEPHWEKAASELEGK-VKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ...++.++++.++.+.. .++++.|+++||++|+.+.+.+.++++.+.+. +.++.||++.+++++++|+|.++||+++|
T Consensus        19 ~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~~   98 (132)
T d2hfda1          19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVF   98 (132)
T ss_dssp             CEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEEE
T ss_pred             CcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEEE
Confidence            55788999998775543 57788899999999999999999999999874 78999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                      ++|    .....+.|.++.+++.++|....
T Consensus        99 ~~G----~~v~~~~G~~~~~~l~~~i~~ll  124 (132)
T d2hfda1          99 TGG----NYRGVLNGIHPWAELINLMRGLV  124 (132)
T ss_dssp             ETT----EEEEEECCCSCHHHHHHHHHHHH
T ss_pred             EcC----cEeeeecCCCCHHHHHHHHHHHh
Confidence            988    56778999999999999998765

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=3.7e-14  Score=110.50  Aligned_cols=95  Identities=18%  Similarity=0.373  Sum_probs=73.7

Q ss_pred             cchhHHHh-cCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCC----chhhHhhcCCCCccEEEEE
Q psy17502         24 SNFDDKVI-KSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADE----EKSLSSSHGVTGFPTVKIF   95 (461)
Q Consensus        24 ~~f~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~P~l~~~   95 (461)
                      ++++..+. .++++++|.|||+||++|+.+.|.+   .++++.+.+ +.+..+|...    +.+++++|+|.++||+++|
T Consensus        11 ~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~   89 (117)
T d2fwha1          11 DELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD-TVLLQANVTANDAQDVALLKHLNVLGLPTILFF   89 (117)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccc-eEEEecccccchhHHHHHHhhhehhhceEEEEE
Confidence            44554222 3567999999999999999999998   555555544 6677777654    4578999999999999999


Q ss_pred             c-CCCCCc--cccCCcchhHHHHHHHH
Q psy17502         96 S-DKRNPT--PYQGARTADAIIDVALE  119 (461)
Q Consensus        96 ~-~g~~~~--~y~g~~~~~~i~~~i~~  119 (461)
                      . +|+...  ++.|.++++.+.++|++
T Consensus        90 ~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          90 DGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             CTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             eCCCcEEecccccccCCHHHHHHHHhc
Confidence            6 665543  56899999999999975

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3e-14  Score=113.03  Aligned_cols=77  Identities=14%  Similarity=0.233  Sum_probs=71.1

Q ss_pred             Chhhhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCC
Q psy17502        144 TDSNFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG  220 (461)
Q Consensus       144 ~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~  220 (461)
                      +.+++++.+.. .+++++|.|+++||++|+.+.|.+.++|+.+.+.+.|+.||++++++++++|+|.++||+++|++|
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g   86 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   86 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEEEeCC
Confidence            56688887754 467999999999999999999999999999998999999999999999999999999999999988

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.52  E-value=1e-14  Score=113.17  Aligned_cols=103  Identities=14%  Similarity=0.170  Sum_probs=78.1

Q ss_pred             eeEcChhhhhhhhhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcccHhhhhhcCcccccEEEEE
Q psy17502        140 VVELTDSNFEKLVYNS-DDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATVHQRIAGEFNIRGYPTIKFF  217 (461)
Q Consensus       140 v~~l~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~  217 (461)
                      ...++..+++.++... +.++++.|+++||++|+.+.|.+.++++.+.+ ++.++.+|++.+++++++|||.++||+++|
T Consensus        13 ~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~~   92 (119)
T d2es7a1          13 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVF   92 (119)
T ss_dssp             CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEE
T ss_pred             CceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEEE
Confidence            5567888888776443 45677889999999999999999999999976 699999999999999999999999999999


Q ss_pred             cCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        218 SPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       218 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ++|    .....+.|..+.+++.++|+..
T Consensus        93 ~~G----~~v~~~~G~~~~~~l~~~i~~l  117 (119)
T d2es7a1          93 TDG----KLRGALSGIHPWAELLTLMRSI  117 (119)
T ss_dssp             SCC--------CEESCCCHHHHHHHHHHH
T ss_pred             EcC----eEEEEeeCCCCHHHHHHHHHHH
Confidence            988    5677899999999999999763

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.52  E-value=9.6e-15  Score=106.46  Aligned_cols=81  Identities=17%  Similarity=0.286  Sum_probs=72.4

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHH
Q psy17502        159 WLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQD  238 (461)
Q Consensus       159 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~  238 (461)
                      .++.||++||++|+.+.+.|++++..+.+.+.|+.+|++++++++++|+|.++||++++..        ..|.|..+.+.
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~--------~~~~G~~~~~~   75 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAINGV--------VRFVGAPSREE   75 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEETTT--------EEEECSSCCHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEECCc--------EEEEcCCCHHH
Confidence            4567999999999999999999999998899999999999999999999999999877322        35789999999


Q ss_pred             HHHHHHhhc
Q psy17502        239 IVTWALNKY  247 (461)
Q Consensus       239 i~~fi~~~~  247 (461)
                      |.+||.++.
T Consensus        76 l~~~i~~~l   84 (85)
T d1nhoa_          76 LFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998764

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=7.8e-13  Score=103.27  Aligned_cols=108  Identities=16%  Similarity=0.214  Sum_probs=88.0

Q ss_pred             eeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCcc
Q psy17502        257 KQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPA  336 (461)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~  336 (461)
                      .+++.++...++..+.|++++++.      +.++.+.++..++++|++|++++ .|+++|...+...++.||+.. +.|+
T Consensus         3 gei~~~~~~~y~~~~~Pl~~~f~~------~~~~~~~~~~~~~~vAk~fkgki-~Fv~~D~~~~~~~l~~fgl~e-~~P~   74 (125)
T d2b5ea3           3 GEIDGSVFAQYVESGLPLGYLFYN------DEEELEEYKPLFTELAKKNRGLM-NFVSIDARKFGRHAGNLNMKE-QFPL   74 (125)
T ss_dssp             CBCCHHHHHHHHHTTSCEEEEEES------SHHHHHHHHHHHHHHHHHTTTTC-EEEEEEHHHHTTHHHHTTCCS-CSSE
T ss_pred             CccCHHHHHHHHhcCCCEEEEEeC------ChHHHHHHHHHHHHHHHHhcCee-EEEEEchHHhHHHHHHcCCCc-cCCc
Confidence            456667777777677777766542      35678899999999999999997 777778777888999999985 7999


Q ss_pred             EEEEccCc-cccccC------------CCCCCHHHHHHHHHHHhcCCCC
Q psy17502        337 MAVLNAKK-MKYSLL------------KGPFSYDGINEFLRDLSYGRGH  372 (461)
Q Consensus       337 l~i~~~~~-~k~~~~------------~~~~~~~~i~~Fi~~~~~Gkl~  372 (461)
                      ++|++..+ .||.+.            .+++|.++|.+|++++++||++
T Consensus        75 ~~i~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKlk  123 (125)
T d2b5ea3          75 FAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDAS  123 (125)
T ss_dssp             EEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCC
T ss_pred             EEEEecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCcC
Confidence            99998765 677653            4689999999999999999995

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.40  E-value=1.1e-12  Score=97.59  Aligned_cols=89  Identities=19%  Similarity=0.253  Sum_probs=73.1

Q ss_pred             hhhhhhhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCc
Q psy17502        147 NFEKLVYN-SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSAS  225 (461)
Q Consensus       147 ~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~  225 (461)
                      ++.+.+.+ .....++.|+++||++|+.+.|.+.++|... +.+.|..+|++.+++++++|+|.++||+++  +|     
T Consensus         5 ~~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~-~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng-----   76 (96)
T d1hyua4           5 SLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN-PRIKHTAIDGGTFQNEITERNVMGVPAVFV--NG-----   76 (96)
T ss_dssp             HHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-TTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TT-----
T ss_pred             HHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC-CceEEEEEecccchHHHhhcccccccEEEE--CC-----
Confidence            34444433 3456788899999999999999999999765 579999999999999999999999999865  44     


Q ss_pred             CcccccCCCCHHHHHHHHH
Q psy17502        226 DAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       226 ~~~~y~g~~~~~~i~~fi~  244 (461)
                      . ..|.|..+.++|+++|.
T Consensus        77 ~-~~~~G~~~~~~l~~~le   94 (96)
T d1hyua4          77 K-EFGQGRMTLTEIVAKVD   94 (96)
T ss_dssp             E-EEEESCCCHHHHHHHHC
T ss_pred             E-EEEecCCCHHHHHHHHh
Confidence            2 34789999999998873

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.6e-13  Score=102.87  Aligned_cols=100  Identities=12%  Similarity=0.172  Sum_probs=78.3

Q ss_pred             eeEcChhhhhhhhhc-CCCeEEEEEeCC-------CChhhhhhhHHHHHHHHHhcCceEEEEEeCc-------ccHhhhh
Q psy17502        140 VVELTDSNFEKLVYN-SDDIWLVEFFAP-------WCGHCKNLEPHWEKAASELEGKVKLGAVDAT-------VHQRIAG  204 (461)
Q Consensus       140 v~~l~~~~~~~~~~~-~~~~~~v~f~~~-------~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-------~~~~l~~  204 (461)
                      +...+.++|.+.+.+ .+++++|.|+|+       ||++|+.+.|.+.++++.+.+.+.|+.||++       .+..++.
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~   83 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK   83 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHH
Confidence            445677888887754 346899999995       9999999999999999999888999999974       4456888


Q ss_pred             hcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502        205 EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       205 ~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~  244 (461)
                      +|+|.++||+++|+++.    ....+.+ .+.+.+..|+.
T Consensus        84 ~~~V~~iPT~i~~~~g~----~l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          84 NLKVTAVPTLLKYGTPQ----KLVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHCCCSSSEEEETTSSC----EEEGGGG-GCHHHHHHHHH
T ss_pred             hCCeEEEEEEEEEECCe----EEeeeec-CCHHHHHHHhc
Confidence            99999999999999873    3333333 35566655553

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=5.8e-13  Score=114.72  Aligned_cols=102  Identities=17%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             CCceEcCc-cchhHHHhcCC--CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEE
Q psy17502         16 SDVIKLTT-SNFDDKVIKSD--EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTV   92 (461)
Q Consensus        16 ~~v~~l~~-~~f~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l   92 (461)
                      ..|.+++. ++|.+.+-+.+  ..++|.||+|||++|+.+.|.|.++|.++.. +.|++||+++.+ +..+|+|.++|||
T Consensus        99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-vkF~ki~~~~~~-~~~~~~i~~lPtl  176 (217)
T d2trcp_          99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRASNTG-AGDRFSSDVLPTL  176 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-SEEEEEEHHHHT-CSTTSCGGGCSEE
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-ceEEEEccccch-hHHhCCCCCCCeE
Confidence            46889964 77988443333  3799999999999999999999999999865 999999998765 6689999999999


Q ss_pred             EEEcCCCCCccccCC-------cchhHHHHHHHH
Q psy17502         93 KIFSDKRNPTPYQGA-------RTADAIIDVALE  119 (461)
Q Consensus        93 ~~~~~g~~~~~y~g~-------~~~~~i~~~i~~  119 (461)
                      ++|++|..+..+.|.       .+..+|..+|.+
T Consensus       177 ~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~  210 (217)
T d2trcp_         177 LVYKGGELISNFISVAEQFAEDFFAADVESFLNE  210 (217)
T ss_dssp             EEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHT
T ss_pred             EEEECCEEEEEEECccccccccCCHHHHHHHHHH
Confidence            999999776666553       344556665544

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=5.2e-12  Score=100.87  Aligned_cols=98  Identities=13%  Similarity=0.201  Sum_probs=74.8

Q ss_pred             cchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC-----------------------chhh
Q psy17502         24 SNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE-----------------------EKSL   80 (461)
Q Consensus        24 ~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~-----------------------~~~l   80 (461)
                      +.+....+.++++++|.|||+||++|+..+|.+.++++..   +.+..++.+.                       +..+
T Consensus        10 ~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~---~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   86 (136)
T d1z5ye1          10 QFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQG---IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGML   86 (136)
T ss_dssp             CEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHTT---CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHH
T ss_pred             cEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhhh---hhhcccccccchhhhHHHHHHcCCccceeecccchhH
Confidence            3444435667889999999999999999999999987642   3344344332                       2248


Q ss_pred             HhhcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHhhh
Q psy17502         81 SSSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        81 ~~~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      ++.|++.++|+.+++. +|+....+.|..+.+.+.+.|.+.+...
T Consensus        87 ~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~kl  131 (136)
T d1z5ye1          87 GLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKY  131 (136)
T ss_dssp             HHHHTCCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHHHH
T ss_pred             HHhcccCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHHHH
Confidence            8899999999998886 7766678899999998888888776544

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.25  E-value=2.1e-11  Score=96.97  Aligned_cols=87  Identities=20%  Similarity=0.288  Sum_probs=70.0

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch-----------------------hhHhhcCCCCc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK-----------------------SLSSSHGVTGF   89 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~i~~~   89 (461)
                      .+++++|.||++||++|+...|.+.++++++++ +.++.|+..+..                       .+.+.||+.++
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~  102 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc-cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCcc
Confidence            468999999999999999999999999999865 555555544322                       47888999999


Q ss_pred             cEEEEEcCCCCCccccCCcchhHHHHHHHHH
Q psy17502         90 PTVKIFSDKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        90 P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                      |+++++...+.+..+.|..+.+++.+.|...
T Consensus       103 P~~~iiD~~G~i~~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         103 PAYAFVDPHGNVDVVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             SEEEEECTTCCEEEEESCCCHHHHHHHHHHH
T ss_pred             CeEEEECCCCeEEEEECCCCHHHHHHHHHhh
Confidence            9999997434566678999999988887653

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.21  E-value=3.7e-11  Score=96.73  Aligned_cols=102  Identities=15%  Similarity=0.245  Sum_probs=78.5

Q ss_pred             ceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC--------------------
Q psy17502         18 VIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE--------------------   76 (461)
Q Consensus        18 v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~--------------------   76 (461)
                      +..++.+...- -..++++++|.|||+||++|+...|.+.++.++++. .+.+..|..+.                    
T Consensus         8 l~~~~~~~~~l-~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (143)
T d2fy6a1           8 LKTADNRPASV-YLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYP   86 (143)
T ss_dssp             CEETTSCBGGG-GCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             eECCCCCEeeH-HHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCc
Confidence            34444444443 345678999999999999999999999999998864 46666665431                    


Q ss_pred             --------chhhHhhcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHH
Q psy17502         77 --------EKSLSSSHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEA  120 (461)
Q Consensus        77 --------~~~l~~~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~  120 (461)
                              +..+++.|++.++|+++++. +|+....+.|..+.+.+.+++++.
T Consensus        87 ~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1          87 KLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             TSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             ccccccccchHHHHHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence                    12478899999999999996 776667889999999999888753

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=6.4e-11  Score=91.66  Aligned_cols=100  Identities=18%  Similarity=0.316  Sum_probs=72.4

Q ss_pred             Chhhhhhhhh-cCCCeEEEEEeCCCChhhhhhhHHHH---HHHHHhcCceEEEEEeCc----ccHhhhhhcCcccccEEE
Q psy17502        144 TDSNFEKLVY-NSDDIWLVEFFAPWCGHCKNLEPHWE---KAASELEGKVKLGAVDAT----VHQRIAGEFNIRGYPTIK  215 (461)
Q Consensus       144 ~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~i~f~~v~~~----~~~~l~~~~~i~~~P~i~  215 (461)
                      +.++++..+. ..+++++|.||++||++|+.+.+.+.   ++++.+ ..+.+..++..    .+.+++++|+|.++|+++
T Consensus         9 ~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~   87 (117)
T d2fwha1           9 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL-ADTVLLQANVTANDAQDVALLKHLNVLGLPTIL   87 (117)
T ss_dssp             SHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT-TTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEE
T ss_pred             CHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhc-cceEEEecccccchhHHHHHHhhhehhhceEEE
Confidence            3445554443 34679999999999999999998874   444444 35666666643    356789999999999999


Q ss_pred             EEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        216 FFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       216 ~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      +|.+.++. ....++.|.++.+.+.+||++
T Consensus        88 ~~~~~G~~-~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          88 FFDGQGQE-HPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             EECTTSCB-CGGGCBCSCCCHHHHHHHHHH
T ss_pred             EEeCCCcE-EecccccccCCHHHHHHHHhc
Confidence            99754320 112356799999999999975

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.5e-11  Score=95.33  Aligned_cols=94  Identities=11%  Similarity=0.076  Sum_probs=76.4

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHH---HHHHHHcCCceEEEEEecCCc--hhhHhhcCCCCccEEEEEc--CCCCCc
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEY---MKLATALKGVVKVGAVNADEE--KSLSSSHGVTGFPTVKIFS--DKRNPT  102 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~a~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~P~l~~~~--~g~~~~  102 (461)
                      ..++++++||+|+++||++|+.+....   .++.+.++..+.+..||.+..  ..++++|+|.++|+++++.  .|+.+ 
T Consensus        38 Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v-  116 (147)
T d2dlxa1          38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKL-  116 (147)
T ss_dssp             HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCC-
T ss_pred             HHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEe-
Confidence            456789999999999999999997755   566666666789999998765  7799999999999999996  45554 


Q ss_pred             cccCCcchhHHHHHHHHHHhhh
Q psy17502        103 PYQGARTADAIIDVALEAIRQK  124 (461)
Q Consensus       103 ~y~g~~~~~~i~~~i~~~~~~~  124 (461)
                      +.-|..+.++++..+++.+...
T Consensus       117 ~~~~~~~~~~fl~~L~~fl~~~  138 (147)
T d2dlxa1         117 VEWHQLDVSSFLDQVTGFLGEH  138 (147)
T ss_dssp             EEESSCCHHHHHHHHHHHHHHT
T ss_pred             cccCCCCHHHHHHHHHHHHhhC
Confidence            4456688999999888887644

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=8.9e-11  Score=93.15  Aligned_cols=98  Identities=15%  Similarity=0.296  Sum_probs=73.0

Q ss_pred             EcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch---------------------
Q psy17502         20 KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK---------------------   78 (461)
Q Consensus        20 ~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~---------------------   78 (461)
                      .++.+.+.-.-+ ++++++|.||++||++|+...|.+.+++++.++ +.++.|+.+++.                     
T Consensus        11 ~~~G~~~~l~~~-~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~   88 (134)
T d1lu4a_          11 TLSGAPFDGASL-QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA-VTFVGIATRADVGAMQSFVSKYNLNFTNLNDAD   88 (134)
T ss_dssp             BTTSCEEEGGGG-TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHHTCCSEEEECTT
T ss_pred             CCCCCEEcHHHh-CCCEEEEEEeecccCCceecchhHHHHhhhhcc-ccccccccccchhhhhhhhhhhccccceeeCch
Confidence            444444443112 567999999999999999999999999998765 777777776432                     


Q ss_pred             -hhHhhcCCCCccEEEEEc-CCCCC--ccccCCcchhHHHHHHHH
Q psy17502         79 -SLSSSHGVTGFPTVKIFS-DKRNP--TPYQGARTADAIIDVALE  119 (461)
Q Consensus        79 -~l~~~~~i~~~P~l~~~~-~g~~~--~~y~g~~~~~~i~~~i~~  119 (461)
                       .+++.|++.++|+++++. +|...  ....|..+.+++.+.|..
T Consensus        89 ~~~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          89 GVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             SHHHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence             488889999999999997 55322  344677888888877653

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.17  E-value=9.3e-11  Score=94.22  Aligned_cols=90  Identities=10%  Similarity=0.166  Sum_probs=73.7

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc---------------------------hhhHh
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE---------------------------KSLSS   82 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~---------------------------~~l~~   82 (461)
                      -..++++++|+||++||++|+...|.+.++++++++++.++.|+.+..                           ..+++
T Consensus        25 ~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~  104 (143)
T d2b5xa1          25 QLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTD  104 (143)
T ss_dssp             HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHH
T ss_pred             HHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHH
Confidence            445778999999999999999999999999999988888888876321                           13777


Q ss_pred             hcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHH
Q psy17502         83 SHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        83 ~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~  119 (461)
                      .|++.++|+++++. +|.....+.|..+.+.+.+-+.+
T Consensus       105 ~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         105 AFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             HTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             HcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            89999999999986 67666778898888888877654

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.16  E-value=2.6e-11  Score=97.66  Aligned_cols=91  Identities=19%  Similarity=0.248  Sum_probs=71.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC---------------------CchhhHhhcCCCCccE
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD---------------------EEKSLSSSHGVTGFPT   91 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~---------------------~~~~l~~~~~i~~~P~   91 (461)
                      ++++++|.||++||++|+..+|.+.++.+.++..+..+.++-.                     .+..+.+.|++.++|+
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  109 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE  109 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccce
Confidence            5689999999999999999999999988766433333322211                     1234888999999999


Q ss_pred             EEEEc-CCCCCccccCCcchhHHHHHHHHHHhh
Q psy17502         92 VKIFS-DKRNPTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        92 l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      ++++. +|+....+.|..+.+++.+.+.+.+..
T Consensus       110 ~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~k  142 (144)
T d1knga_         110 TFVVGREGTIVYKLVGPITPDNLRSVLLPQMEK  142 (144)
T ss_dssp             EEEECTTSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred             EEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            99987 777777889999999999988887654

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.9e-11  Score=93.96  Aligned_cols=92  Identities=15%  Similarity=0.224  Sum_probs=68.1

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHH--cCCceEEEEEecCCchhhHhhc-CCCCccEEEEEc-CCCCCcccc
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATA--LKGVVKVGAVNADEEKSLSSSH-GVTGFPTVKIFS-DKRNPTPYQ  105 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~--~~~~v~~~~vd~~~~~~l~~~~-~i~~~P~l~~~~-~g~~~~~y~  105 (461)
                      ..++++++||.|||+||++|+.+.|.+.+..+.  +..++.++.||+++.+.++..+ ...++|+++++. +|+....+.
T Consensus        21 A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~  100 (135)
T d1sena_          21 AAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEII  100 (135)
T ss_dssp             HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTCC
T ss_pred             HHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeEEEEec
Confidence            567889999999999999999999998655442  3346899999999888877654 455689999997 666555555


Q ss_pred             C----------CcchhHHHHHHHHHH
Q psy17502        106 G----------ARTADAIIDVALEAI  121 (461)
Q Consensus       106 g----------~~~~~~i~~~i~~~~  121 (461)
                      |          ..+.+.+.+-+++.+
T Consensus       101 g~~~~~~~~~~~~~~~~~~~~~~~a~  126 (135)
T d1sena_         101 NENGNPSYKYFYVSAEQVVQGMKEAQ  126 (135)
T ss_dssp             CTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             CCCCCcchhccCCCHHHHHHHHHHHH
Confidence            5          334455555555544

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.13  E-value=1.3e-10  Score=93.24  Aligned_cols=64  Identities=19%  Similarity=0.324  Sum_probs=55.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC--ceEEEEEecCCch------------------------hhHhhcCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG--VVKVGAVNADEEK------------------------SLSSSHGV   86 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~i   86 (461)
                      ++++++|+|||+||++|+..+|.+.++++++++  .+.++.|+.++..                        .+++.|+|
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            578999999999999999999999999999865  4778888877553                        26788999


Q ss_pred             CCccEEEEEc
Q psy17502         87 TGFPTVKIFS   96 (461)
Q Consensus        87 ~~~P~l~~~~   96 (461)
                      .++|+++++.
T Consensus       107 ~~iPt~~lid  116 (144)
T d1i5ga_         107 KSIPTLVGVE  116 (144)
T ss_dssp             CSSSEEEEEE
T ss_pred             CCcCEEEEEe
Confidence            9999999987

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.6e-10  Score=85.72  Aligned_cols=105  Identities=12%  Similarity=0.305  Sum_probs=85.3

Q ss_pred             Ec-ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCC
Q psy17502        142 EL-TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPG  220 (461)
Q Consensus       142 ~l-~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~  220 (461)
                      .| +.++++++ ++.+++++|+|+.+.   .......|.++|+.++ .+.|+++   .+.++++++++.. |+|++|++.
T Consensus         4 ~l~~~~~~e~f-~~~~~v~VVGfF~~~---~~~~~~~F~~~A~~~~-d~~F~~t---~~~~v~~~~~v~~-~~Ivl~k~~   74 (110)
T d1bjxa_           4 TLPDGAAAESL-VESSEVAVIGFFKDV---ESDSAKQFLQAAEAID-DIPFGIT---SNSDVFSKYQLDK-DGVVLFKKF   74 (110)
T ss_dssp             ECCSHHHHHHH-HHHSSEEEEEECTTT---TSHHHHHHHHHHHHCS-SSCEEEE---CCSHHHHHTTCSS-CEEEEEESS
T ss_pred             EcCCHHHHHHH-hccCCeEEEEEEcCC---CchHHHHHHHHHHhCc-CceEEEE---CCHHHHHHcCCCC-CeEEEeccC
Confidence            44 45566665 477899999999864   4567889999999995 6899986   5667889999985 999999987


Q ss_pred             CCCCcCcccccCCCCHHHHHHHHHhhccCCCCCCcceeecCHH
Q psy17502        221 SRSASDAQEYNGGRTSQDIVTWALNKYTENVPPPEIKQIVSEA  263 (461)
Q Consensus       221 ~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~p~v~~~~~~~  263 (461)
                      .   +....|.|+.+.++|.+||..+.     .|+|.+++.++
T Consensus        75 d---e~~~~~~~~~~~~~l~~fi~~~~-----~PlV~e~~~e~  109 (110)
T d1bjxa_          75 D---EGRNNFEGEVTKENLLDFIKHNQ-----LPLVIEFTEQT  109 (110)
T ss_dssp             S---SSBCCCCSCCCHHHHHHHHHHHS-----SCCCSSCCCTT
T ss_pred             C---ccccccCCCCCHHHHHHHHHHcC-----cCcEEecCCCC
Confidence            4   35566789999999999999988     89999997653

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.07  E-value=3.3e-10  Score=90.21  Aligned_cols=86  Identities=20%  Similarity=0.302  Sum_probs=71.7

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCch----------------------hhHhhcCCCCc
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEEK----------------------SLSSSHGVTGF   89 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~~----------------------~l~~~~~i~~~   89 (461)
                      .+++++|.||++||++|+...+.+.++.+++.+ .+.+..|++++.+                      .+++.|++.++
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            567999999999999999999999999999875 4888888876543                      37788999999


Q ss_pred             cEEEEEc-CCCCCccccCCcchhHHHHHHH
Q psy17502         90 PTVKIFS-DKRNPTPYQGARTADAIIDVAL  118 (461)
Q Consensus        90 P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~  118 (461)
                      |+++++. +|....++.|..+.+.+.++++
T Consensus       104 P~~~liD~~G~i~~~~~G~~~~~~~~~~l~  133 (137)
T d1st9a_         104 PTTFLINPEGKVVKVVTGTMTESMIHDYMN  133 (137)
T ss_dssp             CEEEEECTTSEEEEEEESCCCHHHHHHHHH
T ss_pred             ceEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence            9999997 6666677889988888777664

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.01  E-value=5.7e-10  Score=89.52  Aligned_cols=64  Identities=20%  Similarity=0.403  Sum_probs=55.5

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC--ceEEEEEecCCch------------------------hhHhhcCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG--VVKVGAVNADEEK------------------------SLSSSHGV   86 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~i   86 (461)
                      ++++++|+|||+||++|+..+|.+.++++++..  .+.++.|+.++..                        ++.+.|+|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            578999999999999999999999999999853  4888888876543                        26788999


Q ss_pred             CCccEEEEEc
Q psy17502         87 TGFPTVKIFS   96 (461)
Q Consensus        87 ~~~P~l~~~~   96 (461)
                      .++|+++++.
T Consensus       107 ~~~Pt~~lID  116 (144)
T d1o73a_         107 ESIPTLITIN  116 (144)
T ss_dssp             CSSSEEEEEE
T ss_pred             CcCCEEEEEE
Confidence            9999999997

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.98  E-value=2.2e-09  Score=79.07  Aligned_cols=94  Identities=14%  Similarity=0.251  Sum_probs=77.4

Q ss_pred             ChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCC
Q psy17502        144 TDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRS  223 (461)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~  223 (461)
                      +.++++.++...+++++|+|+.+.   .......|.++|..+++.+.||++   .+.++++++|+. .|+|++|++..  
T Consensus         6 ~~~e~~~F~~~~d~v~VvGfF~~~---~~~~~~~F~~~A~~~rd~~~F~~t---~d~~va~~~~v~-~~~vvlfr~fd--   76 (102)
T d1a8ya2           6 GERELQAFENIEDEIKLIGYFKNK---DSEHYKAFKEAAEEFHPYIPFFAT---FDSKVAKKLTLK-LNEIDFYEAFM--   76 (102)
T ss_dssp             SHHHHHHHTTCCSSCEEEEECSST---TCHHHHHHHHHHHHHTTTSCEEEE---CCHHHHHHHCCC-TTCEEEECTTC--
T ss_pred             CHHHHHHHhccCCCEEEEEEECCC---CcHHHHHHHHHHHHcCCCceEEEE---CCHHHHHHcCCC-CCCEEEeeecC--
Confidence            445666665336789999999864   356789999999999999999997   678999999997 59999999974  


Q ss_pred             CcCcccccCC-CCHHHHHHHHHhhc
Q psy17502        224 ASDAQEYNGG-RTSQDIVTWALNKY  247 (461)
Q Consensus       224 ~~~~~~y~g~-~~~~~i~~fi~~~~  247 (461)
                       +....|+|. .+.++|.+||..|.
T Consensus        77 -e~~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          77 -EEPVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             -SSEEECSSSSCCHHHHHHHHHHTC
T ss_pred             -CCceecCCCCCCHHHHHHHHHHhc
Confidence             367788985 89999999998864

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=6.3e-10  Score=95.32  Aligned_cols=108  Identities=18%  Similarity=0.190  Sum_probs=81.8

Q ss_pred             CceeEcC-hhhhhhhhhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEE
Q psy17502        138 KAVVELT-DSNFEKLVYNS--DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTI  214 (461)
Q Consensus       138 ~~v~~l~-~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i  214 (461)
                      ..+..++ .++|.+.+.+.  +..++|.||++||++|+.+.+.+..+|..+ +.++|+.++++..+ +..+|++.+.||+
T Consensus        99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~-~~vkF~ki~~~~~~-~~~~~~i~~lPtl  176 (217)
T d2trcp_          99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY-PMVKFCKIRASNTG-AGDRFSSDVLPTL  176 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTC-TTSEEEEEEHHHHT-CSTTSCGGGCSEE
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhc-ccceEEEEccccch-hHHhCCCCCCCeE
Confidence            3577885 57788877544  346889999999999999999999999988 46999999876543 5689999999999


Q ss_pred             EEEcCCCCCCc--CcccccC-CCCHHHHHHHHHhhc
Q psy17502        215 KFFSPGSRSAS--DAQEYNG-GRTSQDIVTWALNKY  247 (461)
Q Consensus       215 ~~~~~~~~~~~--~~~~y~g-~~~~~~i~~fi~~~~  247 (461)
                      ++|++|..-..  .....-| +.+.++|..|+.++-
T Consensus       177 ~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~g  212 (217)
T d2trcp_         177 LVYKGGELISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             EEEECCEEEEEEECccccccccCCHHHHHHHHHHcC
Confidence            99999831110  1111222 467889988887753

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=1.3e-10  Score=86.40  Aligned_cols=83  Identities=6%  Similarity=0.042  Sum_probs=68.5

Q ss_pred             cCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchh
Q psy17502         32 KSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTAD  111 (461)
Q Consensus        32 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~  111 (461)
                      +..-++++.|+++||++|+.+.+.+++++.++.  ..++.+|.+++++|.++|+++ +|++++  +|+..  ..|..+.+
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~--~~g~~d~~   85 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLPENSTWYERYKFD-IPVFHL--NGQFL--MMHRVNTS   85 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEE--EESSCCHH
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccccCHHHHHHhccc-CCceee--cCceE--EeCCCCHH
Confidence            345589999999999999999999998876664  567889999999999999998 998765  55443  56888999


Q ss_pred             HHHHHHHHHH
Q psy17502        112 AIIDVALEAI  121 (461)
Q Consensus       112 ~i~~~i~~~~  121 (461)
                      .|.++|++..
T Consensus        86 ~L~~~L~~l~   95 (100)
T d1wjka_          86 KLEKQLRKLS   95 (100)
T ss_dssp             HHHHHHHSSS
T ss_pred             HHHHHHHHHh
Confidence            9999987643

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.91  E-value=2.3e-09  Score=85.97  Aligned_cols=70  Identities=20%  Similarity=0.347  Sum_probs=57.6

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC--ceEEEEEecCCch------------------------hhHhhcCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG--VVKVGAVNADEEK------------------------SLSSSHGV   86 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~i   86 (461)
                      .+++++|+||++||++|+..+|.+.++++++..  .+.++.|+.++..                        ++.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            568999999999999999999999999999864  3777777776432                        37888999


Q ss_pred             CCccEEEEEc-CCCCCc
Q psy17502         87 TGFPTVKIFS-DKRNPT  102 (461)
Q Consensus        87 ~~~P~l~~~~-~g~~~~  102 (461)
                      +++|+++++. +|+.+.
T Consensus       105 ~~~Pt~~liD~~~G~Vi  121 (144)
T d1o8xa_         105 ESIPTLIGVDADSGDVV  121 (144)
T ss_dssp             CSSSEEEEEETTTCCEE
T ss_pred             CcCCEEEEEeCCCCEEE
Confidence            9999999997 433443

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.88  E-value=2.8e-09  Score=89.18  Aligned_cols=75  Identities=20%  Similarity=0.352  Sum_probs=60.8

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC-----------------------------chhhHhh
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADE-----------------------------EKSLSSS   83 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~-----------------------------~~~l~~~   83 (461)
                      .+++++|.||++||++|++..|.+.++++++++++.+..|+..+                             +..++++
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            46799999999999999999999999999998888888887531                             1138889


Q ss_pred             cCCCCccEEEEEcCCCCCccccCCc
Q psy17502         84 HGVTGFPTVKIFSDKRNPTPYQGAR  108 (461)
Q Consensus        84 ~~i~~~P~l~~~~~g~~~~~y~g~~  108 (461)
                      |++.++|+++++...+. ..|.|..
T Consensus       111 ~~v~~~P~~~liD~~G~-i~y~G~i  134 (187)
T d2cvba1         111 YRALRTPEVFLFDERRL-LRYHGRV  134 (187)
T ss_dssp             TTCCEESEEEEECTTCB-EEEEECS
T ss_pred             ccccceeeEEEEcCCCe-EEEEeee
Confidence            99999999999984323 3566654

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.64  E-value=8.4e-08  Score=79.38  Aligned_cols=89  Identities=20%  Similarity=0.362  Sum_probs=65.0

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC-chh---------------------------hHhh
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE-EKS---------------------------LSSS   83 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~-~~~---------------------------l~~~   83 (461)
                      .+++++|.||++||++|+...+.+.++++.+.+ .+.++.|..+. +++                           +...
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            568999999999999999999999999998865 35666665542 111                           2233


Q ss_pred             cCCCCccEEEEEc-CCCCCccccCCc--chhHHHHHHHHHH
Q psy17502         84 HGVTGFPTVKIFS-DKRNPTPYQGAR--TADAIIDVALEAI  121 (461)
Q Consensus        84 ~~i~~~P~l~~~~-~g~~~~~y~g~~--~~~~i~~~i~~~~  121 (461)
                      +++.++|+.+++. +|....++.|..  +.++++++|+..+
T Consensus       135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         135 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence            4677899999987 665556777854  4567888777653

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1e-07  Score=75.18  Aligned_cols=88  Identities=9%  Similarity=0.055  Sum_probs=62.7

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC---------------------cccHhhhhhcCccccc
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA---------------------TVHQRIAGEFNIRGYP  212 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~---------------------~~~~~l~~~~~i~~~P  212 (461)
                      ..+++++|.|+++||++|+...|.+.++++.. -.+....++.                     +.+..+...|++.++|
T Consensus        18 ~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~-~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P   96 (136)
T d1z5ye1          18 TQGKPVLLNVWATWCPTSRAEHQYLNQLSAQG-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP   96 (136)
T ss_dssp             HSSSCEEEEEECTTCHHHHHHHHHHHHHHHTT-CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSBS
T ss_pred             cCCCEEEEEEEcCcCCCcCccccchhhhhhhh-hhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCCcc
Confidence            46789999999999999999999999886532 1122222221                     1233478889999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      +.+++...+   .....+.|..+.+.+.+.|.+
T Consensus        97 ~~~liD~~G---~i~~~~~G~~~~~~l~~~i~~  126 (136)
T d1z5ye1          97 ETFLIDGNG---IIRYRHAGDLNPRVWEEEIKP  126 (136)
T ss_dssp             EEEEECTTS---CEEEEEESCCCHHHHHHHTHH
T ss_pred             eEEEEcCCC---EEEEEEEcCCCHHHHHHHHHH
Confidence            999987653   245567898888877776654

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.57  E-value=2.2e-07  Score=72.93  Aligned_cols=86  Identities=17%  Similarity=0.371  Sum_probs=65.8

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC-----------------------cccHhhhhhcCcccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA-----------------------TVHQRIAGEFNIRGY  211 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~-----------------------~~~~~l~~~~~i~~~  211 (461)
                      .+++++|.|+++||++|+...+.+.++++.+++ +.+..+..                       +.+..+.+.|++.++
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~  102 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc-cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCcc
Confidence            367899999999999999999999999998865 33333322                       112257888999999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      |+.+++...+    ....+.|..+.++|.+.|..
T Consensus       103 P~~~iiD~~G----~i~~~~g~~~~~~l~~~i~~  132 (134)
T d1zzoa1         103 PAYAFVDPHG----NVDVVRGRMSQDELTRRVTA  132 (134)
T ss_dssp             SEEEEECTTC----CEEEEESCCCHHHHHHHHHH
T ss_pred             CeEEEECCCC----eEEEEECCCCHHHHHHHHHh
Confidence            9999997653    33445788899998888764

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.57  E-value=1.4e-07  Score=75.11  Aligned_cols=89  Identities=21%  Similarity=0.303  Sum_probs=69.0

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc----------------------------ccHhhhh
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT----------------------------VHQRIAG  204 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~----------------------------~~~~l~~  204 (461)
                      ..+++++|.|+++||++|....+.+.++.+.++. .+.+..+...                            .+..++.
T Consensus        21 ~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~  100 (143)
T d2fy6a1          21 KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQ  100 (143)
T ss_dssp             CTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred             hCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHH
Confidence            3568999999999999999999999999988763 4555444321                            1235688


Q ss_pred             hcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        205 EFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       205 ~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                      .|++.++|+++++...+   .....+.|..+.+.+.+++++
T Consensus       101 ~~~v~~~P~~~liD~~G---~i~~~~~G~~~~~~~~~~l~~  138 (143)
T d2fy6a1         101 SLNISVYPSWALIGKDG---DVQRIVKGSINEAQALALIRD  138 (143)
T ss_dssp             HTTCCSSSEEEEECTTS---CEEEEEESCCCHHHHHHHHHC
T ss_pred             HcCCCccCEEEEECCCC---EEEEEEECCCCHHHHHHHHHH
Confidence            99999999999996553   245567899999999998875

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.9e-07  Score=74.21  Aligned_cols=92  Identities=9%  Similarity=0.045  Sum_probs=67.1

Q ss_pred             hhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCceEEEEEeCccc--HhhhhhcCcccccEEEEEcCCCCCCcC
Q psy17502        152 VYNSDDIWLVEFFAPWCGHCKNLEPHW---EKAASELEGKVKLGAVDATVH--QRIAGEFNIRGYPTIKFFSPGSRSASD  226 (461)
Q Consensus       152 ~~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~i~f~~v~~~~~--~~l~~~~~i~~~P~i~~~~~~~~~~~~  226 (461)
                      ..+.+++++|+|+++||.+|+.+....   .++.+.+..++.+..++.+..  ..++++|++.++|+++++.+.+.   +
T Consensus        38 Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~g---e  114 (147)
T d2dlxa1          38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTG---Q  114 (147)
T ss_dssp             HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTC---C
T ss_pred             HHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEEEeCCCC---e
Confidence            356789999999999999999886632   335555556788888887654  77899999999999999975321   3


Q ss_pred             cccccCCCCHHHHHHHHHhh
Q psy17502        227 AQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       227 ~~~y~g~~~~~~i~~fi~~~  246 (461)
                      ....-|..+.+++++.+...
T Consensus       115 ~v~~~~~~~~~~fl~~L~~f  134 (147)
T d2dlxa1         115 KLVEWHQLDVSSFLDQVTGF  134 (147)
T ss_dssp             CCEEESSCCHHHHHHHHHHH
T ss_pred             EecccCCCCHHHHHHHHHHH
Confidence            33344567887776665543

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.55  E-value=6.4e-08  Score=79.20  Aligned_cols=76  Identities=9%  Similarity=0.156  Sum_probs=60.9

Q ss_pred             EcCccchhHHHhc-CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhc---CCCCccEEEEE
Q psy17502         20 KLTTSNFDDKVIK-SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSH---GVTGFPTVKIF   95 (461)
Q Consensus        20 ~l~~~~f~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~P~l~~~   95 (461)
                      .|+++...+ +.. +++..++.|+++||++|++..|.+.++++.++ ++.+..|+.+++++..++|   +...+|.+++.
T Consensus        40 ~l~~~~~~~-l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~  117 (166)
T d1z6na1          40 GLPSALTER-LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVL  117 (166)
T ss_dssp             CCCHHHHHH-HHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEE
T ss_pred             cccHHHHHH-HHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-CCcEEEEECccCHHHHHHHHHhccccccceeec
Confidence            355555555 333 56788999999999999999999999999875 5788889999999999998   45568888887


Q ss_pred             cC
Q psy17502         96 SD   97 (461)
Q Consensus        96 ~~   97 (461)
                      ..
T Consensus       118 d~  119 (166)
T d1z6na1         118 DE  119 (166)
T ss_dssp             CT
T ss_pred             Cc
Confidence            64

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.49  E-value=9.3e-07  Score=69.09  Aligned_cols=108  Identities=16%  Similarity=0.251  Sum_probs=88.4

Q ss_pred             CceEcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCC--CCccEEEE
Q psy17502         17 DVIKLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGV--TGFPTVKI   94 (461)
Q Consensus        17 ~v~~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i--~~~P~l~~   94 (461)
                      -|.++|.+|+.. +.+...+.+++|+... .....+...+.++|+++++++.|+.+|.++.....+.+|+  ..+|++++
T Consensus         7 Lv~e~~~~n~~~-~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i   84 (133)
T d2djka1           7 LIGEIGPETYSD-YMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAI   84 (133)
T ss_dssp             CSEECCHHHHHH-HHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEE
T ss_pred             ceeccChhhHHH-HhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCCcEEE
Confidence            478999999999 7777788888888765 3568899999999999999999999999998888899998  45999999


Q ss_pred             Ec-CCCCCccc--cCCcchhHHHHHHHHHHhhhhc
Q psy17502         95 FS-DKRNPTPY--QGARTADAIIDVALEAIRQKVK  126 (461)
Q Consensus        95 ~~-~g~~~~~y--~g~~~~~~i~~~i~~~~~~~~~  126 (461)
                      +. .++....|  .+..+.+.|.+|+.......+.
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl~  119 (133)
T d2djka1          85 QEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIE  119 (133)
T ss_dssp             ECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCC
T ss_pred             EEcCCCceecCCccccCCHHHHHHHHHHHHcCCCC
Confidence            86 33344444  4678999999999998865543

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.48  E-value=1.6e-07  Score=74.85  Aligned_cols=89  Identities=16%  Similarity=0.242  Sum_probs=66.4

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC---------------------cccHhhhhhcCcccccE
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA---------------------TVHQRIAGEFNIRGYPT  213 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~---------------------~~~~~l~~~~~i~~~P~  213 (461)
                      .+++++|.||++||++|+...+.+.++.+.....+....++.                     +.+..+.+.|++.++|+
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  109 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE  109 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccce
Confidence            468999999999999999999999988776643333333321                     12345788999999999


Q ss_pred             EEEEcCCCCCCcCcccccCCCCHHHHHHHHHhh
Q psy17502        214 IKFFSPGSRSASDAQEYNGGRTSQDIVTWALNK  246 (461)
Q Consensus       214 i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  246 (461)
                      .+++...++   ....+.|..+.+++.+.|.+.
T Consensus       110 ~~liD~~G~---i~~~~~G~~~~~~l~~~i~~~  139 (144)
T d1knga_         110 TFVVGREGT---IVYKLVGPITPDNLRSVLLPQ  139 (144)
T ss_dssp             EEEECTTSB---EEEEEESCCCHHHHHHTHHHH
T ss_pred             EEEEcCCCe---EEEEEeCCCCHHHHHHHHHHH
Confidence            999876532   445677999999988877654

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=5.7e-07  Score=71.40  Aligned_cols=88  Identities=15%  Similarity=0.220  Sum_probs=67.4

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc---------------------------ccHhhhhhc
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT---------------------------VHQRIAGEF  206 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~---------------------------~~~~l~~~~  206 (461)
                      ..++++++.|+++||++|....+.+.++.+.+++.+.+..++.+                           ....+++.|
T Consensus        27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  106 (143)
T d2b5xa1          27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (143)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHc
Confidence            45789999999999999999999999999999887777766532                           111367778


Q ss_pred             CcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502        207 NIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       207 ~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~  244 (461)
                      ++.++|+++++.+.+   .....+.|..+.+.+.+-|.
T Consensus       107 ~v~~~P~~~~id~~G---~i~~~~~G~~~~~~l~~~l~  141 (143)
T d2b5xa1         107 ENEYVPAYYVFDKTG---QLRHFQAGGSGMKMLEKRVN  141 (143)
T ss_dssp             CCCCSSEEEEECTTC---BEEEEEESCSTTHHHHHHHH
T ss_pred             CCCcCCEEEEECCCC---EEEEEEECCCCHHHHHHHHH
Confidence            888899999986542   23456678888777776654

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.44  E-value=6.8e-07  Score=70.05  Aligned_cols=88  Identities=15%  Similarity=0.320  Sum_probs=64.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc----------------------cHhhhhhcCccccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV----------------------HQRIAGEFNIRGYP  212 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~----------------------~~~l~~~~~i~~~P  212 (461)
                      .+++++|.|+++||++|....+.+.+++..++ .+.+..++.+.                      +..+++.|++.++|
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P  101 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP  101 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhc-cccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCC
Confidence            36799999999999999999999999998775 45555554322                      23578889999999


Q ss_pred             EEEEEcCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502        213 TIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       213 ~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~  244 (461)
                      +++++...++-. ......|..+.+++.+-|.
T Consensus       102 ~~~lid~~G~i~-~v~~~~g~~~~~~l~~~l~  132 (134)
T d1lu4a_         102 AFVFYRADGTST-FVNNPTAAMSQDELSGRVA  132 (134)
T ss_dssp             EEEEECTTSCEE-EECCSSSCCCHHHHHHHHH
T ss_pred             EEEEEeCCCeEE-EEeccCCCCCHHHHHHHHH
Confidence            999998653200 0122356788888887765

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=1.1e-07  Score=70.15  Aligned_cols=82  Identities=9%  Similarity=0.056  Sum_probs=66.2

Q ss_pred             cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCC
Q psy17502        154 NSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGG  233 (461)
Q Consensus       154 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~  233 (461)
                      +..-++++.|+++||+.|+.+.+.+++++..+.  ..+..+|.+.++++.++|++. .|++++  +|     +. ...|.
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg-----~~-~~~g~   81 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLPENSTWYERYKFD-IPVFHL--NG-----QF-LMMHR   81 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSSTTHHHHHHSSSS-CSEEEE--SS-----SE-EEESS
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccccCHHHHHHhccc-CCceee--cC-----ce-EEeCC
Confidence            445678999999999999999999998876664  567778888899999999997 897765  44     22 25588


Q ss_pred             CCHHHHHHHHHhh
Q psy17502        234 RTSQDIVTWALNK  246 (461)
Q Consensus       234 ~~~~~i~~fi~~~  246 (461)
                      .+.+.|.++|.+.
T Consensus        82 ~d~~~L~~~L~~l   94 (100)
T d1wjka_          82 VNTSKLEKQLRKL   94 (100)
T ss_dssp             CCHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999999764

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=9e-07  Score=69.42  Aligned_cols=69  Identities=20%  Similarity=0.365  Sum_probs=53.3

Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHH--hcCceEEEEEeCcccHhhhhhc-CcccccEEEEEcCCC
Q psy17502        153 YNSDDIWLVEFFAPWCGHCKNLEPHWEKAASE--LEGKVKLGAVDATVHQRIAGEF-NIRGYPTIKFFSPGS  221 (461)
Q Consensus       153 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~--~~~~i~f~~v~~~~~~~l~~~~-~i~~~P~i~~~~~~~  221 (461)
                      ..++++++|.|+++||++|+.+.+.+.+..+.  ...++..+.+|++.....+..+ ....+|+++++.+.+
T Consensus        22 ~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G   93 (135)
T d1sena_          22 AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSG   93 (135)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTS
T ss_pred             HHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCC
Confidence            46789999999999999999999988765442  3357888899988766665543 444589999997653

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=1.7e-06  Score=68.03  Aligned_cols=87  Identities=17%  Similarity=0.359  Sum_probs=67.3

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc----------------------cHhhhhhcCcccc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV----------------------HQRIAGEFNIRGY  211 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~----------------------~~~l~~~~~i~~~  211 (461)
                      .+++++|.|+++||++|....+.+.++.+.+.+ .+.+..++.+.                      +..++..|++.++
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            457899999999999999999999999998865 47776665322                      2246788899999


Q ss_pred             cEEEEEcCCCCCCcCcccccCCCCHHHHHHHHH
Q psy17502        212 PTIKFFSPGSRSASDAQEYNGGRTSQDIVTWAL  244 (461)
Q Consensus       212 P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~  244 (461)
                      |+++++...++   ....+.|..+.+.+.+.+.
T Consensus       104 P~~~liD~~G~---i~~~~~G~~~~~~~~~~l~  133 (137)
T d1st9a_         104 PTTFLINPEGK---VVKVVTGTMTESMIHDYMN  133 (137)
T ss_dssp             CEEEEECTTSE---EEEEEESCCCHHHHHHHHH
T ss_pred             ceEEEECCCCE---EEEEEECCCCHHHHHHHHH
Confidence            99999976632   3455679888888777664

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.32  E-value=1.1e-06  Score=69.56  Aligned_cols=65  Identities=12%  Similarity=0.246  Sum_probs=52.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCcccH------------------------hhhhhcCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVHQ------------------------RIAGEFNI  208 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--~i~f~~v~~~~~~------------------------~l~~~~~i  208 (461)
                      .+++++|.|+++||++|+...|.+.++.+.+++  .+.+..|..+...                        .+.+.|+|
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            468999999999999999999999999998864  4666666543221                        26778999


Q ss_pred             ccccEEEEEcC
Q psy17502        209 RGYPTIKFFSP  219 (461)
Q Consensus       209 ~~~P~i~~~~~  219 (461)
                      .++|+++++.+
T Consensus       107 ~~iPt~~lid~  117 (144)
T d1i5ga_         107 KSIPTLVGVEA  117 (144)
T ss_dssp             CSSSEEEEEET
T ss_pred             CCcCEEEEEeC
Confidence            99999999975

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.27  E-value=1.2e-06  Score=72.76  Aligned_cols=76  Identities=20%  Similarity=0.295  Sum_probs=61.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCc-----------------------------ccHhhhhh
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDAT-----------------------------VHQRIAGE  205 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~-----------------------------~~~~l~~~  205 (461)
                      .+++++|.|+++||++|+...+.+.++++.+++++.|..+...                             .+..++++
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            4578999999999999999999999999999888887776421                             12247889


Q ss_pred             cCcccccEEEEEcCCCCCCcCcccccCCCC
Q psy17502        206 FNIRGYPTIKFFSPGSRSASDAQEYNGGRT  235 (461)
Q Consensus       206 ~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~  235 (461)
                      |++...|+.+++.+.     ....|.|.++
T Consensus       111 ~~v~~~P~~~liD~~-----G~i~y~G~id  135 (187)
T d2cvba1         111 YRALRTPEVFLFDER-----RLLRYHGRVN  135 (187)
T ss_dssp             TTCCEESEEEEECTT-----CBEEEEECSS
T ss_pred             ccccceeeEEEEcCC-----CeEEEEeeec
Confidence            999999999999876     4556777543

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.24  E-value=2e-06  Score=68.19  Aligned_cols=66  Identities=14%  Similarity=0.338  Sum_probs=53.2

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCcccH------------------------hhhhhcCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVHQ------------------------RIAGEFNI  208 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--~i~f~~v~~~~~~------------------------~l~~~~~i  208 (461)
                      .+++++|.|+++||++|+...|.+.++++++..  .+.+..|..+...                        .+.+.|++
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            468999999999999999999999999998853  4766666543221                        36778999


Q ss_pred             ccccEEEEEcCC
Q psy17502        209 RGYPTIKFFSPG  220 (461)
Q Consensus       209 ~~~P~i~~~~~~  220 (461)
                      .++|+++++.+.
T Consensus       107 ~~~Pt~~lID~~  118 (144)
T d1o73a_         107 ESIPTLITINAD  118 (144)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CcCCEEEEEECC
Confidence            999999999753

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=3.3e-06  Score=64.81  Aligned_cols=102  Identities=15%  Similarity=0.206  Sum_probs=83.2

Q ss_pred             EcCccchhHHHhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCC-ccEEEEEcCC
Q psy17502         20 KLTTSNFDDKVIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTG-FPTVKIFSDK   98 (461)
Q Consensus        20 ~l~~~~f~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~-~P~l~~~~~g   98 (461)
                      +++.+|+.+ .++.+.+.++.|+.+.- .-..+.+.+.++|+++++++.|+.+|.++.....+.+|+.. .|.+.+....
T Consensus         4 ei~~~~~~~-y~~~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~   81 (125)
T d2b5ea3           4 EIDGSVFAQ-YVESGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMT   81 (125)
T ss_dssp             BCCHHHHHH-HHHTTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETT
T ss_pred             ccCHHHHHH-HHhcCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEecc
Confidence            578899999 77788898888998754 45679999999999999999999999998888999999865 8999887621


Q ss_pred             CCCccc---------------cCCcchhHHHHHHHHHHhhh
Q psy17502         99 RNPTPY---------------QGARTADAIIDVALEAIRQK  124 (461)
Q Consensus        99 ~~~~~y---------------~g~~~~~~i~~~i~~~~~~~  124 (461)
                       ...+|               .+..+.+.|.+|++..+...
T Consensus        82 -~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GK  121 (125)
T d2b5ea3          82 -EDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGD  121 (125)
T ss_dssp             -TTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTC
T ss_pred             -cCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCC
Confidence             11122               46789999999999987544

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.04  E-value=9.7e-06  Score=64.05  Aligned_cols=66  Identities=15%  Similarity=0.328  Sum_probs=53.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--ceEEEEEeCccc------------------------HhhhhhcCc
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG--KVKLGAVDATVH------------------------QRIAGEFNI  208 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~--~i~f~~v~~~~~------------------------~~l~~~~~i  208 (461)
                      .+++++|.|+++||++|....+.+.++++.+..  .+.+..+..+..                        ..+.+.|++
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            468999999999999999999999999999864  366655554321                        247888999


Q ss_pred             ccccEEEEEcCC
Q psy17502        209 RGYPTIKFFSPG  220 (461)
Q Consensus       209 ~~~P~i~~~~~~  220 (461)
                      .++|+++++...
T Consensus       105 ~~~Pt~~liD~~  116 (144)
T d1o8xa_         105 ESIPTLIGVDAD  116 (144)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CcCCEEEEEeCC
Confidence            999999999753

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.02  E-value=3.6e-05  Score=55.98  Aligned_cols=96  Identities=8%  Similarity=0.143  Sum_probs=71.0

Q ss_pred             eeecCHHHHHHHhc-CCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcc-eEEEecccccchhHHHhhCCCCCCC
Q psy17502        257 KQIVSEATFKEACE-DHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV-WGWIWSEAVAQPDLENVLEIGGFGY  334 (461)
Q Consensus       257 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~-f~~v~~d~~~~~~~~~~lgl~~~~~  334 (461)
                      ..+++...++.|.. ...+++++|++.       ......+.+.++|..+++.. |+.+     ....+++.+|+.   .
T Consensus         2 ~~i~~~~e~~~F~~~~d~v~VvGfF~~-------~~~~~~~~F~~~A~~~rd~~~F~~t-----~d~~va~~~~v~---~   66 (102)
T d1a8ya2           2 ELIEGERELQAFENIEDEIKLIGYFKN-------KDSEHYKAFKEAAEEFHPYIPFFAT-----FDSKVAKKLTLK---L   66 (102)
T ss_dssp             EEECSHHHHHHHTTCCSSCEEEEECSS-------TTCHHHHHHHHHHHHHTTTSCEEEE-----CCHHHHHHHCCC---T
T ss_pred             eeecCHHHHHHHhccCCCEEEEEEECC-------CCcHHHHHHHHHHHHcCCCceEEEE-----CCHHHHHHcCCC---C
Confidence            34677888888886 567899998753       11234578889999998765 5444     356789999996   5


Q ss_pred             ccEEEEccCccccccCCC-CCCHHHHHHHHHHHh
Q psy17502        335 PAMAVLNAKKMKYSLLKG-PFSYDGINEFLRDLS  367 (461)
Q Consensus       335 P~l~i~~~~~~k~~~~~~-~~~~~~i~~Fi~~~~  367 (461)
                      |+++++.+-..+...+.| .++.++|.+||++..
T Consensus        67 ~~vvlfr~fde~~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          67 NEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             TCEEEECTTCSSEEECSSSSCCHHHHHHHHHHTC
T ss_pred             CCEEEeeecCCCceecCCCCCCHHHHHHHHHHhc
Confidence            999999877644444556 599999999999864

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=5.9e-06  Score=66.26  Aligned_cols=84  Identities=17%  Similarity=0.284  Sum_probs=62.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec--------------------------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA--------------------------------------   74 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~--------------------------------------   74 (461)
                      +.+.+++.|+.+.|++|+++.|.+.++.+.   .+.+..+..                                      
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~---~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  101 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  101 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc---CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchh
Confidence            346899999999999999999999888642   222222211                                      


Q ss_pred             ------CCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHHHHhh
Q psy17502         75 ------DEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        75 ------~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                            ..+..+++++||+|+|++++ .+|+   .+.|..+.+.|.++|.+....
T Consensus       102 ~~~~~i~~~~~la~~lgv~GTPt~~~-~nG~---~v~G~~~~e~l~~~i~~~~k~  152 (156)
T d1eeja1         102 SCDVDIADHYALGVQLGVSGTPAVVL-SNGT---LVPGYQPPKEMKEFLDEHQKM  152 (156)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEEEC-TTSC---EEESCCCHHHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHcCCcCCCEEEE-eCCe---EecCCCCHHHHHHHHHHHHHH
Confidence                  11235889999999999654 5663   468999999999999887644

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=2.4e-05  Score=62.52  Aligned_cols=79  Identities=15%  Similarity=0.085  Sum_probs=55.8

Q ss_pred             hcCCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch---------------------hhHhhcCCCC
Q psy17502         31 IKSDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK---------------------SLSSSHGVTG   88 (461)
Q Consensus        31 ~~~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~---------------------~l~~~~~i~~   88 (461)
                      ..+++.+++.|| +.||+.|....+.|.+.+.+++..+.+..|+.+...                     +++++||+..
T Consensus        30 ~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~  109 (156)
T d2a4va1          30 TENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKK  109 (156)
T ss_dssp             HHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBS
T ss_pred             cCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCccceeccchHHHHHHHcCCCc
Confidence            335566666677 789999999999999999999876666667655321                     3777788766


Q ss_pred             cc------EEEEEcCCCCCccccCCcc
Q psy17502         89 FP------TVKIFSDKRNPTPYQGART  109 (461)
Q Consensus        89 ~P------~l~~~~~g~~~~~y~g~~~  109 (461)
                      .|      +.++..+|....+|.|...
T Consensus       110 ~~~~~~~r~~~i~~dg~i~~~~~~~~~  136 (156)
T d2a4va1         110 TPLSGSIRSHFIFVDGKLKFKRVKISP  136 (156)
T ss_dssp             SSSSCBCCEEEEEETTEEEEEEESCCH
T ss_pred             cccCCeeEEEEEEECCeEEEEEEEeCC
Confidence            65      4455567766666655543

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=6.9e-05  Score=55.73  Aligned_cols=97  Identities=6%  Similarity=0.176  Sum_probs=73.6

Q ss_pred             eeecCHHHHHHHhcCCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcceEEEecccccchhHHHhhCCCCCCCcc
Q psy17502        257 KQIVSEATFKEACEDHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKVWGWIWSEAVAQPDLENVLEIGGFGYPA  336 (461)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~f~~v~~d~~~~~~~~~~lgl~~~~~P~  336 (461)
                      ..+.+...++.+....++++++++..       ......+.+.++|..+++..|.++     ....+++.+|++   .|+
T Consensus         3 ~~l~~~~~~e~f~~~~~v~VVGfF~~-------~~~~~~~~F~~~A~~~~d~~F~~t-----~~~~v~~~~~v~---~~~   67 (110)
T d1bjxa_           3 TTLPDGAAAESLVESSEVAVIGFFKD-------VESDSAKQFLQAAEAIDDIPFGIT-----SNSDVFSKYQLD---KDG   67 (110)
T ss_dssp             EECCSHHHHHHHHHHSSEEEEEECTT-------TTSHHHHHHHHHHHHCSSSCEEEE-----CCSHHHHHTTCS---SCE
T ss_pred             eEcCCHHHHHHHhccCCeEEEEEEcC-------CCchHHHHHHHHHHhCcCceEEEE-----CCHHHHHHcCCC---CCe
Confidence            45678888888888899999998743       123445788999999976445444     234688889986   499


Q ss_pred             EEEEccCccccccCCCCCCHHHHHHHHHHHhc
Q psy17502        337 MAVLNAKKMKYSLLKGPFSYDGINEFLRDLSY  368 (461)
Q Consensus       337 l~i~~~~~~k~~~~~~~~~~~~i~~Fi~~~~~  368 (461)
                      |+++++...+...+.++++.+.|.+||+...-
T Consensus        68 Ivl~k~~de~~~~~~~~~~~~~l~~fi~~~~~   99 (110)
T d1bjxa_          68 VVLFKKFDEGRNNFEGEVTKENLLDFIKHNQL   99 (110)
T ss_dssp             EEEEESSSSSBCCCCSCCCHHHHHHHHHHHSS
T ss_pred             EEEeccCCccccccCCCCCHHHHHHHHHHcCc
Confidence            99998766555556789999999999999863

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.90  E-value=1.8e-05  Score=64.13  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=59.0

Q ss_pred             EcChhhhhhhhhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhc---CcccccEEEEEc
Q psy17502        142 ELTDSNFEKLVYNSDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEF---NIRGYPTIKFFS  218 (461)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~---~i~~~P~i~~~~  218 (461)
                      .++.+..+++..-..+..++.|+++||++|....|.+.++++.+. ++.+..++.+.+++...+|   +...+|.+++..
T Consensus        40 ~l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d  118 (166)
T d1z6na1          40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVLD  118 (166)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEEC
T ss_pred             cccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-CCcEEEEECccCHHHHHHHHHhccccccceeecC
Confidence            355555554432256788899999999999999999999998874 6788888878888888887   444578877765


Q ss_pred             CC
Q psy17502        219 PG  220 (461)
Q Consensus       219 ~~  220 (461)
                      ..
T Consensus       119 ~~  120 (166)
T d1z6na1         119 EE  120 (166)
T ss_dssp             TT
T ss_pred             cc
Confidence            44

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.88  E-value=9.5e-06  Score=64.51  Aligned_cols=82  Identities=15%  Similarity=0.186  Sum_probs=59.8

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC-------------------------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNAD-------------------------------------   75 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~-------------------------------------   75 (461)
                      +.+.+++.|+.+.|++|+++.+++.++.+.. ..+.+......                                     
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~  103 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLG-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT  103 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTT-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccC-ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhh
Confidence            3457899999999999999999998887542 12333221110                                     


Q ss_pred             -----CchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHHH
Q psy17502         76 -----EEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVALE  119 (461)
Q Consensus        76 -----~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~~  119 (461)
                           .+.++++++||+|+||+++ .+|+   .+.|..+.+.|.++|.+
T Consensus       104 ~~~i~~~~~la~~lGv~GTPt~~~-~nG~---~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         104 PNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEE  148 (150)
T ss_dssp             SSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCcCCCCEEEE-cCCc---EecCCCCHHHHHHHHHh
Confidence                 1224889999999999776 4563   46899999999998865

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.86  E-value=2.8e-05  Score=62.53  Aligned_cols=92  Identities=15%  Similarity=0.173  Sum_probs=63.0

Q ss_pred             HhcCCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCc---------------------hhhHhhcCC
Q psy17502         30 VIKSDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEE---------------------KSLSSSHGV   86 (461)
Q Consensus        30 ~~~~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~---------------------~~l~~~~~i   86 (461)
                      ...+++++++.|| +.||++|....+.+.+.+.++++. +.++.|..+..                     ..++++||+
T Consensus        26 ~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  105 (160)
T d2cx4a1          26 VLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNV  105 (160)
T ss_dssp             HHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTC
T ss_pred             HhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCc
Confidence            4456788888888 899999999999999998888753 66666665422                     247778877


Q ss_pred             C----------CccEEEEEc-CCCCCcccc-----CCcchhHHHHHHHHHH
Q psy17502         87 T----------GFPTVKIFS-DKRNPTPYQ-----GARTADAIIDVALEAI  121 (461)
Q Consensus        87 ~----------~~P~l~~~~-~g~~~~~y~-----g~~~~~~i~~~i~~~~  121 (461)
                      .          ..|+.++.. +|.....+.     +..+.+++++-+.+.+
T Consensus       106 ~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  156 (160)
T d2cx4a1         106 YHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  156 (160)
T ss_dssp             EEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHH
T ss_pred             cccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence            3          368888886 554333322     2345666777666654

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.85  E-value=5.1e-05  Score=62.15  Aligned_cols=87  Identities=21%  Similarity=0.348  Sum_probs=65.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEec--CCch--------------------------------
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNA--DEEK--------------------------------   78 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~--~~~~--------------------------------   78 (461)
                      ..++.+|.|....|+||+.+.+.+..+.+++.+.+.+.....  ...+                                
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   96 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            456889999999999999999999999998876655554433  2111                                


Q ss_pred             -----------------------------------------hhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHH
Q psy17502         79 -----------------------------------------SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVA  117 (461)
Q Consensus        79 -----------------------------------------~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i  117 (461)
                                                               +.++++||+++||+++  +|+......|..+.+.+.+-+
T Consensus        97 ~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk~~v~~~~~~~~~~l~~~i  174 (181)
T d1beda_          97 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSVKSLDEYFDLV  174 (181)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCCSHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CCEEeeCCCCCCCHHHHHHHH
Confidence                                                     1677889999999988  776555667777877777766


Q ss_pred             HHHH
Q psy17502        118 LEAI  121 (461)
Q Consensus       118 ~~~~  121 (461)
                      ...+
T Consensus       175 ~~L~  178 (181)
T d1beda_         175 NYLL  178 (181)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=2.5e-05  Score=63.40  Aligned_cols=80  Identities=15%  Similarity=0.251  Sum_probs=60.3

Q ss_pred             CeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc-h-----------------------------------
Q psy17502         35 EVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE-K-----------------------------------   78 (461)
Q Consensus        35 ~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~-~-----------------------------------   78 (461)
                      +..++.|+.+.|++|+++.+++.++.+.  +++.+..++..-. +                                   
T Consensus        37 ~~tv~vF~D~~CP~C~~~~~~l~~l~~~--~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~  114 (169)
T d1v58a1          37 PVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA  114 (169)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred             CEEEEEEECCCCcchHHHHHHHHHHHhc--cceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccccc
Confidence            4789999999999999999999888765  3455555544311 1                                   


Q ss_pred             --------------hhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHH
Q psy17502         79 --------------SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDV  116 (461)
Q Consensus        79 --------------~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~  116 (461)
                                    .+++++||+++|++++...++......|..+.+.|.+-
T Consensus       115 ~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~i  166 (169)
T d1v58a1         115 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNII  166 (169)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHH
Confidence                          27788999999999987754566778898888776553

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.75  E-value=7.1e-05  Score=60.76  Aligned_cols=79  Identities=18%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             CeEEEEEECCCCHhHHhhHHHHHHHHHHcCC--ceEEEEEecCCch----------------------------------
Q psy17502         35 EVWIVEYYAPWCGHCQSFKDEYMKLATALKG--VVKVGAVNADEEK----------------------------------   78 (461)
Q Consensus        35 ~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~--~v~~~~vd~~~~~----------------------------------   78 (461)
                      +..++.|+...|+||+++.+.+.++..++.+  .+.+..+.....+                                  
T Consensus        25 ~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (172)
T d1z6ma1          25 PVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDE  104 (172)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHHH
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhccc
Confidence            4679999999999999999999999887743  4555544433221                                  


Q ss_pred             --------------------------------hhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHHHH
Q psy17502         79 --------------------------------SLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDVAL  118 (461)
Q Consensus        79 --------------------------------~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~i~  118 (461)
                                                      ..++++||+++||+++  +|+   .+.|..+.+++.++|.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~---~~~g~~~~~~~~~~id  171 (172)
T d1z6ma1         105 WGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEY---IFDESVTEEELRGYIE  171 (172)
T ss_dssp             HTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTE---EECTTCCHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCE---EecCCCCHHHHHHHHc
Confidence                                            1456689999999877  663   4789999999998874

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.66  E-value=0.00011  Score=59.80  Aligned_cols=89  Identities=19%  Similarity=0.370  Sum_probs=60.1

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCcc--c---Hh-----------------------hhhh
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG-KVKLGAVDATV--H---QR-----------------------IAGE  205 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~~--~---~~-----------------------l~~~  205 (461)
                      .+++++|.|+++||++|....+.+.++...+.+ .+.+..+..+.  .   .+                       +...
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            468999999999999999999999999888864 44555554321  1   11                       2223


Q ss_pred             cCcccccEEEEEcCCCCCCcCcccccCC--CCHHHHHHHHHhh
Q psy17502        206 FNIRGYPTIKFFSPGSRSASDAQEYNGG--RTSQDIVTWALNK  246 (461)
Q Consensus       206 ~~i~~~P~i~~~~~~~~~~~~~~~y~g~--~~~~~i~~fi~~~  246 (461)
                      +++.++|+.+++...++   ...++.|.  .+.++++++|+..
T Consensus       135 ~~v~~~P~~~lID~~G~---I~~~~~G~~~~~~~e~~~~l~al  174 (176)
T d1jfua_         135 GRALGMPTSVLVDPQGC---EIATIAGPAEWASEDALKLIRAA  174 (176)
T ss_dssp             TCCSSSSEEEEECTTSB---EEEEEESCCCTTSHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEcCCCE---EEEEEECCCCCChHHHHHHHHHh
Confidence            45666799888876532   33456674  4557888887653

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.65  E-value=0.00025  Score=52.91  Aligned_cols=88  Identities=17%  Similarity=0.285  Sum_probs=70.0

Q ss_pred             CCCeEEEEEEC-CCCHhHHhhHHHHHHHHHHcCCceEEEEEecCC--chhhHhhcCCCCccEEEEEcCCCCC-ccccCCc
Q psy17502         33 SDEVWIVEYYA-PWCGHCQSFKDEYMKLATALKGVVKVGAVNADE--EKSLSSSHGVTGFPTVKIFSDKRNP-TPYQGAR  108 (461)
Q Consensus        33 ~~~~~lv~f~~-~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P~l~~~~~g~~~-~~y~g~~  108 (461)
                      .+.+.++.|.+ ..|+.|..+..-+.+++. +.+++.+...+.+.  +++++++|+|...|++.+..+|+.. .+|.|.-
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~-lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP   99 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSE-LTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLP   99 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHT-TCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCC
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHh-hCCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEecc
Confidence            34456676665 479999999888888875 45678887777654  5789999999999999999876443 6899999


Q ss_pred             chhHHHHHHHHHH
Q psy17502        109 TADAIIDVALEAI  121 (461)
Q Consensus       109 ~~~~i~~~i~~~~  121 (461)
                      ...++..||...+
T Consensus       100 ~GhEf~SlilaIl  112 (119)
T d1a8la1         100 AGHEFAAFLEDIV  112 (119)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             CchhHHHHHHHHH
Confidence            9999999988765

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.53  E-value=0.00069  Score=48.17  Aligned_cols=105  Identities=18%  Similarity=0.263  Sum_probs=70.3

Q ss_pred             eecCHHHHHHHhc-CCCeEEEEEeCCccccChhhHHHHHHHHHHHHHhccCcc-eEEEecccccchhHHH----hhCCCC
Q psy17502        258 QIVSEATFKEACE-DHPLCIVAVLPHILDCQSSCRNNYLEILQKLGDKYKQKV-WGWIWSEAVAQPDLEN----VLEIGG  331 (461)
Q Consensus       258 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~-f~~v~~d~~~~~~~~~----~lgl~~  331 (461)
                      .++.++.++.-.. -....+++|.    .....+-..++++++++|+.+.+.. ..++++|.+.++-+..    .|||.-
T Consensus         4 Kl~~e~m~e~W~dd~~g~~IvAFa----ee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl   79 (119)
T d1a8ya3           4 KLKPESMYETWEDDMDGIHIVAFA----EEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDL   79 (119)
T ss_dssp             ECCTTTHHHHHTCCBTTEEEEEEC----CTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCCT
T ss_pred             ccchHHHHHHHhcccCCceEEEEe----cCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCCC
Confidence            3445555544332 2344556553    2345556778899999999998764 7899999888776654    488886


Q ss_pred             CCCccEEEEccCcc--c-cccCC-C-CCCHHHHHHHHHHHh
Q psy17502        332 FGYPAMAVLNAKKM--K-YSLLK-G-PFSYDGINEFLRDLS  367 (461)
Q Consensus       332 ~~~P~l~i~~~~~~--k-~~~~~-~-~~~~~~i~~Fi~~~~  367 (461)
                      . -|+|.+++....  . |.+.. + ..|.+.+++||++++
T Consensus        80 ~-~PqIGVVdv~dadSvW~~~~~~~d~~t~~~Le~WiedVl  119 (119)
T d1a8ya3          80 S-APQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVL  119 (119)
T ss_dssp             T-SCEEEEEETTTCCEEECC-------CCHHHHHHHHHHHC
T ss_pred             C-CCceeeEecccCcceeeecccccccccHHHHHHHHHHhC
Confidence            4 599999998763  2 33322 2 348999999999874

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=0.00011  Score=59.34  Aligned_cols=87  Identities=17%  Similarity=0.227  Sum_probs=61.1

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCCc-------------------------hhhHhhcC
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGV-VKVGAVNADEE-------------------------KSLSSSHG   85 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~~-------------------------~~l~~~~~   85 (461)
                      .++.+++.|| +.||+.|....+.|.+.+++++.. +.+..|+.+..                         .+++++||
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg  122 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  122 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence            3567888888 999999999999999999999763 77777766532                         24788888


Q ss_pred             C-----CCccEEEEEc-CCCCCccccC----CcchhHHHHHHHH
Q psy17502         86 V-----TGFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALE  119 (461)
Q Consensus        86 i-----~~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~  119 (461)
                      |     ...|+.++.. +|.....+.+    .+..+++++.|..
T Consensus       123 v~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         123 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             CCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            8     5678888886 5533222211    2455666666653

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.45  E-value=0.00029  Score=47.82  Aligned_cols=72  Identities=15%  Similarity=0.141  Sum_probs=52.6

Q ss_pred             EEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchhHHHHH
Q psy17502         37 WIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAIIDV  116 (461)
Q Consensus        37 ~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~~~  116 (461)
                      ++.+|+.++|+-|.++...+.+   . . .+.+-.||+++++++.++|+.+ +|.|.+  +++..  .....+.+.+.+|
T Consensus         1 altLyt~~~C~LCe~A~~~l~~---~-~-~~~~~~vdI~~d~~l~~~y~~~-IPVl~~--~~~~~--l~w~fd~~~l~~~   70 (75)
T d1ttza_           1 ALTLYQRDDCHLCDQAVEALAQ---A-R-AGAFFSVFIDDDAALESAYGLR-VPVLRD--PMGRE--LDWPFDAPRLRAW   70 (75)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHH---T-T-CCCEEEEECTTCHHHHHHHTTT-CSEEEC--TTCCE--EESCCCHHHHHHH
T ss_pred             CEEEECCCCccHHHHHHHHHHh---c-c-CCcEEEEEccCCHHHHHHhCCe-eeEEEE--CCeeE--EcCccCHHHHHHH
Confidence            3678999999999887654432   1 2 3678999999999999999977 797753  33222  2334688888888


Q ss_pred             HH
Q psy17502        117 AL  118 (461)
Q Consensus       117 i~  118 (461)
                      +.
T Consensus        71 L~   72 (75)
T d1ttza_          71 LD   72 (75)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.36  E-value=0.0002  Score=57.71  Aligned_cols=87  Identities=15%  Similarity=0.201  Sum_probs=60.4

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~   82 (461)
                      .++++++.|| +.||+.|....+.|.+.++++.. .+.+..|+.+..                            ..+++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~  111 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR  111 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHH
Confidence            4568999998 99999999999999999999976 477777776532                            23667


Q ss_pred             hcCCC------CccEEEEEc-CCCCCcccc----CCcchhHHHHHHHH
Q psy17502         83 SHGVT------GFPTVKIFS-DKRNPTPYQ----GARTADAIIDVALE  119 (461)
Q Consensus        83 ~~~i~------~~P~l~~~~-~g~~~~~y~----g~~~~~~i~~~i~~  119 (461)
                      .|++.      .+|+.++.. +|.....+.    ..++.+++++.+..
T Consensus       112 ~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a  159 (167)
T d1e2ya_         112 AYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA  159 (167)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            77762      367777777 553322222    23455677766654

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=97.21  E-value=0.00029  Score=56.59  Aligned_cols=87  Identities=21%  Similarity=0.195  Sum_probs=58.9

Q ss_pred             CCCeEEEEEECC-CCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc-------------------------hhhHhhcC
Q psy17502         33 SDEVWIVEYYAP-WCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE-------------------------KSLSSSHG   85 (461)
Q Consensus        33 ~~~~~lv~f~~~-~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~-------------------------~~l~~~~~   85 (461)
                      .++.+++.||.. ||+.|....++|.+.++++.. .+.+..|+++..                         .+++++||
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~yg  109 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhC
Confidence            356788899955 999999999999999999964 477777777642                         13777787


Q ss_pred             CC------CccEEEEEc-CCCCCccccC----CcchhHHHHHHHH
Q psy17502         86 VT------GFPTVKIFS-DKRNPTPYQG----ARTADAIIDVALE  119 (461)
Q Consensus        86 i~------~~P~l~~~~-~g~~~~~y~g----~~~~~~i~~~i~~  119 (461)
                      +.      ..|+.++.. +|.....+.+    .++.+++++-+..
T Consensus       110 v~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lka  154 (166)
T d1we0a1         110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKA  154 (166)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHH
T ss_pred             CCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHh
Confidence            74      356677776 4433222222    2456666666543

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.19  E-value=0.00074  Score=45.55  Aligned_cols=72  Identities=17%  Similarity=0.350  Sum_probs=55.4

Q ss_pred             EEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCC-cchhHHHHHH
Q psy17502         39 VEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGA-RTADAIIDVA  117 (461)
Q Consensus        39 v~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~-~~~~~i~~~i  117 (461)
                      |....+.|..|.++....+++++++.-...+.+|  ++-+++. +|||-.+|++++  ||+  ..+.|. .+.++|.+|+
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~ei~-~ygVmstPalvI--dg~--vv~~G~vPs~~ei~~~L   76 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQIL-EAGLTALPGLAV--DGE--LKIMGRVASKEEIKKIL   76 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHHHH-HHTCSSSSCEEE--TTE--EEECSSCCCHHHHHHHC
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CCHHHHH-HcCCcCCCEEEE--CCE--EEEEecCCCHHHHHHHh
Confidence            4455899999999999999999998655666555  4566675 699999999988  443  346775 4888988875

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00077  Score=54.74  Aligned_cols=44  Identities=16%  Similarity=0.111  Sum_probs=39.2

Q ss_pred             CCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCc-eEEEEEecCC
Q psy17502         33 SDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGV-VKVGAVNADE   76 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~-v~~~~vd~~~   76 (461)
                      +++++||.++|+||+.|.+-.+.++++.++++++ +.+..+-|++
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nq   67 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ   67 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccc
Confidence            6789999999999999999899999999999764 8888888764

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.03  E-value=0.0016  Score=43.84  Aligned_cols=72  Identities=17%  Similarity=0.328  Sum_probs=56.4

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCC-CHHHH
Q psy17502        161 VEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGR-TSQDI  239 (461)
Q Consensus       161 v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~-~~~~i  239 (461)
                      |..+.+.|..|..+....++++..+.-...+.++  +.-.++. +||+-+.|++++        +....+.|.. +.++|
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~ei~-~ygVmstPalvI--------dg~vv~~G~vPs~~ei   72 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQIL-EAGLTALPGLAV--------DGELKIMGRVASKEEI   72 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHHHH-HHTCSSSSCEEE--------TTEEEECSSCCCHHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CCHHHHH-HcCCcCCCEEEE--------CCEEEEEecCCCHHHH
Confidence            3445889999999999999999988656666666  3455554 699999999988        3456678864 89999


Q ss_pred             HHHH
Q psy17502        240 VTWA  243 (461)
Q Consensus       240 ~~fi  243 (461)
                      .+|+
T Consensus        73 ~~~L   76 (77)
T d1iloa_          73 KKIL   76 (77)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            9886

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.0013  Score=52.14  Aligned_cols=90  Identities=9%  Similarity=0.130  Sum_probs=62.0

Q ss_pred             CCCeEEEEEECCCCH-hHHhhHHHHHHHHHHcCC-----ceEEEEEecCCch----------------------------
Q psy17502         33 SDEVWIVEYYAPWCG-HCQSFKDEYMKLATALKG-----VVKVGAVNADEEK----------------------------   78 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~-~C~~~~~~~~~~a~~~~~-----~v~~~~vd~~~~~----------------------------   78 (461)
                      .++++||.|+.+||+ .|....+.+.++.+.+..     .+.+..+..+...                            
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            578999999999996 698888888888876632     2444444433211                            


Q ss_pred             hhHhhcCCC---------------CccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHh
Q psy17502         79 SLSSSHGVT---------------GFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIR  122 (461)
Q Consensus        79 ~l~~~~~i~---------------~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~  122 (461)
                      .+.+.|++.               +.++++++. +|+....|.+..+.+++.+-|.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            134444432               346777776 67666777778888899988888764

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.03  E-value=0.0017  Score=54.86  Aligned_cols=89  Identities=13%  Similarity=0.151  Sum_probs=65.0

Q ss_pred             cCCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC---------------------------chhhHh
Q psy17502         32 KSDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE---------------------------EKSLSS   82 (461)
Q Consensus        32 ~~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~---------------------------~~~l~~   82 (461)
                      .+++.+++.|| +.||+.|..-.+.+.+.+.++.. .+.++.|+++.                           +.++++
T Consensus        27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak  106 (237)
T d2zcta1          27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVAR  106 (237)
T ss_dssp             TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHH
T ss_pred             cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHH
Confidence            35667888888 99999999999999999998865 37777777653                           224888


Q ss_pred             hcCC-------CCccEEEEEc-CCCCCc--cc--cCCcchhHHHHHHHHH
Q psy17502         83 SHGV-------TGFPTVKIFS-DKRNPT--PY--QGARTADAIIDVALEA  120 (461)
Q Consensus        83 ~~~i-------~~~P~l~~~~-~g~~~~--~y--~g~~~~~~i~~~i~~~  120 (461)
                      .||+       ...|++++.. +|....  .|  .-.++.+++++.|...
T Consensus       107 ~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1         107 RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             HTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence            8997       4578999987 443211  12  2346888999888654

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.97  E-value=0.0012  Score=54.12  Aligned_cols=87  Identities=14%  Similarity=0.159  Sum_probs=63.7

Q ss_pred             CCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC----------------------------chhhHhh
Q psy17502         34 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE----------------------------EKSLSSS   83 (461)
Q Consensus        34 ~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~----------------------------~~~l~~~   83 (461)
                      ++.+++.|| +.||+.|..-.+.|.+..+++.. .+.+..|+.+.                            +.+++++
T Consensus        33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~  112 (194)
T d1uula_          33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  112 (194)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHHH
Confidence            568899999 99999999999999999999975 47777777652                            2358889


Q ss_pred             cCCC------CccEEEEEc-CCCCCccc----cCCcchhHHHHHHHHH
Q psy17502         84 HGVT------GFPTVKIFS-DKRNPTPY----QGARTADAIIDVALEA  120 (461)
Q Consensus        84 ~~i~------~~P~l~~~~-~g~~~~~y----~g~~~~~~i~~~i~~~  120 (461)
                      ||+-      .+|+.++.. +|.....+    .-.+..++++..+...
T Consensus       113 ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~al  160 (194)
T d1uula_         113 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF  160 (194)
T ss_dssp             HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             cCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHh
Confidence            9883      367777776 44332222    2346788888877653

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00081  Score=45.90  Aligned_cols=51  Identities=20%  Similarity=0.269  Sum_probs=39.7

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhh---HhhcCCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL---SSSHGVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l---~~~~~i~~~P~l~~   94 (461)
                      ++.|+.+||++|+++...+.+.      .+.+-.+|.+++++.   .+..|.+.+|.+++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence            5778999999999988766542      277888899887654   34568999999887

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.0021  Score=52.41  Aligned_cols=42  Identities=19%  Similarity=0.417  Sum_probs=29.7

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHH---HHcCCceEEEEEecC
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLA---TALKGVVKVGAVNAD   75 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a---~~~~~~v~~~~vd~~   75 (461)
                      +.+.+|.|++-.|+||+++.+.+..+.   ....+.+.+......
T Consensus        18 ~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          18 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            446799999999999999998774443   334445666665543

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.78  E-value=0.0016  Score=44.07  Aligned_cols=66  Identities=18%  Similarity=0.268  Sum_probs=45.6

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh---hHhhcCCCCccEEEEEcCCCCCccccCCcchhHHH
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS---LSSSHGVTGFPTVKIFSDKRNPTPYQGARTADAII  114 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~~i~  114 (461)
                      ++.|..+||++|.++...+.+.      .+.+-.+|++++++   +.+++|.+.+|.+++  +|+    +-|....+.|.
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~----~igGf~~d~l~   70 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGE----HWSGFRPERIK   70 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTE----EEESCCHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc------CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCE----EEeCCCHhHHH
Confidence            5788999999999988766542      36777788887654   446679999998765  443    33333445544


Q ss_pred             H
Q psy17502        115 D  115 (461)
Q Consensus       115 ~  115 (461)
                      +
T Consensus        71 ~   71 (74)
T d1r7ha_          71 Q   71 (74)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.66  E-value=0.0015  Score=51.41  Aligned_cols=44  Identities=11%  Similarity=0.151  Sum_probs=33.6

Q ss_pred             CCCeEEEE-EECCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC
Q psy17502         33 SDEVWIVE-YYAPWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE   76 (461)
Q Consensus        33 ~~~~~lv~-f~~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~   76 (461)
                      .++++++. |++.||+.|....+.+.+.++++.+ .+.+..|+.+.
T Consensus        28 g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~   73 (153)
T d1xvwa1          28 GAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGP   73 (153)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCC
T ss_pred             CCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchh
Confidence            34444554 4589999999999999999988876 47888777764

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0013  Score=46.02  Aligned_cols=75  Identities=20%  Similarity=0.214  Sum_probs=52.3

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhc--CCCCccEEEEEcCCCCCccccCCcchh
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSH--GVTGFPTVKIFSDKRNPTPYQGARTAD  111 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~--~i~~~P~l~~~~~g~~~~~y~g~~~~~  111 (461)
                      +|.|..++|++|+++..-+.+....+.+ +.+..+|.+.+++    +.++.  +++.+|.+++  +|+    +-|..  +
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~----~IGG~--~   73 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQ----HIGGY--T   73 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTE----EEESS--H
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC-ceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCE----EEECH--H
Confidence            5788999999999999999988877765 7788888765543    33333  3577999766  553    33433  3


Q ss_pred             HHHHHHHHHH
Q psy17502        112 AIIDVALEAI  121 (461)
Q Consensus       112 ~i~~~i~~~~  121 (461)
                      ++.+++++.+
T Consensus        74 el~~~~~~~~   83 (85)
T d1egoa_          74 DFAAWVKENL   83 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            5777766543

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.60  E-value=0.0011  Score=48.35  Aligned_cols=62  Identities=21%  Similarity=0.410  Sum_probs=43.5

Q ss_pred             HhcCCCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh-----hHhhcCCCCccEEEE
Q psy17502         30 VIKSDEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS-----LSSSHGVTGFPTVKI   94 (461)
Q Consensus        30 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~-----l~~~~~i~~~P~l~~   94 (461)
                      .+++++  +|.|+.+||++|++....|.+..... ..+.+..+|...+..     +.+..|.+.+|.+++
T Consensus         8 ~i~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~-~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi   74 (105)
T d1ktea_           8 KIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKE-GLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI   74 (105)
T ss_dssp             HCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCT-TSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             HhccCC--EEEEECCCCchHHHHHHHHHHhCCcc-ceeeeeecccccccHHHHHHHhhccCCCcCcEEEE
Confidence            566666  77899999999999888776543222 236777777765542     334457888999866

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0019  Score=50.96  Aligned_cols=84  Identities=15%  Similarity=0.226  Sum_probs=58.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEe---------------------------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVD---------------------------------------  195 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~---------------------------------------  195 (461)
                      +.+.+++.|+.+.|++|+.+.+.+.++.... -.+.+..+-                                       
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~-~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNALG-ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASC  103 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHTT-EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhccC-ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhh
Confidence            3567889999999999999999888875421 122222211                                       


Q ss_pred             ---CcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHhhc
Q psy17502        196 ---ATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALNKY  247 (461)
Q Consensus       196 ---~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  247 (461)
                         ...+..+++++||++.|++++ .+|       ..+.|..+.+.|.++|.+..
T Consensus       104 ~~~i~~~~~la~~lgv~GTPt~~~-~nG-------~~v~G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         104 DVDIADHYALGVQLGVSGTPAVVL-SNG-------TLVPGYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             SCCHHHHHHHHHHHTCCSSSEEEC-TTS-------CEEESCCCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHcCCcCCCEEEE-eCC-------eEecCCCCHHHHHHHHHHHH
Confidence               112345788999999999654 344       24679999999999987643

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=96.57  E-value=0.0021  Score=51.58  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~   82 (461)
                      .++++++.|| +.||+.|..-.+.|++...++++ .+.+..|+.+..                            .++++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~  111 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHH
Confidence            3557888999 89999999999999999998864 377777776532                            24777


Q ss_pred             hcCCC-----CccEEEEEc-CCCCCccc-c---CCcchhHHHHHHHHH
Q psy17502         83 SHGVT-----GFPTVKIFS-DKRNPTPY-Q---GARTADAIIDVALEA  120 (461)
Q Consensus        83 ~~~i~-----~~P~l~~~~-~g~~~~~y-~---g~~~~~~i~~~i~~~  120 (461)
                      .||+.     ..|+.++.. +|.....+ .   -.+..+++++.+...
T Consensus       112 ~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            88874     356777776 54332222 1   134566666666543

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=96.47  E-value=0.0073  Score=40.56  Aligned_cols=72  Identities=13%  Similarity=0.178  Sum_probs=51.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHH
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDI  239 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i  239 (461)
                      +..|..++|..|......+.+    . ..+.+-.+|++.++++.++|+.. +|.+.+  ++     . ....-.++.+.+
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~----~-~~~~~~~vdI~~d~~l~~~y~~~-IPVl~~--~~-----~-~~l~w~fd~~~l   67 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ----A-RAGAFFSVFIDDDAALESAYGLR-VPVLRD--PM-----G-RELDWPFDAPRL   67 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----T-TCCCEEEEECTTCHHHHHHHTTT-CSEEEC--TT-----C-CEEESCCCHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh----c-cCCcEEEEEccCCHHHHHHhCCe-eeEEEE--CC-----e-eEEcCccCHHHH
Confidence            567889999999876544432    1 24778889999999999999987 797642  22     1 122335789999


Q ss_pred             HHHHHh
Q psy17502        240 VTWALN  245 (461)
Q Consensus       240 ~~fi~~  245 (461)
                      .+|+..
T Consensus        68 ~~~L~~   73 (75)
T d1ttza_          68 RAWLDA   73 (75)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999854

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.32  E-value=0.0033  Score=49.15  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=57.9

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeC--------------------------------------
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDA--------------------------------------  196 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~--------------------------------------  196 (461)
                      +.+.+++.|+.+.|++|+.+.+....+.+.. ..+.+.....                                      
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~  103 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLG-ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT  103 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTT-EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccC-ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhh
Confidence            3456788899999999999999888876532 2233332211                                      


Q ss_pred             ----cccHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHHHHHh
Q psy17502        197 ----TVHQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVTWALN  245 (461)
Q Consensus       197 ----~~~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~fi~~  245 (461)
                          ..+..+++++||++.|++++ .+|       ....|..+.+.|.++|.+
T Consensus       104 ~~~i~~~~~la~~lGv~GTPt~~~-~nG-------~~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         104 PNIVKKHYELGIQFGVRGTPSIVT-STG-------ELIGGYLKPADLLRALEE  148 (150)
T ss_dssp             SSHHHHHHHHHHHHTCCSSCEEEC-TTS-------CCCCSCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCcCCCCEEEE-cCC-------cEecCCCCHHHHHHHHHh
Confidence                11335788999999999775 333       246888999999998865

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.28  E-value=0.02  Score=42.19  Aligned_cols=85  Identities=18%  Similarity=0.316  Sum_probs=59.4

Q ss_pred             CCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc--cHhhhhhcCcccccEEEEEcCCCCCCcCcccccC
Q psy17502        156 DDIWLVEFFA-PWCGHCKNLEPHWEKAASELEGKVKLGAVDATV--HQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNG  232 (461)
Q Consensus       156 ~~~~~v~f~~-~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~--~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g  232 (461)
                      +++.++.|.+ +.|..|.++.....++|. +.+++.+...+.+.  ..+++++|++...|++.+..++.   ....+|.|
T Consensus        22 ~pV~l~~~~~~~~~~~~~e~~~ll~ela~-lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~---~~gIrF~G   97 (119)
T d1a8la1          22 NPVKLIVFVRKDHCQYCDQLKQLVQELSE-LTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGK---DFGVRYFG   97 (119)
T ss_dssp             SCEEEEEEECSSSCTTHHHHHHHHHHHHT-TCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTB---CCSEEEES
T ss_pred             CCEEEEEEecCCCchhHHHHHHHHHHHHh-hCCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCc---ccceEEEe
Confidence            3445555554 568999998888888875 45678887766543  56889999999999999998763   23577877


Q ss_pred             CCCHHHHHHHHH
Q psy17502        233 GRTSQDIVTWAL  244 (461)
Q Consensus       233 ~~~~~~i~~fi~  244 (461)
                      --.-.++..||.
T Consensus        98 iP~GhEf~Slil  109 (119)
T d1a8la1          98 LPAGHEFAAFLE  109 (119)
T ss_dssp             CCCTTHHHHHHH
T ss_pred             ccCchhHHHHHH
Confidence            544344555553

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.28  E-value=0.0076  Score=47.44  Aligned_cols=86  Identities=15%  Similarity=0.167  Sum_probs=57.9

Q ss_pred             CCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHhh
Q psy17502         34 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSSS   83 (461)
Q Consensus        34 ~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~~   83 (461)
                      +++++++|| +.||+.|..-.+.+.+.+.++.. .+.+..|..+..                            ..+++.
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~  105 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  105 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHHH
Confidence            568999999 88999999999999999998854 466666665421                            237778


Q ss_pred             cCCCC------ccEEEEEc-CCCCCcccc----CCcchhHHHHHHHH
Q psy17502         84 HGVTG------FPTVKIFS-DKRNPTPYQ----GARTADAIIDVALE  119 (461)
Q Consensus        84 ~~i~~------~P~l~~~~-~g~~~~~y~----g~~~~~~i~~~i~~  119 (461)
                      ||+..      .|+.++.. +|.....+.    -.++.+++++.+..
T Consensus       106 ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lka  152 (158)
T d1zyea1         106 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA  152 (158)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            88753      44666665 553322222    23456677776653

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.25  E-value=0.0048  Score=42.54  Aligned_cols=51  Identities=20%  Similarity=0.248  Sum_probs=38.0

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchh----hHhhcCCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKS----LSSSHGVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~P~l~~   94 (461)
                      +..|..+||++|+++...+.+.      .+.+..+|++++++    +.+..|.+.+|.+++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i   57 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI   57 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE
Confidence            5678899999999887666442      26777888877654    455568999999865

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0014  Score=53.76  Aligned_cols=28  Identities=18%  Similarity=0.534  Sum_probs=23.3

Q ss_pred             CccEEEEEecCcchhhhhchhHHHHHHH
Q psy17502        428 DEVWIVEYYAPWCGHCQSFKDEYMKLAT  455 (461)
Q Consensus       428 ~kdvlv~fyapwC~~Ck~l~p~~~~la~  455 (461)
                      ++..+++|+.-+|+||.+++|..+.+.+
T Consensus       113 ~~~~VvEffsy~Cp~C~~~e~~l~~~~~  140 (195)
T d1un2a_         113 GAPQVLEFFSFFCPHCYQFEEVLHISDN  140 (195)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHH
T ss_pred             CCceEEEEEecCCccccccchhhhHHHH
Confidence            5678999999999999999998764433

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.15  E-value=0.014  Score=46.31  Aligned_cols=39  Identities=21%  Similarity=0.288  Sum_probs=30.4

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CceEEEEE
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELE--GKVKLGAV  194 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~--~~i~f~~v  194 (461)
                      .++.++.|+...|++|..+.+.+.++.+.+.  +.+.+...
T Consensus        24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~   64 (172)
T d1z6ma1          24 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIK   64 (172)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeec
Confidence            3557899999999999999999999887774  34555444

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.05  E-value=0.0084  Score=40.27  Aligned_cols=51  Identities=22%  Similarity=0.298  Sum_probs=37.4

Q ss_pred             EEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCch---hhHhhcCCCCccEEEE
Q psy17502         38 IVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEK---SLSSSHGVTGFPTVKI   94 (461)
Q Consensus        38 lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~P~l~~   94 (461)
                      ++.|+.++|++|+++...+.+.      .+.+-.+|.+++.   .+.+..+...+|.+++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i   60 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI   60 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCeEEEEccCcHHHHHHHHHhCCccCCEEEE
Confidence            6788999999999988776653      2566667776543   3445678889999765

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.04  E-value=0.00091  Score=53.17  Aligned_cols=34  Identities=12%  Similarity=0.204  Sum_probs=28.4

Q ss_pred             cCCccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        426 KSDEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       426 d~~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      ..+|.|+|.|| +.||++|..-.|.+.++++.|+.
T Consensus        28 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~   62 (160)
T d2cx4a1          28 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK   62 (160)
T ss_dssp             TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTST
T ss_pred             hCCCEEEEEecccccCCchhhhhhhhhcccccccc
Confidence            35788999998 99999999988988888777653

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=96.00  E-value=0.0089  Score=47.66  Aligned_cols=88  Identities=16%  Similarity=0.153  Sum_probs=61.5

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~   82 (461)
                      .++++++.|| +.||+.|..-...|.+.++++.. .+.++.|+++..                            ..+++
T Consensus        26 g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  105 (170)
T d2h01a1          26 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  105 (170)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHH
Confidence            3578889999 89999999999999999999865 488888887731                            24777


Q ss_pred             hcCCC-----CccEEEEEc-CCCCCccc----cCCcchhHHHHHHHHH
Q psy17502         83 SHGVT-----GFPTVKIFS-DKRNPTPY----QGARTADAIIDVALEA  120 (461)
Q Consensus        83 ~~~i~-----~~P~l~~~~-~g~~~~~y----~g~~~~~~i~~~i~~~  120 (461)
                      +||+-     ..++.++.. +|.....+    .-.++.+++++.|...
T Consensus       106 ~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l  153 (170)
T d2h01a1         106 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  153 (170)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            88873     246777776 44322222    2234567777777653

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0051  Score=50.34  Aligned_cols=110  Identities=17%  Similarity=0.335  Sum_probs=56.5

Q ss_pred             chhhHhhcCCCCccEEEEEcCCCCCccccC--CcchhHHHHHHHHHHhhhhc-CCC-CCCCCCCCCceeEcChhhhhhhh
Q psy17502         77 EKSLSSSHGVTGFPTVKIFSDKRNPTPYQG--ARTADAIIDVALEAIRQKVK-GGK-SGGRKGSSKAVVELTDSNFEKLV  152 (461)
Q Consensus        77 ~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g--~~~~~~i~~~i~~~~~~~~~-~~~-~~~~~~~~~~v~~l~~~~~~~~~  152 (461)
                      +..+++++||+|+|++++  +|+-...-.+  ..+.+...+-+.+.+...+. .+. ....-.++..-..+...      
T Consensus        39 ~~~~a~~~gi~GtPtfiV--nGky~v~~~~~~~~~~~~~~~~~~~~~~~L~~k~~~~~~~~~~eG~~Y~~l~~p------  110 (195)
T d1un2a_          39 QEKAAADVQLRGVPAMFV--NGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKP------  110 (195)
T ss_dssp             HHHHHHHTTCCSSSEEEE--TTTEEECGGGSCCSSHHHHHHHHHHHHHHHTC---------CCBTTTEEECSSC------
T ss_pred             HHHHHHHhCCCcCCEEEE--CCeeeeccccccccchhhhHHHHHHHHHHHHhCcccccCCCCCCCCcceECCCC------
Confidence            456889999999999876  5543332222  22222222222222111111 011 11111222222223211      


Q ss_pred             hcCCCeEEEEEeCCCChhhhhhhHHHH---HHHHHhcCceEEEEEe
Q psy17502        153 YNSDDIWLVEFFAPWCGHCKNLEPHWE---KAASELEGKVKLGAVD  195 (461)
Q Consensus       153 ~~~~~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~i~f~~v~  195 (461)
                       ..+.+.++.||.-+|++|..+.+.+.   ++.+.+.+.+.|....
T Consensus       111 -~~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~  155 (195)
T d1un2a_         111 -VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYH  155 (195)
T ss_dssp             -CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEE
T ss_pred             -CCCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEe
Confidence             13567799999999999999998765   4444555566665543

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.83  E-value=0.022  Score=44.91  Aligned_cols=42  Identities=14%  Similarity=0.159  Sum_probs=32.9

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecC
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVGAVNAD   75 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~   75 (461)
                      .++++++.|| +.||+.|....+.+.+...++++ +.++.|..+
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~d   83 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN-TVVLTVSMD   83 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTT-EEEEEEESS
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhcc-cceEEEEec
Confidence            4567788888 77999999999999888887765 666666655

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.76  E-value=0.022  Score=45.90  Aligned_cols=89  Identities=12%  Similarity=0.026  Sum_probs=61.7

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc-------------------------hhhHhhcC
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE-------------------------KSLSSSHG   85 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~-------------------------~~l~~~~~   85 (461)
                      .++.++++|| +.||+.|....+.|++.+.++.. .+.+..|+++..                         .+++++||
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG  108 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhC
Confidence            3468888999 78899999999999999999864 466776666542                         13777888


Q ss_pred             CC------CccEEEEEc-CCCCCcc--c--cCCcchhHHHHHHHHHH
Q psy17502         86 VT------GFPTVKIFS-DKRNPTP--Y--QGARTADAIIDVALEAI  121 (461)
Q Consensus        86 i~------~~P~l~~~~-~g~~~~~--y--~g~~~~~~i~~~i~~~~  121 (461)
                      +.      ..|+.++.. +|.....  +  .-.++.+++++.+....
T Consensus       109 v~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ  155 (186)
T d1n8ja_         109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHHH
Confidence            74      256677776 4432111  1  23467888888887644

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0083  Score=47.55  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=35.0

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE   77 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~   77 (461)
                      .++++++.|| +.||+.|....+.|.+.+.++.+ +.+..|..+..
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~vv~Is~d~~   87 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDN-TVVLCISADLP   87 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTT-EEEEEEESSCH
T ss_pred             CCCeEEEEEecchhcccchHHHHHHHHHHHhhcc-ceeeeEEcCCH
Confidence            3567777777 77999999999999999988764 77777777643

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.022  Score=45.19  Aligned_cols=80  Identities=19%  Similarity=0.318  Sum_probs=56.7

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc-------------------------------------
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATV-------------------------------------  198 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~-------------------------------------  198 (461)
                      .+..++.|+.+.|++|+.+.+..+++...  +++.+..++...                                     
T Consensus        36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~--~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~  113 (169)
T d1v58a1          36 APVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  113 (169)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHhc--cceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccccc
Confidence            34678899999999999999988887654  356665554210                                     


Q ss_pred             -------------cHhhhhhcCcccccEEEEEcCCCCCCcCcccccCCCCHHHHHH
Q psy17502        199 -------------HQRIAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTSQDIVT  241 (461)
Q Consensus       199 -------------~~~l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~~~i~~  241 (461)
                                   +..+++++||.+.|++++...+    .......|..+.+.|..
T Consensus       114 ~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~----g~~~~~~G~~~~~~l~~  165 (169)
T d1v58a1         114 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKE----NTLQQAVGLPDQKTLNI  165 (169)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETT----TEEEEEESSCCHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCC----CCEEEecCCCCHHHHHH
Confidence                         1136778999999998887754    24556788777776543

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.52  E-value=0.031  Score=43.61  Aligned_cols=41  Identities=5%  Similarity=0.039  Sum_probs=31.3

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcCceEEEEEe
Q psy17502        155 SDDIWLVEFF-APWCGHCKNLEPHWEKAASELEGKVKLGAVD  195 (461)
Q Consensus       155 ~~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~  195 (461)
                      .+..+++.|| +.||+.|....+.|.+....++....+..+.
T Consensus        32 k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is   73 (156)
T d2a4va1          32 NNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLS   73 (156)
T ss_dssp             HCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeec
Confidence            3455555666 7899999999999999999998665555554

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.037  Score=43.26  Aligned_cols=91  Identities=10%  Similarity=0.056  Sum_probs=54.8

Q ss_pred             CCCeEEEEEECCCCHh-HHhhHHHHHHHHHHcC----CceEEEEEecCCchh----------------------------
Q psy17502         33 SDEVWIVEYYAPWCGH-CQSFKDEYMKLATALK----GVVKVGAVNADEEKS----------------------------   79 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~~-C~~~~~~~~~~a~~~~----~~v~~~~vd~~~~~~----------------------------   79 (461)
                      .++++||.|+..||+. |......+..+...+.    ..+.+..+......+                            
T Consensus        25 ~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (169)
T d2b7ka1          25 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  104 (169)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhccccccccccccchhhhhh
Confidence            5679999999999975 4444445544444332    234444444332211                            


Q ss_pred             hHh----------------hcCCCCccEEEEEc-CCCCCccccCCcchhHHHHHHHHHHhh
Q psy17502         80 LSS----------------SHGVTGFPTVKIFS-DKRNPTPYQGARTADAIIDVALEAIRQ  123 (461)
Q Consensus        80 l~~----------------~~~i~~~P~l~~~~-~g~~~~~y~g~~~~~~i~~~i~~~~~~  123 (461)
                      +..                .+.+.+.|++++.. +|+....|.+..+.+.+.+-|.+.++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~  165 (169)
T d2b7ka1         105 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKS  165 (169)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHH
T ss_pred             hhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            111                12466789888887 676666788888888777666666543

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.015  Score=39.12  Aligned_cols=51  Identities=10%  Similarity=0.169  Sum_probs=38.2

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhh---hhhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI---AGEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l---~~~~~i~~~P~i~~  216 (461)
                      ++.|..++|++|......+.+      ..+.|-.+|.+.+++.   .+..|.+++|.|++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~------~~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMEN------RGFDFEMINVDRVPEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH------TTCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHh------cCceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence            567888999999988877755      3467777887776543   34568889999876

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.079  Score=42.90  Aligned_cols=88  Identities=16%  Similarity=0.186  Sum_probs=62.0

Q ss_pred             CCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCCc----------------------------hhhHhh
Q psy17502         34 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADEE----------------------------KSLSSS   83 (461)
Q Consensus        34 ~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~~----------------------------~~l~~~   83 (461)
                      ++.+++.|| +.||+.|......|.+.+.+++. .+.++.|+++..                            .++++.
T Consensus        34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~  113 (197)
T d1qmva_          34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSED  113 (197)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHHH
Confidence            567888888 89999999999999999999976 488888887632                            137788


Q ss_pred             cCCC------CccEEEEEcCCCCC-c--cc--cCCcchhHHHHHHHHHH
Q psy17502         84 HGVT------GFPTVKIFSDKRNP-T--PY--QGARTADAIIDVALEAI  121 (461)
Q Consensus        84 ~~i~------~~P~l~~~~~g~~~-~--~y--~g~~~~~~i~~~i~~~~  121 (461)
                      ||+.      .+|+.++....+.+ .  .|  .-.+..++++..|....
T Consensus       114 ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~alq  162 (197)
T d1qmva_         114 YGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQ  162 (197)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhhc
Confidence            8874      25667777632233 1  12  22467788887776543

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.095  Score=35.37  Aligned_cols=83  Identities=10%  Similarity=0.126  Sum_probs=58.8

Q ss_pred             hhhhhhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhhhhhcCcccccEEEEEcCCCCCCc
Q psy17502        148 FEKLVYNSD--DIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRIAGEFNIRGYPTIKFFSPGSRSAS  225 (461)
Q Consensus       148 ~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l~~~~~i~~~P~i~~~~~~~~~~~  225 (461)
                      +..++.++.  .|++|..--.    ...+...|.++|..+++.+.|+.....           ..-|.+-+|-++..  +
T Consensus         8 l~~~l~n~t~v~pVVV~~Gv~----d~~fNeTF~~~A~~l~~Dy~Fvs~~~~-----------~~~~kLsV~LP~e~--d   70 (98)
T d2b5ea2           8 LPAYLANETFVTPVIVQSGKI----DADFNATFYSMANKHFNDYDFVSAENA-----------DDDFKLSIYLPSAM--D   70 (98)
T ss_dssp             HHHHHHHSCCSSCEEEEEESC----CHHHHHHHHHHHHHTTTTCEEEEEECT-----------TSCCEEEEEETTEE--E
T ss_pred             hHHHHhcCcccCCEEEeCCcc----ccchhHHHHHHHHHhhcceEEEeccCC-----------CCCccEEEECCCCC--C
Confidence            444455555  4788876543    268899999999999999999987532           12366777777631  3


Q ss_pred             CcccccCC----CCHHHHHHHHHhhc
Q psy17502        226 DAQEYNGG----RTSQDIVTWALNKY  247 (461)
Q Consensus       226 ~~~~y~g~----~~~~~i~~fi~~~~  247 (461)
                      ++..|+|+    .+.+.+.+||+-..
T Consensus        71 EPIvf~G~~~~i~~a~~l~~WlkVe~   96 (98)
T d2b5ea2          71 EPVVYNGKKADIADADVFEKWLQVEA   96 (98)
T ss_dssp             EEEECCSCHHHHTSHHHHHHHHHHHS
T ss_pred             CCeEEcCccCCcccHHHHHHHHeeec
Confidence            78899996    36677999997543

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=95.15  E-value=0.056  Score=42.97  Aligned_cols=40  Identities=28%  Similarity=0.507  Sum_probs=32.5

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEE
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAV  194 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v  194 (461)
                      +.++.+|.|+...|++|+.+.+.+..+.+.+.+...+...
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~   56 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKN   56 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEE
Confidence            4567889999999999999999999988888665555443

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.099  Score=43.10  Aligned_cols=88  Identities=22%  Similarity=0.232  Sum_probs=61.2

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC-------------------------------chh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE-------------------------------EKS   79 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~-------------------------------~~~   79 (461)
                      .++.++++|| +.||+.|......|.+...++.. .+.+..|.++.                               +.+
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~  105 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRE  105 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCH
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcccH
Confidence            4567888888 67999999999999999999875 36677666652                               235


Q ss_pred             hHhhcCCC------------CccEEEEEcCCCCC-c--cc--cCCcchhHHHHHHHHH
Q psy17502         80 LSSSHGVT------------GFPTVKIFSDKRNP-T--PY--QGARTADAIIDVALEA  120 (461)
Q Consensus        80 l~~~~~i~------------~~P~l~~~~~g~~~-~--~y--~g~~~~~~i~~~i~~~  120 (461)
                      ++++||+-            ..+++++....+.+ .  .|  .-.++.++++.-+...
T Consensus       106 va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~al  163 (220)
T d1prxa_         106 LAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL  163 (220)
T ss_dssp             HHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHH
Confidence            88888875            24677887632233 1  12  2346788888876553

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=94.98  E-value=0.013  Score=46.44  Aligned_cols=58  Identities=16%  Similarity=0.244  Sum_probs=42.4

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCc---hhhHhhcCCCCccE
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVGAVNADEE---KSLSSSHGVTGFPT   91 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~P~   91 (461)
                      .++++++.|| +.||+.|....+.|.+...++++ +.++.|.++..   .+.++++++..++.
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~-~~vi~iS~d~~~~~~~~~~~~~~~~~~~  102 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN-TIVLCISADLPFAQARFCGAEGIENAKT  102 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT-EEEEEEESSCHHHHTTCTTTTTCTTEEE
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHHhcc-ceEEeecCCcHHHHHHHHHHhCCccccc
Confidence            3467888888 55788899999999999999975 77888887643   34455555554443

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=94.97  E-value=0.027  Score=37.59  Aligned_cols=66  Identities=14%  Similarity=0.302  Sum_probs=44.2

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh---hhhhcCcccccEEEEEcCCCCCCcCcccccCCCCH
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR---IAGEFNIRGYPTIKFFSPGSRSASDAQEYNGGRTS  236 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~---l~~~~~i~~~P~i~~~~~~~~~~~~~~~y~g~~~~  236 (461)
                      ++.|..++|++|......+.+      ..+.|-.++++.+++   ..+.+|..++|++++  ++     +   +-|.++.
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~------~~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g-----~---~igGf~~   66 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR------AGLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DG-----E---HWSGFRP   66 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH------TTCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TT-----E---EEESCCH
T ss_pred             EEEEeCCCChhHHHHHHHHHH------cCCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CC-----E---EEeCCCH
Confidence            567889999999988877765      246666677666543   345678889998765  33     1   2344556


Q ss_pred             HHHHH
Q psy17502        237 QDIVT  241 (461)
Q Consensus       237 ~~i~~  241 (461)
                      +.|.+
T Consensus        67 d~l~~   71 (74)
T d1r7ha_          67 ERIKQ   71 (74)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            66654

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.83  E-value=0.0065  Score=48.39  Aligned_cols=33  Identities=9%  Similarity=0.129  Sum_probs=29.5

Q ss_pred             CCccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        427 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       427 ~~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      .+|-|+|.|| +.||+.|..-.|.+.++.+.|++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~   65 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAE   65 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHT
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhc
Confidence            3678999999 99999999999999999998875

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.022  Score=39.27  Aligned_cols=74  Identities=20%  Similarity=0.275  Sum_probs=49.2

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH----hhhhhc--CcccccEEEEEcCCCCCCcCcccccCC
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ----RIAGEF--NIRGYPTIKFFSPGSRSASDAQEYNGG  233 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~----~l~~~~--~i~~~P~i~~~~~~~~~~~~~~~y~g~  233 (461)
                      +|.|..++|++|......+.+....+. .+.+..++.+.+.    .+.+..  +++++|.|++  ++     .   +-|.
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g-----~---~IGG   71 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERD-DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQ-----Q---HIGG   71 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS-SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TT-----E---EEES
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCC-CceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CC-----E---EEEC
Confidence            578889999999999999999887775 5777777654432    233322  3567899766  33     1   2344


Q ss_pred             CCHHHHHHHHHhh
Q psy17502        234 RTSQDIVTWALNK  246 (461)
Q Consensus       234 ~~~~~i~~fi~~~  246 (461)
                      .  +++.+++.++
T Consensus        72 ~--~el~~~~~~~   82 (85)
T d1egoa_          72 Y--TDFAAWVKEN   82 (85)
T ss_dssp             S--HHHHHHHHHH
T ss_pred             H--HHHHHHHHhc
Confidence            3  4677776654

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.44  E-value=0.015  Score=46.41  Aligned_cols=43  Identities=23%  Similarity=0.483  Sum_probs=35.2

Q ss_pred             CCCeEEEEEECCCCH-hHHhhHHHHHHHHHHcC---CceEEEEEecC
Q psy17502         33 SDEVWIVEYYAPWCG-HCQSFKDEYMKLATALK---GVVKVGAVNAD   75 (461)
Q Consensus        33 ~~~~~lv~f~~~~c~-~C~~~~~~~~~~a~~~~---~~v~~~~vd~~   75 (461)
                      .+++++|.|+.+||+ .|....+.+.++.+.++   .++.++.|..+
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            467999999999997 69999999999888774   25777777765

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=94.06  E-value=0.016  Score=45.90  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=28.4

Q ss_pred             CccEEEEEecC-cchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYYAP-WCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fyap-wC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|-|+|.||.- ||+.|.+-.|.|.++.+.|++
T Consensus        31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~   63 (166)
T d1we0a1          31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKK   63 (166)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEecccCCcHHHHHHHHHHHHHHhhcc
Confidence            57799999965 999999999999999999965

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.04  E-value=0.013  Score=46.63  Aligned_cols=33  Identities=12%  Similarity=0.219  Sum_probs=29.7

Q ss_pred             CCccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        427 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       427 ~~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      .+|.|+|.|| +.||+.|..-.+.+.++.+.|++
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~   76 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED   76 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccc
Confidence            3688999998 99999999999999999999875

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.81  E-value=0.13  Score=41.51  Aligned_cols=87  Identities=11%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc----------------------------ccHhhhhh
Q psy17502        156 DDIWLVEFF-APWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT----------------------------VHQRIAGE  205 (461)
Q Consensus       156 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~----------------------------~~~~l~~~  205 (461)
                      ++.+++.|| +.||+.|......|.+....+.. .+.+..|..+                            .+.++++.
T Consensus        33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~  112 (194)
T d1uula_          33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  112 (194)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHHH
Confidence            467888999 89999999999999999998874 4666555433                            23357888


Q ss_pred             cCcc------cccEEEEEcCCCCCCcCccc--cc--CCCCHHHHHHHHHh
Q psy17502        206 FNIR------GYPTIKFFSPGSRSASDAQE--YN--GGRTSQDIVTWALN  245 (461)
Q Consensus       206 ~~i~------~~P~i~~~~~~~~~~~~~~~--y~--g~~~~~~i~~fi~~  245 (461)
                      ||+.      ..|+.++..+.++   ....  +.  -.++.+++.+.+..
T Consensus       113 ygv~~~~~~~~~R~tfvID~~G~---I~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         113 YGVLKEEDGVAYRGLFIIDPKQN---LRQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             HTCEETTTTEECEEEEEECTTSB---EEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             cCCeeccCCceEEEEEEECCCCe---EEEEEEecCCCCcCHHHHHHHHHH
Confidence            8873      2466666665432   2122  22  23678888887754

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.61  E-value=0.28  Score=40.71  Aligned_cols=90  Identities=10%  Similarity=0.118  Sum_probs=60.5

Q ss_pred             CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-ceEEEEEeCc---------------------------ccHhhhhh
Q psy17502        155 SDDIWLVEFF-APWCGHCKNLEPHWEKAASELEG-KVKLGAVDAT---------------------------VHQRIAGE  205 (461)
Q Consensus       155 ~~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~-~i~f~~v~~~---------------------------~~~~l~~~  205 (461)
                      .++.+++.|| +.||+.|......|.+.+..++. .+.+.-+.++                           .+.++++.
T Consensus        28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~  107 (237)
T d2zcta1          28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  107 (237)
T ss_dssp             TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred             CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHH
Confidence            4667778888 89999999999999998888863 3555544432                           34457888


Q ss_pred             cCc-------ccccEEEEEcCCCCCCcCccccc--CCCCHHHHHHHHHh
Q psy17502        206 FNI-------RGYPTIKFFSPGSRSASDAQEYN--GGRTSQDIVTWALN  245 (461)
Q Consensus       206 ~~i-------~~~P~i~~~~~~~~~~~~~~~y~--g~~~~~~i~~fi~~  245 (461)
                      ||+       ...|++++..+.++-. ....|.  -.++.++|++.|..
T Consensus       108 yGv~~~~~~~~~~RatFIIDpdG~Ir-~~~~~~~~~gR~~dEiLr~l~a  155 (237)
T d2zcta1         108 LGLLHAESATHTVRGVFIVDARGVIR-TMLYYPMELGRLVDEILRIVKA  155 (237)
T ss_dssp             TTCC----CCTTCCEEEEECTTSBEE-EEEECCTTBCCCHHHHHHHHHH
T ss_pred             cCCccccccccceeeeEEECCCCEEE-EEEEeCCCCCCCHHHHHHHHHH
Confidence            887       3468888887653210 111222  23688999888753

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.015  Score=45.99  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=26.1

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALK  458 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k  458 (461)
                      +|-|+|.|| +.||+.|.+-.|.+.+++..++
T Consensus        44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~   75 (164)
T d1qxha_          44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEID   75 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHTST
T ss_pred             CCeEEEEEecchhcccchHHHHHHHHHHHhhc
Confidence            577888777 7899999999999999887654

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=93.39  E-value=0.049  Score=37.11  Aligned_cols=51  Identities=10%  Similarity=0.122  Sum_probs=35.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccH----hhhhhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQ----RIAGEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~----~l~~~~~i~~~P~i~~  216 (461)
                      +..|..++|++|......+.+.      .+.|..+|++.+.    ++.+..|..++|.|++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i   57 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI   57 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE
Confidence            4567889999999877766552      3666677766543    3445568888998765

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.18  E-value=0.049  Score=39.14  Aligned_cols=56  Identities=18%  Similarity=0.323  Sum_probs=37.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHh-----hhhhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQR-----IAGEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~-----l~~~~~i~~~P~i~~  216 (461)
                      +|.|..+||++|......+.+..... ..+.+..+|...+..     +.+..+.+++|.|++
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~-~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi   74 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKE-GLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI   74 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT-TSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCcc-ceeeeeecccccccHHHHHHHhhccCCCcCcEEEE
Confidence            67888999999999888887643322 246666666544322     223346778898765

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.15  E-value=0.02  Score=44.61  Aligned_cols=31  Identities=13%  Similarity=0.320  Sum_probs=24.1

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALK  458 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k  458 (461)
                      .+.|+|.|| +.||++|..-.|.+.++.+.++
T Consensus        29 ~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~   60 (153)
T d1xvwa1          29 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFE   60 (153)
T ss_dssp             TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTS
T ss_pred             CCcEEEEecccccccchhhhhhhhhhhhhhhc
Confidence            366777777 8999999888888877776654

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.04  E-value=0.061  Score=42.35  Aligned_cols=46  Identities=13%  Similarity=0.073  Sum_probs=33.1

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL   80 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l   80 (461)
                      .++++++.|| +.||+.|....+.|.+.++...  +.+..|..+.....
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~g--~~vv~Is~d~~~~~   88 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAASG--ATVLCVSKDLPFAQ   88 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHTT--CEEEEEESSCHHHH
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhccccc--ccccccccchHHHH
Confidence            4567888888 5578889999999988877654  56666766654433

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=92.67  E-value=0.99  Score=31.53  Aligned_cols=85  Identities=8%  Similarity=0.094  Sum_probs=64.3

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHc-CC-ceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCCCccccCCcchh
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATAL-KG-VVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRNPTPYQGARTAD  111 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~-~~-~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~~~~y~g~~~~~  111 (461)
                      ..+.|.+|-+.. +.+.+....+.+..+++ .+ .+.+-.||..+++++++.++|-.+|||+=... ....++-|..-.+
T Consensus        11 ~~l~L~LfV~g~-p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK~~P-~P~q~l~Gs~i~~   88 (105)
T d1t4za_          11 QPLLLQLFVDTR-PLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGP-GSRQVLSGIDLTD   88 (105)
T ss_dssp             CCEEEEEEECSC-HHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEES-SCCEEEESSCHHH
T ss_pred             CCeEEEEEEcCC-cchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhhhcCC-CcceeecChhHHH
Confidence            346777777765 66666666666666554 34 58999999999999999999999999886543 2556788988888


Q ss_pred             HHHHHHHHH
Q psy17502        112 AIIDVALEA  120 (461)
Q Consensus       112 ~i~~~i~~~  120 (461)
                      .+..|.-+-
T Consensus        89 ql~~w~prw   97 (105)
T d1t4za_          89 QLANQLPQW   97 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHhhhhhHh
Confidence            888887654

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.07  E-value=0.047  Score=42.63  Aligned_cols=32  Identities=9%  Similarity=0.170  Sum_probs=28.6

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|.|+|.|| +-||+.|..-.+.+.++.+.|+.
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~   58 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD   58 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhc
Confidence            678999999 99999999999999999888864

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.93  E-value=0.064  Score=42.48  Aligned_cols=33  Identities=24%  Similarity=0.587  Sum_probs=29.1

Q ss_pred             CCccEEEEEecCcch-hhhhchhHHHHHHHHHhh
Q psy17502        427 SDEVWIVEYYAPWCG-HCQSFKDEYMKLATALKV  459 (461)
Q Consensus       427 ~~kdvlv~fyapwC~-~Ck~l~p~~~~la~~~k~  459 (461)
                      .+|-|||.|+.+||. .|....+.+.++.+.|++
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~   63 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA   63 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhcc
Confidence            378999999999996 799999999999888864

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.76  E-value=0.12  Score=37.33  Aligned_cols=61  Identities=10%  Similarity=0.230  Sum_probs=41.5

Q ss_pred             chhHHHhcCCCeEEEEEEC-----CCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhh----HhhcCCCCccEEEE
Q psy17502         25 NFDDKVIKSDEVWIVEYYA-----PWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSL----SSSHGVTGFPTVKI   94 (461)
Q Consensus        25 ~f~~~~~~~~~~~lv~f~~-----~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~P~l~~   94 (461)
                      .... +++++++++  |.-     |.|+.|+++...|.+    +  .+.+..+|.++++++    .+.-+.+.+|.+++
T Consensus         7 ~i~~-~i~~~~Vvv--F~Kgt~~~p~Cp~c~~ak~lL~~----~--~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi   76 (109)
T d1wika_           7 GLKV-LTNKASVML--FMKGNKQEAKCGFSKQILEILNS----T--GVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV   76 (109)
T ss_dssp             CHHH-HHTTSSEEE--EESSTTTCCCSSTHHHHHHHHHH----T--CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC
T ss_pred             HHHH-HHhcCCEEE--EeCCCCCCCCChHHHHHHHHHHh----c--CCCceEEEecccHHHHHHHHHhcCCCCCCeEEE
Confidence            3444 676666433  543     789999998876643    2  267788888887654    44557888999875

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.15  Score=40.59  Aligned_cols=33  Identities=15%  Similarity=0.114  Sum_probs=29.7

Q ss_pred             CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC
Q psy17502        155 SDDIWLVEFFAPWCGHCKNLEPHWEKAASELEG  187 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~  187 (461)
                      .+++++|.+.|+||+.|....+.++++.+++++
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~   55 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGP   55 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhcc
Confidence            578999999999999999889999999998864

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=91.29  E-value=0.24  Score=32.63  Aligned_cols=51  Identities=10%  Similarity=0.162  Sum_probs=35.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHhcCceEEEEEeCccc---HhhhhhcCcccccEEEE
Q psy17502        160 LVEFFAPWCGHCKNLEPHWEKAASELEGKVKLGAVDATVH---QRIAGEFNIRGYPTIKF  216 (461)
Q Consensus       160 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~---~~l~~~~~i~~~P~i~~  216 (461)
                      ++.|..++|++|......+.+.      .+.|..++.+.+   ..+.+..+..++|.|++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i   60 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI   60 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCeEEEEccCcHHHHHHHHHhCCccCCEEEE
Confidence            5778899999999888776653      355555555443   23444567788998765

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=89.97  E-value=0.7  Score=37.65  Aligned_cols=88  Identities=14%  Similarity=0.137  Sum_probs=61.1

Q ss_pred             CCCeEEEEEE-CCCCHhHHhhHHHHHHHHHHcCC-ceEEEEEecCC----------------------------chhhHh
Q psy17502         33 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKG-VVKVGAVNADE----------------------------EKSLSS   82 (461)
Q Consensus        33 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~a~~~~~-~v~~~~vd~~~----------------------------~~~l~~   82 (461)
                      .++.++++|| +.||+.|..-...|.+.+.++.. .+.+..|.++.                            +.++++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~  108 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELAN  108 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHHH
Confidence            4677888888 88999999999999999999875 47777777653                            125888


Q ss_pred             hcCCCC------------ccEEEEEcCCCCC-c--cc--cCCcchhHHHHHHHHH
Q psy17502         83 SHGVTG------------FPTVKIFSDKRNP-T--PY--QGARTADAIIDVALEA  120 (461)
Q Consensus        83 ~~~i~~------------~P~l~~~~~g~~~-~--~y--~g~~~~~~i~~~i~~~  120 (461)
                      .||+-.            ..++++....+.+ .  .|  .-.++.++++..|...
T Consensus       109 ~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aL  163 (219)
T d1xcca_         109 KLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  163 (219)
T ss_dssp             HHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHH
Confidence            888731            2366666633233 1  12  3356888888887654

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=89.79  E-value=0.17  Score=40.31  Aligned_cols=40  Identities=25%  Similarity=0.453  Sum_probs=27.3

Q ss_pred             CCeEEEEEeCCCChhhhhhhHHHHHHH---HHhcCceEEEEEe
Q psy17502        156 DDIWLVEFFAPWCGHCKNLEPHWEKAA---SELEGKVKLGAVD  195 (461)
Q Consensus       156 ~~~~~v~f~~~~c~~c~~~~~~~~~~a---~~~~~~i~f~~v~  195 (461)
                      +.+.+|.|++-.|++|+.+.+....+.   ....+.+.|....
T Consensus        18 ~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~   60 (188)
T d1fvka_          18 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYH   60 (188)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEE
T ss_pred             CCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEe
Confidence            456788999999999999987664433   3333455555553

>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Circadian oscillation regulator KaiB
species: Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]

Probab=89.76  E-value=0.16  Score=34.69  Aligned_cols=58  Identities=10%  Similarity=0.119  Sum_probs=49.9

Q ss_pred             eEEEEEECCCCHhHHhhHHHHHHHHHHc-CCceEEEEEecCCchhhHhhcCCCCccEEE
Q psy17502         36 VWIVEYYAPWCGHCQSFKDEYMKLATAL-KGVVKVGAVNADEEKSLSSSHGVTGFPTVK   93 (461)
Q Consensus        36 ~~lv~f~~~~c~~C~~~~~~~~~~a~~~-~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~   93 (461)
                      ++|-+|.+..-+.+.+....+.++.++. .++..+-.||..++|++++.++|-.+|||+
T Consensus         2 y~L~LyVaG~tp~S~~ai~nl~~i~e~~l~~~y~LeVIDv~~qP~lAe~~~IvATPtLv   60 (90)
T d1r5pa_           2 YVLKLYVAGNTPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQLAEEDKILATPTLS   60 (90)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTSCSCCTTCCEECHHHHG
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEeehHHH
Confidence            5677888989999998888888777654 567999999999999999999999999964

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=89.70  E-value=0.079  Score=41.83  Aligned_cols=32  Identities=9%  Similarity=0.087  Sum_probs=27.6

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      ++.|+|.|| +-||+.|.+-.+.|.++...|+.
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~   65 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE   65 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH
T ss_pred             CCEEEEEEEccccCCcCHHHHHHHHHhHHhhcc
Confidence            357999999 99999999989999988888864

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=88.45  E-value=0.11  Score=40.90  Aligned_cols=32  Identities=16%  Similarity=0.134  Sum_probs=28.4

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|.|+|.|| +.||++|.+-.+.|.+.++.|++
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~   59 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE   59 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH
T ss_pred             CCeEEEEEECCCCCCccchhhHHHhhhhhhhhc
Confidence            477999999 99999999999999999888864

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.28  E-value=0.18  Score=40.24  Aligned_cols=32  Identities=9%  Similarity=0.012  Sum_probs=29.0

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|.|+|.|| +.||..|..-.+.|.++.+.|++
T Consensus        30 Gk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~   62 (186)
T d1n8ja_          30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQK   62 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEeccCCCccHHHHHHHHHhhhhccc
Confidence            688999999 89999999999999999999864

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.90  E-value=1.9  Score=32.40  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=25.7

Q ss_pred             CCCeEEEEEeCCCCh-hhhhhhHHHHHHHHHhc
Q psy17502        155 SDDIWLVEFFAPWCG-HCKNLEPHWEKAASELE  186 (461)
Q Consensus       155 ~~~~~~v~f~~~~c~-~c~~~~~~~~~~a~~~~  186 (461)
                      .+++++|.|+.+||+ .|....+.+.++.+.+.
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~   51 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEID   51 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhh
Confidence            468999999999995 58888888888777653

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=87.81  E-value=0.1  Score=40.74  Aligned_cols=31  Identities=10%  Similarity=0.139  Sum_probs=23.8

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALK  458 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k  458 (461)
                      +|-++|.|| +.||+.|.+-.|.+.++...++
T Consensus        42 gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~   73 (163)
T d1psqa_          42 GKKKVLSVVPSIDTGICSTQTRRFNEELAGLD   73 (163)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT
T ss_pred             CcEEEEEeccccccccchhhHHHHHHHHHhhc
Confidence            566777777 7899999998888877665554

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=86.78  E-value=0.51  Score=36.58  Aligned_cols=53  Identities=17%  Similarity=0.284  Sum_probs=37.7

Q ss_pred             CCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcc---cHhhhhhcCcc
Q psy17502        156 DDIWLVEFFA-PWCGHCKNLEPHWEKAASELEGKVKLGAVDATV---HQRIAGEFNIR  209 (461)
Q Consensus       156 ~~~~~v~f~~-~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~---~~~l~~~~~i~  209 (461)
                      ++++++.||. .||+.|....+.|.+...++++ +.+.-+.++.   ...+++++++.
T Consensus        42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~-~~vi~iS~d~~~~~~~~~~~~~~~   98 (164)
T d1q98a_          42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN-TIVLCISADLPFAQARFCGAEGIE   98 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT-EEEEEEESSCHHHHTTCTTTTTCT
T ss_pred             CcEEEEEecCccccCcccHHHHHHHHHHHHhcc-ceEEeecCCcHHHHHHHHHHhCCc
Confidence            4678888885 5777799999999999999864 6666666553   23444555554

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.78  E-value=0.26  Score=38.44  Aligned_cols=31  Identities=10%  Similarity=0.107  Sum_probs=23.4

Q ss_pred             CCccEEEEEe-cCcchhhhhchhHHHHHHHHH
Q psy17502        427 SDEVWIVEYY-APWCGHCQSFKDEYMKLATAL  457 (461)
Q Consensus       427 ~~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~  457 (461)
                      .+|-|+|.|| +.||+.|.+-.|.+.+.++.+
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~   73 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS   73 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhcccc
Confidence            4677888888 568888998888777665543

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.62  E-value=5.8  Score=27.45  Aligned_cols=77  Identities=12%  Similarity=0.066  Sum_probs=54.9

Q ss_pred             CCeEEEEEECCCCHhHHhhHHHHHHHHHHcCCceEEEEEecCCchhhHhhcCCCCccEEEEEcCCCC-CccccCCcchhH
Q psy17502         34 DEVWIVEYYAPWCGHCQSFKDEYMKLATALKGVVKVGAVNADEEKSLSSSHGVTGFPTVKIFSDKRN-PTPYQGARTADA  112 (461)
Q Consensus        34 ~~~~lv~f~~~~c~~C~~~~~~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P~l~~~~~g~~-~~~y~g~~~~~~  112 (461)
                      .+++-+..+...|..|..+..-++++|. +.+++.+..-+.          +....|++.+..+|.. -.+|.|.-...+
T Consensus        18 ~~~V~l~~~~~~~~~s~el~~~l~eva~-lSdkI~~~~~~~----------~~~r~Ps~~i~~~g~~~gI~F~GiP~GhE   86 (102)
T d1hyua3          18 TKPVELIATLDDSAKSAEIKELLAEIAE-LSDKVTFKEDNT----------LPVRKPSFLITNPGSQQGPRFAGSPLGHE   86 (102)
T ss_dssp             CSCEEEEEECCSSHHHHHHHHHHHHHHT-TCTTEEEEECTT----------SSSCSSEEEEECTTCCCSCEEESCCCGGG
T ss_pred             CCCEEEEEEeCCChhHHHHHHHHHHHHh-hCCCeEEEEcCC----------CCCCCCeEEEecCCCEeeeEEecCCCccc
Confidence            3455555666789999988877777775 556777753222          2234699999886644 378999999999


Q ss_pred             HHHHHHHHH
Q psy17502        113 IIDVALEAI  121 (461)
Q Consensus       113 i~~~i~~~~  121 (461)
                      +..+|...+
T Consensus        87 F~Slilail   95 (102)
T d1hyua3          87 FTSLVLALL   95 (102)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987665

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.58  E-value=0.51  Score=37.84  Aligned_cols=32  Identities=9%  Similarity=0.167  Sum_probs=28.5

Q ss_pred             CccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        428 DEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       428 ~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      +|.|+|+|| +-||..|..-...+.++.+.|++
T Consensus        34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~   66 (197)
T d1qmva_          34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRK   66 (197)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT
T ss_pred             CCeEEEEEecccccccchhhhHHHHHHHHHhcc
Confidence            678999999 99999999999999998888864

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.54  E-value=1.6  Score=30.99  Aligned_cols=45  Identities=18%  Similarity=0.245  Sum_probs=30.6

Q ss_pred             CCChhhhhhhHHHHHHHHHhcCceEEEEEeCcccHhh----hhhcCcccccEEEE
Q psy17502        166 PWCGHCKNLEPHWEKAASELEGKVKLGAVDATVHQRI----AGEFNIRGYPTIKF  216 (461)
Q Consensus       166 ~~c~~c~~~~~~~~~~a~~~~~~i~f~~v~~~~~~~l----~~~~~i~~~P~i~~  216 (461)
                      |.|++|......+.+    +  .+.|..++.+.+.++    .+.-+...+|.|++
T Consensus        28 p~Cp~c~~ak~lL~~----~--~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi   76 (109)
T d1wika_          28 AKCGFSKQILEILNS----T--GVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV   76 (109)
T ss_dssp             CCSSTHHHHHHHHHH----T--CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC
T ss_pred             CCChHHHHHHHHHHh----c--CCCceEEEecccHHHHHHHHHhcCCCCCCeEEE
Confidence            779999988877754    2  356667777665443    33456677888765

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.25  E-value=0.71  Score=37.70  Aligned_cols=33  Identities=18%  Similarity=0.092  Sum_probs=28.7

Q ss_pred             CCccEEEEEe-cCcchhhhhchhHHHHHHHHHhh
Q psy17502        427 SDEVWIVEYY-APWCGHCQSFKDEYMKLATALKV  459 (461)
Q Consensus       427 ~~kdvlv~fy-apwC~~Ck~l~p~~~~la~~~k~  459 (461)
                      .+|.|+|+|| +-||..|..-.+.+.++.+.|++
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~   59 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK   59 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhc
Confidence            3688999999 78999999999999998888864